AlfalfaGEDB | MS.gene57336

M. sativa cultivar XinJiangDaYe / MS.gene57336

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005543 GO:0008289 GO:0043167 GO:0043168
PFAM: PF07651.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57336.t1	KEH20777.1	97	330	6	1	1	330	1	326	8.80E-175	622.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57336.t1	Q8L936	49.6	343	148	8	8	328	9	348	4.1e-72	273.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57336.t1	A0A072TTL4	97.0	330	6	1	1	330	1	326	6.3e-175	622.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene57336	0.821743	3.43E-53	-1.69E-46
MS.gene049452	MS.gene57336	0.868882	4.69E-66	-1.69E-46
MS.gene050105	MS.gene57336	0.813463	2.53E-51	-1.69E-46
MS.gene050680	MS.gene57336	0.801955	7.05E-49	-1.69E-46
MS.gene050750	MS.gene57336	0.819687	1.02E-52	-1.69E-46
MS.gene050759	MS.gene57336	0.851795	7.03E-61	-1.69E-46
MS.gene050760	MS.gene57336	0.800542	1.37E-48	-1.69E-46
MS.gene050826	MS.gene57336	0.815355	9.65E-52	-1.69E-46
MS.gene050953	MS.gene57336	0.822218	2.67E-53	-1.69E-46
MS.gene050962	MS.gene57336	0.84577	3.30E-59	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57336.t1	MTR_8g089850	96.970	330	6	1	1	330	1	326	0.0	647
MS.gene57336.t1	MTR_3g086670	62.349	332	116	6	3	330	2	328	1.55e-136	390
MS.gene57336.t1	MTR_3g099670	38.699	292	168	5	9	292	10	298	5.12e-57	188
MS.gene57336.t1	MTR_3g106900	31.579	152	99	3	1	149	1	150	7.57e-16	78.6
MS.gene57336.t1	MTR_4g127440	25.097	259	177	7	27	274	30	282	3.83e-15	76.6
MS.gene57336.t1	MTR_4g115420	28.061	196	124	6	2	190	5	190	2.86e-13	70.9
MS.gene57336.t1	MTR_2g037980	27.746	173	113	4	27	190	30	199	3.45e-13	70.5
MS.gene57336.t1	MTR_8g008860	30.065	153	101	3	1	149	1	151	3.47e-13	70.5
MS.gene57336.t1	MTR_2g008170	29.870	154	100	4	1	149	1	151	8.77e-13	69.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57336.t1	AT4G40080	48.864	352	154	9	1	329	1	349	5.05e-98	294
MS.gene57336.t1	AT5G10410	34.432	273	151	10	7	262	6	267	8.08e-32	122
MS.gene57336.t1	AT5G65370	29.181	281	168	9	1	262	1	269	8.24e-24	99.4
MS.gene57336.t1	AT5G57200	24.125	257	180	6	27	274	30	280	8.09e-14	72.8
MS.gene57336.t1	AT4G32285	29.530	149	100	3	4	149	3	149	1.27e-13	72.0
MS.gene57336.t1	AT4G32285	29.530	149	100	3	4	149	3	149	1.27e-13	72.0
MS.gene57336.t1	AT2G25430	29.730	148	99	3	5	149	4	149	1.44e-13	72.0
MS.gene57336.t1	AT4G25940	30.247	162	106	4	10	167	11	169	2.85e-13	70.9
MS.gene57336.t1	AT4G02650	30.345	145	94	3	10	149	10	152	3.07e-13	70.9
MS.gene57336.t1	AT2G01600	33.333	129	81	4	31	157	34	159	5.48e-13	70.1

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Find 0 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTTGAAGTGAATGAGTTTA+AGG	+	57390:10862-10881	MS.gene57336:CDS	30.0%
ATAATACAAATCCAACTTCG+TGG	+	57390:10549-10568	MS.gene57336:CDS	30.0%
CTTTGTACTTCACGAATATT+AGG	+	57390:10620-10639	MS.gene57336:CDS	30.0%
TAATACAAATCCAACTTCGT+GGG	+	57390:10550-10569	MS.gene57336:CDS	30.0%
TATTATGTCGAAAATTCGAG+AGG	-	57390:10535-10554	None:intergenic	30.0%
AAGTGAATGAGTTTAAGGAG+AGG	+	57390:10867-10886	MS.gene57336:CDS	35.0%
AATGAGTTTAAGGAGAGGTT+AGG	+	57390:10872-10891	MS.gene57336:CDS	35.0%
ATAAGGAGGGAAGAAAGTTA+AGG	+	57390:11065-11084	MS.gene57336:CDS	35.0%
ATGAGTTTAAGGAGAGGTTA+GGG	+	57390:10873-10892	MS.gene57336:CDS	35.0%
ATTTGGAGAAGCTGTTGAAT+TGG	+	57390:10904-10923	MS.gene57336:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
57390	gene	10176	11168	10176	ID=MS.gene57336
57390	mRNA	10176	11168	10176	ID=MS.gene57336.t1;Parent=MS.gene57336
57390	exon	10176	11168	10176	ID=MS.gene57336.t1.exon1;Parent=MS.gene57336.t1
57390	CDS	10176	11168	10176	ID=cds.MS.gene57336.t1;Parent=MS.gene57336.t1

Gene Sequence

>MS.gene57336

ATGACAAAACTCACAGTCACAAACCTAATAAACATAATCAAAGACAAAGCTTCGCAAAGCAAAGCAGCGTTACTTTCTAAATCCACCACCCTCTCCCTTTTACGCGCCACCACGCATGACTCCTTCACTCCTCCCACCCACAAACATATCTCCACGCTCCTCTCCTCCACCGACGGTTCACGCGCAACCGCTTCCTCCTTCTTAGAACTCCTCATGGACCGTCTTCAAAACACCAACAACGCCGCCGTTGCTCTCAAGTCTCTCATCATCGTTCATCATATCATCAGCCATGGAAGCTTCATACTTCAAGATCAGTTATCTGTTTACCCTTCAACCGGTGGTAGAAACTATCTTAACCTCTCGAATTTTCGACATAATACAAATCCAACTTCGTGGGAACTTTCTTGTTGGGTACGCTGGTTTGCTGAACATATAGAGAATCTTCTTTGTACTTCACGAATATTAGGTTTCTTCTTTCTTGGGAAATCTTTGTGTGACGGTGAAGAGAGAGTTTCTTGTCTTACAAACTGTGGTTTGTTGAAGGAGTTTGATTCTTTGGTGACACTGGTTGAGGGGATTTGTAAGAGACCAGATCAAGTGAACATGAACAAGAACAAGAACAAGTTGGTGGATGAGATAGTGAATTTGGTTTGTGAAGATTGGGTGGTGATAGAAACTGTGGTGAAAGTTGAAGTGAATGAGTTTAAGGAGAGGTTAGGGTGTTTGGAATTTGGAGAAGCTGTTGAATTGGTTTGTTGTTTGAAGAGGTTGGAGGAGTGTAAAGAGAGGGTGGTGATGATTTTGGAGTCACAGCAAGGGTTGTGGGATTCGGTGAGAGAGGTGAAGGATAAGGTTGGAATGGAGGTGTATAAGGAAAAGGGTAGGGTGCATAAGGAGGGAAGAAAGTTAAGGTTTAGTGAGTCTGATCGGTTTTCTGCTAGAGTTATCAGTTCTCGTGATTCCCTTTGGTTTCCCTCTGGAAGGTTATTGTAA

Protein sequence

>MS.gene57336.t1

MTKLTVTNLINIIKDKASQSKAALLSKSTTLSLLRATTHDSFTPPTHKHISTLLSSTDGSRATASSFLELLMDRLQNTNNAAVALKSLIIVHHIISHGSFILQDQLSVYPSTGGRNYLNLSNFRHNTNPTSWELSCWVRWFAEHIENLLCTSRILGFFFLGKSLCDGEERVSCLTNCGLLKEFDSLVTLVEGICKRPDQVNMNKNKNKLVDEIVNLVCEDWVVIETVVKVEVNEFKERLGCLEFGEAVELVCCLKRLEECKERVVMILESQQGLWDSVREVKDKVGMEVYKEKGRVHKEGRKLRFSESDRFSARVISSRDSLWFPSGRLL