Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050794.t1 | XP_003626145.1 | 98 | 455 | 7 | 2 | 1 | 453 | 1 | 455 | 3.40E-262 | 913.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050794.t1 | Q3E6S9 | 71.9 | 430 | 121 | 0 | 23 | 452 | 45 | 474 | 3.5e-191 | 669.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050794.t1 | G7KWF1 | 98.0 | 455 | 7 | 2 | 1 | 453 | 1 | 455 | 2.5e-262 | 913.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050794 | MS.gene050796 | 0.992283 | 2.27E-192 | -1.69E-46 |
| MS.gene050794 | MS.gene23100 | 0.988461 | 4.15E-174 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene07363 | MS.gene050794 | PPI |
| MS.gene20907 | MS.gene050794 | PPI |
| MS.gene005429 | MS.gene050794 | PPI |
| MS.gene20906 | MS.gene050794 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050794.t1 | MTR_7g111540 | 98.022 | 455 | 7 | 2 | 1 | 453 | 1 | 455 | 0.0 | 930 |
| MS.gene050794.t1 | MTR_1g484920 | 71.239 | 452 | 115 | 7 | 4 | 452 | 5 | 444 | 0.0 | 670 |
| MS.gene050794.t1 | MTR_1g484920 | 64.000 | 450 | 108 | 7 | 4 | 452 | 5 | 401 | 0.0 | 583 |
| MS.gene050794.t1 | MTR_1g086070 | 60.225 | 445 | 166 | 4 | 16 | 453 | 9 | 449 | 0.0 | 561 |
| MS.gene050794.t1 | MTR_3g083980 | 23.887 | 247 | 158 | 9 | 52 | 286 | 79 | 307 | 4.25e-11 | 64.7 |
| MS.gene050794.t1 | MTR_3g083980 | 23.887 | 247 | 158 | 9 | 52 | 286 | 79 | 307 | 7.17e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050794.t1 | AT5G26600 | 71.860 | 430 | 121 | 0 | 23 | 452 | 45 | 474 | 0.0 | 659 |
| MS.gene050794.t1 | AT5G26600 | 71.860 | 430 | 121 | 0 | 23 | 452 | 45 | 474 | 0.0 | 659 |
| MS.gene050794.t1 | AT3G62130 | 59.465 | 449 | 171 | 3 | 10 | 451 | 7 | 451 | 0.0 | 583 |
| MS.gene050794.t1 | AT3G62130 | 59.465 | 449 | 171 | 3 | 10 | 451 | 7 | 451 | 0.0 | 583 |
Find 117 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAGAAAAGCTTTGGAAAA+AGG | 0.195948 | 7.4:-4769016 | MS.gene050794:CDS |
| GGGTGTGTGCCGTTGATGTC+TGG | 0.217783 | 7.4:+4769535 | None:intergenic |
| TTCTGAAGCGGTGATGAAAT+TGG | 0.267026 | 7.4:+4769483 | None:intergenic |
| TTCTTATCAGGTTTACAATA+AGG | 0.270823 | 7.4:-4768312 | MS.gene050794:CDS |
| CTTTAGCGTTGACTAGGTTT+TGG | 0.278918 | 7.4:+4769278 | None:intergenic |
| TGAGGACTATTACAAGTTTC+GGG | 0.278960 | 7.4:-4768288 | MS.gene050794:CDS |
| CGCATTAACAACGGCAGCTT+TGG | 0.288638 | 7.4:-4769421 | MS.gene050794:CDS |
| GTTGGTTTGCCTACTTGTTT+TGG | 0.289395 | 7.4:-4768464 | MS.gene050794:CDS |
| TTGAGGACTATTACAAGTTT+CGG | 0.291739 | 7.4:-4768289 | MS.gene050794:CDS |
| ATTGGTGGTTCCTGAGGCTT+TGG | 0.293437 | 7.4:-4768630 | MS.gene050794:CDS |
| GTATGCAAGGATTTCTTATC+AGG | 0.306860 | 7.4:-4768324 | MS.gene050794:CDS |
| GTTGATGCTGCTCATGCAAT+TGG | 0.335144 | 7.4:-4768869 | MS.gene050794:CDS |
| GACTGAGTTTAGAAAAGCTT+TGG | 0.343813 | 7.4:-4769023 | MS.gene050794:CDS |
| GAAACATATGTGTGCTAGTA+TGG | 0.345388 | 7.4:-4768492 | MS.gene050794:CDS |
| GTTAACCAACTGGTGGATAA+TGG | 0.356240 | 7.4:-4768260 | MS.gene050794:CDS |
| TTAACCAACTGGTGGATAAT+GGG | 0.360518 | 7.4:-4768259 | MS.gene050794:CDS |
| GGCGTCGTGGTGGCTGAATT+CGG | 0.363203 | 7.4:+4769453 | None:intergenic |
| GTTATGCTTCATTATGCTTA+CGG | 0.382514 | 7.4:-4769145 | MS.gene050794:CDS |
| AGGTTTGAAGGAGGGATTGA+AGG | 0.384340 | 7.4:-4768596 | MS.gene050794:CDS |
| ATACTAGTAATTTGCATAAG+TGG | 0.387811 | 7.4:-4768805 | MS.gene050794:CDS |
| AAAGCTTGGGGAACTCATCT+TGG | 0.390530 | 7.4:-4768521 | MS.gene050794:CDS |
| CAGAGAGGAAGGTGTTGAAC+AGG | 0.391316 | 7.4:-4768897 | MS.gene050794:CDS |
| CTAGGCGGTCTATAATATAT+AGG | 0.405452 | 7.4:+4768374 | None:intergenic |
| TCGTTCGAACTCACCGGAAA+AGG | 0.408776 | 7.4:+4769055 | None:intergenic |
| CTTTGTTGAATTTACCTTCA+CGG | 0.412584 | 7.4:+4769179 | None:intergenic |
| AGAGATGTTGGTGAAAGCTT+GGG | 0.415575 | 7.4:-4768534 | MS.gene050794:CDS |
| CCTGTTGTGTCTCATGAGTA+TGG | 0.423698 | 7.4:-4768707 | MS.gene050794:CDS |
| AACGATAGCGGCAGCGGTGG+TGG | 0.430670 | 7.4:+4769225 | None:intergenic |
| AATTGAGCGGGAGTTGTTGA+TGG | 0.432615 | 7.4:+4769303 | None:intergenic |
| AAGGGATTATAGTGCTCAAT+TGG | 0.439209 | 7.4:-4768648 | MS.gene050794:CDS |
| ATACTAGCACACATATGTTT+CGG | 0.449235 | 7.4:+4768494 | None:intergenic |
| AGTTGTTGATGGCGGGTTTG+AGG | 0.455931 | 7.4:+4769314 | None:intergenic |
| GAGAGATGTTGGTGAAAGCT+TGG | 0.457352 | 7.4:-4768535 | MS.gene050794:CDS |
| AAATTGGAAGAAGATAGTTT+AGG | 0.459284 | 7.4:+4769499 | None:intergenic |
| TCGGGATGCTGTTAACCAAC+TGG | 0.460704 | 7.4:-4768270 | MS.gene050794:CDS |
| GGTTTGAAGGAGGGATTGAA+GGG | 0.463437 | 7.4:-4768595 | MS.gene050794:CDS |
| GGAGAGGATGGAGGAAGGAC+AGG | 0.465657 | 7.4:+4769396 | None:intergenic |
| TAAGCTGAGGACACATTTGA+GGG | 0.469751 | 7.4:-4768417 | MS.gene050794:CDS |
| TGCTCAATTGGTGGTTCCTG+AGG | 0.484693 | 7.4:-4768636 | MS.gene050794:CDS |
| TTAAGCTGAGGACACATTTG+AGG | 0.485434 | 7.4:-4768418 | MS.gene050794:CDS |
| ATCTGAATCAATTCCTTCAC+AGG | 0.485471 | 7.4:+4768923 | None:intergenic |
| TGATGTCTTTAGCGTTGACT+AGG | 0.486204 | 7.4:+4769272 | None:intergenic |
| GGTGTGTGCCGTTGATGTCT+GGG | 0.488748 | 7.4:+4769536 | None:intergenic |
| AAGCTTGGGGAACTCATCTT+GGG | 0.493357 | 7.4:-4768520 | MS.gene050794:CDS |
| GTGTCTCATGAGTATGGAAA+TGG | 0.493809 | 7.4:-4768701 | MS.gene050794:CDS |
| GATGTTGATATGCAAGATAT+TGG | 0.498349 | 7.4:-4768839 | MS.gene050794:CDS |
| TGGTTGAAGTAGAAGTGATC+GGG | 0.502974 | 7.4:+4769337 | None:intergenic |
| CATGAAGCTGTTATTGAGAT+GGG | 0.504923 | 7.4:-4768557 | MS.gene050794:CDS |
| CCATACTCATGAGACACAAC+AGG | 0.509009 | 7.4:+4768707 | None:intergenic |
| ATCTCATCGTTCGAACTCAC+CGG | 0.514536 | 7.4:+4769049 | None:intergenic |
| GAGGCTTACGTCACTCGTGC+TGG | 0.515014 | 7.4:-4769103 | MS.gene050794:CDS |
| TGCGAGCAACGGCGGCGTCG+TGG | 0.515359 | 7.4:+4769440 | None:intergenic |
| TATTGAGATGGGAGAGATGT+TGG | 0.515966 | 7.4:-4768546 | MS.gene050794:CDS |
| TCATGAAGCTGTTATTGAGA+TGG | 0.517176 | 7.4:-4768558 | MS.gene050794:CDS |
| TTCACAAAATCCAAAGCCTC+AGG | 0.517597 | 7.4:+4768620 | None:intergenic |
| TGTGCTAGTATGGTTATGGT+TGG | 0.517681 | 7.4:-4768482 | MS.gene050794:CDS |
| TCAGGTTTACAATAAGGTTG+AGG | 0.518411 | 7.4:-4768306 | MS.gene050794:CDS |
| TGGGAAGAAAATTAGATTAG+CGG | 0.519668 | 7.4:-4768984 | MS.gene050794:CDS |
| GGAGAAGTTGATCCTGTGAC+GGG | 0.520323 | 7.4:-4768347 | MS.gene050794:CDS |
| GAGCGGGAGTTGTTGATGGC+GGG | 0.526225 | 7.4:+4769307 | None:intergenic |
| ATCCTTGCATACCCCGTCAC+AGG | 0.526371 | 7.4:+4768335 | None:intergenic |
| GCTTACGTCACTCGTGCTGG+TGG | 0.534182 | 7.4:-4769100 | MS.gene050794:CDS |
| GATTAGCTGTGGAAAGTGCT+TGG | 0.535436 | 7.4:-4768679 | MS.gene050794:CDS |
| ATTCAGATTTGCAGAGAGGA+AGG | 0.535547 | 7.4:-4768908 | MS.gene050794:CDS |
| TTGTGTTGTGATTCCTGTGA+AGG | 0.536135 | 7.4:-4768936 | MS.gene050794:CDS |
| TTTGTGAATAGGTTTGAAGG+AGG | 0.542364 | 7.4:-4768605 | MS.gene050794:CDS |
| TTGAAGAACGATAGCGGCAG+CGG | 0.542798 | 7.4:+4769219 | None:intergenic |
| AAGAATCCTAAAACTGGTGG+TGG | 0.543301 | 7.4:-4768743 | MS.gene050794:CDS |
| TCGTTCTTCAACACACCGCT+TGG | 0.548558 | 7.4:-4769207 | MS.gene050794:CDS |
| GGATTATAGTGCTCAATTGG+TGG | 0.548906 | 7.4:-4768645 | MS.gene050794:CDS |
| TATTATAGACCGCCTAGAGA+TGG | 0.549269 | 7.4:-4768368 | MS.gene050794:CDS |
| TTGTTGAGCGGAGAGGATGG+AGG | 0.550877 | 7.4:+4769387 | None:intergenic |
| TTCGGATTCAATTTCTGAAG+CGG | 0.551203 | 7.4:+4769471 | None:intergenic |
| GTGGTTGAAGTAGAAGTGAT+CGG | 0.552344 | 7.4:+4769336 | None:intergenic |
| GGATCAACTTCTCCATCTCT+AGG | 0.560116 | 7.4:+4768356 | None:intergenic |
| TTGTGAATAGGTTTGAAGGA+GGG | 0.560493 | 7.4:-4768604 | MS.gene050794:CDS |
| CGGTGCTGTTAAGAAATCCA+TGG | 0.563542 | 7.4:-4769125 | MS.gene050794:CDS |
| TATGTGTGCTAGTATGGTTA+TGG | 0.563666 | 7.4:-4768486 | MS.gene050794:CDS |
| ACCGCTTGGTGTTTCCGTGA+AGG | 0.567042 | 7.4:-4769193 | MS.gene050794:CDS |
| ATCCTGTGACGGGGTATGCA+AGG | 0.567684 | 7.4:-4768337 | MS.gene050794:CDS |
| TGTTGATGGCGGGTTTGAGG+TGG | 0.569954 | 7.4:+4769317 | None:intergenic |
| TTGTTGTTGAGCGGAGAGGA+TGG | 0.571920 | 7.4:+4769384 | None:intergenic |
| CTTCTAACCCCAAAACAAGT+AGG | 0.572030 | 7.4:+4768455 | None:intergenic |
| GAGCAACGGCGGCGTCGTGG+TGG | 0.574824 | 7.4:+4769443 | None:intergenic |
| TGAGCGGGAGTTGTTGATGG+CGG | 0.579147 | 7.4:+4769306 | None:intergenic |
| ACGAGTGACGTAAGCCTCCA+TGG | 0.579833 | 7.4:+4769108 | None:intergenic |
| GCCGTTGTTAATGCGAGCAA+CGG | 0.580937 | 7.4:+4769429 | None:intergenic |
| CGTGAAGGTAAATTCAACAA+AGG | 0.583292 | 7.4:-4769178 | MS.gene050794:CDS |
| TCCTCTCCGCTCAACAACAA+TGG | 0.589663 | 7.4:-4769381 | MS.gene050794:CDS |
| AAGAACGATAGCGGCAGCGG+TGG | 0.595842 | 7.4:+4769222 | None:intergenic |
| GGATTGAAGGGATTAAGAAG+AGG | 0.605374 | 7.4:-4768583 | MS.gene050794:CDS |
| GTTGTTAATGCGAGCAACGG+CGG | 0.605939 | 7.4:+4769432 | None:intergenic |
| CAAACCCATTATCCACCAGT+TGG | 0.606103 | 7.4:+4768255 | None:intergenic |
| CGTTGATGTCTGGGATTGAA+CGG | 0.606898 | 7.4:+4769545 | None:intergenic |
| AAGTGCTTGGATTGGCACAA+GGG | 0.608531 | 7.4:-4768666 | MS.gene050794:CDS |
| TGAGCGGAGAGGATGGAGGA+AGG | 0.608798 | 7.4:+4769391 | None:intergenic |
| AAAGTGCTTGGATTGGCACA+AGG | 0.608859 | 7.4:-4768667 | MS.gene050794:CDS |
| TGGAGAAGTTGATCCTGTGA+CGG | 0.611129 | 7.4:-4768348 | MS.gene050794:CDS |
| CTTACGTCACTCGTGCTGGT+GGG | 0.625874 | 7.4:-4769099 | MS.gene050794:CDS |
| GAGATGTTGGTGAAAGCTTG+GGG | 0.626746 | 7.4:-4768533 | MS.gene050794:CDS |
| GCTGTGGAAAGTGCTTGGAT+TGG | 0.627748 | 7.4:-4768674 | MS.gene050794:CDS |
| GGATGCTGTTAACCAACTGG+TGG | 0.628649 | 7.4:-4768267 | MS.gene050794:CDS |
| CGTTCAATCCCAGACATCAA+CGG | 0.631260 | 7.4:-4769544 | MS.gene050794:CDS |
| GAACTCACCGGAAAAGGTAA+CGG | 0.632522 | 7.4:+4769061 | None:intergenic |
| TTCACAGGAATCACAACACA+AGG | 0.634069 | 7.4:+4768938 | None:intergenic |
| GAGCTGCCATTGTTGTTGAG+CGG | 0.646361 | 7.4:+4769375 | None:intergenic |
| GCCGTTGCTCGCATTAACAA+CGG | 0.653714 | 7.4:-4769430 | MS.gene050794:CDS |
| ATTGATTCAGATTTGCAGAG+AGG | 0.659380 | 7.4:-4768912 | MS.gene050794:CDS |
| GCCATTGTTGTTGAGCGGAG+AGG | 0.662976 | 7.4:+4769380 | None:intergenic |
| GTATGGAAATGGATTAGCTG+TGG | 0.664004 | 7.4:-4768690 | MS.gene050794:CDS |
| ATTCTGATGCACTTAAGCTG+AGG | 0.681621 | 7.4:-4768430 | MS.gene050794:CDS |
| ACCTTCACGGAAACACCAAG+CGG | 0.702367 | 7.4:+4769192 | None:intergenic |
| GGTGTGTTGAAGAACGATAG+CGG | 0.703992 | 7.4:+4769213 | None:intergenic |
| GAGAAGTTGATCCTGTGACG+GGG | 0.718707 | 7.4:-4768346 | MS.gene050794:CDS |
| TGATGTCTGGGATTGAACGG+TGG | 0.732551 | 7.4:+4769548 | None:intergenic |
| TGCTGTTAAGAAATCCATGG+AGG | 0.736216 | 7.4:-4769122 | MS.gene050794:CDS |
| TCAACTTCTCCATCTCTAGG+CGG | 0.748440 | 7.4:+4768359 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAATTGGAAGAAGATAGTTT+AGG | + | chr7.4:4768307-4768326 | None:intergenic | 25.0% |
| ! | ACTAAAAAGAATCCTAAAAC+TGG | - | chr7.4:4769054-4769073 | MS.gene050794:CDS | 25.0% |
| ! | TTCTTATCAGGTTTACAATA+AGG | - | chr7.4:4769491-4769510 | MS.gene050794:CDS | 25.0% |
| !! | ATACTAGTAATTTGCATAAG+TGG | - | chr7.4:4768998-4769017 | MS.gene050794:CDS | 25.0% |
| !!! | AAGATAGTTTAGGTTTTTTG+GGG | + | chr7.4:4768297-4768316 | None:intergenic | 25.0% |
| !!! | AGAAGATAGTTTAGGTTTTT+TGG | + | chr7.4:4768299-4768318 | None:intergenic | 25.0% |
| !!! | GAAGATAGTTTAGGTTTTTT+GGG | + | chr7.4:4768298-4768317 | None:intergenic | 25.0% |
| !!! | TTAGAAAAGCTTTGGAAAAA+GGG | - | chr7.4:4768788-4768807 | MS.gene050794:CDS | 25.0% |
| !!! | TTTAGAAAAGCTTTGGAAAA+AGG | - | chr7.4:4768787-4768806 | MS.gene050794:CDS | 25.0% |
| AAAAAGAATCCTAAAACTGG+TGG | - | chr7.4:4769057-4769076 | MS.gene050794:CDS | 30.0% | |
| ATACTAGCACACATATGTTT+CGG | + | chr7.4:4769312-4769331 | None:intergenic | 30.0% | |
| CTTTGTTGAATTTACCTTCA+CGG | + | chr7.4:4768627-4768646 | None:intergenic | 30.0% | |
| GATGTTGATATGCAAGATAT+TGG | - | chr7.4:4768964-4768983 | MS.gene050794:CDS | 30.0% | |
| GTTATGCTTCATTATGCTTA+CGG | - | chr7.4:4768658-4768677 | MS.gene050794:CDS | 30.0% | |
| TGGGAAGAAAATTAGATTAG+CGG | - | chr7.4:4768819-4768838 | MS.gene050794:CDS | 30.0% | |
| TTGAGGACTATTACAAGTTT+CGG | - | chr7.4:4769514-4769533 | MS.gene050794:CDS | 30.0% | |
| ! | GATTTTGTGAATAGGTTTGA+AGG | - | chr7.4:4769195-4769214 | MS.gene050794:CDS | 30.0% |
| !!! | AGATAGTTTAGGTTTTTTGG+GGG | + | chr7.4:4768296-4768315 | None:intergenic | 30.0% |
| AAGGGATTATAGTGCTCAAT+TGG | - | chr7.4:4769155-4769174 | MS.gene050794:CDS | 35.0% | |
| ATCTGAATCAATTCCTTCAC+AGG | + | chr7.4:4768883-4768902 | None:intergenic | 35.0% | |
| CATGAAGCTGTTATTGAGAT+GGG | - | chr7.4:4769246-4769265 | MS.gene050794:CDS | 35.0% | |
| CGTGAAGGTAAATTCAACAA+AGG | - | chr7.4:4768625-4768644 | MS.gene050794:CDS | 35.0% | |
| CTAGGCGGTCTATAATATAT+AGG | + | chr7.4:4769432-4769451 | None:intergenic | 35.0% | |
| GAAACATATGTGTGCTAGTA+TGG | - | chr7.4:4769311-4769330 | MS.gene050794:CDS | 35.0% | |
| GACTGAGTTTAGAAAAGCTT+TGG | - | chr7.4:4768780-4768799 | MS.gene050794:CDS | 35.0% | |
| GTATGCAAGGATTTCTTATC+AGG | - | chr7.4:4769479-4769498 | MS.gene050794:CDS | 35.0% | |
| TATGTGTGCTAGTATGGTTA+TGG | - | chr7.4:4769317-4769336 | MS.gene050794:CDS | 35.0% | |
| TCAGGTTTACAATAAGGTTG+AGG | - | chr7.4:4769497-4769516 | MS.gene050794:CDS | 35.0% | |
| TCATGAAGCTGTTATTGAGA+TGG | - | chr7.4:4769245-4769264 | MS.gene050794:CDS | 35.0% | |
| TGAGGACTATTACAAGTTTC+GGG | - | chr7.4:4769515-4769534 | MS.gene050794:CDS | 35.0% | |
| TTGGAAAAAGGGAAAGTTGA+TGG | - | chr7.4:4768799-4768818 | MS.gene050794:CDS | 35.0% | |
| TTGTGAATAGGTTTGAAGGA+GGG | - | chr7.4:4769199-4769218 | MS.gene050794:CDS | 35.0% | |
| TTTGTGAATAGGTTTGAAGG+AGG | - | chr7.4:4769198-4769217 | MS.gene050794:CDS | 35.0% | |
| ! | ACACATTTGAGGGATGTTTT+TGG | - | chr7.4:4769396-4769415 | MS.gene050794:CDS | 35.0% |
| ! | ATTGATTCAGATTTGCAGAG+AGG | - | chr7.4:4768891-4768910 | MS.gene050794:CDS | 35.0% |
| ! | TGGAAAAAGGGAAAGTTGAT+GGG | - | chr7.4:4768800-4768819 | MS.gene050794:CDS | 35.0% |
| ! | TTAACCAACTGGTGGATAAT+GGG | - | chr7.4:4769544-4769563 | MS.gene050794:CDS | 35.0% |
| ! | TTCGGATTCAATTTCTGAAG+CGG | + | chr7.4:4768335-4768354 | None:intergenic | 35.0% |
| !!! | AGGCTTTGGATTTTGTGAAT+AGG | - | chr7.4:4769187-4769206 | MS.gene050794:CDS | 35.0% |
| !!! | CTAGGTTTTGGATAATTGAG+CGG | + | chr7.4:4768516-4768535 | None:intergenic | 35.0% |
| !!! | TAGGTTTTGGATAATTGAGC+GGG | + | chr7.4:4768515-4768534 | None:intergenic | 35.0% |
| !!! | TTGGTTTGCCTACTTGTTTT+GGG | - | chr7.4:4769340-4769359 | MS.gene050794:CDS | 35.0% |
| AAGAATCCTAAAACTGGTGG+TGG | - | chr7.4:4769060-4769079 | MS.gene050794:CDS | 40.0% | |
| ATTCAGATTTGCAGAGAGGA+AGG | - | chr7.4:4768895-4768914 | MS.gene050794:CDS | 40.0% | |
| ATTCTGATGCACTTAAGCTG+AGG | - | chr7.4:4769373-4769392 | MS.gene050794:CDS | 40.0% | |
| CTTCTAACCCCAAAACAAGT+AGG | + | chr7.4:4769351-4769370 | None:intergenic | 40.0% | |
| GGATTATAGTGCTCAATTGG+TGG | - | chr7.4:4769158-4769177 | MS.gene050794:CDS | 40.0% | |
| GGATTGAAGGGATTAAGAAG+AGG | - | chr7.4:4769220-4769239 | MS.gene050794:CDS | 40.0% | |
| GTATACAAAAACGCGATCGA+AGG | + | chr7.4:4769036-4769055 | None:intergenic | 40.0% | |
| GTGGTTGAAGTAGAAGTGAT+CGG | + | chr7.4:4768470-4768489 | None:intergenic | 40.0% | |
| GTGTCTCATGAGTATGGAAA+TGG | - | chr7.4:4769102-4769121 | MS.gene050794:CDS | 40.0% | |
| TAAGCTGAGGACACATTTGA+GGG | - | chr7.4:4769386-4769405 | MS.gene050794:CDS | 40.0% | |
| TATTATAGACCGCCTAGAGA+TGG | - | chr7.4:4769435-4769454 | MS.gene050794:CDS | 40.0% | |
| TATTGAGATGGGAGAGATGT+TGG | - | chr7.4:4769257-4769276 | MS.gene050794:CDS | 40.0% | |
| TGCTGTTAAGAAATCCATGG+AGG | - | chr7.4:4768681-4768700 | MS.gene050794:CDS | 40.0% | |
| TGGTTGAAGTAGAAGTGATC+GGG | + | chr7.4:4768469-4768488 | None:intergenic | 40.0% | |
| TGTGCTAGTATGGTTATGGT+TGG | - | chr7.4:4769321-4769340 | MS.gene050794:CDS | 40.0% | |
| TTAAGCTGAGGACACATTTG+AGG | - | chr7.4:4769385-4769404 | MS.gene050794:CDS | 40.0% | |
| TTCACAAAATCCAAAGCCTC+AGG | + | chr7.4:4769186-4769205 | None:intergenic | 40.0% | |
| TTCACAGGAATCACAACACA+AGG | + | chr7.4:4768868-4768887 | None:intergenic | 40.0% | |
| TTGTGTTGTGATTCCTGTGA+AGG | - | chr7.4:4768867-4768886 | MS.gene050794:CDS | 40.0% | |
| ! | AAATCACCACCACCAGTTTT+AGG | + | chr7.4:4769069-4769088 | None:intergenic | 40.0% |
| ! | AGAGATGTTGGTGAAAGCTT+GGG | - | chr7.4:4769269-4769288 | MS.gene050794:CDS | 40.0% |
| ! | GTTAACCAACTGGTGGATAA+TGG | - | chr7.4:4769543-4769562 | MS.gene050794:CDS | 40.0% |
| ! | TGAAGTTCCGTTACCTTTTC+CGG | - | chr7.4:4768735-4768754 | MS.gene050794:CDS | 40.0% |
| !! | GTATGGAAATGGATTAGCTG+TGG | - | chr7.4:4769113-4769132 | MS.gene050794:CDS | 40.0% |
| !! | GTGGTGATTGTTTTTCTCAG+AGG | + | chr7.4:4768239-4768258 | None:intergenic | 40.0% |
| !! | TGATGTCTTTAGCGTTGACT+AGG | + | chr7.4:4768534-4768553 | None:intergenic | 40.0% |
| !! | TTCTGAAGCGGTGATGAAAT+TGG | + | chr7.4:4768323-4768342 | None:intergenic | 40.0% |
| !!! | AGTTTAGGTTTTTTGGGGGT+GGG | + | chr7.4:4768292-4768311 | None:intergenic | 40.0% |
| !!! | CTTTAGCGTTGACTAGGTTT+TGG | + | chr7.4:4768528-4768547 | None:intergenic | 40.0% |
| !!! | GTTGGTTTGCCTACTTGTTT+TGG | - | chr7.4:4769339-4769358 | MS.gene050794:CDS | 40.0% |
| !!! | TAGTTTAGGTTTTTTGGGGG+TGG | + | chr7.4:4768293-4768312 | None:intergenic | 40.0% |
| !!! | TGGTTTGCCTACTTGTTTTG+GGG | - | chr7.4:4769341-4769360 | MS.gene050794:CDS | 40.0% |
| AAAGCTTGGGGAACTCATCT+TGG | - | chr7.4:4769282-4769301 | MS.gene050794:CDS | 45.0% | |
| AAGCTTGGGGAACTCATCTT+GGG | - | chr7.4:4769283-4769302 | MS.gene050794:CDS | 45.0% | |
| AATTGAGCGGGAGTTGTTGA+TGG | + | chr7.4:4768503-4768522 | None:intergenic | 45.0% | |
| AGGTTTGAAGGAGGGATTGA+AGG | - | chr7.4:4769207-4769226 | MS.gene050794:CDS | 45.0% | |
| ATCTCATCGTTCGAACTCAC+CGG | + | chr7.4:4768757-4768776 | None:intergenic | 45.0% | |
| CAAACCCATTATCCACCAGT+TGG | + | chr7.4:4769551-4769570 | None:intergenic | 45.0% | |
| CCATACTCATGAGACACAAC+AGG | + | chr7.4:4769099-4769118 | None:intergenic | 45.0% | |
| CCTGTTGTGTCTCATGAGTA+TGG | - | chr7.4:4769096-4769115 | MS.gene050794:CDS | 45.0% | |
| CGTTCAATCCCAGACATCAA+CGG | - | chr7.4:4768259-4768278 | MS.gene050794:CDS | 45.0% | |
| GAACTCACCGGAAAAGGTAA+CGG | + | chr7.4:4768745-4768764 | None:intergenic | 45.0% | |
| GGATCAACTTCTCCATCTCT+AGG | + | chr7.4:4769450-4769469 | None:intergenic | 45.0% | |
| GGTGTGTTGAAGAACGATAG+CGG | + | chr7.4:4768593-4768612 | None:intergenic | 45.0% | |
| GGTTTGAAGGAGGGATTGAA+GGG | - | chr7.4:4769208-4769227 | MS.gene050794:CDS | 45.0% | |
| GTTGATGCTGCTCATGCAAT+TGG | - | chr7.4:4768934-4768953 | MS.gene050794:CDS | 45.0% | |
| TACAAAAACGCGATCGAAGG+TGG | + | chr7.4:4769033-4769052 | None:intergenic | 45.0% | |
| TCAACTTCTCCATCTCTAGG+CGG | + | chr7.4:4769447-4769466 | None:intergenic | 45.0% | |
| ! | CGTTGATGTCTGGGATTGAA+CGG | + | chr7.4:4768261-4768280 | None:intergenic | 45.0% |
| ! | GAGAGATGTTGGTGAAAGCT+TGG | - | chr7.4:4769268-4769287 | MS.gene050794:CDS | 45.0% |
| ! | GAGATGTTGGTGAAAGCTTG+GGG | - | chr7.4:4769270-4769289 | MS.gene050794:CDS | 45.0% |
| ! | TGGAGAAGTTGATCCTGTGA+CGG | - | chr7.4:4769455-4769474 | MS.gene050794:CDS | 45.0% |
| !! | AAAGTGCTTGGATTGGCACA+AGG | - | chr7.4:4769136-4769155 | MS.gene050794:CDS | 45.0% |
| !! | AAGTGCTTGGATTGGCACAA+GGG | - | chr7.4:4769137-4769156 | MS.gene050794:CDS | 45.0% |
| !! | CGGTGCTGTTAAGAAATCCA+TGG | - | chr7.4:4768678-4768697 | MS.gene050794:CDS | 45.0% |
| !! | GATTAGCTGTGGAAAGTGCT+TGG | - | chr7.4:4769124-4769143 | MS.gene050794:CDS | 45.0% |
| !!! | GTTTAGGTTTTTTGGGGGTG+GGG | + | chr7.4:4768291-4768310 | None:intergenic | 45.0% |
| ACCTTCACGGAAACACCAAG+CGG | + | chr7.4:4768614-4768633 | None:intergenic | 50.0% | |
| CGCATTAACAACGGCAGCTT+TGG | - | chr7.4:4768382-4768401 | MS.gene050794:CDS | 50.0% | |
| GCCGTTGCTCGCATTAACAA+CGG | - | chr7.4:4768373-4768392 | MS.gene050794:CDS | 50.0% | |
| GCCGTTGTTAATGCGAGCAA+CGG | + | chr7.4:4768377-4768396 | None:intergenic | 50.0% | |
| GGATGCTGTTAACCAACTGG+TGG | - | chr7.4:4769536-4769555 | MS.gene050794:CDS | 50.0% | |
| GTTGTTAATGCGAGCAACGG+CGG | + | chr7.4:4768374-4768393 | None:intergenic | 50.0% | |
| TCCTCTCCGCTCAACAACAA+TGG | - | chr7.4:4768422-4768441 | MS.gene050794:CDS | 50.0% | |
| TCGGGATGCTGTTAACCAAC+TGG | - | chr7.4:4769533-4769552 | MS.gene050794:CDS | 50.0% | |
| TCGTTCGAACTCACCGGAAA+AGG | + | chr7.4:4768751-4768770 | None:intergenic | 50.0% | |
| TCGTTCTTCAACACACCGCT+TGG | - | chr7.4:4768596-4768615 | MS.gene050794:CDS | 50.0% | |
| ! | ATTGGTGGTTCCTGAGGCTT+TGG | - | chr7.4:4769173-4769192 | MS.gene050794:CDS | 50.0% |
| ! | GAGAAGTTGATCCTGTGACG+GGG | - | chr7.4:4769457-4769476 | MS.gene050794:CDS | 50.0% |
| ! | GAGCTGCCATTGTTGTTGAG+CGG | + | chr7.4:4768431-4768450 | None:intergenic | 50.0% |
| ! | GGAGAAGTTGATCCTGTGAC+GGG | - | chr7.4:4769456-4769475 | MS.gene050794:CDS | 50.0% |
| ! | TGATGTCTGGGATTGAACGG+TGG | + | chr7.4:4768258-4768277 | None:intergenic | 50.0% |
| ! | TGCTCAATTGGTGGTTCCTG+AGG | - | chr7.4:4769167-4769186 | MS.gene050794:CDS | 50.0% |
| ! | TTGAAGAACGATAGCGGCAG+CGG | + | chr7.4:4768587-4768606 | None:intergenic | 50.0% |
| ! | TTGTTGTTGAGCGGAGAGGA+TGG | + | chr7.4:4768422-4768441 | None:intergenic | 50.0% |
| !! | AGTTGTTGATGGCGGGTTTG+AGG | + | chr7.4:4768492-4768511 | None:intergenic | 50.0% |
| !! | CAGAGAGGAAGGTGTTGAAC+AGG | - | chr7.4:4768906-4768925 | MS.gene050794:CDS | 50.0% |
| !! | GCTGTGGAAAGTGCTTGGAT+TGG | - | chr7.4:4769129-4769148 | MS.gene050794:CDS | 50.0% |
| ACGAGTGACGTAAGCCTCCA+TGG | + | chr7.4:4768698-4768717 | None:intergenic | 55.0% | |
| ATCCTTGCATACCCCGTCAC+AGG | + | chr7.4:4769471-4769490 | None:intergenic | 55.0% | |
| TTGTTGAGCGGAGAGGATGG+AGG | + | chr7.4:4768419-4768438 | None:intergenic | 55.0% | |
| ! | ATCCTGTGACGGGGTATGCA+AGG | - | chr7.4:4769466-4769485 | MS.gene050794:CDS | 55.0% |
| ! | CTTACGTCACTCGTGCTGGT+GGG | - | chr7.4:4768704-4768723 | MS.gene050794:CDS | 55.0% |
| ! | GCCATTGTTGTTGAGCGGAG+AGG | + | chr7.4:4768426-4768445 | None:intergenic | 55.0% |
| ! | GGTGTGTGCCGTTGATGTCT+GGG | + | chr7.4:4768270-4768289 | None:intergenic | 55.0% |
| ! | TGAGCGGGAGTTGTTGATGG+CGG | + | chr7.4:4768500-4768519 | None:intergenic | 55.0% |
| !! | ACCGCTTGGTGTTTCCGTGA+AGG | - | chr7.4:4768610-4768629 | MS.gene050794:CDS | 55.0% |
| !! | TGTTGATGGCGGGTTTGAGG+TGG | + | chr7.4:4768489-4768508 | None:intergenic | 55.0% |
| GAGGCTTACGTCACTCGTGC+TGG | - | chr7.4:4768700-4768719 | MS.gene050794:CDS | 60.0% | |
| GCTTACGTCACTCGTGCTGG+TGG | - | chr7.4:4768703-4768722 | MS.gene050794:CDS | 60.0% | |
| GGAGAGGATGGAGGAAGGAC+AGG | + | chr7.4:4768410-4768429 | None:intergenic | 60.0% | |
| GGCGTCGTGGTGGCTGAATT+CGG | + | chr7.4:4768353-4768372 | None:intergenic | 60.0% | |
| TGAGCGGAGAGGATGGAGGA+AGG | + | chr7.4:4768415-4768434 | None:intergenic | 60.0% | |
| ! | AAGAACGATAGCGGCAGCGG+TGG | + | chr7.4:4768584-4768603 | None:intergenic | 60.0% |
| ! | GGGTGTGTGCCGTTGATGTC+TGG | + | chr7.4:4768271-4768290 | None:intergenic | 60.0% |
| !! | GAGCGGGAGTTGTTGATGGC+GGG | + | chr7.4:4768499-4768518 | None:intergenic | 60.0% |
| ! | AACGATAGCGGCAGCGGTGG+TGG | + | chr7.4:4768581-4768600 | None:intergenic | 65.0% |
| GAGCAACGGCGGCGTCGTGG+TGG | + | chr7.4:4768363-4768382 | None:intergenic | 75.0% | |
| TGCGAGCAACGGCGGCGTCG+TGG | + | chr7.4:4768366-4768385 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 4768232 | 4769593 | 4768232 | ID=MS.gene050794 |
| chr7.4 | mRNA | 4768232 | 4769593 | 4768232 | ID=MS.gene050794.t1;Parent=MS.gene050794 |
| chr7.4 | exon | 4768232 | 4769593 | 4768232 | ID=MS.gene050794.t1.exon1;Parent=MS.gene050794.t1 |
| chr7.4 | CDS | 4768232 | 4769593 | 4768232 | ID=cds.MS.gene050794.t1;Parent=MS.gene050794.t1 |
| Gene Sequence |
| Protein sequence |
