Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20907.t1 | XP_003591309.1 | 96.7 | 449 | 15 | 0 | 3 | 451 | 2 | 450 | 2.90E-253 | 884 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20907.t1 | Q9M1R1 | 64.9 | 450 | 148 | 2 | 1 | 449 | 12 | 452 | 3.2e-176 | 619.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20907.t1 | G7IBQ9 | 96.7 | 449 | 15 | 0 | 3 | 451 | 2 | 450 | 2.1e-253 | 884.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052287 | MS.gene20907 | 0.814749 | 1.31E-51 | -1.69E-46 |
| MS.gene056452 | MS.gene20907 | 0.805293 | 1.43E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene20907 | MS.gene072597 | PPI |
| MS.gene20907 | MS.gene072599 | PPI |
| MS.gene20907 | MS.gene050794 | PPI |
| MS.gene20907 | MS.gene23100 | PPI |
| MS.gene050796 | MS.gene20907 | PPI |
| MS.gene20907 | MS.gene22776 | PPI |
| MS.gene20907 | MS.gene072595 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20907.t1 | MTR_1g086070 | 96.659 | 449 | 15 | 0 | 3 | 451 | 2 | 450 | 0.0 | 903 |
| MS.gene20907.t1 | MTR_7g111540 | 60.179 | 447 | 165 | 4 | 10 | 450 | 16 | 455 | 0.0 | 563 |
| MS.gene20907.t1 | MTR_1g484920 | 58.036 | 448 | 176 | 5 | 5 | 448 | 4 | 443 | 0.0 | 526 |
| MS.gene20907.t1 | MTR_1g484920 | 51.794 | 446 | 164 | 5 | 5 | 448 | 4 | 400 | 1.83e-154 | 444 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20907.t1 | AT3G62130 | 64.889 | 450 | 148 | 2 | 1 | 449 | 12 | 452 | 0.0 | 635 |
| MS.gene20907.t1 | AT3G62130 | 64.889 | 450 | 148 | 2 | 1 | 449 | 12 | 452 | 0.0 | 635 |
| MS.gene20907.t1 | AT5G26600 | 60.179 | 447 | 164 | 4 | 10 | 448 | 33 | 473 | 0.0 | 530 |
| MS.gene20907.t1 | AT5G26600 | 60.179 | 447 | 164 | 4 | 10 | 448 | 33 | 473 | 0.0 | 530 |
Find 134 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGGTATGGTTGTGAAAA+TGG | 0.157149 | 1.3:+61026221 | MS.gene20907:CDS |
| ATGTTAGTAATTTGTATAAA+TGG | 0.173706 | 1.3:+61025980 | MS.gene20907:CDS |
| GCTTGTGGTGCCGTCGATTA+TGG | 0.241155 | 1.3:+61026149 | MS.gene20907:CDS |
| TGAGGTTGAATTACCGTTTC+CGG | 0.253269 | 1.3:+61025717 | MS.gene20907:CDS |
| GACTGCAATTATTCAGCTTT+TGG | 0.256976 | 1.3:+61026530 | MS.gene20907:CDS |
| TTCCGGTTAGGGAATTGATT+AGG | 0.279390 | 1.3:+61025860 | MS.gene20907:CDS |
| TGAAGTTCCTGTGTATTATC+AGG | 0.286901 | 1.3:+61026398 | MS.gene20907:CDS |
| AGCGGAGCTGCCAGGTGGTT+TGG | 0.290209 | 1.3:-61025414 | None:intergenic |
| AATGTTGATGTTAAGGAAAT+TGG | 0.294275 | 1.3:+61025946 | MS.gene20907:CDS |
| ACACTGTTGATGATTATAAT+AGG | 0.298624 | 1.3:+61026502 | MS.gene20907:CDS |
| GCGGAGCTGCCAGGTGGTTT+GGG | 0.312446 | 1.3:-61025413 | None:intergenic |
| GTTGATGGTGCTCATGCTTT+AGG | 0.316255 | 1.3:+61025916 | MS.gene20907:CDS |
| TGATTATTCAGTCACTCTTT+AGG | 0.324233 | 1.3:-61026579 | None:intergenic |
| GATAAGGATGGGTTTATAAC+TGG | 0.327185 | 1.3:+61026450 | MS.gene20907:CDS |
| ATCATACTCGCACACATTTC+AGG | 0.329450 | 1.3:-61026288 | None:intergenic |
| TCCGGTTAGGGAATTGATTA+GGG | 0.334111 | 1.3:+61025861 | MS.gene20907:CDS |
| CGACGTCATCGGCATTGATT+AGG | 0.342101 | 1.3:-61025513 | None:intergenic |
| AAATTATAACACTGTCATTT+CGG | 0.342626 | 1.3:-61025624 | None:intergenic |
| AGATTAACGGTGGGAGAGTT+AGG | 0.343995 | 1.3:+61025794 | MS.gene20907:CDS |
| TGGTTTGCCTTCAAAGATTC+GGG | 0.346535 | 1.3:+61026317 | MS.gene20907:CDS |
| AAGTTTGAATGTTGATGTTA+AGG | 0.365457 | 1.3:+61025939 | MS.gene20907:CDS |
| ATTTCCTCGTTGGAATTAAC+CGG | 0.370491 | 1.3:-61025736 | None:intergenic |
| CAAGCGTGGGGTACAAATCT+TGG | 0.376935 | 1.3:+61026258 | MS.gene20907:CDS |
| ATGATGATGCTTCGAGGTTA+AGG | 0.380388 | 1.3:+61026349 | MS.gene20907:CDS |
| TTCAGTTGTTATTCCGGTTA+GGG | 0.382319 | 1.3:+61025849 | MS.gene20907:CDS |
| TTGGTTTGCCTTCAAAGATT+CGG | 0.383079 | 1.3:+61026316 | MS.gene20907:CDS |
| CTTCAGTTGTTATTCCGGTT+AGG | 0.388055 | 1.3:+61025848 | MS.gene20907:CDS |
| GTGCGACGGCGGTTTGGTGG+TGG | 0.388236 | 1.3:-61025342 | None:intergenic |
| CCGGTGGTGGCGCATGAGTA+TGG | 0.390433 | 1.3:+61026072 | MS.gene20907:CDS |
| GTTTGCCTGCTGAGAGTGCT+TGG | 0.391339 | 1.3:+61026100 | MS.gene20907:CDS |
| GGCTGAACGGTGCCGTTTCG+AGG | 0.394109 | 1.3:-61025256 | None:intergenic |
| CTGCTGAGAGTGCTTGGGTT+GGG | 0.396233 | 1.3:+61026106 | MS.gene20907:CDS |
| GTCATTTCGGCAGAACTTAC+CGG | 0.396727 | 1.3:-61025611 | None:intergenic |
| AAGAAGTTCGTGTGAGGAAA+TGG | 0.397728 | 1.3:-61025308 | None:intergenic |
| ACCCTAATCAATTCCCTAAC+CGG | 0.397893 | 1.3:-61025862 | None:intergenic |
| GATGCCTTCAGTTGTTATTC+CGG | 0.407025 | 1.3:+61025843 | MS.gene20907:CDS |
| TTATGTGAGGATTTCTCATC+AGG | 0.407288 | 1.3:+61026473 | MS.gene20907:CDS |
| CGGTTTGAAGGTGGAATTGA+AGG | 0.407550 | 1.3:+61026183 | MS.gene20907:CDS |
| CGAATCAACAACGGCAGCTT+CGG | 0.409299 | 1.3:+61025364 | MS.gene20907:CDS |
| GGTGGTTTGGGCGGTGAGGA+TGG | 0.410822 | 1.3:-61025401 | None:intergenic |
| CGAAATTTCTTCGACGTCAT+CGG | 0.417067 | 1.3:-61025524 | None:intergenic |
| GAAATGGAGTGAGTGAGTTT+TGG | 0.421190 | 1.3:-61025292 | None:intergenic |
| AACGATGGCAGCAGCGGTGG+TGG | 0.434975 | 1.3:-61025560 | None:intergenic |
| CATGGTATGGTTGTGAAAAT+GGG | 0.436733 | 1.3:+61026222 | MS.gene20907:CDS |
| CTCATCACCCGAATCTTTGA+AGG | 0.440821 | 1.3:-61026324 | None:intergenic |
| TTTGCCTGCTGAGAGTGCTT+GGG | 0.445854 | 1.3:+61026101 | MS.gene20907:CDS |
| CCTGCTGAGAGTGCTTGGGT+TGG | 0.453877 | 1.3:+61026105 | MS.gene20907:CDS |
| TGATTCGTGCGACGGCGGTT+TGG | 0.456057 | 1.3:-61025348 | None:intergenic |
| TTTGGGCGGTGAGGATGGAG+CGG | 0.462678 | 1.3:-61025396 | None:intergenic |
| TTGGGCGGTGAGGATGGAGC+GGG | 0.468335 | 1.3:-61025395 | None:intergenic |
| GCCATCGTTCTTCAACAAAT+CGG | 0.471082 | 1.3:+61025574 | MS.gene20907:CDS |
| TGCGACGGCGGTTTGGTGGT+GGG | 0.473641 | 1.3:-61025341 | None:intergenic |
| ATTGAAGGAGGGAAGATTAA+CGG | 0.474227 | 1.3:+61025781 | MS.gene20907:CDS |
| ATTATCGCGGAGTTTAAGAA+AGG | 0.474569 | 1.3:+61025757 | MS.gene20907:CDS |
| ATTGATTAGGGTTTGTAGAG+AGG | 0.478025 | 1.3:+61025873 | MS.gene20907:CDS |
| TGTGCGAGTATGATTATGAT+TGG | 0.478342 | 1.3:+61026297 | MS.gene20907:CDS |
| TATTATCAGGCTTTGAGAAA+TGG | 0.484635 | 1.3:+61026411 | MS.gene20907:CDS |
| GCCGTTGTTGATTCGTGCGA+CGG | 0.484870 | 1.3:-61025356 | None:intergenic |
| AAGCGTGGGGTACAAATCTT+GGG | 0.486188 | 1.3:+61026259 | MS.gene20907:CDS |
| GGTTTGTAGAGAGGAAGAAG+TGG | 0.491671 | 1.3:+61025882 | MS.gene20907:CDS |
| TGGGCGGTGAGGATGGAGCG+GGG | 0.491672 | 1.3:-61025394 | None:intergenic |
| TGTCGGTGGCTCTGTTATTG+AGG | 0.492187 | 1.3:+61025699 | MS.gene20907:CDS |
| GGCTTTGAGAAATGGTGAAA+GGG | 0.495516 | 1.3:+61026419 | MS.gene20907:CDS |
| TTTAAGAAAGGGATTGAAGG+AGG | 0.501661 | 1.3:+61025769 | MS.gene20907:CDS |
| CTCCGCGATAATTTCCTCGT+TGG | 0.502476 | 1.3:-61025746 | None:intergenic |
| ATTGAATGATGTTCATCATC+CGG | 0.504150 | 1.3:+61026053 | MS.gene20907:CDS |
| CGATTATGGAGTTTGTGAAT+CGG | 0.507392 | 1.3:+61026163 | MS.gene20907:CDS |
| TCGTTGGAATTAACCGGAAA+CGG | 0.508709 | 1.3:-61025730 | None:intergenic |
| GAGTTTGTGAATCGGTTTGA+AGG | 0.509546 | 1.3:+61026171 | MS.gene20907:CDS |
| TCCTCACCGCCCAAACCACC+TGG | 0.513224 | 1.3:+61025404 | MS.gene20907:CDS |
| GCTGAACGGTGCCGTTTCGA+GGG | 0.516516 | 1.3:-61025255 | None:intergenic |
| TTGAAGAAAGCGGAGCTGCC+AGG | 0.524309 | 1.3:-61025422 | None:intergenic |
| TACATAAACGCAACCGAAGG+TGG | 0.527019 | 1.3:-61026012 | None:intergenic |
| TTAAGAAAGGGATTGAAGGA+GGG | 0.529552 | 1.3:+61025770 | MS.gene20907:CDS |
| CCATACTCATGCGCCACCAC+CGG | 0.531694 | 1.3:-61026072 | None:intergenic |
| TTCGTGCGACGGCGGTTTGG+TGG | 0.534624 | 1.3:-61025345 | None:intergenic |
| TTTGTGAATCGGTTTGAAGG+TGG | 0.538570 | 1.3:+61026174 | MS.gene20907:CDS |
| TGAAAGGGATGCTAGAGATA+AGG | 0.538653 | 1.3:+61026434 | MS.gene20907:CDS |
| CCAACCCAAGCACTCTCAGC+AGG | 0.539864 | 1.3:-61026105 | None:intergenic |
| AACCACGACGACCCTCGAAA+CGG | 0.539957 | 1.3:+61025244 | MS.gene20907:CDS |
| GGTTATGTTGAAGCAAGCGT+GGG | 0.542634 | 1.3:+61026245 | MS.gene20907:CDS |
| AGGCTTTGAGAAATGGTGAA+AGG | 0.551471 | 1.3:+61026418 | MS.gene20907:CDS |
| GAGTTTAAGAAAGGGATTGA+AGG | 0.553891 | 1.3:+61025766 | MS.gene20907:CDS |
| TTTCTTTGAGTCTGGCTGAA+CGG | 0.554785 | 1.3:-61025269 | None:intergenic |
| AGGGATGCTAGAGATAAGGA+TGG | 0.555067 | 1.3:+61026438 | MS.gene20907:CDS |
| GAGAATCGAGGATTCCGTTA+CGG | 0.559303 | 1.3:-61025474 | None:intergenic |
| TTATCGCGGAGTTTAAGAAA+GGG | 0.562582 | 1.3:+61025758 | MS.gene20907:CDS |
| TTCTTCAACACCCTCCGTAA+CGG | 0.565314 | 1.3:+61025460 | MS.gene20907:CDS |
| AAGAACGATGGCAGCAGCGG+TGG | 0.568006 | 1.3:-61025563 | None:intergenic |
| GGGTTATGTTGAAGCAAGCG+TGG | 0.571041 | 1.3:+61026244 | MS.gene20907:CDS |
| GTGTTGAAGAAGAAGTCGTC+GGG | 0.572806 | 1.3:-61025448 | None:intergenic |
| GGTTTATAACTGGTTATGTG+AGG | 0.576418 | 1.3:+61026460 | MS.gene20907:CDS |
| TGATGTTCATCATCCGGTGG+TGG | 0.581615 | 1.3:+61026059 | MS.gene20907:CDS |
| TATGAAGAGGAACCATGGTA+TGG | 0.587034 | 1.3:+61026209 | MS.gene20907:CDS |
| AGATTATAGTCCTCAGCTTG+TGG | 0.589039 | 1.3:+61026134 | MS.gene20907:CDS |
| GGGATGCTAGAGATAAGGAT+GGG | 0.591264 | 1.3:+61026439 | MS.gene20907:CDS |
| AAGGAGGGAAGATTAACGGT+GGG | 0.591432 | 1.3:+61025785 | MS.gene20907:CDS |
| GGTTTGAAGGTGGAATTGAA+GGG | 0.591604 | 1.3:+61026184 | MS.gene20907:CDS |
| TCAATAACAGAGCCACCGAC+AGG | 0.591984 | 1.3:-61025697 | None:intergenic |
| GCCGATTTGTTGAAGAACGA+TGG | 0.592414 | 1.3:-61025575 | None:intergenic |
| GCCAGGTGGTTTGGGCGGTG+AGG | 0.592834 | 1.3:-61025405 | None:intergenic |
| GAGCTGCCAGGTGGTTTGGG+CGG | 0.593495 | 1.3:-61025410 | None:intergenic |
| GTGGCGCATGAGTATGGTAA+TGG | 0.597378 | 1.3:+61026078 | MS.gene20907:CDS |
| GAAGCTTATGTTATACCTGT+CGG | 0.603444 | 1.3:+61025682 | MS.gene20907:CDS |
| GAAGGAGGGAAGATTAACGG+TGG | 0.604748 | 1.3:+61025784 | MS.gene20907:CDS |
| TTGAAGAACGATGGCAGCAG+CGG | 0.609909 | 1.3:-61025566 | None:intergenic |
| ATGGTATGGTTGTGAAAATG+GGG | 0.613792 | 1.3:+61026223 | MS.gene20907:CDS |
| ATCGACGGCACCACAAGCTG+AGG | 0.616159 | 1.3:-61026144 | None:intergenic |
| CTCAAAGCCTGATAATACAC+AGG | 0.617796 | 1.3:-61026405 | None:intergenic |
| TAACAGCTTGATAAGCACAA+TGG | 0.618335 | 1.3:-61025648 | None:intergenic |
| GTTGTTGATTCGTGCGACGG+CGG | 0.618562 | 1.3:-61025353 | None:intergenic |
| TGAGTGATGATGATGCTTCG+AGG | 0.619097 | 1.3:+61026343 | MS.gene20907:CDS |
| GGTGTTGAAGAAGAAGTCGT+CGG | 0.621265 | 1.3:-61025449 | None:intergenic |
| CTAACCGGAATAACAACTGA+AGG | 0.626000 | 1.3:-61025847 | None:intergenic |
| ATCGAGGATTCCGTTACGGA+GGG | 0.629759 | 1.3:-61025470 | None:intergenic |
| ACTTACCGGAGGAAAATTGA+CGG | 0.631633 | 1.3:-61025597 | None:intergenic |
| TTCACAAACTCCATAATCGA+CGG | 0.638906 | 1.3:-61026159 | None:intergenic |
| GAATTGAAGGGATTATGAAG+AGG | 0.640801 | 1.3:+61026196 | MS.gene20907:CDS |
| TTCGTGAAGAAGTTCGTGTG+AGG | 0.642301 | 1.3:-61025314 | None:intergenic |
| CGTCGGGTTGTTGAAGAAAG+CGG | 0.644114 | 1.3:-61025432 | None:intergenic |
| TGCCGTTTCGAGGGTCGTCG+TGG | 0.649029 | 1.3:-61025246 | None:intergenic |
| GGGATTATGAAGAGGAACCA+TGG | 0.650885 | 1.3:+61026204 | MS.gene20907:CDS |
| CAATACATAAACGCAACCGA+AGG | 0.652956 | 1.3:-61026015 | None:intergenic |
| AATCGAGGATTCCGTTACGG+AGG | 0.662241 | 1.3:-61025471 | None:intergenic |
| TTCCAACGAGGAAATTATCG+CGG | 0.665860 | 1.3:+61025744 | MS.gene20907:CDS |
| GCTTATGTTATACCTGTCGG+TGG | 0.674775 | 1.3:+61025685 | MS.gene20907:CDS |
| GTTATGTTGAAGCAAGCGTG+GGG | 0.691208 | 1.3:+61026246 | MS.gene20907:CDS |
| AAGAAAGCGGAGCTGCCAGG+TGG | 0.699750 | 1.3:-61025419 | None:intergenic |
| ATTTCGGCAGAACTTACCGG+AGG | 0.711142 | 1.3:-61025608 | None:intergenic |
| GAATGATGTTCATCATCCGG+TGG | 0.719802 | 1.3:+61026056 | MS.gene20907:CDS |
| GCCGTCGCACGAATCAACAA+CGG | 0.725169 | 1.3:+61025355 | MS.gene20907:CDS |
| ATACTCGCACACATTTCAGG+CGG | 0.737674 | 1.3:-61026285 | None:intergenic |
| TGGTATGGTTGTGAAAATGG+GGG | 0.742084 | 1.3:+61026224 | MS.gene20907:CDS |
| GTTTCCGGTTAATTCCAACG+AGG | 0.797229 | 1.3:+61025732 | MS.gene20907:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTTAGTAATTTGTATAAA+TGG | + | chr1.3:61025980-61025999 | MS.gene20907:CDS | 15.0% |
| !!! | AAATTATAACACTGTCATTT+CGG | - | chr1.3:61025627-61025646 | None:intergenic | 20.0% |
| ! | AAGTTTGAATGTTGATGTTA+AGG | + | chr1.3:61025939-61025958 | MS.gene20907:CDS | 25.0% |
| ! | AATGTTGATGTTAAGGAAAT+TGG | + | chr1.3:61025946-61025965 | MS.gene20907:CDS | 25.0% |
| !!! | ACACTGTTGATGATTATAAT+AGG | + | chr1.3:61026502-61026521 | MS.gene20907:CDS | 25.0% |
| ATTGAATGATGTTCATCATC+CGG | + | chr1.3:61026053-61026072 | MS.gene20907:CDS | 30.0% | |
| !! | ATTATTCAGCTTTTGGAAGA+TGG | + | chr1.3:61026537-61026556 | MS.gene20907:CDS | 30.0% |
| !! | GAGGTTAAGGTTTTATCTTA+GGG | + | chr1.3:61026362-61026381 | MS.gene20907:CDS | 30.0% |
| !! | TATTATCAGGCTTTGAGAAA+TGG | + | chr1.3:61026411-61026430 | MS.gene20907:CDS | 30.0% |
| ATGGTATGGTTGTGAAAATG+GGG | + | chr1.3:61026223-61026242 | MS.gene20907:CDS | 35.0% | |
| ATTATCGCGGAGTTTAAGAA+AGG | + | chr1.3:61025757-61025776 | MS.gene20907:CDS | 35.0% | |
| ATTGAAGGAGGGAAGATTAA+CGG | + | chr1.3:61025781-61025800 | MS.gene20907:CDS | 35.0% | |
| ATTGATTAGGGTTTGTAGAG+AGG | + | chr1.3:61025873-61025892 | MS.gene20907:CDS | 35.0% | |
| ATTTCCTCGTTGGAATTAAC+CGG | - | chr1.3:61025739-61025758 | None:intergenic | 35.0% | |
| CATGGTATGGTTGTGAAAAT+GGG | + | chr1.3:61026222-61026241 | MS.gene20907:CDS | 35.0% | |
| CGATTATGGAGTTTGTGAAT+CGG | + | chr1.3:61026163-61026182 | MS.gene20907:CDS | 35.0% | |
| GAAGCTTATGTTATACCTGT+CGG | + | chr1.3:61025682-61025701 | MS.gene20907:CDS | 35.0% | |
| GAATTGAAGGGATTATGAAG+AGG | + | chr1.3:61026196-61026215 | MS.gene20907:CDS | 35.0% | |
| GAGTTTAAGAAAGGGATTGA+AGG | + | chr1.3:61025766-61025785 | MS.gene20907:CDS | 35.0% | |
| GGTTTATAACTGGTTATGTG+AGG | + | chr1.3:61026460-61026479 | MS.gene20907:CDS | 35.0% | |
| TAACAGCTTGATAAGCACAA+TGG | - | chr1.3:61025651-61025670 | None:intergenic | 35.0% | |
| TGAAGTTCCTGTGTATTATC+AGG | + | chr1.3:61026398-61026417 | MS.gene20907:CDS | 35.0% | |
| TGTGCGAGTATGATTATGAT+TGG | + | chr1.3:61026297-61026316 | MS.gene20907:CDS | 35.0% | |
| TTAAGAAAGGGATTGAAGGA+GGG | + | chr1.3:61025770-61025789 | MS.gene20907:CDS | 35.0% | |
| TTATCGCGGAGTTTAAGAAA+GGG | + | chr1.3:61025758-61025777 | MS.gene20907:CDS | 35.0% | |
| TTATGTGAGGATTTCTCATC+AGG | + | chr1.3:61026473-61026492 | MS.gene20907:CDS | 35.0% | |
| TTCACAAACTCCATAATCGA+CGG | - | chr1.3:61026162-61026181 | None:intergenic | 35.0% | |
| TTTAAGAAAGGGATTGAAGG+AGG | + | chr1.3:61025769-61025788 | MS.gene20907:CDS | 35.0% | |
| ! | GACTGCAATTATTCAGCTTT+TGG | + | chr1.3:61026530-61026549 | MS.gene20907:CDS | 35.0% |
| ! | GATAAGGATGGGTTTATAAC+TGG | + | chr1.3:61026450-61026469 | MS.gene20907:CDS | 35.0% |
| ! | GTGGATCAGATTTTTGTTGA+TGG | + | chr1.3:61025901-61025920 | MS.gene20907:CDS | 35.0% |
| ! | TTCAGTTGTTATTCCGGTTA+GGG | + | chr1.3:61025849-61025868 | MS.gene20907:CDS | 35.0% |
| !! | CGAGGTTAAGGTTTTATCTT+AGG | + | chr1.3:61026361-61026380 | MS.gene20907:CDS | 35.0% |
| !! | TTGGTTTGCCTTCAAAGATT+CGG | + | chr1.3:61026316-61026335 | MS.gene20907:CDS | 35.0% |
| !!! | AGTTTTGGTTTCTTTGAGTC+TGG | - | chr1.3:61025280-61025299 | None:intergenic | 35.0% |
| AAGAAGTTCGTGTGAGGAAA+TGG | - | chr1.3:61025311-61025330 | None:intergenic | 40.0% | |
| ACCCTAATCAATTCCCTAAC+CGG | - | chr1.3:61025865-61025884 | None:intergenic | 40.0% | |
| ACTTACCGGAGGAAAATTGA+CGG | - | chr1.3:61025600-61025619 | None:intergenic | 40.0% | |
| AGATTATAGTCCTCAGCTTG+TGG | + | chr1.3:61026134-61026153 | MS.gene20907:CDS | 40.0% | |
| ATCATACTCGCACACATTTC+AGG | - | chr1.3:61026291-61026310 | None:intergenic | 40.0% | |
| CAATACATAAACGCAACCGA+AGG | - | chr1.3:61026018-61026037 | None:intergenic | 40.0% | |
| CCATGGTATGGTTGTGAAAA+TGG | + | chr1.3:61026221-61026240 | MS.gene20907:CDS | 40.0% | |
| CGAAATTTCTTCGACGTCAT+CGG | - | chr1.3:61025527-61025546 | None:intergenic | 40.0% | |
| CTAACCGGAATAACAACTGA+AGG | - | chr1.3:61025850-61025869 | None:intergenic | 40.0% | |
| CTCAAAGCCTGATAATACAC+AGG | - | chr1.3:61026408-61026427 | None:intergenic | 40.0% | |
| GCCATCGTTCTTCAACAAAT+CGG | + | chr1.3:61025574-61025593 | MS.gene20907:CDS | 40.0% | |
| GGTTTGAAGGTGGAATTGAA+GGG | + | chr1.3:61026184-61026203 | MS.gene20907:CDS | 40.0% | |
| TATGAAGAGGAACCATGGTA+TGG | + | chr1.3:61026209-61026228 | MS.gene20907:CDS | 40.0% | |
| TCCGGTTAGGGAATTGATTA+GGG | + | chr1.3:61025861-61025880 | MS.gene20907:CDS | 40.0% | |
| TCGTTGGAATTAACCGGAAA+CGG | - | chr1.3:61025733-61025752 | None:intergenic | 40.0% | |
| TGAAAGGGATGCTAGAGATA+AGG | + | chr1.3:61026434-61026453 | MS.gene20907:CDS | 40.0% | |
| TGAGGTTGAATTACCGTTTC+CGG | + | chr1.3:61025717-61025736 | MS.gene20907:CDS | 40.0% | |
| TGGTATGGTTGTGAAAATGG+GGG | + | chr1.3:61026224-61026243 | MS.gene20907:CDS | 40.0% | |
| TTCCAACGAGGAAATTATCG+CGG | + | chr1.3:61025744-61025763 | MS.gene20907:CDS | 40.0% | |
| TTCCGGTTAGGGAATTGATT+AGG | + | chr1.3:61025860-61025879 | MS.gene20907:CDS | 40.0% | |
| TTTCTTTGAGTCTGGCTGAA+CGG | - | chr1.3:61025272-61025291 | None:intergenic | 40.0% | |
| ! | ATGATGATGCTTCGAGGTTA+AGG | + | chr1.3:61026349-61026368 | MS.gene20907:CDS | 40.0% |
| ! | CCATTTTCACAACCATACCA+TGG | - | chr1.3:61026224-61026243 | None:intergenic | 40.0% |
| ! | CTTCAGTTGTTATTCCGGTT+AGG | + | chr1.3:61025848-61025867 | MS.gene20907:CDS | 40.0% |
| ! | GAAATGGAGTGAGTGAGTTT+TGG | - | chr1.3:61025295-61025314 | None:intergenic | 40.0% |
| ! | GATGCCTTCAGTTGTTATTC+CGG | + | chr1.3:61025843-61025862 | MS.gene20907:CDS | 40.0% |
| ! | TGATGATTTTGCGAGAATCG+AGG | - | chr1.3:61025489-61025508 | None:intergenic | 40.0% |
| ! | TGGTTTGCCTTCAAAGATTC+GGG | + | chr1.3:61026317-61026336 | MS.gene20907:CDS | 40.0% |
| !! | AGGCTTTGAGAAATGGTGAA+AGG | + | chr1.3:61026418-61026437 | MS.gene20907:CDS | 40.0% |
| !! | GAGTTTGTGAATCGGTTTGA+AGG | + | chr1.3:61026171-61026190 | MS.gene20907:CDS | 40.0% |
| !! | GGCTTTGAGAAATGGTGAAA+GGG | + | chr1.3:61026419-61026438 | MS.gene20907:CDS | 40.0% |
| !! | TTTGTGAATCGGTTTGAAGG+TGG | + | chr1.3:61026174-61026193 | MS.gene20907:CDS | 40.0% |
| !!! | ATGGTTTTTTTCGCCACCTT+CGG | + | chr1.3:61025999-61026018 | MS.gene20907:CDS | 40.0% |
| AAGCGTGGGGTACAAATCTT+GGG | + | chr1.3:61026259-61026278 | MS.gene20907:CDS | 45.0% | |
| AAGGAGGGAAGATTAACGGT+GGG | + | chr1.3:61025785-61025804 | MS.gene20907:CDS | 45.0% | |
| AGATTAACGGTGGGAGAGTT+AGG | + | chr1.3:61025794-61025813 | MS.gene20907:CDS | 45.0% | |
| AGGGATGCTAGAGATAAGGA+TGG | + | chr1.3:61026438-61026457 | MS.gene20907:CDS | 45.0% | |
| ATACTCGCACACATTTCAGG+CGG | - | chr1.3:61026288-61026307 | None:intergenic | 45.0% | |
| CGGTTTGAAGGTGGAATTGA+AGG | + | chr1.3:61026183-61026202 | MS.gene20907:CDS | 45.0% | |
| CTCATCACCCGAATCTTTGA+AGG | - | chr1.3:61026327-61026346 | None:intergenic | 45.0% | |
| GAATGATGTTCATCATCCGG+TGG | + | chr1.3:61026056-61026075 | MS.gene20907:CDS | 45.0% | |
| GAGAATCGAGGATTCCGTTA+CGG | - | chr1.3:61025477-61025496 | None:intergenic | 45.0% | |
| GCTTATGTTATACCTGTCGG+TGG | + | chr1.3:61025685-61025704 | MS.gene20907:CDS | 45.0% | |
| GGGATGCTAGAGATAAGGAT+GGG | + | chr1.3:61026439-61026458 | MS.gene20907:CDS | 45.0% | |
| GGGATTATGAAGAGGAACCA+TGG | + | chr1.3:61026204-61026223 | MS.gene20907:CDS | 45.0% | |
| GGTTATGTTGAAGCAAGCGT+GGG | + | chr1.3:61026245-61026264 | MS.gene20907:CDS | 45.0% | |
| GGTTTGTAGAGAGGAAGAAG+TGG | + | chr1.3:61025882-61025901 | MS.gene20907:CDS | 45.0% | |
| GTCATTTCGGCAGAACTTAC+CGG | - | chr1.3:61025614-61025633 | None:intergenic | 45.0% | |
| GTGTTGAAGAAGAAGTCGTC+GGG | - | chr1.3:61025451-61025470 | None:intergenic | 45.0% | |
| GTTATGTTGAAGCAAGCGTG+GGG | + | chr1.3:61026246-61026265 | MS.gene20907:CDS | 45.0% | |
| GTTTCCGGTTAATTCCAACG+AGG | + | chr1.3:61025732-61025751 | MS.gene20907:CDS | 45.0% | |
| TACATAAACGCAACCGAAGG+TGG | - | chr1.3:61026015-61026034 | None:intergenic | 45.0% | |
| TTCGTGAAGAAGTTCGTGTG+AGG | - | chr1.3:61025317-61025336 | None:intergenic | 45.0% | |
| TTCTTCAACACCCTCCGTAA+CGG | + | chr1.3:61025460-61025479 | MS.gene20907:CDS | 45.0% | |
| ! | GGTGTTGAAGAAGAAGTCGT+CGG | - | chr1.3:61025452-61025471 | None:intergenic | 45.0% |
| ! | TGAGTGATGATGATGCTTCG+AGG | + | chr1.3:61026343-61026362 | MS.gene20907:CDS | 45.0% |
| !! | GCCGATTTGTTGAAGAACGA+TGG | - | chr1.3:61025578-61025597 | None:intergenic | 45.0% |
| !! | GTTGATGGTGCTCATGCTTT+AGG | + | chr1.3:61025916-61025935 | MS.gene20907:CDS | 45.0% |
| AATCGAGGATTCCGTTACGG+AGG | - | chr1.3:61025474-61025493 | None:intergenic | 50.0% | |
| ATCGAGGATTCCGTTACGGA+GGG | - | chr1.3:61025473-61025492 | None:intergenic | 50.0% | |
| ATTTCGGCAGAACTTACCGG+AGG | - | chr1.3:61025611-61025630 | None:intergenic | 50.0% | |
| CAAGCGTGGGGTACAAATCT+TGG | + | chr1.3:61026258-61026277 | MS.gene20907:CDS | 50.0% | |
| CGAATCAACAACGGCAGCTT+CGG | + | chr1.3:61025364-61025383 | MS.gene20907:CDS | 50.0% | |
| CTCCGCGATAATTTCCTCGT+TGG | - | chr1.3:61025749-61025768 | None:intergenic | 50.0% | |
| GAAGGAGGGAAGATTAACGG+TGG | + | chr1.3:61025784-61025803 | MS.gene20907:CDS | 50.0% | |
| GGGTTATGTTGAAGCAAGCG+TGG | + | chr1.3:61026244-61026263 | MS.gene20907:CDS | 50.0% | |
| GTGGCGCATGAGTATGGTAA+TGG | + | chr1.3:61026078-61026097 | MS.gene20907:CDS | 50.0% | |
| TCAATAACAGAGCCACCGAC+AGG | - | chr1.3:61025700-61025719 | None:intergenic | 50.0% | |
| TGATGTTCATCATCCGGTGG+TGG | + | chr1.3:61026059-61026078 | MS.gene20907:CDS | 50.0% | |
| TTGAAGAACGATGGCAGCAG+CGG | - | chr1.3:61025569-61025588 | None:intergenic | 50.0% | |
| ! | ATCGGCCGTCAATTTTCCTC+CGG | + | chr1.3:61025592-61025611 | MS.gene20907:CDS | 50.0% |
| ! | CGTCGGGTTGTTGAAGAAAG+CGG | - | chr1.3:61025435-61025454 | None:intergenic | 50.0% |
| ! | TGTCGGTGGCTCTGTTATTG+AGG | + | chr1.3:61025699-61025718 | MS.gene20907:CDS | 50.0% |
| !! | CGACGTCATCGGCATTGATT+AGG | - | chr1.3:61025516-61025535 | None:intergenic | 50.0% |
| !! | TTTGCCTGCTGAGAGTGCTT+GGG | + | chr1.3:61026101-61026120 | MS.gene20907:CDS | 50.0% |
| AACCACGACGACCCTCGAAA+CGG | + | chr1.3:61025244-61025263 | MS.gene20907:CDS | 55.0% | |
| GCCGTCGCACGAATCAACAA+CGG | + | chr1.3:61025355-61025374 | MS.gene20907:CDS | 55.0% | |
| TTGAAGAAAGCGGAGCTGCC+AGG | - | chr1.3:61025425-61025444 | None:intergenic | 55.0% | |
| !! | CTGCTGAGAGTGCTTGGGTT+GGG | + | chr1.3:61026106-61026125 | MS.gene20907:CDS | 55.0% |
| !! | GCCGTTGTTGATTCGTGCGA+CGG | - | chr1.3:61025359-61025378 | None:intergenic | 55.0% |
| !! | GCTTGTGGTGCCGTCGATTA+TGG | + | chr1.3:61026149-61026168 | MS.gene20907:CDS | 55.0% |
| !! | GTTGTTGATTCGTGCGACGG+CGG | - | chr1.3:61025356-61025375 | None:intergenic | 55.0% |
| !! | GTTTGCCTGCTGAGAGTGCT+TGG | + | chr1.3:61026100-61026119 | MS.gene20907:CDS | 55.0% |
| AAGAAAGCGGAGCTGCCAGG+TGG | - | chr1.3:61025422-61025441 | None:intergenic | 60.0% | |
| AAGAACGATGGCAGCAGCGG+TGG | - | chr1.3:61025566-61025585 | None:intergenic | 60.0% | |
| ATCGACGGCACCACAAGCTG+AGG | - | chr1.3:61026147-61026166 | None:intergenic | 60.0% | |
| CCAACCCAAGCACTCTCAGC+AGG | - | chr1.3:61026108-61026127 | None:intergenic | 60.0% | |
| CCATACTCATGCGCCACCAC+CGG | - | chr1.3:61026075-61026094 | None:intergenic | 60.0% | |
| TGATTCGTGCGACGGCGGTT+TGG | - | chr1.3:61025351-61025370 | None:intergenic | 60.0% | |
| TTTGGGCGGTGAGGATGGAG+CGG | - | chr1.3:61025399-61025418 | None:intergenic | 60.0% | |
| !! | CCTGCTGAGAGTGCTTGGGT+TGG | + | chr1.3:61026105-61026124 | MS.gene20907:CDS | 60.0% |
| !! | GCTGAACGGTGCCGTTTCGA+GGG | - | chr1.3:61025258-61025277 | None:intergenic | 60.0% |
| AACGATGGCAGCAGCGGTGG+TGG | - | chr1.3:61025563-61025582 | None:intergenic | 65.0% | |
| AGCGGAGCTGCCAGGTGGTT+TGG | - | chr1.3:61025417-61025436 | None:intergenic | 65.0% | |
| GCGGAGCTGCCAGGTGGTTT+GGG | - | chr1.3:61025416-61025435 | None:intergenic | 65.0% | |
| TCCTCACCGCCCAAACCACC+TGG | + | chr1.3:61025404-61025423 | MS.gene20907:CDS | 65.0% | |
| TTGGGCGGTGAGGATGGAGC+GGG | - | chr1.3:61025398-61025417 | None:intergenic | 65.0% | |
| ! | CCGGTGGTGGCGCATGAGTA+TGG | + | chr1.3:61026072-61026091 | MS.gene20907:CDS | 65.0% |
| ! | GAGCTGCCAGGTGGTTTGGG+CGG | - | chr1.3:61025413-61025432 | None:intergenic | 65.0% |
| ! | GGTGGTTTGGGCGGTGAGGA+TGG | - | chr1.3:61025404-61025423 | None:intergenic | 65.0% |
| ! | TGCCGTTTCGAGGGTCGTCG+TGG | - | chr1.3:61025249-61025268 | None:intergenic | 65.0% |
| ! | TTCGTGCGACGGCGGTTTGG+TGG | - | chr1.3:61025348-61025367 | None:intergenic | 65.0% |
| !! | GGCTGAACGGTGCCGTTTCG+AGG | - | chr1.3:61025259-61025278 | None:intergenic | 65.0% |
| !! | TGCGACGGCGGTTTGGTGGT+GGG | - | chr1.3:61025344-61025363 | None:intergenic | 65.0% |
| TGGGCGGTGAGGATGGAGCG+GGG | - | chr1.3:61025397-61025416 | None:intergenic | 70.0% | |
| ! | GCCAGGTGGTTTGGGCGGTG+AGG | - | chr1.3:61025408-61025427 | None:intergenic | 70.0% |
| !! | GTGCGACGGCGGTTTGGTGG+TGG | - | chr1.3:61025345-61025364 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 61025235 | 61026590 | 61025235 | ID=MS.gene20907 |
| chr1.3 | mRNA | 61025235 | 61026590 | 61025235 | ID=MS.gene20907.t1;Parent=MS.gene20907 |
| chr1.3 | exon | 61025235 | 61026590 | 61025235 | ID=MS.gene20907.t1.exon1;Parent=MS.gene20907.t1 |
| chr1.3 | CDS | 61025235 | 61026590 | 61025235 | ID=cds.MS.gene20907.t1;Parent=MS.gene20907.t1 |
| Gene Sequence |
| Protein sequence |
