Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20906.t1 | XP_003591309.1 | 96.7 | 449 | 15 | 0 | 3 | 451 | 2 | 450 | 2.90E-253 | 884 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20906.t1 | Q9M1R1 | 64.9 | 450 | 148 | 2 | 1 | 449 | 12 | 452 | 3.2e-176 | 619.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20906.t1 | G7IBQ9 | 96.7 | 449 | 15 | 0 | 3 | 451 | 2 | 450 | 2.1e-253 | 884.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050099 | MS.gene20906 | 0.804052 | 2.60E-49 | -1.69E-46 |
| MS.gene052287 | MS.gene20906 | 0.836928 | 7.02E-57 | -1.69E-46 |
| MS.gene056452 | MS.gene20906 | 0.821146 | 4.72E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene20906 | MS.gene072597 | PPI |
| MS.gene20906 | MS.gene22776 | PPI |
| MS.gene20906 | MS.gene072595 | PPI |
| MS.gene050796 | MS.gene20906 | PPI |
| MS.gene20906 | MS.gene072599 | PPI |
| MS.gene20906 | MS.gene050794 | PPI |
| MS.gene20906 | MS.gene23100 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20906.t1 | MTR_1g086070 | 96.659 | 449 | 15 | 0 | 3 | 451 | 2 | 450 | 0.0 | 903 |
| MS.gene20906.t1 | MTR_7g111540 | 60.179 | 447 | 165 | 4 | 10 | 450 | 16 | 455 | 0.0 | 563 |
| MS.gene20906.t1 | MTR_1g484920 | 58.036 | 448 | 176 | 5 | 5 | 448 | 4 | 443 | 0.0 | 526 |
| MS.gene20906.t1 | MTR_1g484920 | 51.794 | 446 | 164 | 5 | 5 | 448 | 4 | 400 | 1.83e-154 | 444 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20906.t1 | AT3G62130 | 64.889 | 450 | 148 | 2 | 1 | 449 | 12 | 452 | 0.0 | 635 |
| MS.gene20906.t1 | AT3G62130 | 64.889 | 450 | 148 | 2 | 1 | 449 | 12 | 452 | 0.0 | 635 |
| MS.gene20906.t1 | AT5G26600 | 60.179 | 447 | 164 | 4 | 10 | 448 | 33 | 473 | 0.0 | 530 |
| MS.gene20906.t1 | AT5G26600 | 60.179 | 447 | 164 | 4 | 10 | 448 | 33 | 473 | 0.0 | 530 |
Find 134 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGGTATGGTTGTGAAAA+TGG | 0.157149 | 1.3:+61032487 | MS.gene20906:CDS |
| ATGTTAGTAATTTGTATAAA+TGG | 0.173706 | 1.3:+61032246 | MS.gene20906:CDS |
| GCTTGTGGTGCCGTCGATTA+TGG | 0.241155 | 1.3:+61032415 | MS.gene20906:CDS |
| TGAGGTTGAATTACCGTTTC+CGG | 0.253269 | 1.3:+61031983 | MS.gene20906:CDS |
| GACTGCAATTATTCAGCTTT+TGG | 0.256976 | 1.3:+61032796 | MS.gene20906:CDS |
| TTCCGGTTAGGGAATTGATT+AGG | 0.279390 | 1.3:+61032126 | MS.gene20906:CDS |
| TGAAGTTCCTGTGTATTATC+AGG | 0.286901 | 1.3:+61032664 | MS.gene20906:CDS |
| AGCGGAGCTGCCAGGTGGTT+TGG | 0.290209 | 1.3:-61031680 | None:intergenic |
| AATGTTGATGTTAAGGAAAT+TGG | 0.294275 | 1.3:+61032212 | MS.gene20906:CDS |
| ACACTGTTGATGATTATAAT+AGG | 0.298624 | 1.3:+61032768 | MS.gene20906:CDS |
| GCGGAGCTGCCAGGTGGTTT+GGG | 0.312446 | 1.3:-61031679 | None:intergenic |
| GTTGATGGTGCTCATGCTTT+AGG | 0.316255 | 1.3:+61032182 | MS.gene20906:CDS |
| TGATTATTCAGTCACTCTTT+AGG | 0.324233 | 1.3:-61032845 | None:intergenic |
| GATAAGGATGGGTTTATAAC+TGG | 0.327185 | 1.3:+61032716 | MS.gene20906:CDS |
| ATCATACTCGCACACATTTC+AGG | 0.329450 | 1.3:-61032554 | None:intergenic |
| TCCGGTTAGGGAATTGATTA+GGG | 0.334111 | 1.3:+61032127 | MS.gene20906:CDS |
| CGACGTCATCGGCATTGATT+AGG | 0.342101 | 1.3:-61031779 | None:intergenic |
| AAATTATAACACTGTCATTT+CGG | 0.342626 | 1.3:-61031890 | None:intergenic |
| AGATTAACGGTGGGAGAGTT+AGG | 0.343995 | 1.3:+61032060 | MS.gene20906:CDS |
| TGGTTTGCCTTCAAAGATTC+GGG | 0.346535 | 1.3:+61032583 | MS.gene20906:CDS |
| AAGTTTGAATGTTGATGTTA+AGG | 0.365457 | 1.3:+61032205 | MS.gene20906:CDS |
| ATTTCCTCGTTGGAATTAAC+CGG | 0.370491 | 1.3:-61032002 | None:intergenic |
| CAAGCGTGGGGTACAAATCT+TGG | 0.376935 | 1.3:+61032524 | MS.gene20906:CDS |
| ATGATGATGCTTCGAGGTTA+AGG | 0.380388 | 1.3:+61032615 | MS.gene20906:CDS |
| TTCAGTTGTTATTCCGGTTA+GGG | 0.382319 | 1.3:+61032115 | MS.gene20906:CDS |
| TTGGTTTGCCTTCAAAGATT+CGG | 0.383079 | 1.3:+61032582 | MS.gene20906:CDS |
| CTTCAGTTGTTATTCCGGTT+AGG | 0.388055 | 1.3:+61032114 | MS.gene20906:CDS |
| GTGCGACGGCGGTTTGGTGG+TGG | 0.388236 | 1.3:-61031608 | None:intergenic |
| CCGGTGGTGGCGCATGAGTA+TGG | 0.390433 | 1.3:+61032338 | MS.gene20906:CDS |
| GTTTGCCTGCTGAGAGTGCT+TGG | 0.391339 | 1.3:+61032366 | MS.gene20906:CDS |
| GGCTGAACGGTGCCGTTTCG+AGG | 0.394109 | 1.3:-61031522 | None:intergenic |
| CTGCTGAGAGTGCTTGGGTT+GGG | 0.396233 | 1.3:+61032372 | MS.gene20906:CDS |
| GTCATTTCGGCAGAACTTAC+CGG | 0.396727 | 1.3:-61031877 | None:intergenic |
| AAGAAGTTCGTGTGAGGAAA+TGG | 0.397728 | 1.3:-61031574 | None:intergenic |
| ACCCTAATCAATTCCCTAAC+CGG | 0.397893 | 1.3:-61032128 | None:intergenic |
| GATGCCTTCAGTTGTTATTC+CGG | 0.407025 | 1.3:+61032109 | MS.gene20906:CDS |
| TTATGTGAGGATTTCTCATC+AGG | 0.407288 | 1.3:+61032739 | MS.gene20906:CDS |
| CGGTTTGAAGGTGGAATTGA+AGG | 0.407550 | 1.3:+61032449 | MS.gene20906:CDS |
| CGAATCAACAACGGCAGCTT+CGG | 0.409299 | 1.3:+61031630 | MS.gene20906:CDS |
| GGTGGTTTGGGCGGTGAGGA+TGG | 0.410822 | 1.3:-61031667 | None:intergenic |
| CGAAATTTCTTCGACGTCAT+CGG | 0.417067 | 1.3:-61031790 | None:intergenic |
| GAAATGGAGTGAGTGAGTTT+TGG | 0.421190 | 1.3:-61031558 | None:intergenic |
| AACGATGGCAGCAGCGGTGG+TGG | 0.434975 | 1.3:-61031826 | None:intergenic |
| CATGGTATGGTTGTGAAAAT+GGG | 0.436733 | 1.3:+61032488 | MS.gene20906:CDS |
| CTCATCACCCGAATCTTTGA+AGG | 0.440821 | 1.3:-61032590 | None:intergenic |
| TTTGCCTGCTGAGAGTGCTT+GGG | 0.445854 | 1.3:+61032367 | MS.gene20906:CDS |
| CCTGCTGAGAGTGCTTGGGT+TGG | 0.453877 | 1.3:+61032371 | MS.gene20906:CDS |
| TGATTCGTGCGACGGCGGTT+TGG | 0.456057 | 1.3:-61031614 | None:intergenic |
| TTTGGGCGGTGAGGATGGAG+CGG | 0.462678 | 1.3:-61031662 | None:intergenic |
| TTGGGCGGTGAGGATGGAGC+GGG | 0.468335 | 1.3:-61031661 | None:intergenic |
| GCCATCGTTCTTCAACAAAT+CGG | 0.471082 | 1.3:+61031840 | MS.gene20906:CDS |
| TGCGACGGCGGTTTGGTGGT+GGG | 0.473641 | 1.3:-61031607 | None:intergenic |
| ATTGAAGGAGGGAAGATTAA+CGG | 0.474227 | 1.3:+61032047 | MS.gene20906:CDS |
| ATTATCGCGGAGTTTAAGAA+AGG | 0.474569 | 1.3:+61032023 | MS.gene20906:CDS |
| ATTGATTAGGGTTTGTAGAG+AGG | 0.478025 | 1.3:+61032139 | MS.gene20906:CDS |
| TGTGCGAGTATGATTATGAT+TGG | 0.478342 | 1.3:+61032563 | MS.gene20906:CDS |
| TATTATCAGGCTTTGAGAAA+TGG | 0.484635 | 1.3:+61032677 | MS.gene20906:CDS |
| GCCGTTGTTGATTCGTGCGA+CGG | 0.484870 | 1.3:-61031622 | None:intergenic |
| AAGCGTGGGGTACAAATCTT+GGG | 0.486188 | 1.3:+61032525 | MS.gene20906:CDS |
| GGTTTGTAGAGAGGAAGAAG+TGG | 0.491671 | 1.3:+61032148 | MS.gene20906:CDS |
| TGGGCGGTGAGGATGGAGCG+GGG | 0.491672 | 1.3:-61031660 | None:intergenic |
| TGTCGGTGGCTCTGTTATTG+AGG | 0.492187 | 1.3:+61031965 | MS.gene20906:CDS |
| GGCTTTGAGAAATGGTGAAA+GGG | 0.495516 | 1.3:+61032685 | MS.gene20906:CDS |
| TTTAAGAAAGGGATTGAAGG+AGG | 0.501661 | 1.3:+61032035 | MS.gene20906:CDS |
| CTCCGCGATAATTTCCTCGT+TGG | 0.502476 | 1.3:-61032012 | None:intergenic |
| ATTGAATGATGTTCATCATC+CGG | 0.504150 | 1.3:+61032319 | MS.gene20906:CDS |
| CGATTATGGAGTTTGTGAAT+CGG | 0.507392 | 1.3:+61032429 | MS.gene20906:CDS |
| TCGTTGGAATTAACCGGAAA+CGG | 0.508709 | 1.3:-61031996 | None:intergenic |
| GAGTTTGTGAATCGGTTTGA+AGG | 0.509546 | 1.3:+61032437 | MS.gene20906:CDS |
| TCCTCACCGCCCAAACCACC+TGG | 0.513224 | 1.3:+61031670 | MS.gene20906:CDS |
| GCTGAACGGTGCCGTTTCGA+GGG | 0.516516 | 1.3:-61031521 | None:intergenic |
| TTGAAGAAAGCGGAGCTGCC+AGG | 0.524309 | 1.3:-61031688 | None:intergenic |
| TACATAAACGCAACCGAAGG+TGG | 0.527019 | 1.3:-61032278 | None:intergenic |
| TTAAGAAAGGGATTGAAGGA+GGG | 0.529552 | 1.3:+61032036 | MS.gene20906:CDS |
| CCATACTCATGCGCCACCAC+CGG | 0.531694 | 1.3:-61032338 | None:intergenic |
| TTCGTGCGACGGCGGTTTGG+TGG | 0.534624 | 1.3:-61031611 | None:intergenic |
| TTTGTGAATCGGTTTGAAGG+TGG | 0.538570 | 1.3:+61032440 | MS.gene20906:CDS |
| TGAAAGGGATGCTAGAGATA+AGG | 0.538653 | 1.3:+61032700 | MS.gene20906:CDS |
| CCAACCCAAGCACTCTCAGC+AGG | 0.539864 | 1.3:-61032371 | None:intergenic |
| AACCACGACGACCCTCGAAA+CGG | 0.539957 | 1.3:+61031510 | MS.gene20906:CDS |
| GGTTATGTTGAAGCAAGCGT+GGG | 0.542634 | 1.3:+61032511 | MS.gene20906:CDS |
| AGGCTTTGAGAAATGGTGAA+AGG | 0.551471 | 1.3:+61032684 | MS.gene20906:CDS |
| GAGTTTAAGAAAGGGATTGA+AGG | 0.553891 | 1.3:+61032032 | MS.gene20906:CDS |
| TTTCTTTGAGTCTGGCTGAA+CGG | 0.554785 | 1.3:-61031535 | None:intergenic |
| AGGGATGCTAGAGATAAGGA+TGG | 0.555067 | 1.3:+61032704 | MS.gene20906:CDS |
| GAGAATCGAGGATTCCGTTA+CGG | 0.559303 | 1.3:-61031740 | None:intergenic |
| TTATCGCGGAGTTTAAGAAA+GGG | 0.562582 | 1.3:+61032024 | MS.gene20906:CDS |
| TTCTTCAACACCCTCCGTAA+CGG | 0.565314 | 1.3:+61031726 | MS.gene20906:CDS |
| AAGAACGATGGCAGCAGCGG+TGG | 0.568006 | 1.3:-61031829 | None:intergenic |
| GGGTTATGTTGAAGCAAGCG+TGG | 0.571041 | 1.3:+61032510 | MS.gene20906:CDS |
| GTGTTGAAGAAGAAGTCGTC+GGG | 0.572806 | 1.3:-61031714 | None:intergenic |
| GGTTTATAACTGGTTATGTG+AGG | 0.576418 | 1.3:+61032726 | MS.gene20906:CDS |
| TGATGTTCATCATCCGGTGG+TGG | 0.581615 | 1.3:+61032325 | MS.gene20906:CDS |
| TATGAAGAGGAACCATGGTA+TGG | 0.587034 | 1.3:+61032475 | MS.gene20906:CDS |
| AGATTATAGTCCTCAGCTTG+TGG | 0.589039 | 1.3:+61032400 | MS.gene20906:CDS |
| GGGATGCTAGAGATAAGGAT+GGG | 0.591264 | 1.3:+61032705 | MS.gene20906:CDS |
| AAGGAGGGAAGATTAACGGT+GGG | 0.591432 | 1.3:+61032051 | MS.gene20906:CDS |
| GGTTTGAAGGTGGAATTGAA+GGG | 0.591604 | 1.3:+61032450 | MS.gene20906:CDS |
| TCAATAACAGAGCCACCGAC+AGG | 0.591984 | 1.3:-61031963 | None:intergenic |
| GCCGATTTGTTGAAGAACGA+TGG | 0.592414 | 1.3:-61031841 | None:intergenic |
| GCCAGGTGGTTTGGGCGGTG+AGG | 0.592834 | 1.3:-61031671 | None:intergenic |
| GAGCTGCCAGGTGGTTTGGG+CGG | 0.593495 | 1.3:-61031676 | None:intergenic |
| GTGGCGCATGAGTATGGTAA+TGG | 0.597378 | 1.3:+61032344 | MS.gene20906:CDS |
| GAAGCTTATGTTATACCTGT+CGG | 0.603444 | 1.3:+61031948 | MS.gene20906:CDS |
| GAAGGAGGGAAGATTAACGG+TGG | 0.604748 | 1.3:+61032050 | MS.gene20906:CDS |
| TTGAAGAACGATGGCAGCAG+CGG | 0.609909 | 1.3:-61031832 | None:intergenic |
| ATGGTATGGTTGTGAAAATG+GGG | 0.613792 | 1.3:+61032489 | MS.gene20906:CDS |
| ATCGACGGCACCACAAGCTG+AGG | 0.616159 | 1.3:-61032410 | None:intergenic |
| CTCAAAGCCTGATAATACAC+AGG | 0.617796 | 1.3:-61032671 | None:intergenic |
| TAACAGCTTGATAAGCACAA+TGG | 0.618335 | 1.3:-61031914 | None:intergenic |
| GTTGTTGATTCGTGCGACGG+CGG | 0.618562 | 1.3:-61031619 | None:intergenic |
| TGAGTGATGATGATGCTTCG+AGG | 0.619097 | 1.3:+61032609 | MS.gene20906:CDS |
| GGTGTTGAAGAAGAAGTCGT+CGG | 0.621265 | 1.3:-61031715 | None:intergenic |
| CTAACCGGAATAACAACTGA+AGG | 0.626000 | 1.3:-61032113 | None:intergenic |
| ATCGAGGATTCCGTTACGGA+GGG | 0.629759 | 1.3:-61031736 | None:intergenic |
| ACTTACCGGAGGAAAATTGA+CGG | 0.631633 | 1.3:-61031863 | None:intergenic |
| TTCACAAACTCCATAATCGA+CGG | 0.638906 | 1.3:-61032425 | None:intergenic |
| GAATTGAAGGGATTATGAAG+AGG | 0.640801 | 1.3:+61032462 | MS.gene20906:CDS |
| TTCGTGAAGAAGTTCGTGTG+AGG | 0.642301 | 1.3:-61031580 | None:intergenic |
| CGTCGGGTTGTTGAAGAAAG+CGG | 0.644114 | 1.3:-61031698 | None:intergenic |
| TGCCGTTTCGAGGGTCGTCG+TGG | 0.649029 | 1.3:-61031512 | None:intergenic |
| GGGATTATGAAGAGGAACCA+TGG | 0.650885 | 1.3:+61032470 | MS.gene20906:CDS |
| CAATACATAAACGCAACCGA+AGG | 0.652956 | 1.3:-61032281 | None:intergenic |
| AATCGAGGATTCCGTTACGG+AGG | 0.662241 | 1.3:-61031737 | None:intergenic |
| TTCCAACGAGGAAATTATCG+CGG | 0.665860 | 1.3:+61032010 | MS.gene20906:CDS |
| GCTTATGTTATACCTGTCGG+TGG | 0.674775 | 1.3:+61031951 | MS.gene20906:CDS |
| GTTATGTTGAAGCAAGCGTG+GGG | 0.691208 | 1.3:+61032512 | MS.gene20906:CDS |
| AAGAAAGCGGAGCTGCCAGG+TGG | 0.699750 | 1.3:-61031685 | None:intergenic |
| ATTTCGGCAGAACTTACCGG+AGG | 0.711142 | 1.3:-61031874 | None:intergenic |
| GAATGATGTTCATCATCCGG+TGG | 0.719802 | 1.3:+61032322 | MS.gene20906:CDS |
| GCCGTCGCACGAATCAACAA+CGG | 0.725169 | 1.3:+61031621 | MS.gene20906:CDS |
| ATACTCGCACACATTTCAGG+CGG | 0.737674 | 1.3:-61032551 | None:intergenic |
| TGGTATGGTTGTGAAAATGG+GGG | 0.742084 | 1.3:+61032490 | MS.gene20906:CDS |
| GTTTCCGGTTAATTCCAACG+AGG | 0.797229 | 1.3:+61031998 | MS.gene20906:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTTAGTAATTTGTATAAA+TGG | + | chr1.3:61032246-61032265 | MS.gene20906:CDS | 15.0% |
| !!! | AAATTATAACACTGTCATTT+CGG | - | chr1.3:61031893-61031912 | None:intergenic | 20.0% |
| ! | AAGTTTGAATGTTGATGTTA+AGG | + | chr1.3:61032205-61032224 | MS.gene20906:CDS | 25.0% |
| ! | AATGTTGATGTTAAGGAAAT+TGG | + | chr1.3:61032212-61032231 | MS.gene20906:CDS | 25.0% |
| !!! | ACACTGTTGATGATTATAAT+AGG | + | chr1.3:61032768-61032787 | MS.gene20906:CDS | 25.0% |
| ATTGAATGATGTTCATCATC+CGG | + | chr1.3:61032319-61032338 | MS.gene20906:CDS | 30.0% | |
| !! | ATTATTCAGCTTTTGGAAGA+TGG | + | chr1.3:61032803-61032822 | MS.gene20906:CDS | 30.0% |
| !! | GAGGTTAAGGTTTTATCTTA+GGG | + | chr1.3:61032628-61032647 | MS.gene20906:CDS | 30.0% |
| !! | TATTATCAGGCTTTGAGAAA+TGG | + | chr1.3:61032677-61032696 | MS.gene20906:CDS | 30.0% |
| ATGGTATGGTTGTGAAAATG+GGG | + | chr1.3:61032489-61032508 | MS.gene20906:CDS | 35.0% | |
| ATTATCGCGGAGTTTAAGAA+AGG | + | chr1.3:61032023-61032042 | MS.gene20906:CDS | 35.0% | |
| ATTGAAGGAGGGAAGATTAA+CGG | + | chr1.3:61032047-61032066 | MS.gene20906:CDS | 35.0% | |
| ATTGATTAGGGTTTGTAGAG+AGG | + | chr1.3:61032139-61032158 | MS.gene20906:CDS | 35.0% | |
| ATTTCCTCGTTGGAATTAAC+CGG | - | chr1.3:61032005-61032024 | None:intergenic | 35.0% | |
| CATGGTATGGTTGTGAAAAT+GGG | + | chr1.3:61032488-61032507 | MS.gene20906:CDS | 35.0% | |
| CGATTATGGAGTTTGTGAAT+CGG | + | chr1.3:61032429-61032448 | MS.gene20906:CDS | 35.0% | |
| GAAGCTTATGTTATACCTGT+CGG | + | chr1.3:61031948-61031967 | MS.gene20906:CDS | 35.0% | |
| GAATTGAAGGGATTATGAAG+AGG | + | chr1.3:61032462-61032481 | MS.gene20906:CDS | 35.0% | |
| GAGTTTAAGAAAGGGATTGA+AGG | + | chr1.3:61032032-61032051 | MS.gene20906:CDS | 35.0% | |
| GGTTTATAACTGGTTATGTG+AGG | + | chr1.3:61032726-61032745 | MS.gene20906:CDS | 35.0% | |
| TAACAGCTTGATAAGCACAA+TGG | - | chr1.3:61031917-61031936 | None:intergenic | 35.0% | |
| TGAAGTTCCTGTGTATTATC+AGG | + | chr1.3:61032664-61032683 | MS.gene20906:CDS | 35.0% | |
| TGTGCGAGTATGATTATGAT+TGG | + | chr1.3:61032563-61032582 | MS.gene20906:CDS | 35.0% | |
| TTAAGAAAGGGATTGAAGGA+GGG | + | chr1.3:61032036-61032055 | MS.gene20906:CDS | 35.0% | |
| TTATCGCGGAGTTTAAGAAA+GGG | + | chr1.3:61032024-61032043 | MS.gene20906:CDS | 35.0% | |
| TTATGTGAGGATTTCTCATC+AGG | + | chr1.3:61032739-61032758 | MS.gene20906:CDS | 35.0% | |
| TTCACAAACTCCATAATCGA+CGG | - | chr1.3:61032428-61032447 | None:intergenic | 35.0% | |
| TTTAAGAAAGGGATTGAAGG+AGG | + | chr1.3:61032035-61032054 | MS.gene20906:CDS | 35.0% | |
| ! | GACTGCAATTATTCAGCTTT+TGG | + | chr1.3:61032796-61032815 | MS.gene20906:CDS | 35.0% |
| ! | GATAAGGATGGGTTTATAAC+TGG | + | chr1.3:61032716-61032735 | MS.gene20906:CDS | 35.0% |
| ! | GTGGATCAGATTTTTGTTGA+TGG | + | chr1.3:61032167-61032186 | MS.gene20906:CDS | 35.0% |
| ! | TTCAGTTGTTATTCCGGTTA+GGG | + | chr1.3:61032115-61032134 | MS.gene20906:CDS | 35.0% |
| !! | CGAGGTTAAGGTTTTATCTT+AGG | + | chr1.3:61032627-61032646 | MS.gene20906:CDS | 35.0% |
| !! | TTGGTTTGCCTTCAAAGATT+CGG | + | chr1.3:61032582-61032601 | MS.gene20906:CDS | 35.0% |
| !!! | AGTTTTGGTTTCTTTGAGTC+TGG | - | chr1.3:61031546-61031565 | None:intergenic | 35.0% |
| AAGAAGTTCGTGTGAGGAAA+TGG | - | chr1.3:61031577-61031596 | None:intergenic | 40.0% | |
| ACCCTAATCAATTCCCTAAC+CGG | - | chr1.3:61032131-61032150 | None:intergenic | 40.0% | |
| ACTTACCGGAGGAAAATTGA+CGG | - | chr1.3:61031866-61031885 | None:intergenic | 40.0% | |
| AGATTATAGTCCTCAGCTTG+TGG | + | chr1.3:61032400-61032419 | MS.gene20906:CDS | 40.0% | |
| ATCATACTCGCACACATTTC+AGG | - | chr1.3:61032557-61032576 | None:intergenic | 40.0% | |
| CAATACATAAACGCAACCGA+AGG | - | chr1.3:61032284-61032303 | None:intergenic | 40.0% | |
| CCATGGTATGGTTGTGAAAA+TGG | + | chr1.3:61032487-61032506 | MS.gene20906:CDS | 40.0% | |
| CGAAATTTCTTCGACGTCAT+CGG | - | chr1.3:61031793-61031812 | None:intergenic | 40.0% | |
| CTAACCGGAATAACAACTGA+AGG | - | chr1.3:61032116-61032135 | None:intergenic | 40.0% | |
| CTCAAAGCCTGATAATACAC+AGG | - | chr1.3:61032674-61032693 | None:intergenic | 40.0% | |
| GCCATCGTTCTTCAACAAAT+CGG | + | chr1.3:61031840-61031859 | MS.gene20906:CDS | 40.0% | |
| GGTTTGAAGGTGGAATTGAA+GGG | + | chr1.3:61032450-61032469 | MS.gene20906:CDS | 40.0% | |
| TATGAAGAGGAACCATGGTA+TGG | + | chr1.3:61032475-61032494 | MS.gene20906:CDS | 40.0% | |
| TCCGGTTAGGGAATTGATTA+GGG | + | chr1.3:61032127-61032146 | MS.gene20906:CDS | 40.0% | |
| TCGTTGGAATTAACCGGAAA+CGG | - | chr1.3:61031999-61032018 | None:intergenic | 40.0% | |
| TGAAAGGGATGCTAGAGATA+AGG | + | chr1.3:61032700-61032719 | MS.gene20906:CDS | 40.0% | |
| TGAGGTTGAATTACCGTTTC+CGG | + | chr1.3:61031983-61032002 | MS.gene20906:CDS | 40.0% | |
| TGGTATGGTTGTGAAAATGG+GGG | + | chr1.3:61032490-61032509 | MS.gene20906:CDS | 40.0% | |
| TTCCAACGAGGAAATTATCG+CGG | + | chr1.3:61032010-61032029 | MS.gene20906:CDS | 40.0% | |
| TTCCGGTTAGGGAATTGATT+AGG | + | chr1.3:61032126-61032145 | MS.gene20906:CDS | 40.0% | |
| TTTCTTTGAGTCTGGCTGAA+CGG | - | chr1.3:61031538-61031557 | None:intergenic | 40.0% | |
| ! | ATGATGATGCTTCGAGGTTA+AGG | + | chr1.3:61032615-61032634 | MS.gene20906:CDS | 40.0% |
| ! | CCATTTTCACAACCATACCA+TGG | - | chr1.3:61032490-61032509 | None:intergenic | 40.0% |
| ! | CTTCAGTTGTTATTCCGGTT+AGG | + | chr1.3:61032114-61032133 | MS.gene20906:CDS | 40.0% |
| ! | GAAATGGAGTGAGTGAGTTT+TGG | - | chr1.3:61031561-61031580 | None:intergenic | 40.0% |
| ! | GATGCCTTCAGTTGTTATTC+CGG | + | chr1.3:61032109-61032128 | MS.gene20906:CDS | 40.0% |
| ! | TGATGATTTTGCGAGAATCG+AGG | - | chr1.3:61031755-61031774 | None:intergenic | 40.0% |
| ! | TGGTTTGCCTTCAAAGATTC+GGG | + | chr1.3:61032583-61032602 | MS.gene20906:CDS | 40.0% |
| !! | AGGCTTTGAGAAATGGTGAA+AGG | + | chr1.3:61032684-61032703 | MS.gene20906:CDS | 40.0% |
| !! | GAGTTTGTGAATCGGTTTGA+AGG | + | chr1.3:61032437-61032456 | MS.gene20906:CDS | 40.0% |
| !! | GGCTTTGAGAAATGGTGAAA+GGG | + | chr1.3:61032685-61032704 | MS.gene20906:CDS | 40.0% |
| !! | TTTGTGAATCGGTTTGAAGG+TGG | + | chr1.3:61032440-61032459 | MS.gene20906:CDS | 40.0% |
| !!! | ATGGTTTTTTTCGCCACCTT+CGG | + | chr1.3:61032265-61032284 | MS.gene20906:CDS | 40.0% |
| AAGCGTGGGGTACAAATCTT+GGG | + | chr1.3:61032525-61032544 | MS.gene20906:CDS | 45.0% | |
| AAGGAGGGAAGATTAACGGT+GGG | + | chr1.3:61032051-61032070 | MS.gene20906:CDS | 45.0% | |
| AGATTAACGGTGGGAGAGTT+AGG | + | chr1.3:61032060-61032079 | MS.gene20906:CDS | 45.0% | |
| AGGGATGCTAGAGATAAGGA+TGG | + | chr1.3:61032704-61032723 | MS.gene20906:CDS | 45.0% | |
| ATACTCGCACACATTTCAGG+CGG | - | chr1.3:61032554-61032573 | None:intergenic | 45.0% | |
| CGGTTTGAAGGTGGAATTGA+AGG | + | chr1.3:61032449-61032468 | MS.gene20906:CDS | 45.0% | |
| CTCATCACCCGAATCTTTGA+AGG | - | chr1.3:61032593-61032612 | None:intergenic | 45.0% | |
| GAATGATGTTCATCATCCGG+TGG | + | chr1.3:61032322-61032341 | MS.gene20906:CDS | 45.0% | |
| GAGAATCGAGGATTCCGTTA+CGG | - | chr1.3:61031743-61031762 | None:intergenic | 45.0% | |
| GCTTATGTTATACCTGTCGG+TGG | + | chr1.3:61031951-61031970 | MS.gene20906:CDS | 45.0% | |
| GGGATGCTAGAGATAAGGAT+GGG | + | chr1.3:61032705-61032724 | MS.gene20906:CDS | 45.0% | |
| GGGATTATGAAGAGGAACCA+TGG | + | chr1.3:61032470-61032489 | MS.gene20906:CDS | 45.0% | |
| GGTTATGTTGAAGCAAGCGT+GGG | + | chr1.3:61032511-61032530 | MS.gene20906:CDS | 45.0% | |
| GGTTTGTAGAGAGGAAGAAG+TGG | + | chr1.3:61032148-61032167 | MS.gene20906:CDS | 45.0% | |
| GTCATTTCGGCAGAACTTAC+CGG | - | chr1.3:61031880-61031899 | None:intergenic | 45.0% | |
| GTGTTGAAGAAGAAGTCGTC+GGG | - | chr1.3:61031717-61031736 | None:intergenic | 45.0% | |
| GTTATGTTGAAGCAAGCGTG+GGG | + | chr1.3:61032512-61032531 | MS.gene20906:CDS | 45.0% | |
| GTTTCCGGTTAATTCCAACG+AGG | + | chr1.3:61031998-61032017 | MS.gene20906:CDS | 45.0% | |
| TACATAAACGCAACCGAAGG+TGG | - | chr1.3:61032281-61032300 | None:intergenic | 45.0% | |
| TTCGTGAAGAAGTTCGTGTG+AGG | - | chr1.3:61031583-61031602 | None:intergenic | 45.0% | |
| TTCTTCAACACCCTCCGTAA+CGG | + | chr1.3:61031726-61031745 | MS.gene20906:CDS | 45.0% | |
| ! | GGTGTTGAAGAAGAAGTCGT+CGG | - | chr1.3:61031718-61031737 | None:intergenic | 45.0% |
| ! | TGAGTGATGATGATGCTTCG+AGG | + | chr1.3:61032609-61032628 | MS.gene20906:CDS | 45.0% |
| !! | GCCGATTTGTTGAAGAACGA+TGG | - | chr1.3:61031844-61031863 | None:intergenic | 45.0% |
| !! | GTTGATGGTGCTCATGCTTT+AGG | + | chr1.3:61032182-61032201 | MS.gene20906:CDS | 45.0% |
| AATCGAGGATTCCGTTACGG+AGG | - | chr1.3:61031740-61031759 | None:intergenic | 50.0% | |
| ATCGAGGATTCCGTTACGGA+GGG | - | chr1.3:61031739-61031758 | None:intergenic | 50.0% | |
| ATTTCGGCAGAACTTACCGG+AGG | - | chr1.3:61031877-61031896 | None:intergenic | 50.0% | |
| CAAGCGTGGGGTACAAATCT+TGG | + | chr1.3:61032524-61032543 | MS.gene20906:CDS | 50.0% | |
| CGAATCAACAACGGCAGCTT+CGG | + | chr1.3:61031630-61031649 | MS.gene20906:CDS | 50.0% | |
| CTCCGCGATAATTTCCTCGT+TGG | - | chr1.3:61032015-61032034 | None:intergenic | 50.0% | |
| GAAGGAGGGAAGATTAACGG+TGG | + | chr1.3:61032050-61032069 | MS.gene20906:CDS | 50.0% | |
| GGGTTATGTTGAAGCAAGCG+TGG | + | chr1.3:61032510-61032529 | MS.gene20906:CDS | 50.0% | |
| GTGGCGCATGAGTATGGTAA+TGG | + | chr1.3:61032344-61032363 | MS.gene20906:CDS | 50.0% | |
| TCAATAACAGAGCCACCGAC+AGG | - | chr1.3:61031966-61031985 | None:intergenic | 50.0% | |
| TGATGTTCATCATCCGGTGG+TGG | + | chr1.3:61032325-61032344 | MS.gene20906:CDS | 50.0% | |
| TTGAAGAACGATGGCAGCAG+CGG | - | chr1.3:61031835-61031854 | None:intergenic | 50.0% | |
| ! | ATCGGCCGTCAATTTTCCTC+CGG | + | chr1.3:61031858-61031877 | MS.gene20906:CDS | 50.0% |
| ! | CGTCGGGTTGTTGAAGAAAG+CGG | - | chr1.3:61031701-61031720 | None:intergenic | 50.0% |
| ! | TGTCGGTGGCTCTGTTATTG+AGG | + | chr1.3:61031965-61031984 | MS.gene20906:CDS | 50.0% |
| !! | CGACGTCATCGGCATTGATT+AGG | - | chr1.3:61031782-61031801 | None:intergenic | 50.0% |
| !! | TTTGCCTGCTGAGAGTGCTT+GGG | + | chr1.3:61032367-61032386 | MS.gene20906:CDS | 50.0% |
| AACCACGACGACCCTCGAAA+CGG | + | chr1.3:61031510-61031529 | MS.gene20906:CDS | 55.0% | |
| GCCGTCGCACGAATCAACAA+CGG | + | chr1.3:61031621-61031640 | MS.gene20906:CDS | 55.0% | |
| TTGAAGAAAGCGGAGCTGCC+AGG | - | chr1.3:61031691-61031710 | None:intergenic | 55.0% | |
| !! | CTGCTGAGAGTGCTTGGGTT+GGG | + | chr1.3:61032372-61032391 | MS.gene20906:CDS | 55.0% |
| !! | GCCGTTGTTGATTCGTGCGA+CGG | - | chr1.3:61031625-61031644 | None:intergenic | 55.0% |
| !! | GCTTGTGGTGCCGTCGATTA+TGG | + | chr1.3:61032415-61032434 | MS.gene20906:CDS | 55.0% |
| !! | GTTGTTGATTCGTGCGACGG+CGG | - | chr1.3:61031622-61031641 | None:intergenic | 55.0% |
| !! | GTTTGCCTGCTGAGAGTGCT+TGG | + | chr1.3:61032366-61032385 | MS.gene20906:CDS | 55.0% |
| AAGAAAGCGGAGCTGCCAGG+TGG | - | chr1.3:61031688-61031707 | None:intergenic | 60.0% | |
| AAGAACGATGGCAGCAGCGG+TGG | - | chr1.3:61031832-61031851 | None:intergenic | 60.0% | |
| ATCGACGGCACCACAAGCTG+AGG | - | chr1.3:61032413-61032432 | None:intergenic | 60.0% | |
| CCAACCCAAGCACTCTCAGC+AGG | - | chr1.3:61032374-61032393 | None:intergenic | 60.0% | |
| CCATACTCATGCGCCACCAC+CGG | - | chr1.3:61032341-61032360 | None:intergenic | 60.0% | |
| TGATTCGTGCGACGGCGGTT+TGG | - | chr1.3:61031617-61031636 | None:intergenic | 60.0% | |
| TTTGGGCGGTGAGGATGGAG+CGG | - | chr1.3:61031665-61031684 | None:intergenic | 60.0% | |
| !! | CCTGCTGAGAGTGCTTGGGT+TGG | + | chr1.3:61032371-61032390 | MS.gene20906:CDS | 60.0% |
| !! | GCTGAACGGTGCCGTTTCGA+GGG | - | chr1.3:61031524-61031543 | None:intergenic | 60.0% |
| AACGATGGCAGCAGCGGTGG+TGG | - | chr1.3:61031829-61031848 | None:intergenic | 65.0% | |
| AGCGGAGCTGCCAGGTGGTT+TGG | - | chr1.3:61031683-61031702 | None:intergenic | 65.0% | |
| GCGGAGCTGCCAGGTGGTTT+GGG | - | chr1.3:61031682-61031701 | None:intergenic | 65.0% | |
| TCCTCACCGCCCAAACCACC+TGG | + | chr1.3:61031670-61031689 | MS.gene20906:CDS | 65.0% | |
| TTGGGCGGTGAGGATGGAGC+GGG | - | chr1.3:61031664-61031683 | None:intergenic | 65.0% | |
| ! | CCGGTGGTGGCGCATGAGTA+TGG | + | chr1.3:61032338-61032357 | MS.gene20906:CDS | 65.0% |
| ! | GAGCTGCCAGGTGGTTTGGG+CGG | - | chr1.3:61031679-61031698 | None:intergenic | 65.0% |
| ! | GGTGGTTTGGGCGGTGAGGA+TGG | - | chr1.3:61031670-61031689 | None:intergenic | 65.0% |
| ! | TGCCGTTTCGAGGGTCGTCG+TGG | - | chr1.3:61031515-61031534 | None:intergenic | 65.0% |
| ! | TTCGTGCGACGGCGGTTTGG+TGG | - | chr1.3:61031614-61031633 | None:intergenic | 65.0% |
| !! | GGCTGAACGGTGCCGTTTCG+AGG | - | chr1.3:61031525-61031544 | None:intergenic | 65.0% |
| !! | TGCGACGGCGGTTTGGTGGT+GGG | - | chr1.3:61031610-61031629 | None:intergenic | 65.0% |
| TGGGCGGTGAGGATGGAGCG+GGG | - | chr1.3:61031663-61031682 | None:intergenic | 70.0% | |
| ! | GCCAGGTGGTTTGGGCGGTG+AGG | - | chr1.3:61031674-61031693 | None:intergenic | 70.0% |
| !! | GTGCGACGGCGGTTTGGTGG+TGG | - | chr1.3:61031611-61031630 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 61031501 | 61032856 | 61031501 | ID=MS.gene20906 |
| chr1.3 | mRNA | 61031501 | 61032856 | 61031501 | ID=MS.gene20906.t1;Parent=MS.gene20906 |
| chr1.3 | exon | 61031501 | 61032856 | 61031501 | ID=MS.gene20906.t1.exon1;Parent=MS.gene20906.t1 |
| chr1.3 | CDS | 61031501 | 61032856 | 61031501 | ID=cds.MS.gene20906.t1;Parent=MS.gene20906.t1 |
| Gene Sequence |
| Protein sequence |
