AlfalfaGEDB | MS.gene20906

M. sativa cultivar XinJiangDaYe / MS.gene20906

KEGG: K22207
GO: GO:0003674 GO:0003824
PFAM: PF00266.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20906.t1	XP_003591309.1	96.7	449	15	0	3	451	2	450	2.90E-253	884

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20906.t1	Q9M1R1	64.9	450	148	2	1	449	12	452	3.2e-176	619.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20906.t1	G7IBQ9	96.7	449	15	0	3	451	2	450	2.1e-253	884.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050099	MS.gene20906	0.804052	2.60E-49	-1.69E-46
MS.gene052287	MS.gene20906	0.836928	7.02E-57	-1.69E-46
MS.gene056452	MS.gene20906	0.821146	4.72E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene050796	MS.gene20906	PPI
MS.gene20906	MS.gene072597	PPI
MS.gene20906	MS.gene22776	PPI
MS.gene20906	MS.gene072595	PPI
MS.gene20906	MS.gene072599	PPI
MS.gene20906	MS.gene050794	PPI
MS.gene20906	MS.gene23100	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20906.t1	MTR_1g086070	96.659	449	15	0	3	451	2	450	0.0	903
MS.gene20906.t1	MTR_7g111540	60.179	447	165	4	10	450	16	455	0.0	563
MS.gene20906.t1	MTR_1g484920	58.036	448	176	5	5	448	4	443	0.0	526
MS.gene20906.t1	MTR_1g484920	51.794	446	164	5	5	448	4	400	1.83e-154	444

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene20906.t1	AT3G62130	64.889	450	148	2	1	449	12	452	635
MS.gene20906.t1	AT3G62130	64.889	450	148	2	1	449	12	452	635
MS.gene20906.t1	AT5G26600	60.179	447	164	4	10	448	33	473	530
MS.gene20906.t1	AT5G26600	60.179	447	164	4	10	448	33	473	530

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Find 134 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTATAACACTGTCATTT+CGG	0.342626	1.3:-61031890	None:intergenic
AACCACGACGACCCTCGAAA+CGG	0.539957	1.3:+61031510	MS.gene20906:CDS
AACGATGGCAGCAGCGGTGG+TGG	0.434975	1.3:-61031826	None:intergenic
AAGAAAGCGGAGCTGCCAGG+TGG	0.699750	1.3:-61031685	None:intergenic
AAGAACGATGGCAGCAGCGG+TGG	0.568006	1.3:-61031829	None:intergenic
AAGAAGTTCGTGTGAGGAAA+TGG	0.397728	1.3:-61031574	None:intergenic
AAGCGTGGGGTACAAATCTT+GGG	0.486188	1.3:+61032525	MS.gene20906:CDS
AAGGAGGGAAGATTAACGGT+GGG	0.591432	1.3:+61032051	MS.gene20906:CDS
AAGTTTGAATGTTGATGTTA+AGG	0.365457	1.3:+61032205	MS.gene20906:CDS
AATCGAGGATTCCGTTACGG+AGG	0.662241	1.3:-61031737	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGAATGATGTTCATCATC+CGG	+	chr1.3:61032319-61032338	MS.gene20906:CDS	30.0%
ATGGTATGGTTGTGAAAATG+GGG	+	chr1.3:61032489-61032508	MS.gene20906:CDS	35.0%
ATTATCGCGGAGTTTAAGAA+AGG	+	chr1.3:61032023-61032042	MS.gene20906:CDS	35.0%
ATTGAAGGAGGGAAGATTAA+CGG	+	chr1.3:61032047-61032066	MS.gene20906:CDS	35.0%
ATTGATTAGGGTTTGTAGAG+AGG	+	chr1.3:61032139-61032158	MS.gene20906:CDS	35.0%
ATTTCCTCGTTGGAATTAAC+CGG	-	chr1.3:61032005-61032024	None:intergenic	35.0%
CATGGTATGGTTGTGAAAAT+GGG	+	chr1.3:61032488-61032507	MS.gene20906:CDS	35.0%
CGATTATGGAGTTTGTGAAT+CGG	+	chr1.3:61032429-61032448	MS.gene20906:CDS	35.0%
GAAGCTTATGTTATACCTGT+CGG	+	chr1.3:61031948-61031967	MS.gene20906:CDS	35.0%
GAATTGAAGGGATTATGAAG+AGG	+	chr1.3:61032462-61032481	MS.gene20906:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	61031501	61032856	61031501	ID=MS.gene20906
chr1.3	mRNA	61031501	61032856	61031501	ID=MS.gene20906.t1;Parent=MS.gene20906
chr1.3	exon	61031501	61032856	61031501	ID=MS.gene20906.t1.exon1;Parent=MS.gene20906.t1
chr1.3	CDS	61031501	61032856	61031501	ID=cds.MS.gene20906.t1;Parent=MS.gene20906.t1

Gene Sequence

>MS.gene20906

ATGGATGATAACCACGACGACCCTCGAAACGGCACCGTTCAGCCAGACTCAAAGAAACCAAAACTCACTCACTCCATTTCCTCACACGAACTTCTTCACGAATTCTCCCACCACCAAACCGCCGTCGCACGAATCAACAACGGCAGCTTCGGCAGCTGTCCCCGCTCCATCCTCACCGCCCAAACCACCTGGCAGCTCCGCTTTCTTCAACAACCCGACGACTTCTTCTTCAACACCCTCCGTAACGGAATCCTCGATTCTCGCAAAATCATCAAGAACCTAATCAATGCCGATGACGTCGAAGAAATTTCGTTAATCGATAATGCCACCACCGCTGCTGCCATCGTTCTTCAACAAATCGGCCGTCAATTTTCCTCCGGTAAGTTCTGCCGAAATGACAGTGTTATAATTTTCCATTGTGCTTATCAAGCTGTTAAGAAATCAATTGAAGCTTATGTTATACCTGTCGGTGGCTCTGTTATTGAGGTTGAATTACCGTTTCCGGTTAATTCCAACGAGGAAATTATCGCGGAGTTTAAGAAAGGGATTGAAGGAGGGAAGATTAACGGTGGGAGAGTTAGGTTAGCGATAATTGATCACATTACGTCGATGCCTTCAGTTGTTATTCCGGTTAGGGAATTGATTAGGGTTTGTAGAGAGGAAGAAGTGGATCAGATTTTTGTTGATGGTGCTCATGCTTTAGGAAGTTTGAATGTTGATGTTAAGGAAATTGGTGCTGATTTTTATGTTAGTAATTTGTATAAATGGTTTTTTTCGCCACCTTCGGTTGCGTTTATGTATTGTAATAAGAATAAGAAATTGAATGATGTTCATCATCCGGTGGTGGCGCATGAGTATGGTAATGGTTTGCCTGCTGAGAGTGCTTGGGTTGGGATGAGAGATTATAGTCCTCAGCTTGTGGTGCCGTCGATTATGGAGTTTGTGAATCGGTTTGAAGGTGGAATTGAAGGGATTATGAAGAGGAACCATGGTATGGTTGTGAAAATGGGGGTTATGTTGAAGCAAGCGTGGGGTACAAATCTTGGGTCGCCGCCTGAAATGTGTGCGAGTATGATTATGATTGGTTTGCCTTCAAAGATTCGGGTGATGAGTGATGATGATGCTTCGAGGTTAAGGTTTTATCTTAGGGTTTATCATGCTATTGAAGTTCCTGTGTATTATCAGGCTTTGAGAAATGGTGAAAGGGATGCTAGAGATAAGGATGGGTTTATAACTGGTTATGTGAGGATTTCTCATCAGGTGTATAACACTGTTGATGATTATAATAGGCTTAAGACTGCAATTATTCAGCTTTTGGAAGATGGAAAAATTTGCAGTGAACTTCCTAAAGAGTGA

Protein sequence

>MS.gene20906.t1

MDDNHDDPRNGTVQPDSKKPKLTHSISSHELLHEFSHHQTAVARINNGSFGSCPRSILTAQTTWQLRFLQQPDDFFFNTLRNGILDSRKIIKNLINADDVEEISLIDNATTAAAIVLQQIGRQFSSGKFCRNDSVIIFHCAYQAVKKSIEAYVIPVGGSVIEVELPFPVNSNEEIIAEFKKGIEGGKINGGRVRLAIIDHITSMPSVVIPVRELIRVCREEEVDQIFVDGAHALGSLNVDVKEIGADFYVSNLYKWFFSPPSVAFMYCNKNKKLNDVHHPVVAHEYGNGLPAESAWVGMRDYSPQLVVPSIMEFVNRFEGGIEGIMKRNHGMVVKMGVMLKQAWGTNLGSPPEMCASMIMIGLPSKIRVMSDDDASRLRFYLRVYHAIEVPVYYQALRNGERDARDKDGFITGYVRISHQVYNTVDDYNRLKTAIIQLLEDGKICSELPKE