Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051569.t1 | ACJ83839.1 | 96 | 252 | 6 | 2 | 1 | 252 | 1 | 248 | 2.10E-83 | 318.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051569.t1 | B7FGG0 | 96.0 | 252 | 6 | 2 | 1 | 252 | 1 | 248 | 1.5e-83 | 318.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049678 | MS.gene051569 | 0.831205 | 1.90E-55 | -1.69E-46 |
MS.gene05031 | MS.gene051569 | 0.843961 | 1.02E-58 | -1.69E-46 |
MS.gene050463 | MS.gene051569 | 0.837386 | 5.36E-57 | -1.69E-46 |
MS.gene050528 | MS.gene051569 | 0.8392 | 1.83E-57 | -1.69E-46 |
MS.gene051569 | MS.gene061582 | 0.851204 | 1.03E-60 | -1.69E-46 |
MS.gene051569 | MS.gene33033 | 0.994962 | 9.36E-212 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051569.t1 | MTR_1g015650 | 95.510 | 245 | 3 | 3 | 10 | 252 | 57 | 295 | 2.71e-165 | 459 |
MS.gene051569.t1 | MTR_3g105210 | 55.758 | 165 | 58 | 4 | 10 | 173 | 2 | 152 | 8.70e-54 | 172 |
MS.gene051569.t1 | MTR_4g125330 | 41.916 | 167 | 78 | 7 | 75 | 231 | 66 | 223 | 3.81e-23 | 94.7 |
MS.gene051569.t1 | MTR_1g045430 | 41.860 | 86 | 44 | 3 | 50 | 135 | 48 | 127 | 5.49e-14 | 68.6 |
MS.gene051569.t1 | MTR_1g009640 | 43.023 | 86 | 44 | 2 | 50 | 135 | 52 | 132 | 7.14e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051569.t1 | AT5G21940 | 54.015 | 137 | 50 | 6 | 44 | 174 | 44 | 173 | 8.76e-33 | 120 |
MS.gene051569.t1 | AT3G43850 | 49.606 | 127 | 38 | 5 | 44 | 170 | 30 | 130 | 5.31e-27 | 103 |
MS.gene051569.t1 | AT3G43850 | 50.000 | 142 | 43 | 6 | 31 | 170 | 15 | 130 | 1.51e-26 | 104 |
Find 44 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATAAGGAATGTTTACCTAAT+AGG | 0.264814 | 1.3:-6491263 | None:intergenic |
TAGAAGAGGTTCTTCCTATT+AGG | 0.287448 | 1.3:+6491249 | MS.gene051569:CDS |
GCCACTTCCACCGCGTCATC+CGG | 0.302841 | 1.3:+6492637 | MS.gene051569:CDS |
CTTCTTGTGTATGCATTCTC+TGG | 0.380516 | 1.3:-6492404 | None:intergenic |
AATTTGCTGGCTTTCAATCA+TGG | 0.423862 | 1.3:+6492434 | MS.gene051569:CDS |
AAGAAGACGTAGAAATTTGC+TGG | 0.426140 | 1.3:+6492421 | MS.gene051569:CDS |
GCTGGCTTTCAATCATGGTT+GGG | 0.432602 | 1.3:+6492439 | MS.gene051569:CDS |
AGTATCTCAAACTTCTATAG+TGG | 0.435354 | 1.3:+6492314 | MS.gene051569:CDS |
AAAGAAGACACTCTATTTCC+CGG | 0.439102 | 1.3:-6492656 | None:intergenic |
CGCGGTGGAAGTGGCGAAGA+AGG | 0.445270 | 1.3:-6492629 | None:intergenic |
GAAGCTGAGAGTAAATATAA+TGG | 0.445348 | 1.3:+6491200 | MS.gene051569:CDS |
TGCTGGCTTTCAATCATGGT+TGG | 0.445425 | 1.3:+6492438 | MS.gene051569:CDS |
TTCCCTTTGAGAAGCAATAG+TGG | 0.449201 | 1.3:+6492476 | MS.gene051569:CDS |
CCCGGATGACGCGGTGGAAG+TGG | 0.453467 | 1.3:-6492638 | None:intergenic |
AGCTAGGCTTGTGAAGGACT+TGG | 0.454561 | 1.3:-6492342 | None:intergenic |
CACCACTATTGCTTCTCAAA+GGG | 0.472099 | 1.3:-6492478 | None:intergenic |
CTGTGTTATTTGACGCGCCG+AGG | 0.485567 | 1.3:+6491048 | MS.gene051569:CDS |
CCACCACTATTGCTTCTCAA+AGG | 0.509782 | 1.3:-6492479 | None:intergenic |
TGTGTTATTTGACGCGCCGA+GGG | 0.520967 | 1.3:+6491049 | MS.gene051569:CDS |
CCACTTCCACCGCGTCATCC+GGG | 0.531769 | 1.3:+6492638 | MS.gene051569:CDS |
GACGACGACGATGATGATCA+AGG | 0.535849 | 1.3:+6491077 | MS.gene051569:CDS |
AGAAGGTGCTGAAGAATATG+AGG | 0.542161 | 1.3:-6492612 | None:intergenic |
GAGAGATCAATGGATGAGAA+TGG | 0.545446 | 1.3:+6491170 | MS.gene051569:CDS |
GAAAAGAAATTCCTCTGCAA+AGG | 0.546535 | 1.3:-6492686 | None:intergenic |
TGGTGGTGCTTTAGATTGCA+TGG | 0.548478 | 1.3:+6491220 | MS.gene051569:CDS |
GATGATTATGGAGCTTGAAA+CGG | 0.556496 | 1.3:+6490995 | None:intergenic |
AACGGTGGCGATTAAGCGCG+TGG | 0.559763 | 1.3:+6491013 | MS.gene051569:CDS |
CTTTAGCATCTCCTTTGCAG+AGG | 0.570257 | 1.3:+6492675 | MS.gene051569:CDS |
TCGTCGTCGTCATGATCCCT+CGG | 0.586543 | 1.3:-6491065 | None:intergenic |
GGTTTCATCAGAGAGATCAA+TGG | 0.590893 | 1.3:+6491160 | MS.gene051569:CDS |
CCTTTGAGAAGCAATAGTGG+TGG | 0.600401 | 1.3:+6492479 | MS.gene051569:CDS |
TTGCATGGAAGCTTTAGAAG+AGG | 0.606872 | 1.3:+6491235 | MS.gene051569:CDS |
CTATTTCCCGGATGACGCGG+TGG | 0.613883 | 1.3:-6492644 | None:intergenic |
ACAATGATGCAGATCAGCCA+AGG | 0.617708 | 1.3:-6492708 | None:intergenic |
AACATCAGCTAGGCTTGTGA+AGG | 0.619105 | 1.3:-6492348 | None:intergenic |
ACGACGTCGTCTTCATCGAT+CGG | 0.620053 | 1.3:+6491113 | MS.gene051569:CDS |
ACGACGACGATGATGATCAA+GGG | 0.626067 | 1.3:+6491078 | MS.gene051569:CDS |
GTGTTGTGACAACATCAGCT+AGG | 0.640480 | 1.3:-6492358 | None:intergenic |
CGACGATGATGATCAAGGGA+AGG | 0.650149 | 1.3:+6491082 | MS.gene051569:CDS |
AAATAGTGATGATGATGATG+AGG | 0.659114 | 1.3:+6491139 | MS.gene051569:CDS |
ACTCTATTTCCCGGATGACG+CGG | 0.665825 | 1.3:-6492647 | None:intergenic |
GCTGAGAGTAAATATAATGG+TGG | 0.695812 | 1.3:+6491203 | MS.gene051569:CDS |
GATTATGGAGCTTGAAACGG+TGG | 0.699571 | 1.3:+6490998 | None:intergenic |
ACGGTGGCGATTAAGCGCGT+GGG | 0.700701 | 1.3:+6491014 | MS.gene051569:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAATATATATATATATAA+TGG | - | chr1.3:6491300-6491319 | None:intergenic | 0.0% |
!! | ATTTATATCAAAATTTACTA+TGG | + | chr1.3:6492186-6492205 | MS.gene051569:intron | 10.0% |
!!! | AAAGATTGTATATTTTTTTT+TGG | + | chr1.3:6491512-6491531 | MS.gene051569:intron | 10.0% |
!!! | AAGATTGTATATTTTTTTTT+GGG | + | chr1.3:6491513-6491532 | MS.gene051569:intron | 10.0% |
!!! | AATATTGCCTTTTTTATTTT+TGG | + | chr1.3:6491979-6491998 | MS.gene051569:intron | 15.0% |
!!! | AATTTTGCTAAAAATAGTAA+GGG | + | chr1.3:6491786-6491805 | MS.gene051569:intron | 15.0% |
!!! | TTTTTTAAATGTTTTAAGCA+GGG | + | chr1.3:6491477-6491496 | MS.gene051569:intron | 15.0% |
!!! | TTTTTTTAAATGTTTTAAGC+AGG | + | chr1.3:6491476-6491495 | MS.gene051569:intron | 15.0% |
!! | AAAAGTTTGTGAATGAAATT+TGG | + | chr1.3:6491636-6491655 | MS.gene051569:intron | 20.0% |
!! | GGCATTAGTTAAATTAATTA+GGG | + | chr1.3:6491584-6491603 | MS.gene051569:intron | 20.0% |
!! | TAATGGAAAAACTGTTAATA+AGG | - | chr1.3:6491283-6491302 | None:intergenic | 20.0% |
!! | TGATATAAATCTACACAATT+TGG | - | chr1.3:6492176-6492195 | None:intergenic | 20.0% |
!!! | ATTAGTGTTCTAAATAATGA+AGG | + | chr1.3:6492260-6492279 | MS.gene051569:intron | 20.0% |
!!! | GAATTTTGCTAAAAATAGTA+AGG | + | chr1.3:6491785-6491804 | MS.gene051569:intron | 20.0% |
!!! | TCATTTTCAATTGAAGAATT+TGG | - | chr1.3:6492758-6492777 | None:intergenic | 20.0% |
! | AACAAAACATTCAAAAGTGA+AGG | - | chr1.3:6491362-6491381 | None:intergenic | 25.0% |
! | ATAAGGAATGTTTACCTAAT+AGG | - | chr1.3:6491266-6491285 | None:intergenic | 25.0% |
! | ATCCAATTCAAAAGTTTATC+CGG | - | chr1.3:6491944-6491963 | None:intergenic | 25.0% |
! | GGGCATTAGTTAAATTAATT+AGG | + | chr1.3:6491583-6491602 | MS.gene051569:intron | 25.0% |
! | TCCTCAACCAAAAATAAAAA+AGG | - | chr1.3:6491989-6492008 | None:intergenic | 25.0% |
! | TGTTTCAGTTTCACAAAATT+AGG | + | chr1.3:6491744-6491763 | MS.gene051569:intron | 25.0% |
!! | AATTGTTGGATCAATTTTTG+TGG | + | chr1.3:6491561-6491580 | MS.gene051569:intron | 25.0% |
!! | AATTTGGTGATTGTATTGTA+AGG | + | chr1.3:6491652-6491671 | MS.gene051569:intron | 25.0% |
!! | ATTAATTAGGGTACTATTGT+TGG | + | chr1.3:6491596-6491615 | MS.gene051569:intron | 25.0% |
!! | ATTGTTGGATCAATTTTTGT+GGG | + | chr1.3:6491562-6491581 | MS.gene051569:intron | 25.0% |
!! | ATTTTGTGAAACTGAAACAA+AGG | - | chr1.3:6491743-6491762 | None:intergenic | 25.0% |
!! | CTTTTGATAGAAGAAAACTT+GGG | + | chr1.3:6491885-6491904 | MS.gene051569:intron | 25.0% |
!! | GGTATTAGTTAAATTAGCTT+GGG | + | chr1.3:6491534-6491553 | MS.gene051569:intron | 25.0% |
!! | TTTACAATGTCTTTTACAGA+TGG | - | chr1.3:6492383-6492402 | None:intergenic | 25.0% |
!! | TTTTGTGAAACTGAAACAAA+GGG | - | chr1.3:6491742-6491761 | None:intergenic | 25.0% |
!!! | ATTTTTAGCAAAATTCCACA+TGG | - | chr1.3:6491781-6491800 | None:intergenic | 25.0% |
AGTATCTCAAACTTCTATAG+TGG | + | chr1.3:6492314-6492333 | MS.gene051569:CDS | 30.0% | |
CTAAAGAACATGTTTGCAAT+TGG | + | chr1.3:6491914-6491933 | MS.gene051569:intron | 30.0% | |
GAAGCTGAGAGTAAATATAA+TGG | + | chr1.3:6491200-6491219 | MS.gene051569:CDS | 30.0% | |
GGGTATTAGTTAAATTAGCT+TGG | + | chr1.3:6491533-6491552 | MS.gene051569:intron | 30.0% | |
GTTTGAATCAACTTTCATTC+TGG | - | chr1.3:6492147-6492166 | None:intergenic | 30.0% | |
GTTTGGTACTTGTTTGTAAA+TGG | + | chr1.3:6492034-6492053 | MS.gene051569:intron | 30.0% | |
TTACAAACAAGTACCAAACA+AGG | - | chr1.3:6492033-6492052 | None:intergenic | 30.0% | |
! | AAATAGTGATGATGATGATG+AGG | + | chr1.3:6491139-6491158 | MS.gene051569:CDS | 30.0% |
! | AAGGCTAATCCAATCTTTTA+TGG | + | chr1.3:6492279-6492298 | MS.gene051569:intron | 30.0% |
! | GCTTTTGATAGAAGAAAACT+TGG | + | chr1.3:6491884-6491903 | MS.gene051569:intron | 30.0% |
! | TAATTCATGTTTGCCTTGTT+TGG | + | chr1.3:6492017-6492036 | MS.gene051569:intron | 30.0% |
! | TACCGGATAAACTTTTGAAT+TGG | + | chr1.3:6491939-6491958 | MS.gene051569:intron | 30.0% |
! | TTGTTGGATCAATTTTTGTG+GGG | + | chr1.3:6491563-6491582 | MS.gene051569:intron | 30.0% |
!!! | GCCTTTTTTATTTTTGGTTG+AGG | + | chr1.3:6491985-6492004 | MS.gene051569:intron | 30.0% |
!!! | TAGGTTTATTTTGTACCATG+TGG | + | chr1.3:6491763-6491782 | MS.gene051569:intron | 30.0% |
AAAGAAGACACTCTATTTCC+CGG | - | chr1.3:6492659-6492678 | None:intergenic | 35.0% | |
AAGAAGACGTAGAAATTTGC+TGG | + | chr1.3:6492421-6492440 | MS.gene051569:CDS | 35.0% | |
CAACGTGATTGTATAGTTTC+GGG | + | chr1.3:6492083-6492102 | MS.gene051569:intron | 35.0% | |
CCAAAACATGACGAATTCAT+TGG | - | chr1.3:6491838-6491857 | None:intergenic | 35.0% | |
CCTGCATAACCATAAAAGAT+TGG | - | chr1.3:6492291-6492310 | None:intergenic | 35.0% | |
GAAAAGAAATTCCTCTGCAA+AGG | - | chr1.3:6492689-6492708 | None:intergenic | 35.0% | |
GCAACGTGATTGTATAGTTT+CGG | + | chr1.3:6492082-6492101 | MS.gene051569:intron | 35.0% | |
GCATGATTGAAGCTTACAAA+AGG | - | chr1.3:6491866-6491885 | None:intergenic | 35.0% | |
GCTGAGAGTAAATATAATGG+TGG | + | chr1.3:6491203-6491222 | MS.gene051569:CDS | 35.0% | |
TAGAAGAGGTTCTTCCTATT+AGG | + | chr1.3:6491249-6491268 | MS.gene051569:CDS | 35.0% | |
! | CATTTTCATTGTTGCAGCAA+TGG | - | chr1.3:6492735-6492754 | None:intergenic | 35.0% |
! | CCAATCTTTTATGGTTATGC+AGG | + | chr1.3:6492288-6492307 | MS.gene051569:intron | 35.0% |
! | CCAATGAATTCGTCATGTTT+TGG | + | chr1.3:6491835-6491854 | MS.gene051569:intron | 35.0% |
! | TGTGTGATGATGTGATCTAT+AGG | + | chr1.3:6491696-6491715 | MS.gene051569:intron | 35.0% |
! | TTAGCTTGGGTACTAATTGT+TGG | + | chr1.3:6491547-6491566 | MS.gene051569:intron | 35.0% |
!! | AATTTGCTGGCTTTCAATCA+TGG | + | chr1.3:6492434-6492453 | MS.gene051569:CDS | 35.0% |
ATCACATCATCACACACTAC+TGG | - | chr1.3:6491692-6491711 | None:intergenic | 40.0% | |
CACCACTATTGCTTCTCAAA+GGG | - | chr1.3:6492481-6492500 | None:intergenic | 40.0% | |
CATGTTTGCAATTGGTGTAC+CGG | + | chr1.3:6491922-6491941 | MS.gene051569:intron | 40.0% | |
CTGTGAGTTTGACGATATCA+CGG | + | chr1.3:6492057-6492076 | MS.gene051569:intron | 40.0% | |
CTTCTTGTGTATGCATTCTC+TGG | - | chr1.3:6492407-6492426 | None:intergenic | 40.0% | |
GAGAGATCAATGGATGAGAA+TGG | + | chr1.3:6491170-6491189 | MS.gene051569:CDS | 40.0% | |
GGTTTCATCAGAGAGATCAA+TGG | + | chr1.3:6491160-6491179 | MS.gene051569:CDS | 40.0% | |
! | GCAGAGGAATTTCTTTTCCT+TGG | + | chr1.3:6492691-6492710 | MS.gene051569:CDS | 40.0% |
! | TTCCCTTTGAGAAGCAATAG+TGG | + | chr1.3:6492476-6492495 | MS.gene051569:CDS | 40.0% |
!! | AGAAGGTGCTGAAGAATATG+AGG | - | chr1.3:6492615-6492634 | None:intergenic | 40.0% |
!! | TTGCATGGAAGCTTTAGAAG+AGG | + | chr1.3:6491235-6491254 | MS.gene051569:CDS | 40.0% |
AACATCAGCTAGGCTTGTGA+AGG | - | chr1.3:6492351-6492370 | None:intergenic | 45.0% | |
ACAATGATGCAGATCAGCCA+AGG | - | chr1.3:6492711-6492730 | None:intergenic | 45.0% | |
ACGACGACGATGATGATCAA+GGG | + | chr1.3:6491078-6491097 | MS.gene051569:CDS | 45.0% | |
CCACCACTATTGCTTCTCAA+AGG | - | chr1.3:6492482-6492501 | None:intergenic | 45.0% | |
CTTTAGCATCTCCTTTGCAG+AGG | + | chr1.3:6492675-6492694 | MS.gene051569:CDS | 45.0% | |
GTGTTGTGACAACATCAGCT+AGG | - | chr1.3:6492361-6492380 | None:intergenic | 45.0% | |
TGAGTTTGACGATATCACGG+TGG | + | chr1.3:6492060-6492079 | MS.gene051569:intron | 45.0% | |
! | CCTTTGAGAAGCAATAGTGG+TGG | + | chr1.3:6492479-6492498 | MS.gene051569:CDS | 45.0% |
! | TGGTGGTGCTTTAGATTGCA+TGG | + | chr1.3:6491220-6491239 | MS.gene051569:CDS | 45.0% |
!! | GCTGGCTTTCAATCATGGTT+GGG | + | chr1.3:6492439-6492458 | MS.gene051569:CDS | 45.0% |
!! | TGCTGGCTTTCAATCATGGT+TGG | + | chr1.3:6492438-6492457 | MS.gene051569:CDS | 45.0% |
ACGACGTCGTCTTCATCGAT+CGG | + | chr1.3:6491113-6491132 | MS.gene051569:CDS | 50.0% | |
ACTCTATTTCCCGGATGACG+CGG | - | chr1.3:6492650-6492669 | None:intergenic | 50.0% | |
AGCTAGGCTTGTGAAGGACT+TGG | - | chr1.3:6492345-6492364 | None:intergenic | 50.0% | |
CGACGATGATGATCAAGGGA+AGG | + | chr1.3:6491082-6491101 | MS.gene051569:CDS | 50.0% | |
GACGACGACGATGATGATCA+AGG | + | chr1.3:6491077-6491096 | MS.gene051569:CDS | 50.0% | |
!! | TGTGTTATTTGACGCGCCGA+GGG | + | chr1.3:6491049-6491068 | MS.gene051569:CDS | 50.0% |
TCGTCGTCGTCATGATCCCT+CGG | - | chr1.3:6491068-6491087 | None:intergenic | 55.0% | |
!! | CTGTGTTATTTGACGCGCCG+AGG | + | chr1.3:6491048-6491067 | MS.gene051569:CDS | 55.0% |
AACGGTGGCGATTAAGCGCG+TGG | + | chr1.3:6491013-6491032 | MS.gene051569:CDS | 60.0% | |
ACGGTGGCGATTAAGCGCGT+GGG | + | chr1.3:6491014-6491033 | MS.gene051569:CDS | 60.0% | |
CTATTTCCCGGATGACGCGG+TGG | - | chr1.3:6492647-6492666 | None:intergenic | 60.0% | |
CCACTTCCACCGCGTCATCC+GGG | + | chr1.3:6492638-6492657 | MS.gene051569:CDS | 65.0% | |
CGCGGTGGAAGTGGCGAAGA+AGG | - | chr1.3:6492632-6492651 | None:intergenic | 65.0% | |
GCCACTTCCACCGCGTCATC+CGG | + | chr1.3:6492637-6492656 | MS.gene051569:CDS | 65.0% | |
CCCGGATGACGCGGTGGAAG+TGG | - | chr1.3:6492641-6492660 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 6491002 | 6492799 | 6491002 | ID=MS.gene051569 |
chr1.3 | mRNA | 6491002 | 6492799 | 6491002 | ID=MS.gene051569.t1;Parent=MS.gene051569 |
chr1.3 | exon | 6491002 | 6491270 | 6491002 | ID=MS.gene051569.t1.exon1;Parent=MS.gene051569.t1 |
chr1.3 | CDS | 6491002 | 6491270 | 6491002 | ID=cds.MS.gene051569.t1;Parent=MS.gene051569.t1 |
chr1.3 | exon | 6492310 | 6492799 | 6492310 | ID=MS.gene051569.t1.exon2;Parent=MS.gene051569.t1 |
chr1.3 | CDS | 6492310 | 6492799 | 6492310 | ID=cds.MS.gene051569.t1;Parent=MS.gene051569.t1 |
Gene Sequence |
Protein sequence |