Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31139.t1 | XP_003597357.1 | 95.8 | 384 | 15 | 1 | 1 | 384 | 1 | 383 | 9.80E-202 | 712.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31139.t1 | Q0WQX7 | 62.9 | 345 | 125 | 2 | 38 | 382 | 47 | 388 | 4.4e-126 | 452.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31139.t1 | G7IHP5 | 95.8 | 384 | 15 | 1 | 1 | 384 | 1 | 383 | 7.1e-202 | 712.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049850 | MS.gene31139 | 0.80714 | 5.85E-50 | -1.69E-46 |
| MS.gene051021 | MS.gene31139 | 0.802457 | 5.56E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene31139 | 0.81995 | 8.87E-53 | -1.69E-46 |
| MS.gene051664 | MS.gene31139 | 0.805704 | 1.17E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene31139 | 0.833072 | 6.58E-56 | -1.69E-46 |
| MS.gene051720 | MS.gene31139 | 0.868589 | 5.84E-66 | -1.69E-46 |
| MS.gene052102 | MS.gene31139 | 0.898721 | 4.02E-77 | -1.69E-46 |
| MS.gene052104 | MS.gene31139 | 0.9015 | 2.52E-78 | -1.69E-46 |
| MS.gene052665 | MS.gene31139 | 0.80157 | 8.46E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene31139 | 0.827812 | 1.27E-54 | -1.69E-46 |
| MS.gene053122 | MS.gene31139 | 0.802796 | 4.73E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene31139 | 0.844442 | 7.54E-59 | -1.69E-46 |
| MS.gene053171 | MS.gene31139 | 0.845561 | 3.76E-59 | -1.69E-46 |
| MS.gene053226 | MS.gene31139 | 0.82241 | 2.40E-53 | -1.69E-46 |
| MS.gene053581 | MS.gene31139 | 0.829078 | 6.30E-55 | -1.69E-46 |
| MS.gene053599 | MS.gene31139 | 0.814268 | 1.68E-51 | -1.69E-46 |
| MS.gene054584 | MS.gene31139 | 0.851518 | 8.42E-61 | -1.69E-46 |
| MS.gene055465 | MS.gene31139 | 0.825887 | 3.67E-54 | -1.69E-46 |
| MS.gene055466 | MS.gene31139 | 0.823392 | 1.42E-53 | -1.69E-46 |
| MS.gene055468 | MS.gene31139 | 0.824661 | 7.15E-54 | -1.69E-46 |
| MS.gene055469 | MS.gene31139 | 0.801513 | 8.69E-49 | -1.69E-46 |
| MS.gene055537 | MS.gene31139 | 0.815473 | 9.08E-52 | -1.69E-46 |
| MS.gene056308 | MS.gene31139 | 0.811801 | 5.84E-51 | -1.69E-46 |
| MS.gene058649 | MS.gene31139 | 0.806423 | 8.29E-50 | -1.69E-46 |
| MS.gene058852 | MS.gene31139 | 0.810211 | 1.29E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene31139 | 0.807566 | 4.75E-50 | -1.69E-46 |
| MS.gene060519 | MS.gene31139 | 0.817359 | 3.44E-52 | -1.69E-46 |
| MS.gene060587 | MS.gene31139 | 0.835109 | 2.03E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31139.t1 | MTR_2g097210 | 96.875 | 384 | 11 | 1 | 1 | 384 | 1 | 383 | 0.0 | 763 |
| MS.gene31139.t1 | MTR_2g097210 | 96.346 | 301 | 10 | 1 | 1 | 301 | 1 | 300 | 0.0 | 588 |
| MS.gene31139.t1 | MTR_4g021755 | 64.706 | 306 | 105 | 2 | 37 | 342 | 34 | 336 | 2.79e-150 | 430 |
| MS.gene31139.t1 | MTR_7g498280 | 59.412 | 340 | 122 | 3 | 1 | 338 | 1 | 326 | 2.72e-127 | 369 |
| MS.gene31139.t1 | MTR_7g061780 | 61.311 | 305 | 112 | 3 | 23 | 326 | 4 | 303 | 6.09e-125 | 363 |
| MS.gene31139.t1 | MTR_1g101310 | 53.191 | 329 | 135 | 3 | 16 | 339 | 5 | 319 | 3.29e-113 | 333 |
| MS.gene31139.t1 | MTR_2g103600 | 55.636 | 275 | 114 | 3 | 44 | 312 | 30 | 302 | 6.97e-99 | 296 |
| MS.gene31139.t1 | MTR_3g073530 | 39.257 | 377 | 216 | 5 | 13 | 382 | 9 | 379 | 2.99e-87 | 269 |
| MS.gene31139.t1 | MTR_2g088290 | 36.462 | 277 | 116 | 7 | 65 | 340 | 1 | 218 | 3.54e-42 | 147 |
| MS.gene31139.t1 | MTR_2g088315 | 49.398 | 83 | 42 | 0 | 108 | 190 | 1 | 83 | 1.77e-20 | 85.5 |
| MS.gene31139.t1 | MTR_8g106030 | 37.931 | 145 | 73 | 3 | 177 | 320 | 99 | 227 | 1.46e-18 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31139.t1 | AT2G29050 | 62.434 | 378 | 139 | 2 | 6 | 383 | 15 | 389 | 1.20e-175 | 494 |
| MS.gene31139.t1 | AT3G53780 | 61.318 | 349 | 127 | 2 | 35 | 383 | 54 | 394 | 1.06e-153 | 439 |
| MS.gene31139.t1 | AT1G63120 | 63.946 | 294 | 98 | 2 | 44 | 335 | 30 | 317 | 1.05e-128 | 372 |
| MS.gene31139.t1 | AT2G29050 | 58.104 | 327 | 106 | 3 | 6 | 304 | 15 | 338 | 4.73e-126 | 367 |
| MS.gene31139.t1 | AT5G07250 | 60.061 | 328 | 116 | 3 | 21 | 337 | 22 | 345 | 5.50e-125 | 364 |
| MS.gene31139.t1 | AT3G53780 | 61.957 | 276 | 99 | 1 | 108 | 383 | 1 | 270 | 3.44e-124 | 359 |
| MS.gene31139.t1 | AT1G12750 | 56.066 | 305 | 129 | 2 | 33 | 335 | 6 | 307 | 6.02e-122 | 355 |
| MS.gene31139.t1 | AT1G12750 | 56.066 | 305 | 129 | 2 | 33 | 335 | 6 | 307 | 6.02e-122 | 355 |
| MS.gene31139.t1 | AT1G12750 | 56.066 | 305 | 129 | 2 | 33 | 335 | 6 | 307 | 6.02e-122 | 355 |
| MS.gene31139.t1 | AT1G12750 | 56.066 | 305 | 129 | 2 | 33 | 335 | 6 | 307 | 6.02e-122 | 355 |
| MS.gene31139.t1 | AT1G12750 | 56.066 | 305 | 129 | 2 | 33 | 335 | 6 | 307 | 6.02e-122 | 355 |
| MS.gene31139.t1 | AT3G53780 | 62.547 | 267 | 92 | 2 | 35 | 301 | 54 | 312 | 2.25e-114 | 336 |
| MS.gene31139.t1 | AT1G52580 | 54.209 | 297 | 127 | 6 | 20 | 311 | 4 | 296 | 4.24e-97 | 292 |
| MS.gene31139.t1 | AT1G77860 | 44.083 | 338 | 184 | 4 | 48 | 382 | 49 | 384 | 1.08e-96 | 293 |
| MS.gene31139.t1 | AT4G23070 | 55.326 | 291 | 125 | 2 | 44 | 334 | 28 | 313 | 1.46e-93 | 283 |
| MS.gene31139.t1 | AT5G07250 | 49.695 | 328 | 103 | 4 | 21 | 337 | 22 | 298 | 1.50e-88 | 270 |
| MS.gene31139.t1 | AT1G77860 | 45.151 | 299 | 159 | 4 | 48 | 343 | 49 | 345 | 1.24e-84 | 261 |
| MS.gene31139.t1 | AT1G12750 | 60.326 | 184 | 71 | 1 | 33 | 214 | 6 | 189 | 2.35e-76 | 235 |
| MS.gene31139.t1 | AT1G12750 | 59.893 | 187 | 73 | 1 | 33 | 217 | 6 | 192 | 4.31e-76 | 234 |
Find 88 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCGGCTTGAACAAGAATT+TGG | 0.175005 | 2.4:+6430221 | MS.gene31139:CDS |
| TGATTCGTCCTCAGTTTAAA+TGG | 0.238851 | 2.4:+6430866 | MS.gene31139:CDS |
| CTCTATGTGATATCTGGTTT+TGG | 0.246364 | 2.4:+6430469 | MS.gene31139:CDS |
| GGATTTCTCTATGTGATATC+TGG | 0.262897 | 2.4:+6430463 | MS.gene31139:CDS |
| TCTCAGAGCTCTTCATTAAT+TGG | 0.278075 | 2.4:+6430578 | MS.gene31139:CDS |
| TCTTTCCTATTACTCATTGC+AGG | 0.286895 | 2.4:+6430979 | MS.gene31139:CDS |
| CTTACCCTGCAATGAGTAAT+AGG | 0.292148 | 2.4:-6430984 | None:intergenic |
| TTCGCTCATCTAGGAGGATT+TGG | 0.297054 | 2.4:+6430814 | MS.gene31139:CDS |
| GGCGCCTTGTCTCTTGTATA+TGG | 0.304879 | 2.4:+6430141 | MS.gene31139:CDS |
| CTTGAACAAGAATTTGGATT+TGG | 0.310501 | 2.4:+6430227 | MS.gene31139:CDS |
| CATCTAGGAGGATTTGGTTC+TGG | 0.319719 | 2.4:+6430820 | MS.gene31139:CDS |
| TCACTCGTGATCGTGATTTC+AGG | 0.355861 | 2.4:+6429001 | MS.gene31139:CDS |
| CTTAAAGAAAACCCTCTCTT+TGG | 0.366436 | 2.4:+6429177 | MS.gene31139:CDS |
| TGGCACCACCGTTGAGGTTA+AGG | 0.367443 | 2.4:+6428930 | MS.gene31139:CDS |
| GGCATCTCAGTTGGTGCATC+TGG | 0.372637 | 2.4:+6430526 | MS.gene31139:CDS |
| TTTGGTTCTGGCTTTCTGCT+TGG | 0.373387 | 2.4:+6430832 | MS.gene31139:CDS |
| CTTGTATATGGTTGCATGGT+GGG | 0.379600 | 2.4:+6430153 | MS.gene31139:CDS |
| TGTCCTTTCGCAGTTAGAAT+TGG | 0.379685 | 2.4:+6430442 | MS.gene31139:intron |
| TTGGACGATATATGCCAATA+AGG | 0.382911 | 2.4:+6430597 | MS.gene31139:CDS |
| GGTGCATCTGGTGCATTGTT+TGG | 0.382955 | 2.4:+6430538 | MS.gene31139:CDS |
| AGCCAACAACAGTCTAAATC+TGG | 0.385356 | 2.4:+6430892 | MS.gene31139:CDS |
| ACCTTATCAATATGTGTTGT+GGG | 0.394616 | 2.4:+6430951 | MS.gene31139:CDS |
| ATCCAGATTTAGACTGTTGT+TGG | 0.400472 | 2.4:-6430894 | None:intergenic |
| GTTGTGTTCCTACCTCAAAA+TGG | 0.409054 | 2.4:+6431231 | MS.gene31139:CDS |
| TCTATGCAGACAACGGAATT+CGG | 0.409614 | 2.4:+6431411 | MS.gene31139:intron |
| GTTGTAATAAATTTAGCTGT+TGG | 0.441288 | 2.4:+6430769 | MS.gene31139:CDS |
| GTCTGCGTTATTCATACAAA+CGG | 0.445629 | 2.4:+6430504 | MS.gene31139:CDS |
| TGTCCTGAGAATGCATTTCA+TGG | 0.455723 | 2.4:+6429111 | MS.gene31139:CDS |
| TACCTTATCAATATGTGTTG+TGG | 0.455869 | 2.4:+6430950 | MS.gene31139:CDS |
| GGTGCATTGTTTGGCTTACT+CGG | 0.462230 | 2.4:+6430547 | MS.gene31139:CDS |
| TTTCAGGCTCTTTAAGCAAT+GGG | 0.470163 | 2.4:+6429017 | MS.gene31139:CDS |
| GTTGACAATTTCGCTCATCT+AGG | 0.472592 | 2.4:+6430805 | MS.gene31139:CDS |
| GTCTCTTGTATATGGTTGCA+TGG | 0.482616 | 2.4:+6430149 | MS.gene31139:CDS |
| AAGGAGAATCTTCCAAGAAA+AGG | 0.495328 | 2.4:-6429147 | None:intergenic |
| TCTTTAAGCAATGGGTTCCA+TGG | 0.504864 | 2.4:+6429025 | MS.gene31139:CDS |
| ACCCACAACACATATTGATA+AGG | 0.507027 | 2.4:-6430952 | None:intergenic |
| TACCTCAAAATGGAGTTGTC+AGG | 0.507679 | 2.4:+6431241 | MS.gene31139:CDS |
| GGGATGGTTCTACTCTTTCG+AGG | 0.511587 | 2.4:+6431167 | MS.gene31139:CDS |
| ATTTCAGGCTCTTTAAGCAA+TGG | 0.516293 | 2.4:+6429016 | MS.gene31139:CDS |
| CATTGTTTGGCTTACTCGGA+GGG | 0.524954 | 2.4:+6430551 | MS.gene31139:CDS |
| ACGTTGGCAAACACAAAAGT+TGG | 0.526318 | 2.4:-6429054 | None:intergenic |
| CTTTGTTCGCAACTTTGCCA+TGG | 0.528366 | 2.4:+6431519 | MS.gene31139:CDS |
| CTTTCCTATTACTCATTGCA+GGG | 0.535119 | 2.4:+6430980 | MS.gene31139:CDS |
| GTACCATGAAATGCATTCTC+AGG | 0.536653 | 2.4:-6429114 | None:intergenic |
| TCAACATGTTGGCAAGTACA+TGG | 0.537008 | 2.4:-6430181 | None:intergenic |
| AAATCACGATCACGAGTGAC+GGG | 0.541550 | 2.4:-6428997 | None:intergenic |
| TGACAGATTCATTACTGGGA+TGG | 0.543513 | 2.4:+6431151 | MS.gene31139:intron |
| TAAACTGAGGACGAATCAAA+AGG | 0.544513 | 2.4:-6430861 | None:intergenic |
| TGCTCTAGAAGTAGATAAAG+TGG | 0.545530 | 2.4:+6430100 | MS.gene31139:CDS |
| AAAACTCACGTAAAGGAAGA+AGG | 0.547703 | 2.4:-6429201 | None:intergenic |
| GACAATTTCGCTCATCTAGG+AGG | 0.549429 | 2.4:+6430808 | MS.gene31139:CDS |
| TCTGCGTTATTCATACAAAC+GGG | 0.553724 | 2.4:+6430505 | MS.gene31139:CDS |
| ACAAAAGTTGGAACAAGCCA+TGG | 0.556908 | 2.4:-6429042 | None:intergenic |
| ATACAAACGGGCATCTCAGT+TGG | 0.569101 | 2.4:+6430517 | MS.gene31139:CDS |
| GAAATCACGATCACGAGTGA+CGG | 0.572889 | 2.4:-6428998 | None:intergenic |
| ACGACGAAGACGGAGACCCA+CGG | 0.573842 | 2.4:-6428963 | None:intergenic |
| TCAACGGTGGTGCCACCATG+TGG | 0.575383 | 2.4:-6428922 | None:intergenic |
| CATGTGTATCTATCTATCCA+TGG | 0.577916 | 2.4:-6431536 | None:intergenic |
| AAATCATAATCATGAGTGGA+GGG | 0.582372 | 2.4:+6428893 | None:intergenic |
| TTGTATATGGTTGCATGGTG+GGG | 0.585338 | 2.4:+6430154 | MS.gene31139:CDS |
| AGGAAGAAGGACCAAAGAGA+GGG | 0.589526 | 2.4:-6429188 | None:intergenic |
| TGGTTCATGAACACGAAGGT+TGG | 0.597343 | 2.4:+6430120 | MS.gene31139:CDS |
| AACAATGAAAATAATAACGT+TGG | 0.597447 | 2.4:-6429070 | None:intergenic |
| GGAACAAAGCATTTATTGTG+AGG | 0.597670 | 2.4:+6431262 | MS.gene31139:CDS |
| TTAAGGTTCATCCTCGCCGT+GGG | 0.597978 | 2.4:+6428947 | MS.gene31139:CDS |
| TCTTGTATATGGTTGCATGG+TGG | 0.604832 | 2.4:+6430152 | MS.gene31139:CDS |
| GCATTGTTTGGCTTACTCGG+AGG | 0.606501 | 2.4:+6430550 | MS.gene31139:CDS |
| GTTAAGGTTCATCCTCGCCG+TGG | 0.606777 | 2.4:+6428946 | MS.gene31139:CDS |
| CGAAATTGTCAACATGTGGA+AGG | 0.611940 | 2.4:-6430795 | None:intergenic |
| TGAGCGAAATTGTCAACATG+TGG | 0.615330 | 2.4:-6430799 | None:intergenic |
| GGATTCGACGACGACGAAGA+CGG | 0.615599 | 2.4:-6428973 | None:intergenic |
| CAACGGTGGTGCCACCATGT+GGG | 0.618108 | 2.4:-6428921 | None:intergenic |
| AACATCACATGCATGAGCAA+TGG | 0.619993 | 2.4:+6431444 | MS.gene31139:CDS |
| ACATGGTGGCACCACCGTTG+AGG | 0.621441 | 2.4:+6428924 | MS.gene31139:CDS |
| AAGGAAGAAGGACCAAAGAG+AGG | 0.633246 | 2.4:-6429189 | None:intergenic |
| TGGCTTATCCATTTAAACTG+AGG | 0.633333 | 2.4:-6430874 | None:intergenic |
| AAAATCATAATCATGAGTGG+AGG | 0.633390 | 2.4:+6428892 | None:intergenic |
| TCACGATCACGAGTGACGGG+AGG | 0.634822 | 2.4:-6428994 | None:intergenic |
| ACTTGAATGAACGTTGCTCG+TGG | 0.663668 | 2.4:+6431195 | MS.gene31139:CDS |
| AGGATGAACCTTAACCTCAA+CGG | 0.671763 | 2.4:-6428938 | None:intergenic |
| TCATAATCATGAGTGGAGGG+AGG | 0.674267 | 2.4:+6428896 | None:intergenic |
| GAAGACGGAGACCCACGGCG+AGG | 0.680052 | 2.4:-6428958 | None:intergenic |
| GAAGAGCTAGTATTCGACAG+AGG | 0.682346 | 2.4:-6431483 | None:intergenic |
| AGTGGAGGGAGGAACCCACA+TGG | 0.690830 | 2.4:+6428907 | MS.gene31139:CDS |
| GCAACCATATACAAGAGACA+AGG | 0.709780 | 2.4:-6430145 | None:intergenic |
| ATGAACCTTAACCTCAACGG+TGG | 0.726735 | 2.4:-6428935 | None:intergenic |
| GGAGGGAGGAACCCACATGG+TGG | 0.736064 | 2.4:+6428910 | MS.gene31139:CDS |
| AAAGTGGTTCATGAACACGA+AGG | 0.793505 | 2.4:+6430116 | MS.gene31139:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGACAATAAATTATTTATC+AGG | - | chr2.4:6430661-6430680 | None:intergenic | 15.0% |
| !! | AATGATATAAATACAGATAA+TGG | - | chr2.4:6430320-6430339 | None:intergenic | 15.0% |
| !! | ATATTACCTTTAATATTCTT+AGG | + | chr2.4:6431035-6431054 | MS.gene31139:intron | 15.0% |
| !! | TAAATAATTTATTGTCTTTG+CGG | + | chr2.4:6430663-6430682 | MS.gene31139:intron | 15.0% |
| !!! | GTTTTTTCTTTTATCTAAAT+TGG | + | chr2.4:6431374-6431393 | MS.gene31139:intron | 15.0% |
| !! | AACAATGAAAATAATAACGT+TGG | - | chr2.4:6429073-6429092 | None:intergenic | 20.0% |
| !! | ATGAACATGTGTTTATAAAT+GGG | + | chr2.4:6429650-6429669 | MS.gene31139:intron | 20.0% |
| !! | TACATTAATCAAGTTATGAT+TGG | + | chr2.4:6429307-6429326 | MS.gene31139:intron | 20.0% |
| !!! | AGTAGTATTTAATCTAAAGT+TGG | + | chr2.4:6431121-6431140 | MS.gene31139:intron | 20.0% |
| !!! | TTGTTTTTACATAAATGTTC+TGG | + | chr2.4:6430338-6430357 | MS.gene31139:intron | 20.0% |
| ! | CAAAATGGAAAGAAATAGAA+TGG | - | chr2.4:6430701-6430720 | None:intergenic | 25.0% |
| ! | CATGAACATGTGTTTATAAA+TGG | + | chr2.4:6429649-6429668 | MS.gene31139:intron | 25.0% |
| ! | GAACTAGAAAATAGAATTGA+TGG | - | chr2.4:6431313-6431332 | None:intergenic | 25.0% |
| ! | GCTATTGCAAATACATAATT+TGG | - | chr2.4:6429971-6429990 | None:intergenic | 25.0% |
| ! | GTTGTAATAAATTTAGCTGT+TGG | + | chr2.4:6430769-6430788 | MS.gene31139:CDS | 25.0% |
| ! | TATCTGCCTAAAATTAAGAT+TGG | - | chr2.4:6430006-6430025 | None:intergenic | 25.0% |
| ! | TATGTATTTGCAATAGCTAA+TGG | + | chr2.4:6429974-6429993 | MS.gene31139:intron | 25.0% |
| ! | TGAACATGTGTTTATAAATG+GGG | + | chr2.4:6429651-6429670 | MS.gene31139:intron | 25.0% |
| ! | TTAATCAAGTTATGATTGGT+TGG | + | chr2.4:6429311-6429330 | MS.gene31139:intron | 25.0% |
| ! | TTCATAGATTACATTCTCTA+TGG | + | chr2.4:6429892-6429911 | MS.gene31139:intron | 25.0% |
| !! | ACAGTACCAATCTTAATTTT+AGG | + | chr2.4:6429997-6430016 | MS.gene31139:intron | 25.0% |
| !! | ATGTTGAGTCTTCTTTTTAT+TGG | + | chr2.4:6430197-6430216 | MS.gene31139:CDS | 25.0% |
| !! | GTCTTCTTTTTATTGGAATT+CGG | + | chr2.4:6430204-6430223 | MS.gene31139:CDS | 25.0% |
| !!! | AATTTTGACAGATTCATTAC+TGG | + | chr2.4:6431146-6431165 | MS.gene31139:intron | 25.0% |
| !!! | ATTTTGACAGATTCATTACT+GGG | + | chr2.4:6431147-6431166 | MS.gene31139:intron | 25.0% |
| !!! | TTTTAGTTCATTCACCTTAT+TGG | - | chr2.4:6430614-6430633 | None:intergenic | 25.0% |
| AAAAACCTAATAGATGTGTG+AGG | + | chr2.4:6429833-6429852 | MS.gene31139:intron | 30.0% | |
| AAAAAGAAGACTCAACATGT+TGG | - | chr2.4:6430195-6430214 | None:intergenic | 30.0% | |
| AAAACCTAATAGATGTGTGA+GGG | + | chr2.4:6429834-6429853 | MS.gene31139:intron | 30.0% | |
| AACAAAAACGTGTGTTTGTA+AGG | + | chr2.4:6429792-6429811 | MS.gene31139:intron | 30.0% | |
| AACATGTGTTTATAAATGGG+GGG | + | chr2.4:6429653-6429672 | MS.gene31139:intron | 30.0% | |
| ACAATATTCTATGCAGACAA+CGG | + | chr2.4:6431404-6431423 | MS.gene31139:intron | 30.0% | |
| ACCTTATCAATATGTGTTGT+GGG | + | chr2.4:6430951-6430970 | MS.gene31139:CDS | 30.0% | |
| CAAAACATCATGAGACAAAA+TGG | - | chr2.4:6430716-6430735 | None:intergenic | 30.0% | |
| CCAAGTCCTAAGAATATTAA+AGG | - | chr2.4:6431044-6431063 | None:intergenic | 30.0% | |
| CCTTTAATATTCTTAGGACT+TGG | + | chr2.4:6431041-6431060 | MS.gene31139:intron | 30.0% | |
| CTTGAACAAGAATTTGGATT+TGG | + | chr2.4:6430227-6430246 | MS.gene31139:CDS | 30.0% | |
| GAAAAAGAAAACTCACGTAA+AGG | - | chr2.4:6429211-6429230 | None:intergenic | 30.0% | |
| GAACATGTGTTTATAAATGG+GGG | + | chr2.4:6429652-6429671 | MS.gene31139:intron | 30.0% | |
| GAATGTAATCTATGAATCAC+CGG | - | chr2.4:6429888-6429907 | None:intergenic | 30.0% | |
| GGAAAGAAATAGAATGGTTT+AGG | - | chr2.4:6430695-6430714 | None:intergenic | 30.0% | |
| TACCTTATCAATATGTGTTG+TGG | + | chr2.4:6430950-6430969 | MS.gene31139:CDS | 30.0% | |
| TGAGAATGAGTTTATTAGTG+TGG | + | chr2.4:6429432-6429451 | MS.gene31139:intron | 30.0% | |
| TTAATATTTACTCCTTCGTC+CGG | - | chr2.4:6429738-6429757 | None:intergenic | 30.0% | |
| ! | ACAAGAATTTGGATTTGGTA+TGG | + | chr2.4:6430232-6430251 | MS.gene31139:intron | 30.0% |
| ! | ACACTTTAGATGTCTAAGAT+TGG | + | chr2.4:6429585-6429604 | MS.gene31139:intron | 30.0% |
| ! | ACTTTAGATGTCTAAGATTG+GGG | + | chr2.4:6429587-6429606 | MS.gene31139:intron | 30.0% |
| ! | ATTTTCAGATTACAGGAGAT+GGG | + | chr2.4:6430077-6430096 | MS.gene31139:intron | 30.0% |
| ! | CACTTTAGATGTCTAAGATT+GGG | + | chr2.4:6429586-6429605 | MS.gene31139:intron | 30.0% |
| ! | GTTTTCTTTAAGTGGTTGAA+AGG | - | chr2.4:6429169-6429188 | None:intergenic | 30.0% |
| ! | TTTTAGGCAGATATATCTCT+TGG | + | chr2.4:6430013-6430032 | MS.gene31139:intron | 30.0% |
| !! | AGTTAAATTGATTCGAGCTA+AGG | + | chr2.4:6429682-6429701 | MS.gene31139:intron | 30.0% |
| !! | GTTAAATTGATTCGAGCTAA+GGG | + | chr2.4:6429683-6429702 | MS.gene31139:intron | 30.0% |
| !! | TACAGATAATGGAATACTGT+TGG | - | chr2.4:6430309-6430328 | None:intergenic | 30.0% |
| AAAACTCACGTAAAGGAAGA+AGG | - | chr2.4:6429204-6429223 | None:intergenic | 35.0% | |
| AAGGAGAATCTTCCAAGAAA+AGG | - | chr2.4:6429150-6429169 | None:intergenic | 35.0% | |
| AATCCAATTCTAACTGCGAA+AGG | - | chr2.4:6430448-6430467 | None:intergenic | 35.0% | |
| ACCCACAACACATATTGATA+AGG | - | chr2.4:6430955-6430974 | None:intergenic | 35.0% | |
| ATCCAGATTTAGACTGTTGT+TGG | - | chr2.4:6430897-6430916 | None:intergenic | 35.0% | |
| ATTTCAGGCTCTTTAAGCAA+TGG | + | chr2.4:6429016-6429035 | MS.gene31139:CDS | 35.0% | |
| CGATATACTTGAACAATGCA+AGG | - | chr2.4:6430271-6430290 | None:intergenic | 35.0% | |
| CTTAAAGAAAACCCTCTCTT+TGG | + | chr2.4:6429177-6429196 | MS.gene31139:CDS | 35.0% | |
| CTTTCCTATTACTCATTGCA+GGG | + | chr2.4:6430980-6430999 | MS.gene31139:CDS | 35.0% | |
| GGATTTCTCTATGTGATATC+TGG | + | chr2.4:6430463-6430482 | MS.gene31139:CDS | 35.0% | |
| GTCTGCGTTATTCATACAAA+CGG | + | chr2.4:6430504-6430523 | MS.gene31139:CDS | 35.0% | |
| TAAACTGAGGACGAATCAAA+AGG | - | chr2.4:6430864-6430883 | None:intergenic | 35.0% | |
| TAATATTTACTCCTTCGTCC+GGG | - | chr2.4:6429737-6429756 | None:intergenic | 35.0% | |
| TCTCAGAGCTCTTCATTAAT+TGG | + | chr2.4:6430578-6430597 | MS.gene31139:CDS | 35.0% | |
| TCTGCGTTATTCATACAAAC+GGG | + | chr2.4:6430505-6430524 | MS.gene31139:CDS | 35.0% | |
| TCTTTCCTATTACTCATTGC+AGG | + | chr2.4:6430979-6430998 | MS.gene31139:CDS | 35.0% | |
| TGATTCGTCCTCAGTTTAAA+TGG | + | chr2.4:6430866-6430885 | MS.gene31139:CDS | 35.0% | |
| TGGCTTATCCATTTAAACTG+AGG | - | chr2.4:6430877-6430896 | None:intergenic | 35.0% | |
| TTGGACGATATATGCCAATA+AGG | + | chr2.4:6430597-6430616 | MS.gene31139:CDS | 35.0% | |
| TTTCAGGCTCTTTAAGCAAT+GGG | + | chr2.4:6429017-6429036 | MS.gene31139:CDS | 35.0% | |
| ! | AAGAGAGGGTTTTCTTTAAG+TGG | - | chr2.4:6429177-6429196 | None:intergenic | 35.0% |
| ! | ATTCGGCTTGAACAAGAATT+TGG | + | chr2.4:6430221-6430240 | MS.gene31139:CDS | 35.0% |
| ! | ATTTGGATTTGGTATGGTTC+TGG | + | chr2.4:6430238-6430257 | MS.gene31139:intron | 35.0% |
| ! | CATTTTCAGATTACAGGAGA+TGG | + | chr2.4:6430076-6430095 | MS.gene31139:intron | 35.0% |
| ! | CTTTAGATGTCTAAGATTGG+GGG | + | chr2.4:6429588-6429607 | MS.gene31139:intron | 35.0% |
| ! | GGAACAAAGCATTTATTGTG+AGG | + | chr2.4:6431262-6431281 | MS.gene31139:CDS | 35.0% |
| ! | TACTCGCATTTTCAGATTAC+AGG | + | chr2.4:6430070-6430089 | MS.gene31139:intron | 35.0% |
| !! | CTCTATGTGATATCTGGTTT+TGG | + | chr2.4:6430469-6430488 | MS.gene31139:CDS | 35.0% |
| !! | GATAATGGAATACTGTTGGT+CGG | - | chr2.4:6430305-6430324 | None:intergenic | 35.0% |
| !! | TGCTCTAGAAGTAGATAAAG+TGG | + | chr2.4:6430100-6430119 | MS.gene31139:CDS | 35.0% |
| !!! | ATGTGATATCTGGTTTTGGA+GGG | + | chr2.4:6430473-6430492 | MS.gene31139:CDS | 35.0% |
| !!! | TATGTGATATCTGGTTTTGG+AGG | + | chr2.4:6430472-6430491 | MS.gene31139:CDS | 35.0% |
| AAAGTGGTTCATGAACACGA+AGG | + | chr2.4:6430116-6430135 | MS.gene31139:CDS | 40.0% | |
| AACATCACATGCATGAGCAA+TGG | + | chr2.4:6431444-6431463 | MS.gene31139:CDS | 40.0% | |
| ACAAAAGTTGGAACAAGCCA+TGG | - | chr2.4:6429045-6429064 | None:intergenic | 40.0% | |
| ACAACCCTCACACATCTATT+AGG | - | chr2.4:6429841-6429860 | None:intergenic | 40.0% | |
| ACGTTGGCAAACACAAAAGT+TGG | - | chr2.4:6429057-6429076 | None:intergenic | 40.0% | |
| AGCCAACAACAGTCTAAATC+TGG | + | chr2.4:6430892-6430911 | MS.gene31139:CDS | 40.0% | |
| AGGATGAACCTTAACCTCAA+CGG | - | chr2.4:6428941-6428960 | None:intergenic | 40.0% | |
| CGAAATTGTCAACATGTGGA+AGG | - | chr2.4:6430798-6430817 | None:intergenic | 40.0% | |
| CTTACCCTGCAATGAGTAAT+AGG | - | chr2.4:6430987-6431006 | None:intergenic | 40.0% | |
| CTTGTATATGGTTGCATGGT+GGG | + | chr2.4:6430153-6430172 | MS.gene31139:CDS | 40.0% | |
| GCAACCATATACAAGAGACA+AGG | - | chr2.4:6430148-6430167 | None:intergenic | 40.0% | |
| GCCTAACTCATTCACAAAAC+TGG | - | chr2.4:6429477-6429496 | None:intergenic | 40.0% | |
| GTACCATGAAATGCATTCTC+AGG | - | chr2.4:6429117-6429136 | None:intergenic | 40.0% | |
| GTCTCTTGTATATGGTTGCA+TGG | + | chr2.4:6430149-6430168 | MS.gene31139:CDS | 40.0% | |
| GTGTGTTTGTAAGGATGCAT+AGG | + | chr2.4:6429801-6429820 | MS.gene31139:intron | 40.0% | |
| GTGTTTATAAATGGGGGGTT+GGG | + | chr2.4:6429658-6429677 | MS.gene31139:intron | 40.0% | |
| GTTGACAATTTCGCTCATCT+AGG | + | chr2.4:6430805-6430824 | MS.gene31139:CDS | 40.0% | |
| GTTGTGTTCCTACCTCAAAA+TGG | + | chr2.4:6431231-6431250 | MS.gene31139:CDS | 40.0% | |
| TAACTGCGAAAGGACAAGAA+AGG | - | chr2.4:6430438-6430457 | None:intergenic | 40.0% | |
| TACCTCAAAATGGAGTTGTC+AGG | + | chr2.4:6431241-6431260 | MS.gene31139:CDS | 40.0% | |
| TCAACATGTTGGCAAGTACA+TGG | - | chr2.4:6430184-6430203 | None:intergenic | 40.0% | |
| TCTATGCAGACAACGGAATT+CGG | + | chr2.4:6431411-6431430 | MS.gene31139:intron | 40.0% | |
| TCTTGTATATGGTTGCATGG+TGG | + | chr2.4:6430152-6430171 | MS.gene31139:CDS | 40.0% | |
| TGACAGATTCATTACTGGGA+TGG | + | chr2.4:6431151-6431170 | MS.gene31139:intron | 40.0% | |
| TGAGCGAAATTGTCAACATG+TGG | - | chr2.4:6430802-6430821 | None:intergenic | 40.0% | |
| TGTCCTGAGAATGCATTTCA+TGG | + | chr2.4:6429111-6429130 | MS.gene31139:CDS | 40.0% | |
| TGTCCTTTCGCAGTTAGAAT+TGG | + | chr2.4:6430442-6430461 | MS.gene31139:intron | 40.0% | |
| TGTGTTTATAAATGGGGGGT+TGG | + | chr2.4:6429657-6429676 | MS.gene31139:intron | 40.0% | |
| TTGTATATGGTTGCATGGTG+GGG | + | chr2.4:6430154-6430173 | MS.gene31139:CDS | 40.0% | |
| ! | ATGTCTAAGATTGGGGGTAA+GGG | + | chr2.4:6429594-6429613 | MS.gene31139:intron | 40.0% |
| ! | GTCTCATGATGTTTTGCAGA+TGG | + | chr2.4:6430720-6430739 | MS.gene31139:intron | 40.0% |
| ! | TCTTTAAGCAATGGGTTCCA+TGG | + | chr2.4:6429025-6429044 | MS.gene31139:CDS | 40.0% |
| ! | TTCCTGACAACTCCATTTTG+AGG | - | chr2.4:6431246-6431265 | None:intergenic | 40.0% |
| !! | ACTTGTGTTGCTCCTTTTCT+TGG | + | chr2.4:6429135-6429154 | MS.gene31139:CDS | 40.0% |
| !! | GCCAGTTTTGTGAATGAGTT+AGG | + | chr2.4:6429473-6429492 | MS.gene31139:intron | 40.0% |
| !!! | TGACAACTCCATTTTGAGGT+AGG | - | chr2.4:6431242-6431261 | None:intergenic | 40.0% |
| AAATCACGATCACGAGTGAC+GGG | - | chr2.4:6429000-6429019 | None:intergenic | 45.0% | |
| AAGGAAGAAGGACCAAAGAG+AGG | - | chr2.4:6429192-6429211 | None:intergenic | 45.0% | |
| ACTTGAATGAACGTTGCTCG+TGG | + | chr2.4:6431195-6431214 | MS.gene31139:CDS | 45.0% | |
| AGGAAGAAGGACCAAAGAGA+GGG | - | chr2.4:6429191-6429210 | None:intergenic | 45.0% | |
| ATACAAACGGGCATCTCAGT+TGG | + | chr2.4:6430517-6430536 | MS.gene31139:CDS | 45.0% | |
| ATGAACCTTAACCTCAACGG+TGG | - | chr2.4:6428938-6428957 | None:intergenic | 45.0% | |
| CGAGCTAAGGGATAAGAAGT+TGG | + | chr2.4:6429695-6429714 | MS.gene31139:intron | 45.0% | |
| CTTTGTTCGCAACTTTGCCA+TGG | + | chr2.4:6431519-6431538 | MS.gene31139:CDS | 45.0% | |
| GAAATCACGATCACGAGTGA+CGG | - | chr2.4:6429001-6429020 | None:intergenic | 45.0% | |
| GAAGAGCTAGTATTCGACAG+AGG | - | chr2.4:6431486-6431505 | None:intergenic | 45.0% | |
| GACAATTTCGCTCATCTAGG+AGG | + | chr2.4:6430808-6430827 | MS.gene31139:CDS | 45.0% | |
| GCTAAGGGATAAGAAGTTGG+AGG | + | chr2.4:6429698-6429717 | MS.gene31139:intron | 45.0% | |
| TCACTCGTGATCGTGATTTC+AGG | + | chr2.4:6429001-6429020 | MS.gene31139:CDS | 45.0% | |
| TCTTGTGTCTGTGTCTCTAC+CGG | + | chr2.4:6429866-6429885 | MS.gene31139:intron | 45.0% | |
| TGGTTCATGAACACGAAGGT+TGG | + | chr2.4:6430120-6430139 | MS.gene31139:CDS | 45.0% | |
| TTCGCTCATCTAGGAGGATT+TGG | + | chr2.4:6430814-6430833 | MS.gene31139:CDS | 45.0% | |
| ! | CATCTAAAGTGTGACTCGTG+TGG | - | chr2.4:6429577-6429596 | None:intergenic | 45.0% |
| ! | CATCTAGGAGGATTTGGTTC+TGG | + | chr2.4:6430820-6430839 | MS.gene31139:CDS | 45.0% |
| ! | CATTGTTTGGCTTACTCGGA+GGG | + | chr2.4:6430551-6430570 | MS.gene31139:CDS | 45.0% |
| ! | GATGTCTAAGATTGGGGGTA+AGG | + | chr2.4:6429593-6429612 | MS.gene31139:intron | 45.0% |
| ! | GGTGCATTGTTTGGCTTACT+CGG | + | chr2.4:6430547-6430566 | MS.gene31139:CDS | 45.0% |
| !! | GGAGGTTCTAAGTTCAAACC+CGG | + | chr2.4:6429716-6429735 | MS.gene31139:intron | 45.0% |
| !! | TTTGGTTCTGGCTTTCTGCT+TGG | + | chr2.4:6430832-6430851 | MS.gene31139:CDS | 45.0% |
| CTAAGTTCAAACCCGGACGA+AGG | + | chr2.4:6429723-6429742 | MS.gene31139:intron | 50.0% | |
| GCTATCTGGCCACCATTATC+AGG | + | chr2.4:6429551-6429570 | MS.gene31139:intron | 50.0% | |
| GGCGCCTTGTCTCTTGTATA+TGG | + | chr2.4:6430141-6430160 | MS.gene31139:CDS | 50.0% | |
| GGTGCATCTGGTGCATTGTT+TGG | + | chr2.4:6430538-6430557 | MS.gene31139:CDS | 50.0% | |
| TGACTCGTGTGGCCTGATAA+TGG | - | chr2.4:6429566-6429585 | None:intergenic | 50.0% | |
| TTAAGGTTCATCCTCGCCGT+GGG | + | chr2.4:6428947-6428966 | MS.gene31139:CDS | 50.0% | |
| ! | GATAATGGTGGCCAGATAGC+AGG | - | chr2.4:6429551-6429570 | None:intergenic | 50.0% |
| ! | GCATTGTTTGGCTTACTCGG+AGG | + | chr2.4:6430550-6430569 | MS.gene31139:CDS | 50.0% |
| ! | GGGATGGTTCTACTCTTTCG+AGG | + | chr2.4:6431167-6431186 | MS.gene31139:CDS | 50.0% |
| AATGGTGGCCAGATAGCAGG+CGG | - | chr2.4:6429548-6429567 | None:intergenic | 55.0% | |
| CCAGATAGCAGGCGGTTCAA+TGG | - | chr2.4:6429540-6429559 | None:intergenic | 55.0% | |
| CCATTGAACCGCCTGCTATC+TGG | + | chr2.4:6429537-6429556 | MS.gene31139:intron | 55.0% | |
| GCAGGCGGTTCAATGGATCT+TGG | - | chr2.4:6429533-6429552 | None:intergenic | 55.0% | |
| GGATTCGACGACGACGAAGA+CGG | - | chr2.4:6428976-6428995 | None:intergenic | 55.0% | |
| GTTAAGGTTCATCCTCGCCG+TGG | + | chr2.4:6428946-6428965 | MS.gene31139:CDS | 55.0% | |
| TGGCACCACCGTTGAGGTTA+AGG | + | chr2.4:6428930-6428949 | MS.gene31139:CDS | 55.0% | |
| ! | GGCATCTCAGTTGGTGCATC+TGG | + | chr2.4:6430526-6430545 | MS.gene31139:CDS | 55.0% |
| !! | CTCGTGTGGCCTGATAATGG+TGG | - | chr2.4:6429563-6429582 | None:intergenic | 55.0% |
| ACATGGTGGCACCACCGTTG+AGG | + | chr2.4:6428924-6428943 | MS.gene31139:CDS | 60.0% | |
| ACGACGAAGACGGAGACCCA+CGG | - | chr2.4:6428966-6428985 | None:intergenic | 60.0% | |
| AGTGGAGGGAGGAACCCACA+TGG | + | chr2.4:6428907-6428926 | MS.gene31139:CDS | 60.0% | |
| ! | TCACGATCACGAGTGACGGG+AGG | - | chr2.4:6428997-6429016 | None:intergenic | 60.0% |
| !! | CAACGGTGGTGCCACCATGT+GGG | - | chr2.4:6428924-6428943 | None:intergenic | 60.0% |
| !! | TCAACGGTGGTGCCACCATG+TGG | - | chr2.4:6428925-6428944 | None:intergenic | 60.0% |
| GGAGGGAGGAACCCACATGG+TGG | + | chr2.4:6428910-6428929 | MS.gene31139:CDS | 65.0% | |
| GAAGACGGAGACCCACGGCG+AGG | - | chr2.4:6428961-6428980 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 6428904 | 6431545 | 6428904 | ID=MS.gene31139 |
| chr2.4 | mRNA | 6428904 | 6431545 | 6428904 | ID=MS.gene31139.t1;Parent=MS.gene31139 |
| chr2.4 | exon | 6428904 | 6429214 | 6428904 | ID=MS.gene31139.t1.exon1;Parent=MS.gene31139.t1 |
| chr2.4 | CDS | 6428904 | 6429214 | 6428904 | ID=cds.MS.gene31139.t1;Parent=MS.gene31139.t1 |
| chr2.4 | exon | 6430085 | 6430248 | 6430085 | ID=MS.gene31139.t1.exon2;Parent=MS.gene31139.t1 |
| chr2.4 | CDS | 6430085 | 6430248 | 6430085 | ID=cds.MS.gene31139.t1;Parent=MS.gene31139.t1 |
| chr2.4 | exon | 6430455 | 6430618 | 6430455 | ID=MS.gene31139.t1.exon3;Parent=MS.gene31139.t1 |
| chr2.4 | CDS | 6430455 | 6430618 | 6430455 | ID=cds.MS.gene31139.t1;Parent=MS.gene31139.t1 |
| chr2.4 | exon | 6430739 | 6431001 | 6430739 | ID=MS.gene31139.t1.exon4;Parent=MS.gene31139.t1 |
| chr2.4 | CDS | 6430739 | 6431001 | 6430739 | ID=cds.MS.gene31139.t1;Parent=MS.gene31139.t1 |
| chr2.4 | exon | 6431157 | 6431283 | 6431157 | ID=MS.gene31139.t1.exon5;Parent=MS.gene31139.t1 |
| chr2.4 | CDS | 6431157 | 6431283 | 6431157 | ID=cds.MS.gene31139.t1;Parent=MS.gene31139.t1 |
| chr2.4 | exon | 6431420 | 6431545 | 6431420 | ID=MS.gene31139.t1.exon6;Parent=MS.gene31139.t1 |
| chr2.4 | CDS | 6431420 | 6431545 | 6431420 | ID=cds.MS.gene31139.t1;Parent=MS.gene31139.t1 |
| Gene Sequence |
| Protein sequence |
