AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55425

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55425.t1 MTR_6g021950 98.030 406 6 1 1 406 1 404 0.0 823
MS.gene55425.t1 MTR_4g104320 81.152 382 71 1 26 406 26 407 0.0 637
MS.gene55425.t1 MTR_3g075320 75.616 406 99 0 1 406 1 406 0.0 615
MS.gene55425.t1 MTR_3g086310 74.250 400 100 2 7 406 7 403 0.0 585
MS.gene55425.t1 MTR_1g047370 67.885 383 123 0 24 406 68 450 0.0 563
MS.gene55425.t1 MTR_7g059290 65.803 386 132 0 21 406 59 444 0.0 548
MS.gene55425.t1 MTR_3g086320 66.585 407 131 5 3 406 2 406 0.0 532
MS.gene55425.t1 MTR_1g111590 61.179 407 149 2 1 398 1 407 0.0 520
MS.gene55425.t1 MTR_1g062930 59.611 411 157 2 1 404 9 417 0.0 516
MS.gene55425.t1 MTR_7g102940 59.611 411 156 2 4 404 2 412 2.22e-177 503
MS.gene55425.t1 MTR_4g107870 57.487 374 154 3 36 406 63 434 8.12e-160 457
MS.gene55425.t1 MTR_3g075320 74.564 287 73 0 1 287 1 287 2.44e-155 440
MS.gene55425.t1 MTR_5g038510 56.250 368 160 1 40 406 82 449 7.69e-153 440
MS.gene55425.t1 MTR_8g468980 53.616 401 170 4 22 406 55 455 4.09e-151 436
MS.gene55425.t1 MTR_4g132460 60.857 350 133 3 58 406 39 385 7.98e-151 432
MS.gene55425.t1 MTR_5g038490 55.928 388 162 3 28 406 62 449 1.13e-149 432
MS.gene55425.t1 MTR_2g023990 52.415 414 181 5 1 406 4 409 9.22e-147 423
MS.gene55425.t1 MTR_6g011420 53.046 394 172 3 26 406 60 453 2.17e-145 421
MS.gene55425.t1 MTR_7g009390 58.192 354 147 1 54 406 98 451 2.26e-142 413
MS.gene55425.t1 MTR_8g078390 41.912 408 206 7 4 406 11 392 4.85e-99 300
MS.gene55425.t1 MTR_3g030900 45.000 360 178 7 58 406 23 373 7.47e-97 294
MS.gene55425.t1 MTR_8g078310 45.198 354 186 6 58 406 42 392 9.14e-97 295
MS.gene55425.t1 MTR_8g078350 45.198 354 186 6 58 406 42 392 5.56e-91 280
MS.gene55425.t1 MTR_3g070740 65.366 205 58 2 203 406 134 326 1.15e-90 277
MS.gene55425.t1 MTR_4g064420 44.540 348 172 7 58 402 42 371 2.22e-89 276
MS.gene55425.t1 MTR_8g078280 43.503 354 192 6 58 406 42 392 2.99e-89 275
MS.gene55425.t1 MTR_5g019060 42.373 354 196 6 58 406 41 391 7.35e-84 261
MS.gene55425.t1 MTR_5g035840 42.373 354 196 6 58 406 41 391 1.34e-83 261
MS.gene55425.t1 MTR_5g019160 42.090 354 197 6 58 406 41 391 3.32e-83 260
MS.gene55425.t1 MTR_5g019170 42.609 345 190 6 58 397 41 382 8.62e-81 255
MS.gene55425.t1 MTR_5g019090 42.090 354 197 6 58 406 41 391 1.64e-80 253
MS.gene55425.t1 MTR_2g023980 50.584 257 93 6 133 387 1 225 6.35e-73 231
MS.gene55425.t1 MTR_1g069950 43.657 268 147 3 133 398 1 266 2.37e-68 218
MS.gene55425.t1 MTR_6g077900 43.253 289 141 7 91 376 6 274 1.53e-58 192
MS.gene55425.t1 MTR_1g115550 38.699 292 153 7 71 361 9 275 3.16e-49 169
MS.gene55425.t1 MTR_1g067450 36.491 285 157 4 77 361 64 324 1.59e-39 145
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55425.t1 AT5G63180 71.990 407 112 1 2 406 26 432 0.0 615
MS.gene55425.t1 AT3G27400 71.671 413 109 3 1 406 5 416 0.0 613
MS.gene55425.t1 AT3G27400 71.671 413 109 3 1 406 1 412 0.0 613
MS.gene55425.t1 AT1G67750 73.779 389 100 1 18 406 22 408 0.0 605
MS.gene55425.t1 AT4G24780 71.744 407 113 2 1 406 3 408 0.0 594
MS.gene55425.t1 AT4G24780 71.744 407 113 2 1 406 3 408 0.0 594
MS.gene55425.t1 AT4G13710 66.412 393 128 1 18 406 78 470 0.0 586
MS.gene55425.t1 AT4G13710 66.412 393 128 1 18 406 59 451 0.0 584
MS.gene55425.t1 AT3G07010 66.910 411 124 2 8 406 6 416 0.0 570
MS.gene55425.t1 AT3G07010 70.822 377 110 0 30 406 7 383 0.0 565
MS.gene55425.t1 AT1G04680 67.358 386 122 1 25 406 44 429 0.0 553
MS.gene55425.t1 AT3G24670 68.325 382 121 0 25 406 59 440 0.0 548
MS.gene55425.t1 AT3G24230 64.767 386 131 2 25 406 67 451 0.0 542
MS.gene55425.t1 AT5G48900 65.291 412 131 1 7 406 6 417 0.0 537
MS.gene55425.t1 AT4G13210 68.146 383 121 1 25 406 56 438 0.0 525
MS.gene55425.t1 AT4G13210 68.146 383 121 1 25 406 19 401 0.0 523
MS.gene55425.t1 AT3G53190 61.259 413 145 2 1 398 2 414 0.0 516
MS.gene55425.t1 AT5G04310 62.402 383 131 1 29 398 53 435 6.88e-171 486
MS.gene55425.t1 AT5G04310 62.402 383 131 1 29 398 53 435 8.33e-170 485
MS.gene55425.t1 AT5G04310 62.402 383 131 1 29 398 53 435 8.33e-170 485
MS.gene55425.t1 AT5G55720 56.927 397 159 3 11 406 7 392 3.81e-167 474
MS.gene55425.t1 AT3G54920 59.481 385 132 4 29 398 37 412 1.55e-166 476
MS.gene55425.t1 AT1G14420 54.211 380 166 2 35 406 80 459 1.38e-150 434
MS.gene55425.t1 AT1G11920 58.000 350 144 3 58 406 37 384 2.65e-147 423
MS.gene55425.t1 AT4G22090 57.429 350 145 3 58 406 47 393 4.35e-145 418
MS.gene55425.t1 AT5G15110 55.211 355 157 2 54 406 118 472 9.88e-145 420
MS.gene55425.t1 AT3G01270 56.056 355 154 2 54 406 121 475 1.04e-144 420
MS.gene55425.t1 AT4G22080 57.143 350 146 3 58 406 47 393 6.08e-143 412
MS.gene55425.t1 AT2G02720 53.521 355 159 1 58 406 101 455 1.54e-139 406
MS.gene55425.t1 AT1G30350 52.010 398 158 5 9 406 4 368 2.42e-138 400
MS.gene55425.t1 AT5G09280 47.984 248 127 2 91 337 6 252 1.54e-77 242
MS.gene55425.t1 AT3G55140 39.161 286 148 7 77 361 16 276 2.07e-49 170
MS.gene55425.t1 AT3G09540 35.764 288 159 5 75 361 61 323 1.52e-42 153
MS.gene55425.t1 AT3G55140 38.645 251 133 6 112 361 22 252 4.24e-41 147
MS.gene55425.t1 AT3G09540 35.417 288 156 6 75 361 61 319 1.76e-40 148
MS.gene55425.t1 AT3G09540 35.102 245 135 4 75 319 61 281 6.11e-35 130

Find 77 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTAATTCACAACATATT+TGG 0.148343 6.2:-15429674 MS.gene55425:CDS
GAAGAGGATGAAACAAAATT+TGG 0.190078 6.2:+15431176 None:intergenic
CACCAGAACATAGTGGATTT+TGG 0.212123 6.2:-15429725 MS.gene55425:CDS
ATGCATACCTTGGCATTCTT+TGG 0.240400 6.2:+15429457 None:intergenic
ATCTACATTGTCACTGATTC+AGG 0.262745 6.2:-15430017 MS.gene55425:CDS
GTTGGAGATGTGACCCAAAT+TGG 0.281666 6.2:-15430115 MS.gene55425:CDS
TCAATTAAAACAAGAACTTT+TGG 0.293810 6.2:-15429898 MS.gene55425:CDS
TCATGACAAAGTTATGCTTT+TGG 0.300199 6.2:-15429556 MS.gene55425:CDS
GCTGATTGTGCAATTGGATT+TGG 0.305034 6.2:-15430071 MS.gene55425:CDS
CAATTCAAGATGAACCATTA+TGG 0.310393 6.2:-15429947 MS.gene55425:CDS
TCCTTGCTAAATCTATTATC+TGG 0.317797 6.2:+15428566 None:intergenic
GGTTCCATCACTACTACTTC+TGG 0.332285 6.2:-15428377 MS.gene55425:CDS
GCACCATACCTTAATGTTCC+TGG 0.337883 6.2:+15429969 None:intergenic
TTCCCTTGGCTGTTGATTGT+AGG 0.338196 6.2:+15428602 None:intergenic
GGTCTTATTGACGTTATTCA+TGG 0.341379 6.2:-15429618 MS.gene55425:CDS
ACATCTTGTACAACAAGTTC+AGG 0.356255 6.2:+15431143 None:intergenic
AGACTAGCTGATTGTGCAAT+TGG 0.358822 6.2:-15430077 MS.gene55425:CDS
ATCCTAAGCCAGGAACATTA+AGG 0.360668 6.2:-15429977 MS.gene55425:CDS
GTGAATATAATAGCTGGAAT+TGG 0.370547 6.2:-15428514 MS.gene55425:CDS
CACAATCAGCTAGTCTTTGT+CGG 0.381751 6.2:+15430084 None:intergenic
GCAAGACCAGCCTCTCTTGT+TGG 0.384223 6.2:-15428398 MS.gene55425:CDS
GTTCATGATTGTGTTCCAAC+AGG 0.393072 6.2:-15429768 MS.gene55425:CDS
GAGGGTGATTTGTTCTTGAA+TGG 0.394829 6.2:-15428485 MS.gene55425:CDS
CTCTAGGTCTAGGAGAAACT+TGG 0.396252 6.2:-15430177 MS.gene55425:CDS
AAGAGGATGAAACAAAATTT+GGG 0.396495 6.2:+15431177 None:intergenic
TACCTTAATGTTCCTGGCTT+AGG 0.403706 6.2:+15429975 None:intergenic
GGCTATTTATCATGTGGAAC+TGG 0.405816 6.2:-15430155 MS.gene55425:CDS
CTAATATTTGTGTTCCCTGT+TGG 0.412545 6.2:+15429753 None:intergenic
GGAGCATTCTTTAGACAAAC+TGG 0.421504 6.2:-15428464 MS.gene55425:CDS
TCCCTTGGCTGTTGATTGTA+GGG 0.426471 6.2:+15428603 None:intergenic
AATTCATACAAGACAATTGA+TGG 0.427271 6.2:-15429873 MS.gene55425:CDS
GATCATATTCAAAAGAGATA+TGG 0.439191 6.2:-15429925 MS.gene55425:CDS
GCAATCCAATTGATGATTGT+TGG 0.439325 6.2:-15430133 MS.gene55425:CDS
CATCTCCAACAATCATCAAT+TGG 0.440002 6.2:+15430128 None:intergenic
GAACAATGATTACACACATT+GGG 0.453403 6.2:-15428654 MS.gene55425:CDS
GTTAATAATGTTATAATACA+TGG 0.461906 6.2:-15429798 MS.gene55425:CDS
GGATTTGGAAAAGATGCAAT+TGG 0.464882 6.2:-15430056 MS.gene55425:CDS
CAGAAAGTGAATATAATAGC+TGG 0.465031 6.2:-15428520 MS.gene55425:CDS
GTCCAAAATCCACTATGTTC+TGG 0.466293 6.2:+15429723 None:intergenic
GTGCAAGAAATCTGTTCCCT+TGG 0.476596 6.2:+15428588 None:intergenic
GCATCAATGTCTCTAGGTCT+AGG 0.489694 6.2:-15430187 MS.gene55425:CDS
TTGGAGATGTGACCCAAATT+GGG 0.498861 6.2:-15430114 MS.gene55425:CDS
TGCACTAAGACTTGAAGCTC+TGG 0.504961 6.2:+15428418 None:intergenic
GGTGTGCTCACTTGCAAGAA+GGG 0.516097 6.2:-15428356 MS.gene55425:CDS
TGGTGTGCTCACTTGCAAGA+AGG 0.516822 6.2:-15428357 MS.gene55425:CDS
AAGAACGAGAAAGCAAGAAA+AGG 0.525187 6.2:+15431220 None:intergenic
AGCTGGAATTGGAGATCAGA+GGG 0.527960 6.2:-15428503 MS.gene55425:CDS
TCTTTGTCTAATTGTCGTGA+TGG 0.533384 6.2:-15429639 MS.gene55425:CDS
CATTGGGAAATGTATGCAAT+TGG 0.540092 6.2:-15428638 MS.gene55425:CDS
ATGGAACCAACAAGAGAGGC+TGG 0.542918 6.2:+15428392 None:intergenic
GTAGGAGCATCAATGTCTCT+AGG 0.545125 6.2:-15430193 MS.gene55425:intron
TGAACAATGATTACACACAT+TGG 0.549687 6.2:-15428655 MS.gene55425:CDS
TACAAGACAATTGATGGAAG+AGG 0.566366 6.2:-15429867 MS.gene55425:CDS
AATTCCATCACCATCTGAAA+CGG 0.566606 6.2:+15429701 None:intergenic
ACCAGATAATAGATTTAGCA+AGG 0.568377 6.2:-15428567 MS.gene55425:CDS
AACCCTACAATCAACAGCCA+AGG 0.572050 6.2:-15428605 MS.gene55425:CDS
AACTTGGGCTATTTATCATG+TGG 0.574554 6.2:-15430161 MS.gene55425:CDS
TGGACCGTTTCAGATGGTGA+TGG 0.575388 6.2:-15429705 MS.gene55425:CDS
AAGCCAGGAACATTAAGGTA+TGG 0.578760 6.2:-15429972 MS.gene55425:CDS
TTCAGGGTCTTGAACTGAAG+AGG 0.579107 6.2:+15431160 None:intergenic
CACACAAGACAAGGACATGC+AGG 0.582430 6.2:-15429517 MS.gene55425:CDS
GCTAGTGTTCACATTGCAAA+TGG 0.586396 6.2:-15429843 MS.gene55425:CDS
TGGGAAATGTATGCAATTGG+TGG 0.593671 6.2:-15428635 MS.gene55425:CDS
GATGCAGTAAATCCTAAGCC+AGG 0.596854 6.2:-15429987 MS.gene55425:CDS
CATCTTGTACAACAAGTTCA+GGG 0.601679 6.2:+15431144 None:intergenic
CACACCAGAAGTAGTAGTGA+TGG 0.602959 6.2:+15428373 None:intergenic
TTCATGATTGTGTTCCAACA+GGG 0.604224 6.2:-15429767 MS.gene55425:CDS
TTTGGAAAAGATGCAATTGG+TGG 0.625951 6.2:-15430053 MS.gene55425:CDS
ACCCTACAATCAACAGCCAA+GGG 0.631197 6.2:-15428604 MS.gene55425:CDS
TCTAGGTCTAGGAGAAACTT+GGG 0.631443 6.2:-15430176 MS.gene55425:CDS
AGAGACTCACCAGAACATAG+TGG 0.640397 6.2:-15429732 MS.gene55425:CDS
AGTGTTCACATTGCAAATGG+TGG 0.646316 6.2:-15429840 MS.gene55425:CDS
TAGCTGGAATTGGAGATCAG+AGG 0.658304 6.2:-15428504 MS.gene55425:CDS
GGGAAATGTATGCAATTGGT+GGG 0.659423 6.2:-15428634 MS.gene55425:CDS
AGTGATGGAACCAACAAGAG+AGG 0.669990 6.2:+15428388 None:intergenic
TTGTTGTACAAGATGTACAA+AGG 0.691137 6.2:-15431136 MS.gene55425:intron
GGCTTGTCCAAAGAATGCCA+AGG 0.703891 6.2:-15429464 MS.gene55425:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGCTAAAAAAAAATATTAA+AGG + chr6.2:15430168-15430187 None:intergenic 10.0%
!!! TCTTGTTTTTTTTTTTTTAA+AGG - chr6.2:15429049-15429068 MS.gene55425:intron 10.0%
!! AAACCCAAATTAAAAAAAAT+TGG - chr6.2:15430257-15430276 MS.gene55425:intron 15.0%
!! AACCCAAATTAAAAAAAATT+GGG - chr6.2:15430258-15430277 MS.gene55425:intron 15.0%
!! CAATCACAAATAAAATTATT+TGG + chr6.2:15430391-15430410 None:intergenic 15.0%
!! CTGAAAACAATAATTATTTA+TGG + chr6.2:15430869-15430888 None:intergenic 15.0%
!! GTTAATAATGTTATAATACA+TGG - chr6.2:15429772-15429791 MS.gene55425:CDS 15.0%
!! TCGTAATATATAATTAACTT+GGG + chr6.2:15429259-15429278 None:intergenic 15.0%
!! TTCGTAATATATAATTAACT+TGG + chr6.2:15429260-15429279 None:intergenic 15.0%
!!! AATATTTTTTTTTAGCATAG+TGG - chr6.2:15430170-15430189 MS.gene55425:CDS 15.0%
!!! GACATTTTTTTTATGTTTAT+GGG + chr6.2:15430558-15430577 None:intergenic 15.0%
!!! TGACATTTTTTTTATGTTTA+TGG + chr6.2:15430559-15430578 None:intergenic 15.0%
!!! TTTTGTTTTTTCTTTCTAAA+GGG + chr6.2:15428999-15429018 None:intergenic 15.0%
!!! TTTTTGTTTTTTCTTTCTAA+AGG + chr6.2:15429000-15429019 None:intergenic 15.0%
!! AAATTCAAAAAGTAGGATAA+AGG - chr6.2:15430756-15430775 MS.gene55425:intron 20.0%
!! AAGAAAAAACAAAAAGTCTT+TGG - chr6.2:15429005-15429024 MS.gene55425:intron 20.0%
!! ATAAATGTTTGAAGAGAAAA+GGG + chr6.2:15429119-15429138 None:intergenic 20.0%
!! ATGATACTACTAAGAAATTA+GGG + chr6.2:15430655-15430674 None:intergenic 20.0%
!! CCTTAAAAAATTCAAAAAGT+AGG - chr6.2:15430749-15430768 MS.gene55425:intron 20.0%
!! TATAAATGTTTGAAGAGAAA+AGG + chr6.2:15429120-15429139 None:intergenic 20.0%
!! TGTTTAATTCACAACATATT+TGG - chr6.2:15429896-15429915 MS.gene55425:CDS 20.0%
!!! AACAATAGATACAATGATTT+TGG + chr6.2:15428605-15428624 None:intergenic 20.0%
!!! ACTATTGCTTTTAATCATTT+TGG - chr6.2:15430078-15430097 MS.gene55425:CDS 20.0%
!!! ATGCCCAATTTTTTTTAATT+TGG + chr6.2:15430264-15430283 None:intergenic 20.0%
!!! ATTTTAATTTCTCTTCTTGT+AGG - chr6.2:15429359-15429378 MS.gene55425:intron 20.0%
!!! CCTACTTTTTGAATTTTTTA+AGG + chr6.2:15430752-15430771 None:intergenic 20.0%
!!! TCAATTAAAACAAGAACTTT+TGG - chr6.2:15429672-15429691 MS.gene55425:CDS 20.0%
!!! TGCCCAATTTTTTTTAATTT+GGG + chr6.2:15430263-15430282 None:intergenic 20.0%
!!! TTGAATTTTTTAAGGTAGTT+AGG + chr6.2:15430744-15430763 None:intergenic 20.0%
!!! TTTATTTTATCGTATATCAC+TGG + chr6.2:15428654-15428673 None:intergenic 20.0%
!!! TTTGTTTTTTCTTTCTAAAG+GGG + chr6.2:15428998-15429017 None:intergenic 20.0%
! AAAGAAAATCTCTCTATAGT+TGG + chr6.2:15430496-15430515 None:intergenic 25.0%
! AAGAAAATCTCTCTATAGTT+GGG + chr6.2:15430495-15430514 None:intergenic 25.0%
! AAGAGGATGAAACAAAATTT+GGG + chr6.2:15428396-15428415 None:intergenic 25.0%
! AATTCATACAAGACAATTGA+TGG - chr6.2:15429697-15429716 MS.gene55425:CDS 25.0%
! AATTTCTTAGTAGTATCATG+AGG - chr6.2:15430656-15430675 MS.gene55425:intron 25.0%
! CATGATACTACTAAGAAATT+AGG + chr6.2:15430656-15430675 None:intergenic 25.0%
! GATCATATTCAAAAGAGATA+TGG - chr6.2:15429645-15429664 MS.gene55425:CDS 25.0%
! TGAGTGTTTGAACAAATAAT+AGG + chr6.2:15430815-15430834 None:intergenic 25.0%
! TTTAATGATGTTGAATAACG+TGG - chr6.2:15430321-15430340 MS.gene55425:intron 25.0%
!! CACATTTCTTTGAATTTGTT+AGG + chr6.2:15430710-15430729 None:intergenic 25.0%
!! CTTTTGAATATGATCCATAA+TGG + chr6.2:15429640-15429659 None:intergenic 25.0%
!! GTTAGCAAAAATGTGTTTTT+GGG - chr6.2:15430212-15430231 MS.gene55425:intron 25.0%
!! TGTTAGCAAAAATGTGTTTT+TGG - chr6.2:15430211-15430230 MS.gene55425:intron 25.0%
!!! CTTTTAATCATTTTGGTGAA+GGG - chr6.2:15430085-15430104 MS.gene55425:CDS 25.0%
!!! GTTTAATAGAAGTGCATTTT+TGG - chr6.2:15428917-15428936 MS.gene55425:intron 25.0%
!!! TTAGGTCTTTACTTTGTTTT+TGG + chr6.2:15430692-15430711 None:intergenic 25.0%
ACAATGTCATGAATCATCAT+TGG + chr6.2:15428967-15428986 None:intergenic 30.0%
ACCAGATAATAGATTTAGCA+AGG - chr6.2:15431003-15431022 MS.gene55425:intron 30.0%
CAATTCAAGATGAACCATTA+TGG - chr6.2:15429623-15429642 MS.gene55425:CDS 30.0%
CAGAAAGTGAATATAATAGC+TGG - chr6.2:15431050-15431069 MS.gene55425:intron 30.0%
GAACAATGATTACACACATT+GGG - chr6.2:15430916-15430935 MS.gene55425:intron 30.0%
GAAGAGGATGAAACAAAATT+TGG + chr6.2:15428397-15428416 None:intergenic 30.0%
GCTTATTGCATAAAAGTTTG+TGG - chr6.2:15428559-15428578 MS.gene55425:CDS 30.0%
GGGAGTAAAAATATTTGCTT+AGG - chr6.2:15430232-15430251 MS.gene55425:intron 30.0%
GTGAATATAATAGCTGGAAT+TGG - chr6.2:15431056-15431075 MS.gene55425:intron 30.0%
TCCTTGCTAAATCTATTATC+TGG + chr6.2:15431007-15431026 None:intergenic 30.0%
TGAACAATGATTACACACAT+TGG - chr6.2:15430915-15430934 MS.gene55425:intron 30.0%
TGTCATATATATGCATACCT+TGG + chr6.2:15430126-15430145 None:intergenic 30.0%
TGTGTAAGATCAACTTCTTT+AGG - chr6.2:15430415-15430434 MS.gene55425:intron 30.0%
TTGTTGTACAAGATGTACAA+AGG - chr6.2:15428434-15428453 MS.gene55425:CDS 30.0%
TTTAATTCTCCATACACTGA+CGG - chr6.2:15429175-15429194 MS.gene55425:intron 30.0%
! ATTGTTTTCAGATGTAGACA+TGG - chr6.2:15430878-15430897 MS.gene55425:intron 30.0%
! CATGACAAAGTTATGCTTTT+GGG - chr6.2:15430015-15430034 MS.gene55425:CDS 30.0%
! GCTATTATGAGAGATTTTGA+AGG + chr6.2:15430612-15430631 None:intergenic 30.0%
! TCATGACAAAGTTATGCTTT+TGG - chr6.2:15430014-15430033 MS.gene55425:CDS 30.0%
! TGATTTTTACACACAAGACA+AGG - chr6.2:15430044-15430063 MS.gene55425:CDS 30.0%
!! GCTTTTAATCATTTTGGTGA+AGG - chr6.2:15430084-15430103 MS.gene55425:CDS 30.0%
!! TAGACATGGTTATTTTCATG+TGG - chr6.2:15430892-15430911 MS.gene55425:intron 30.0%
AACTTGGGCTATTTATCATG+TGG - chr6.2:15429409-15429428 MS.gene55425:intron 35.0%
AAGAACGAGAAAGCAAGAAA+AGG + chr6.2:15428353-15428372 None:intergenic 35.0%
AATTCCATCACCATCTGAAA+CGG + chr6.2:15429872-15429891 None:intergenic 35.0%
ACATCTTGTACAACAAGTTC+AGG + chr6.2:15428430-15428449 None:intergenic 35.0%
CATCTCCAACAATCATCAAT+TGG + chr6.2:15429445-15429464 None:intergenic 35.0%
CATCTTGTACAACAAGTTCA+GGG + chr6.2:15428429-15428448 None:intergenic 35.0%
CATGAATCATCATTGGATGT+CGG + chr6.2:15428960-15428979 None:intergenic 35.0%
CATTGGATGTCGGTATAAAA+TGG + chr6.2:15428950-15428969 None:intergenic 35.0%
CATTGGGAAATGTATGCAAT+TGG - chr6.2:15430932-15430951 MS.gene55425:intron 35.0%
CTAATATTTGTGTTCCCTGT+TGG + chr6.2:15429820-15429839 None:intergenic 35.0%
CTCTCTATAGTTGGGAATAT+GGG + chr6.2:15430487-15430506 None:intergenic 35.0%
GGATTTGGAAAAGATGCAAT+TGG - chr6.2:15429514-15429533 MS.gene55425:CDS 35.0%
TACAAGACAATTGATGGAAG+AGG - chr6.2:15429703-15429722 MS.gene55425:CDS 35.0%
TCTCTATAGTTGGGAATATG+GGG + chr6.2:15430486-15430505 None:intergenic 35.0%
TCTCTCTATAGTTGGGAATA+TGG + chr6.2:15430488-15430507 None:intergenic 35.0%
TCTTTGTCTAATTGTCGTGA+TGG - chr6.2:15429931-15429950 MS.gene55425:CDS 35.0%
TTCATGATTGTGTTCCAACA+GGG - chr6.2:15429803-15429822 MS.gene55425:CDS 35.0%
TTTGGAAAAGATGCAATTGG+TGG - chr6.2:15429517-15429536 MS.gene55425:CDS 35.0%
! GATGCAATTGGTGGTAAAAA+TGG - chr6.2:15429526-15429545 MS.gene55425:CDS 35.0%
! GCAATCCAATTGATGATTGT+TGG - chr6.2:15429437-15429456 MS.gene55425:intron 35.0%
! GGAGAGAGAATTTTCTATCA+CGG - chr6.2:15430436-15430455 MS.gene55425:intron 35.0%
!! ATCTACATTGTCACTGATTC+AGG - chr6.2:15429553-15429572 MS.gene55425:CDS 35.0%
!! GGTCTTATTGACGTTATTCA+TGG - chr6.2:15429952-15429971 MS.gene55425:CDS 35.0%
AAGCCAGGAACATTAAGGTA+TGG - chr6.2:15429598-15429617 MS.gene55425:CDS 40.0%
AATTGTACACCGTCAGTGTA+TGG + chr6.2:15429187-15429206 None:intergenic 40.0%
AGTGTTCACATTGCAAATGG+TGG - chr6.2:15429730-15429749 MS.gene55425:CDS 40.0%
ATCCTAAGCCAGGAACATTA+AGG - chr6.2:15429593-15429612 MS.gene55425:CDS 40.0%
ATGCATACCTTGGCATTCTT+TGG + chr6.2:15430116-15430135 None:intergenic 40.0%
GCTAGTGTTCACATTGCAAA+TGG - chr6.2:15429727-15429746 MS.gene55425:CDS 40.0%
GCTGATTGTGCAATTGGATT+TGG - chr6.2:15429499-15429518 MS.gene55425:CDS 40.0%
GGCTATTTATCATGTGGAAC+TGG - chr6.2:15429415-15429434 MS.gene55425:intron 40.0%
GGGAAATGTATGCAATTGGT+GGG - chr6.2:15430936-15430955 MS.gene55425:intron 40.0%
GGGGTTATCTACATAGAGAT+GGG + chr6.2:15430524-15430543 None:intergenic 40.0%
GTCCAAAATCCACTATGTTC+TGG + chr6.2:15429850-15429869 None:intergenic 40.0%
GTTCATGATTGTGTTCCAAC+AGG - chr6.2:15429802-15429821 MS.gene55425:CDS 40.0%
TACCTTAATGTTCCTGGCTT+AGG + chr6.2:15429598-15429617 None:intergenic 40.0%
TCTAGGTCTAGGAGAAACTT+GGG - chr6.2:15429394-15429413 MS.gene55425:intron 40.0%
TGGGAAATGTATGCAATTGG+TGG - chr6.2:15430935-15430954 MS.gene55425:intron 40.0%
TTGGAGATGTGACCCAAATT+GGG - chr6.2:15429456-15429475 MS.gene55425:intron 40.0%
! AGACTAGCTGATTGTGCAAT+TGG - chr6.2:15429493-15429512 MS.gene55425:CDS 40.0%
! GGAGCATTCTTTAGACAAAC+TGG - chr6.2:15431106-15431125 MS.gene55425:intron 40.0%
!! CACAATCAGCTAGTCTTTGT+CGG + chr6.2:15429489-15429508 None:intergenic 40.0%
!! GAGGGTGATTTGTTCTTGAA+TGG - chr6.2:15431085-15431104 MS.gene55425:intron 40.0%
!! GTCGGTTGTTTTCCCAATTT+GGG + chr6.2:15429471-15429490 None:intergenic 40.0%
!! TGTCGGTTGTTTTCCCAATT+TGG + chr6.2:15429472-15429491 None:intergenic 40.0%
!!! CACCAGAACATAGTGGATTT+TGG - chr6.2:15429845-15429864 MS.gene55425:CDS 40.0%
AACCCTACAATCAACAGCCA+AGG - chr6.2:15430965-15430984 MS.gene55425:intron 45.0%
ACCCTACAATCAACAGCCAA+GGG - chr6.2:15430966-15430985 MS.gene55425:intron 45.0%
AGAGACTCACCAGAACATAG+TGG - chr6.2:15429838-15429857 MS.gene55425:CDS 45.0%
AGCTGGAATTGGAGATCAGA+GGG - chr6.2:15431067-15431086 MS.gene55425:intron 45.0%
ATGTAGATAACCCCGCAAGT+GGG - chr6.2:15430530-15430549 MS.gene55425:intron 45.0%
CACACCAGAAGTAGTAGTGA+TGG + chr6.2:15431200-15431219 None:intergenic 45.0%
CGGGGTTATCTACATAGAGA+TGG + chr6.2:15430525-15430544 None:intergenic 45.0%
CTCTAGGTCTAGGAGAAACT+TGG - chr6.2:15429393-15429412 MS.gene55425:intron 45.0%
GATGCAGTAAATCCTAAGCC+AGG - chr6.2:15429583-15429602 MS.gene55425:CDS 45.0%
GCACCATACCTTAATGTTCC+TGG + chr6.2:15429604-15429623 None:intergenic 45.0%
GCATCAATGTCTCTAGGTCT+AGG - chr6.2:15429383-15429402 MS.gene55425:intron 45.0%
GGTTCCATCACTACTACTTC+TGG - chr6.2:15431193-15431212 MS.gene55425:CDS 45.0%
GTGCAAGAAATCTGTTCCCT+TGG + chr6.2:15430985-15431004 None:intergenic 45.0%
GTTGGAGATGTGACCCAAAT+TGG - chr6.2:15429455-15429474 MS.gene55425:intron 45.0%
TAGCTGGAATTGGAGATCAG+AGG - chr6.2:15431066-15431085 MS.gene55425:intron 45.0%
TATGTAGATAACCCCGCAAG+TGG - chr6.2:15430529-15430548 MS.gene55425:intron 45.0%
TGCACTAAGACTTGAAGCTC+TGG + chr6.2:15431155-15431174 None:intergenic 45.0%
TGTTTATGGGTTCCCACTTG+CGG + chr6.2:15430545-15430564 None:intergenic 45.0%
TTCAGGGTCTTGAACTGAAG+AGG + chr6.2:15428413-15428432 None:intergenic 45.0%
! AGTGATGGAACCAACAAGAG+AGG + chr6.2:15431185-15431204 None:intergenic 45.0%
! GGATTTTGGACCGTTTCAGA+TGG - chr6.2:15429859-15429878 MS.gene55425:CDS 45.0%
! TCCCTTGGCTGTTGATTGTA+GGG + chr6.2:15430970-15430989 None:intergenic 45.0%
! TTCCCTTGGCTGTTGATTGT+AGG + chr6.2:15430971-15430990 None:intergenic 45.0%
!! GTAGGAGCATCAATGTCTCT+AGG - chr6.2:15429377-15429396 MS.gene55425:intron 45.0%
ATGGAACCAACAAGAGAGGC+TGG + chr6.2:15431181-15431200 None:intergenic 50.0%
CACACAAGACAAGGACATGC+AGG - chr6.2:15430053-15430072 MS.gene55425:CDS 50.0%
GGCTTGTCCAAAGAATGCCA+AGG - chr6.2:15430106-15430125 MS.gene55425:CDS 50.0%
GGTGTGCTCACTTGCAAGAA+GGG - chr6.2:15431214-15431233 MS.gene55425:CDS 50.0%
GTTTATGGGTTCCCACTTGC+GGG + chr6.2:15430544-15430563 None:intergenic 50.0%
TGGACCGTTTCAGATGGTGA+TGG - chr6.2:15429865-15429884 MS.gene55425:CDS 50.0%
TGGTGTGCTCACTTGCAAGA+AGG - chr6.2:15431213-15431232 MS.gene55425:CDS 50.0%
TTTATGGGTTCCCACTTGCG+GGG + chr6.2:15430543-15430562 None:intergenic 50.0%
GCAAGACCAGCCTCTCTTGT+TGG - chr6.2:15431172-15431191 MS.gene55425:CDS 55.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 15428343 15431249 15428343 ID=MS.gene55425
chr6.2 mRNA 15428343 15431249 15428343 ID=MS.gene55425.t1;Parent=MS.gene55425
chr6.2 exon 15431137 15431249 15431137 ID=MS.gene55425.t1.exon1;Parent=MS.gene55425.t1
chr6.2 CDS 15431137 15431249 15431137 ID=cds.MS.gene55425.t1;Parent=MS.gene55425.t1
chr6.2 exon 15429465 15430211 15429465 ID=MS.gene55425.t1.exon2;Parent=MS.gene55425.t1
chr6.2 CDS 15429465 15430211 15429465 ID=cds.MS.gene55425.t1;Parent=MS.gene55425.t1
chr6.2 exon 15428343 15428703 15428343 ID=MS.gene55425.t1.exon3;Parent=MS.gene55425.t1
chr6.2 CDS 15428343 15428703 15428343 ID=cds.MS.gene55425.t1;Parent=MS.gene55425.t1
Gene Sequence

>MS.gene55425

ATGACTTCCTTTTCTTGCTTTCTCGTTCTTTATGCTCTTTCTCTTCTAATCCCAAATTTTGTTTCATCCTCTTCAGTTCAAGACCCTGAACTTGTTGTACAAGATGTACAAAGGTAATAACATTTTTTATGTATTATTTATATTATGTTGTGTTATGTGTACTCACTCTTGCTACATTGTTCATTTCATGAGTATTTCGATCAATAATTTCATTAAGCTTATTGCATAAAAGTTTGTGGATTTGATTCATATGTAATGTCCAAAATCATTGTATCTATTGTTAGCATAAAATATGTTTACATATGCATCCAGTGATATACGATAAAATAAATATTTTATGCATCTAACATAACAAAGTGATATCAGTAGTTTGTTTGAATGCATGTGTACTTTTTTTTACACTATCAATTCATAACAATTAATCTCAAAGTTTTTTTTTTTTGAGAGAATTAATCTGAAAGCTCATATATGTGTTATTTCTACATTTCATTATAAAATTAAAATATCTCAAAATATCTCAAAATCAGTTTATGAAAATGTTGTGAGTTATTTTTATAAATTCTTCTAAGCATGAGTTTAATAGAAGTGCATTTTTGGCGTAAGACCATTTTATACCGACATCCAATGATGATTCATGACATTGTCATATAAACCCCTTTAGAAAGAAAAAACAAAAAGTCTTTGGCTTGTTAAAAAAAATTCAAGTTCTTGTTTTTTTTTTTTTAAAGGTCAAGTTCTTGTTTTTAATCAGTTGTTAGTGTAAAACTAGTTATCCCTTTTCTCTTCAAACATTTATATGTAAATACTTGTGTCATATAATAACTTCAAAGAGTTTAATTCTCCATACACTGACGGTGTACAATTATTTTACATATCAATGTCTTGTTACATTAACTAATGACGTCAACTTCAACCCAAGTTAATTATATATTACGAAGTATATATAAATATTATGAAAACAAACTAAATTTTAATATAATAATTGTATGATTTGACTTAATTAGTTAAATTAATTAATTTTAATTTCTCTTCTTGTAGGAGCATCAATGTCTCTAGGTCTAGGAGAAACTTGGGCTATTTATCATGTGGAACTGGCAATCCAATTGATGATTGTTGGAGATGTGACCCAAATTGGGAAAACAACCGACAAAGACTAGCTGATTGTGCAATTGGATTTGGAAAAGATGCAATTGGTGGTAAAAATGGTAAAATCTACATTGTCACTGATTCAGGTGATGATGATGCAGTAAATCCTAAGCCAGGAACATTAAGGTATGGTGCAATTCAAGATGAACCATTATGGATCATATTCAAAAGAGATATGGTAATTCAATTAAAACAAGAACTTTTGGTAAATTCATACAAGACAATTGATGGAAGAGGTGCTAGTGTTCACATTGCAAATGGTGGATGTATTACAATACATTATGTTAATAATGTTATAATACATGGTATTCATGTTCATGATTGTGTTCCAACAGGGAACACAAATATTAGAGACTCACCAGAACATAGTGGATTTTGGACCGTTTCAGATGGTGATGGAATTTCAGTGTTTAATTCACAACATATTTGGATTGATCATTGTTCTTTGTCTAATTGTCGTGATGGTCTTATTGACGTTATTCATGGATCTAATGCTATTACAATTTCAAATAACTATATGACTCATCATGACAAAGTTATGCTTTTGGGACATAGTGATTTTTACACACAAGACAAGGACATGCAGGTCACTATTGCTTTTAATCATTTTGGTGAAGGGCTTGTCCAAAGAATGCCAAGGTATGCATATATATGACACTAAAATTTCACTTTTTTTCCTTTAATATTTTTTTTTAGCATAGTGGTAAAAAAAAGTCATGCATTGTTAGCAAAAATGTGTTTTTGGGAGTAAAAATATTTGCTTAGGACAAACCCAAATTAAAAAAAATTGGGCATGCTCACACATATATTTTGTTTTTAAAAGAGAAACTGATTTAATGATGTTGAATAACGTGGCTAATTTATTTATGTATTAATTTCTTTTATTATTATGTGTGCGTCCAAATAATTTTATTTGTGATTGCGTTTGTGTAAGATCAACTTCTTTAGGAGAGAGAATTTTCTATCACGGCGTCTCAAAATGTCGATCGATATGCCCCATATTCCCAACTATAGAGAGATTTTCTTTTATGTCCCATCTCTATGTAGATAACCCCGCAAGTGGGAACCCATAAACATAAAAAAAATGTCAACTTTTTTATTGAAAATTGTCATTTTCTAACCTTCAAAATCTCTCATAATAGCAAATGTCATATTAATGTAAACCCTAATTTCTTAGTAGTATCATGAGGCTCGATTGAACCAAAAACAAAGTAAAGACCTAACAAATTCAAAGAAATGTGCGTATATGATACCTAACTACCTTAAAAAATTCAAAAAGTAGGATAAAGGTTAGTTGTGACTTTTTGATTGAGTTATCTATTGCCTATTATTTGTTCAAACACTCACATGAATACATATAAGCATGAAAATATATAACCATAAATAATTATTGTTTTCAGATGTAGACATGGTTATTTTCATGTGGTGAACAATGATTACACACATTGGGAAATGTATGCAATTGGTGGGAGTGCTAACCCTACAATCAACAGCCAAGGGAACAGATTTCTTGCACCAGATAATAGATTTAGCAAGGAAGTAACAAAGCATGAAGATGCATCAGAAAGTGAATATAATAGCTGGAATTGGAGATCAGAGGGTGATTTGTTCTTGAATGGAGCATTCTTTAGACAAACTGGTGCTGAATCTTCTTCAATCTATGCCAGAGCTTCAAGTCTTAGTGCAAGACCAGCCTCTCTTGTTGGTTCCATCACTACTACTTCTGGTGTGCTCACTTGCAAGAAGGGCAACCGTTGCTAA
Protein sequence

>MS.gene55425.t1

MTSFSCFLVLYALSLLIPNFVSSSSVQDPELVVQDVQRSINVSRSRRNLGYLSCGTGNPIDDCWRCDPNWENNRQRLADCAIGFGKDAIGGKNGKIYIVTDSGDDDAVNPKPGTLRYGAIQDEPLWIIFKRDMVIQLKQELLVNSYKTIDGRGASVHIANGGCITIHYVNNVIIHGIHVHDCVPTGNTNIRDSPEHSGFWTVSDGDGISVFNSQHIWIDHCSLSNCRDGLIDVIHGSNAITISNNYMTHHDKVMLLGHSDFYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDNRFSKEVTKHEDASESEYNSWNWRSEGDLFLNGAFFRQTGAESSSIYARASSLSARPASLVGSITTTSGVLTCKKGNRC