AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052265

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052265.t1 MTR_4g075280 97.895 190 4 0 1 190 1 190 2.78e-136 379
MS.gene052265.t1 MTR_3g109700 45.865 133 68 3 60 190 63 193 8.03e-34 119
MS.gene052265.t1 MTR_3g109700 44.444 108 57 2 57 163 60 165 8.83e-26 97.8
MS.gene052265.t1 MTR_3g109700 44.860 107 56 2 57 162 60 164 2.37e-25 97.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052265.t1 AT5G16870 69.474 190 37 4 1 190 1 169 4.99e-86 251
MS.gene052265.t1 AT3G03010 69.318 176 41 2 17 190 15 179 5.75e-80 236
MS.gene052265.t1 AT3G03010 69.318 176 41 2 17 190 15 179 5.75e-80 236
MS.gene052265.t1 AT3G03010 69.318 176 41 2 17 190 15 179 5.75e-80 236
MS.gene052265.t1 AT3G03010 61.719 128 36 2 17 142 15 131 1.68e-45 147
MS.gene052265.t1 AT3G03010 61.719 128 36 2 17 142 15 131 1.68e-45 147
MS.gene052265.t1 AT4G32900 48.718 117 59 1 75 190 77 193 6.02e-34 119
MS.gene052265.t1 AT4G32900 45.556 90 49 0 75 164 77 166 2.06e-24 94.4
MS.gene052265.t1 AT4G32900 45.556 90 49 0 75 164 77 166 2.06e-24 94.4
MS.gene052265.t1 AT4G32900 46.875 64 34 0 75 138 77 140 4.23e-16 72.0

Find 30 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAAGTTGGTCTTTGATTT+TGG 0.042547 4.2:-33536229 None:intergenic
TGTTAGAAATGATCTTAAAA+TGG 0.178309 4.2:+33536385 MS.gene052265:CDS
CTTGCTTTGGGTTACTTCAT+TGG 0.226259 4.2:+33536099 MS.gene052265:CDS
GTCATGGTTGAGTGCAATTT+TGG 0.265900 4.2:+33536062 MS.gene052265:CDS
TGGTGCTGGTTATCTTGCTT+TGG 0.338108 4.2:+33536086 MS.gene052265:CDS
GGTGCTGGTTATCTTGCTTT+GGG 0.344764 4.2:+33536087 MS.gene052265:CDS
AACATTGGGTCTCTACAAAA+AGG 0.347125 4.2:+33536965 MS.gene052265:CDS
CATTACCTATTTAAAGCCTT+TGG 0.351201 4.2:-33537002 None:intergenic
GAGAATTGCCATCACCGTTC+TGG 0.354128 4.2:-33539132 None:intergenic
GAGCTCCAAAGGCTTTAAAT+AGG 0.364463 4.2:+33536997 MS.gene052265:CDS
GTTAGAAATGATCTTAAAAT+GGG 0.382687 4.2:+33536386 MS.gene052265:CDS
ACCTCATCTACCACTTCAAC+AGG 0.458269 4.2:-33539270 None:intergenic
TATTTAAAGCCTTTGGAGCT+CGG 0.471485 4.2:-33536995 None:intergenic
AATGATCTTAAAATGGGTAA+AGG 0.501457 4.2:+33536392 MS.gene052265:CDS
AGAACGGTGATGGCAATTCT+CGG 0.504068 4.2:+33539134 MS.gene052265:CDS
GAAAGATTGCAGCTCAATGC+AGG 0.516623 4.2:+33536414 MS.gene052265:CDS
GGAGATGTCTGCACAGCCTA+AGG 0.521064 4.2:+33537108 MS.gene052265:CDS
TGAAAGTGAAGAAGATATGC+TGG 0.522958 4.2:+33537144 MS.gene052265:CDS
TCTAGATTCCAGAACGGTGA+TGG 0.534748 4.2:+33539124 MS.gene052265:intron
ACTCATATCACAATTGATGC+TGG 0.549551 4.2:+33538543 MS.gene052265:CDS
GGTTCTTTACCGAGCTCCAA+AGG 0.550602 4.2:+33536986 MS.gene052265:CDS
GCATCAATTGTGATATGAGT+AGG 0.570579 4.2:-33538540 None:intergenic
GAAGTGGTAGATGAGGTAAC+AGG 0.582781 4.2:+33539276 MS.gene052265:CDS
CAAGCTGTTCAACCTCAAGT+TGG 0.585211 4.2:-33536242 None:intergenic
ACCTGTTGAAGTGGTAGATG+AGG 0.590585 4.2:+33539269 MS.gene052265:CDS
ATGTGCAGGACCTGTTGAAG+TGG 0.631821 4.2:+33539260 MS.gene052265:intron
GTTTCTTCTAGATTCCAGAA+CGG 0.652178 4.2:+33539118 MS.gene052265:intron
GTGGTAGATGAGGTAACAGG+TGG 0.666083 4.2:+33539279 MS.gene052265:CDS
TGATTGAAATGGAAATGTCA+TGG 0.672695 4.2:+33536046 None:intergenic
CAAAATCAAAGACCAACTTG+AGG 0.704651 4.2:+33536230 MS.gene052265:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATCCTTTTAATTTATT+AGG + chr4.2:33537784-33537803 MS.gene052265:intron 10.0%
!!! TAAATATTGTTTGATTTTTA+GGG + chr4.2:33537176-33537195 MS.gene052265:intron 10.0%
!! ATCCAGAAAAAAAATATAAA+CGG + chr4.2:33536900-33536919 MS.gene052265:intron 15.0%
!! ATTAATCAAATGATATCATT+AGG + chr4.2:33537815-33537834 MS.gene052265:intron 15.0%
!! TTAATCAATGAAAGTAAAAA+GGG + chr4.2:33537474-33537493 MS.gene052265:intron 15.0%
!! TTATTATTCTAATAACACTA+TGG + chr4.2:33538047-33538066 MS.gene052265:intron 15.0%
!! TTGACAAGAAAAAATATAAA+TGG - chr4.2:33539184-33539203 None:intergenic 15.0%
!! TTTAATCAATGAAAGTAAAA+AGG + chr4.2:33537473-33537492 MS.gene052265:intron 15.0%
!!! AATTACTAGCTTTATTTTAA+TGG + chr4.2:33536324-33536343 MS.gene052265:intron 15.0%
!!! AGGATATTTTTCTTTTAATT+TGG - chr4.2:33537773-33537792 None:intergenic 15.0%
!!! ATTACTAGCTTTATTTTAAT+GGG + chr4.2:33536325-33536344 MS.gene052265:intron 15.0%
!!! GTAAATATTGTTTGATTTTT+AGG + chr4.2:33537175-33537194 MS.gene052265:intron 15.0%
!!! TTTTTTTTAATGCTACTATA+AGG - chr4.2:33538684-33538703 None:intergenic 15.0%
!! AAAGAGAACATAGTTAATAT+TGG - chr4.2:33537211-33537230 None:intergenic 20.0%
!! AATCAATTAACAAGAAGATA+AGG - chr4.2:33538607-33538626 None:intergenic 20.0%
!! ACTTAAATATCTCCAAAATT+AGG + chr4.2:33538387-33538406 MS.gene052265:intron 20.0%
!! ATCAATTAACAAGAAGATAA+GGG - chr4.2:33538606-33538625 None:intergenic 20.0%
!! CTAAGCAATAATAATCTATT+TGG - chr4.2:33536756-33536775 None:intergenic 20.0%
!! GTTAGAAATGATCTTAAAAT+GGG + chr4.2:33536386-33536405 MS.gene052265:CDS 20.0%
!! TCAAATATGTCAATCTAATT+AGG + chr4.2:33536699-33536718 MS.gene052265:intron 20.0%
!! TGTTAGAAATGATCTTAAAA+TGG + chr4.2:33536385-33536404 MS.gene052265:CDS 20.0%
!! TTATATTCAAAGTTGAAACT+TGG + chr4.2:33537548-33537567 MS.gene052265:intron 20.0%
!! TTTCAGCCTAATAAATTAAA+AGG - chr4.2:33537793-33537812 None:intergenic 20.0%
!!! AAAAAAGTATAGCATAAACA+AGG + chr4.2:33538205-33538224 MS.gene052265:intron 20.0%
!!! AACGTCTTTTATTATTGTAA+AGG + chr4.2:33538101-33538120 MS.gene052265:intron 20.0%
!!! TTTACTTTCATTGATTAAAC+AGG - chr4.2:33537472-33537491 None:intergenic 20.0%
!!! TTTATTTTCTATTTTTCTCC+TGG - chr4.2:33537373-33537392 None:intergenic 20.0%
! AAACTTCAATGTATAAGATG+AGG - chr4.2:33538856-33538875 None:intergenic 25.0%
! AATGATCTTAAAATGGGTAA+AGG + chr4.2:33536392-33536411 MS.gene052265:CDS 25.0%
! AATGTATAAGATGAGGATAA+TGG - chr4.2:33538849-33538868 None:intergenic 25.0%
! ACAACAAGTATCTACAAAAA+AGG - chr4.2:33536368-33536387 None:intergenic 25.0%
! ACACCAAATAAACACTATTA+TGG + chr4.2:33537300-33537319 MS.gene052265:intron 25.0%
! AGGTAAAATTTCCAATTATG+TGG - chr4.2:33538645-33538664 None:intergenic 25.0%
! ATAAATGGTCATTCTATTAG+AGG - chr4.2:33539169-33539188 None:intergenic 25.0%
! ATATCATTAGGATTATGTCT+AGG + chr4.2:33537827-33537846 MS.gene052265:intron 25.0%
! ATGCAAATTGTCATGTATAT+TGG + chr4.2:33538724-33538743 MS.gene052265:intron 25.0%
! ATTTCAGATCTAATTGTACA+TGG - chr4.2:33538781-33538800 None:intergenic 25.0%
! CAACCATAATAGTGTTTATT+TGG - chr4.2:33537306-33537325 None:intergenic 25.0%
! CAACGAAAAAACAAAAGAAA+AGG - chr4.2:33539017-33539036 None:intergenic 25.0%
! CTTTAAATAGGTAATGTCAT+TGG + chr4.2:33537009-33537028 MS.gene052265:intron 25.0%
! GCAATAATAATCTATTTGGA+AGG - chr4.2:33536752-33536771 None:intergenic 25.0%
! TTTGTATCTGTATGATATGA+AGG + chr4.2:33539048-33539067 MS.gene052265:intron 25.0%
!! AACATGAAAGAACCTAATTT+TGG - chr4.2:33538402-33538421 None:intergenic 25.0%
!! AATGAGTTGAAAACAGTTTA+TGG + chr4.2:33536607-33536626 MS.gene052265:intron 25.0%
!! AGGCAAAAAATAGTAGATTT+TGG + chr4.2:33537414-33537433 MS.gene052265:intron 25.0%
!! AGGGATGTATATTTCATTTT+AGG - chr4.2:33538826-33538845 None:intergenic 25.0%
!! ATAAGCTCAGTTAGATATTT+TGG + chr4.2:33538143-33538162 MS.gene052265:intron 25.0%
!! GGATGTATATTTCATTTTAG+GGG - chr4.2:33538824-33538843 None:intergenic 25.0%
!! GGGATGTATATTTCATTTTA+GGG - chr4.2:33538825-33538844 None:intergenic 25.0%
!! TACAAAAGCTATCTTTAGAA+AGG - chr4.2:33538468-33538487 None:intergenic 25.0%
!!! GACCGTTTATATTTTTTTTC+TGG - chr4.2:33536905-33536924 None:intergenic 25.0%
!!! TATTCTCGAAGATTTTAAGA+TGG + chr4.2:33536269-33536288 MS.gene052265:CDS 25.0%
AAAATAGTCCAACCTATTAG+AGG - chr4.2:33538263-33538282 None:intergenic 30.0%
AAATTGTCATGTATATTGGC+TGG + chr4.2:33538728-33538747 MS.gene052265:intron 30.0%
AAGCACTTACGATATTTGTT+TGG - chr4.2:33536663-33536682 None:intergenic 30.0%
ACTAACACTGCAATCATATT+AGG + chr4.2:33537590-33537609 MS.gene052265:intron 30.0%
AGCACTTACGATATTTGTTT+GGG - chr4.2:33536662-33536681 None:intergenic 30.0%
ATACGTAGCAGTGTATAATT+TGG + chr4.2:33537675-33537694 MS.gene052265:intron 30.0%
ATACTTGTAGAAACTGTCTA+AGG + chr4.2:33537446-33537465 MS.gene052265:intron 30.0%
ATTTAAGTGAACTATGGAAG+AGG - chr4.2:33538375-33538394 None:intergenic 30.0%
CTATATGCAATGAAAAGCAA+GGG + chr4.2:33537925-33537944 MS.gene052265:intron 30.0%
CTGTTTCAAAAGAAATGTTG+TGG + chr4.2:33537621-33537640 MS.gene052265:intron 30.0%
GGAGATATTTAAGTGAACTA+TGG - chr4.2:33538381-33538400 None:intergenic 30.0%
TACGTAGCAGTGTATAATTT+GGG + chr4.2:33537676-33537695 MS.gene052265:intron 30.0%
TGTAATGTTCTCCACATAAT+TGG + chr4.2:33538631-33538650 MS.gene052265:intron 30.0%
TTATTGTAAAGGAACTCTTG+TGG + chr4.2:33538112-33538131 MS.gene052265:intron 30.0%
TTCTGGATTAAAAACAGAAC+AGG - chr4.2:33536888-33536907 None:intergenic 30.0%
! AATTGTCATGTATATTGGCT+GGG + chr4.2:33538729-33538748 MS.gene052265:intron 30.0%
! ATCCTTTTGACATTTGAACT+AGG + chr4.2:33537394-33537413 MS.gene052265:intron 30.0%
! ATTTTGTAGTCATGCAACAT+TGG + chr4.2:33536950-33536969 MS.gene052265:intron 30.0%
! CATTACCTATTTAAAGCCTT+TGG - chr4.2:33537005-33537024 None:intergenic 30.0%
! CTCATTTTCATTACTTATCC+AGG - chr4.2:33536593-33536612 None:intergenic 30.0%
! GGTGTTAATTTGATCTTGTT+TGG + chr4.2:33536452-33536471 MS.gene052265:intron 30.0%
! TTTTGTAGTCATGCAACATT+GGG + chr4.2:33536951-33536970 MS.gene052265:intron 30.0%
!! AACACTATTATGGTTGCTTT+TGG + chr4.2:33537310-33537329 MS.gene052265:intron 30.0%
!! TATAAGATGAGGATAATGGA+GGG - chr4.2:33538845-33538864 None:intergenic 30.0%
!! TCAATTTTGACAACAACCTT+AGG - chr4.2:33537127-33537146 None:intergenic 30.0%
!! TTGGGCTTTAAACAATGATT+GGG + chr4.2:33537694-33537713 MS.gene052265:intron 30.0%
!! TTTGGGCTTTAAACAATGAT+TGG + chr4.2:33537693-33537712 MS.gene052265:intron 30.0%
!!! CACAGTTTTAGACAATACAA+AGG - chr4.2:33538942-33538961 None:intergenic 30.0%
!!! TAGATATTTTGGTAATCTGC+CGG + chr4.2:33538154-33538173 MS.gene052265:intron 30.0%
!!! TCAAGTTGGTCTTTGATTTT+GGG - chr4.2:33536231-33536250 None:intergenic 30.0%
AACATTGGGTCTCTACAAAA+AGG + chr4.2:33536965-33536984 MS.gene052265:CDS 35.0%
AAGGCAGTAAAATAACACAC+AGG - chr4.2:33538665-33538684 None:intergenic 35.0%
ACATATTTGAGCTTACCTAC+AGG - chr4.2:33536689-33536708 None:intergenic 35.0%
ACTCATATCACAATTGATGC+TGG + chr4.2:33538543-33538562 MS.gene052265:CDS 35.0%
ATACTGTCAGAACCTCTAAT+AGG + chr4.2:33538248-33538267 MS.gene052265:intron 35.0%
CAAAATCAAAGACCAACTTG+AGG + chr4.2:33536230-33536249 MS.gene052265:CDS 35.0%
CAATGCAAGACATGAAACTT+AGG + chr4.2:33537511-33537530 MS.gene052265:intron 35.0%
CTTTAAACAATGATTGGGCA+GGG + chr4.2:33537699-33537718 MS.gene052265:intron 35.0%
GCATCAATTGTGATATGAGT+AGG - chr4.2:33538543-33538562 None:intergenic 35.0%
GCTATATGCAATGAAAAGCA+AGG + chr4.2:33537924-33537943 MS.gene052265:intron 35.0%
GTTTCTTCTAGATTCCAGAA+CGG + chr4.2:33539118-33539137 MS.gene052265:intron 35.0%
TATTTGTTTGGGAGAGCTTA+TGG - chr4.2:33536651-33536670 None:intergenic 35.0%
TGAAAGTGAAGAAGATATGC+TGG + chr4.2:33537144-33537163 MS.gene052265:CDS 35.0%
TGCAGGTATGTAATCTTTGT+TGG + chr4.2:33536431-33536450 MS.gene052265:intron 35.0%
TGCCTAGTTCAAATGTCAAA+AGG - chr4.2:33537399-33537418 None:intergenic 35.0%
TGTTGTTCTATAAGCTATCC+TGG + chr4.2:33536572-33536591 MS.gene052265:intron 35.0%
TTAACATGATGTTCATGTGC+AGG + chr4.2:33539246-33539265 MS.gene052265:intron 35.0%
TTGTTTGGATAAGCACTCAA+TGG + chr4.2:33536467-33536486 MS.gene052265:intron 35.0%
! ACAAGAACAGTTCGTCTTTT+AGG - chr4.2:33537984-33538003 None:intergenic 35.0%
! CAAGAACAGTTCGTCTTTTA+GGG - chr4.2:33537983-33538002 None:intergenic 35.0%
! GTATAAGATGAGGATAATGG+AGG - chr4.2:33538846-33538865 None:intergenic 35.0%
! TTTTCTTCAGAAAGCAAGCA+TGG - chr4.2:33538902-33538921 None:intergenic 35.0%
!! ATACTGTCTTTTGCTGTGTT+AGG + chr4.2:33538494-33538513 MS.gene052265:intron 35.0%
!! GTTTTTCAATGTCAATGTGC+AGG + chr4.2:33537083-33537102 MS.gene052265:intron 35.0%
!! TATTTAAAGCCTTTGGAGCT+CGG - chr4.2:33536998-33537017 None:intergenic 35.0%
!! TCTTTTGCTGTGTTAGGAAA+GGG + chr4.2:33538500-33538519 MS.gene052265:intron 35.0%
!!! ACTATTATGGTTGCTTTTGG+TGG + chr4.2:33537313-33537332 MS.gene052265:intron 35.0%
!!! AGATATTTTGGTAATCTGCC+GGG + chr4.2:33538155-33538174 MS.gene052265:intron 35.0%
!!! CTATTATGGTTGCTTTTGGT+GGG + chr4.2:33537314-33537333 MS.gene052265:intron 35.0%
!!! CTCAAGTTGGTCTTTGATTT+TGG - chr4.2:33536232-33536251 None:intergenic 35.0%
AATGAAAAGCAAGGGAGAGT+AGG + chr4.2:33537933-33537952 MS.gene052265:intron 40.0%
CATTAGGATTATGTCTAGGC+TGG + chr4.2:33537831-33537850 MS.gene052265:intron 40.0%
GATTGCTCCAAGTGAGTATT+TGG + chr4.2:33538575-33538594 MS.gene052265:intron 40.0%
GGTAGTTCCAAATACTCACT+TGG - chr4.2:33538585-33538604 None:intergenic 40.0%
GTGGCTGATTAATCATTGTG+AGG + chr4.2:33537640-33537659 MS.gene052265:intron 40.0%
TAGCCTAGTGATTTACATCC+CGG - chr4.2:33538176-33538195 None:intergenic 40.0%
TGCTTAGATTGCGACATTCT+AGG + chr4.2:33536769-33536788 MS.gene052265:intron 40.0%
TGTAAAGGAACTCTTGTGGA+AGG + chr4.2:33538116-33538135 MS.gene052265:intron 40.0%
TGTCAGAACCTCTAATAGGT+TGG + chr4.2:33538252-33538271 MS.gene052265:intron 40.0%
TTCAATGTCAATGTGCAGGT+GGG + chr4.2:33537087-33537106 MS.gene052265:intron 40.0%
TTCAGAAAGCAAGCATGGAT+AGG - chr4.2:33538897-33538916 None:intergenic 40.0%
TTTCAATGTCAATGTGCAGG+TGG + chr4.2:33537086-33537105 MS.gene052265:intron 40.0%
! ATGTCATTGGTTGAGCTTGT+TGG + chr4.2:33537022-33537041 MS.gene052265:intron 40.0%
! CTTGCTTTGGGTTACTTCAT+TGG + chr4.2:33536099-33536118 MS.gene052265:CDS 40.0%
! GCTTTAAACAATGATTGGGC+AGG + chr4.2:33537698-33537717 MS.gene052265:intron 40.0%
! GTCATGGTTGAGTGCAATTT+TGG + chr4.2:33536062-33536081 MS.gene052265:CDS 40.0%
!! CATACTTGCTTGCTGTACAT+TGG + chr4.2:33537255-33537274 MS.gene052265:intron 40.0%
!! GAGCTCCAAAGGCTTTAAAT+AGG + chr4.2:33536997-33537016 MS.gene052265:CDS 40.0%
!! GTCTTTTGCTGTGTTAGGAA+AGG + chr4.2:33538499-33538518 MS.gene052265:intron 40.0%
!! TGGATAGGCATTTTCAAGCA+TGG - chr4.2:33538882-33538901 None:intergenic 40.0%
!! TGGTTGAGTGCAATTTTGGT+TGG + chr4.2:33536066-33536085 MS.gene052265:CDS 40.0%
AAACAATGATTGGGCAGGGA+GGG + chr4.2:33537703-33537722 MS.gene052265:intron 45.0%
ACCTCATCTACCACTTCAAC+AGG - chr4.2:33539273-33539292 None:intergenic 45.0%
ACCTGTTGAAGTGGTAGATG+AGG + chr4.2:33539269-33539288 MS.gene052265:CDS 45.0%
ACTAGAGAAGTTCAGCAACC+AGG + chr4.2:33537352-33537371 MS.gene052265:intron 45.0%
CAAGCTGTTCAACCTCAAGT+TGG - chr4.2:33536245-33536264 None:intergenic 45.0%
GAAAGATTGCAGCTCAATGC+AGG + chr4.2:33536414-33536433 MS.gene052265:CDS 45.0%
GAAGTGGTAGATGAGGTAAC+AGG + chr4.2:33539276-33539295 MS.gene052265:CDS 45.0%
TAAACAATGATTGGGCAGGG+AGG + chr4.2:33537702-33537721 MS.gene052265:intron 45.0%
TCGTAAGTGCTTATGCCTGT+AGG + chr4.2:33536671-33536690 MS.gene052265:intron 45.0%
TCTAGATTCCAGAACGGTGA+TGG + chr4.2:33539124-33539143 MS.gene052265:intron 45.0%
TGCAGTGTTAGTGAGCATAG+AGG - chr4.2:33537582-33537601 None:intergenic 45.0%
! AGAACGGTGATGGCAATTCT+CGG + chr4.2:33539134-33539153 MS.gene052265:CDS 45.0%
!! GAACAGTTCGTCTTTTAGGG+TGG - chr4.2:33537980-33537999 None:intergenic 45.0%
!! GGTGCTGGTTATCTTGCTTT+GGG + chr4.2:33536087-33536106 MS.gene052265:CDS 45.0%
!! TGGTGCTGGTTATCTTGCTT+TGG + chr4.2:33536086-33536105 MS.gene052265:CDS 45.0%
!!! AGTGCAATTTTGGTTGGTGC+TGG + chr4.2:33536072-33536091 MS.gene052265:CDS 45.0%
!!! AAATAAAATTTAAGATAAAA+TGG - chr4.2:33538431-33538450 None:intergenic 5.0%
AACAATGATTGGGCAGGGAG+GGG + chr4.2:33537704-33537723 MS.gene052265:intron 50.0%
AGATCCCTCATTCGCGTGAA+GGG + chr4.2:33536839-33536858 MS.gene052265:intron 50.0%
ATGTGCAGGACCTGTTGAAG+TGG + chr4.2:33539260-33539279 MS.gene052265:intron 50.0%
CTGCCGGGATGTAAATCACT+AGG + chr4.2:33538170-33538189 MS.gene052265:intron 50.0%
GAGAATTGCCATCACCGTTC+TGG - chr4.2:33539135-33539154 None:intergenic 50.0%
GGTTCTTTACCGAGCTCCAA+AGG + chr4.2:33536986-33537005 MS.gene052265:CDS 50.0%
GTGGTAGATGAGGTAACAGG+TGG + chr4.2:33539279-33539298 MS.gene052265:CDS 50.0%
TTCACCCTTCACGCGAATGA+GGG - chr4.2:33536846-33536865 None:intergenic 50.0%
GAGATCCCTCATTCGCGTGA+AGG + chr4.2:33536838-33536857 MS.gene052265:intron 55.0%
GGAGATGTCTGCACAGCCTA+AGG + chr4.2:33537108-33537127 MS.gene052265:CDS 55.0%
GTTCACCCTTCACGCGAATG+AGG - chr4.2:33536847-33536866 None:intergenic 55.0%
GATTGGGCAGGGAGGGGAAG+TGG + chr4.2:33537710-33537729 MS.gene052265:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 33536054 33539317 33536054 ID=MS.gene052265
chr4.2 mRNA 33536054 33539317 33536054 ID=MS.gene052265.t1;Parent=MS.gene052265
chr4.2 exon 33536054 33536290 33536054 ID=MS.gene052265.t1.exon1;Parent=MS.gene052265.t1
chr4.2 CDS 33536054 33536290 33536054 ID=cds.MS.gene052265.t1;Parent=MS.gene052265.t1
chr4.2 exon 33536377 33536435 33536377 ID=MS.gene052265.t1.exon2;Parent=MS.gene052265.t1
chr4.2 CDS 33536377 33536435 33536377 ID=cds.MS.gene052265.t1;Parent=MS.gene052265.t1
chr4.2 exon 33536959 33537018 33536959 ID=MS.gene052265.t1.exon3;Parent=MS.gene052265.t1
chr4.2 CDS 33536959 33537018 33536959 ID=cds.MS.gene052265.t1;Parent=MS.gene052265.t1
chr4.2 exon 33537105 33537174 33537105 ID=MS.gene052265.t1.exon4;Parent=MS.gene052265.t1
chr4.2 CDS 33537105 33537174 33537105 ID=cds.MS.gene052265.t1;Parent=MS.gene052265.t1
chr4.2 exon 33538516 33538585 33538516 ID=MS.gene052265.t1.exon5;Parent=MS.gene052265.t1
chr4.2 CDS 33538516 33538585 33538516 ID=cds.MS.gene052265.t1;Parent=MS.gene052265.t1
chr4.2 exon 33539129 33539155 33539129 ID=MS.gene052265.t1.exon6;Parent=MS.gene052265.t1
chr4.2 CDS 33539129 33539155 33539129 ID=cds.MS.gene052265.t1;Parent=MS.gene052265.t1
chr4.2 exon 33539268 33539317 33539268 ID=MS.gene052265.t1.exon7;Parent=MS.gene052265.t1
chr4.2 CDS 33539268 33539317 33539268 ID=cds.MS.gene052265.t1;Parent=MS.gene052265.t1
Gene Sequence

>MS.gene052265

ATGGAAATGTCATGGTTGAGTGCAATTTTGGTTGGTGCTGGTTATCTTGCTTTGGGTTACTTCATTGGTTCTCGTAAAAATTTCATCTTCTCACAGAAATTTTCATTCTCTAAAGACAAAGATGCTTCACTTCTCAATGATGACAAGAAAAGTAAGCAGAAGAAGAATACTAAGCCCAAAATCAAAGACCAACTTGAGGTTGAACAGCTTGCTGATATTCTCGAAGATTTTAAGATGGTAAATTTACAAAAAAGTTCTCTTTTTTATTCAAATTACTAGCTTTATTTTAATGGGTTGTTTCAAAAATTGTTCCTTTTTTGTAGATACTTGTTGTTAGAAATGATCTTAAAATGGGTAAAGGAAAGATTGCAGCTCAATGCAGGTATGTAATCTTTGTTGGTGTTAATTTGATCTTGTTTGGATAAGCACTCAATGGATAAGCTAATTAATTAAGTGCTTATCGTATAAAGATTTGTGTATAAGCTATTTCGATAATGAAAGTTAAAATAAAGTCGAACTGTTGTTCTATAAGCTATCCTGGATAAGTAATGAAAATGAGTTGAAAACAGTTTATGGACATGAAATAAGTTATTTCCATAAGCTCTCCCAAACAAATATCGTAAGTGCTTATGCCTGTAGGTAAGCTCAAATATGTCAATCTAATTAGGTTCTTACTTTATTTAAAACTTTGAATACCTTCCAAATAGATTATTATTGCTTAGATTGCGACATTCTAGGCTAATTAAAACTCTTTATTCTACTAGTTTGTAGAAGCACACTAACAGAGATCCCTCATTCGCGTGAAGGGTGAACTTCATCTTTTTTATTGTTCCTGTTCTGTTTTTAATCCAGAAAAAAAATATAAACGGTCAAGCTCAGTTTTTTATCTCTCTTTCATTTTGTAGTCATGCAACATTGGGTCTCTACAAAAAGGTTCTTTACCGAGCTCCAAAGGCTTTAAATAGGTAATGTCATTGGTTGAGCTTGTTGGTCATCATTGAATTATATAGATTCATAGTTCATTCTCAAGTTTTTCAATGTCAATGTGCAGGTGGGAGATGTCTGCACAGCCTAAGGTTGTTGTCAAAATTGAAAGTGAAGAAGATATGCTGGCTTTGCAAGTAAATATTGTTTGATTTTTAGGGAAATCATGTCCAATATTAACTATGTTCTCTTTCAATCTATTCTAAGATCTTTATTGCATACTTGCTTGCTGTACATTGGTCAGTTATTGACTGTGATTATGACACCAAATAAACACTATTATGGTTGCTTTTGGTGGGAAAGTATGCAAGAGAACTAGAGAAGTTCAGCAACCAGGAGAAAAATAGAAAATAAACATCCTTTTGACATTTGAACTAGGCAAAAAATAGTAGATTTTGGTCAGTTATTATACTTGTAGAAACTGTCTAAGGCCTGTTTAATCAATGAAAGTAAAAAGGGTTGCTTTTATTGAGCAATGCAAGACATGAAACTTAGGCTTAACTGAAAATATTATATTCAAAGTTGAAACTTGGAGAATGAACCTCTATGCTCACTAACACTGCAATCATATTAGGCTTTAAAGCTGTTTCAAAAGAAATGTTGTGGCTGATTAATCATTGTGAGGTGATAGCTCTCTATACGTAGCAGTGTATAATTTGGGCTTTAAACAATGATTGGGCAGGGAGGGGAAGTGGAGAAATTCATTTAGCAGAAATATTTTGATAAAAAGTACCAAATTAAAAGAAAAATATCCTTTTAATTTATTAGGCTGAAAAGATTAATCAAATGATATCATTAGGATTATGTCTAGGCTGGATTAAATTGTATGAAAAAATACAAAAGAAGTTATAGATATGAAAACTTTGAATAAGATTTTGTAATCTGTGCTATATGCAATGAAAAGCAAGGGAGAGTAGGTATGAATAGCATACAATTTGTCCACCCTAAAAGACGAACTGTTCTTGTTTAAACTTTGAACTAGAAGTAAATGAGTATTTTGTATTTTTTTTTATTATTCTAATAACACTATGGTTGTATTTGCTTTCTTAAAAGTTGTAAATTAAACGTCTTTTATTATTGTAAAGGAACTCTTGTGGAAGGTTTAATAAGCTCAGTTAGATATTTTGGTAATCTGCCGGGATGTAAATCACTAGGCTATTTTTCAATAAAAAAGTATAGCATAAACAAGGTTTATTATGTTATTATCAAGATACTGTCAGAACCTCTAATAGGTTGGACTATTTTGTTTTGCTTACTGATTTTACACAAACTTATTTGATATATTGACTCGTATTATCTTTTTCTACAAATCATTTTGTCGTATTCTTTAGTATCCTCTTCCATAGTTCACTTAAATATCTCCAAAATTAGGTTCTTTCATGTTTTTCATCCATTTTATCTTAAATTTTATTTTTATGCATAACTCTCCTTTCTAAAGATAGCTTTTGTATTAGTAATACTGTCTTTTGCTGTGTTAGGAAAGGGCTAAATCTCTGAAGTTGCCTACTCATATCACAATTGATGCTGGTAGAACACAGATTGCTCCAAGTGAGTATTTGGAACTACCCTTATCTTCTTGTTAATTGATTGATTTGTAATGTTCTCCACATAATTGGAAATTTTACCTGTGTGTTATTTTACTGCCTTATAGTAGCATTAAAAAAAAAAATGAACGTATCACACTCGATGCAAATTGTCATGTATATTGGCTGGGTATCAATTAGATTGTGTCTATAAAAGCCATGTACAATTAGATCTGAAATAGTTATAGTTTTCAAGCAATCCCCTAAAATGAAATATACATCCCTCCATTATCCTCATCTTATACATTGAAGTTTAATCCATGCTTGAAAATGCCTATCCATGCTTGCTTTCTGAAGAAAATAAATATGCAGTTTGTTCCTTTGTATTGTCTAAAACTGTGTCTGATTTTAAAAACGATATGTATGCTAAATAGTAATCAGAATGAGTAACTGCCTTTTCTTTTGTTTTTTCGTTGCATATTCTACTTTTGTATCTGTATGATATGAAGGTTTTGTTTATATTTAATATGCTTATCATAGTTAATTTTCTTTTTTTTGTTTCTTCTAGATTCCAGAACGGTGATGGCAATTCTCGGTAACGCTCTCCTCTAATAGAATGACCATTTATATTTTTTCTTGTCAACTTAGCTTTTTCTATTCTTTTTACAGCTCAAAATAGTTCGATTTAACATGATGTTCATGTGCAGGACCTGTTGAAGTGGTAGATGAGGTAACAGGTGGACTGAAACTTCTATAA
Protein sequence

>MS.gene052265.t1

MEMSWLSAILVGAGYLALGYFIGSRKNFIFSQKFSFSKDKDASLLNDDKKSKQKKNTKPKIKDQLEVEQLADILEDFKMILVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMSAQPKVVVKIESEEDMLALQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDEVTGGLKLL