AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052268

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052268.t1 MTR_4g075280 97.895 190 4 0 1 190 1 190 2.78e-136 379
MS.gene052268.t1 MTR_3g109700 45.865 133 68 3 60 190 63 193 8.03e-34 119
MS.gene052268.t1 MTR_3g109700 44.444 108 57 2 57 163 60 165 8.83e-26 97.8
MS.gene052268.t1 MTR_3g109700 44.860 107 56 2 57 162 60 164 2.37e-25 97.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052268.t1 AT5G16870 69.474 190 37 4 1 190 1 169 4.99e-86 251
MS.gene052268.t1 AT3G03010 69.318 176 41 2 17 190 15 179 5.75e-80 236
MS.gene052268.t1 AT3G03010 69.318 176 41 2 17 190 15 179 5.75e-80 236
MS.gene052268.t1 AT3G03010 69.318 176 41 2 17 190 15 179 5.75e-80 236
MS.gene052268.t1 AT3G03010 61.719 128 36 2 17 142 15 131 1.68e-45 147
MS.gene052268.t1 AT3G03010 61.719 128 36 2 17 142 15 131 1.68e-45 147
MS.gene052268.t1 AT4G32900 48.718 117 59 1 75 190 77 193 6.02e-34 119
MS.gene052268.t1 AT4G32900 45.556 90 49 0 75 164 77 166 2.06e-24 94.4
MS.gene052268.t1 AT4G32900 45.556 90 49 0 75 164 77 166 2.06e-24 94.4
MS.gene052268.t1 AT4G32900 46.875 64 34 0 75 138 77 140 4.23e-16 72.0

Find 30 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAAGTTGGTCTTTGATTT+TGG 0.042547 4.2:-33491520 None:intergenic
TGTTAGAAATGATCTTAAAA+TGG 0.178309 4.2:+33491676 MS.gene052268:CDS
CTTGCTTTGGGTTACTTCAT+TGG 0.226259 4.2:+33491390 MS.gene052268:CDS
GTCATGGTTGAGTGCAATTT+TGG 0.265900 4.2:+33491353 MS.gene052268:CDS
TGGTGCTGGTTATCTTGCTT+TGG 0.338108 4.2:+33491377 MS.gene052268:CDS
GGTGCTGGTTATCTTGCTTT+GGG 0.344764 4.2:+33491378 MS.gene052268:CDS
AACATTGGGTCTCTACAAAA+AGG 0.347125 4.2:+33492256 MS.gene052268:CDS
CATTACCTATTTAAAGCCTT+TGG 0.351201 4.2:-33492293 None:intergenic
GAGAATTGCCATCACCGTTC+TGG 0.354128 4.2:-33494423 None:intergenic
GAGCTCCAAAGGCTTTAAAT+AGG 0.364463 4.2:+33492288 MS.gene052268:CDS
GTTAGAAATGATCTTAAAAT+GGG 0.382687 4.2:+33491677 MS.gene052268:CDS
ACCTCATCTACCACTTCAAC+AGG 0.458269 4.2:-33494561 None:intergenic
TATTTAAAGCCTTTGGAGCT+CGG 0.471485 4.2:-33492286 None:intergenic
AATGATCTTAAAATGGGTAA+AGG 0.501457 4.2:+33491683 MS.gene052268:CDS
AGAACGGTGATGGCAATTCT+CGG 0.504068 4.2:+33494425 MS.gene052268:CDS
GAAAGATTGCAGCTCAATGC+AGG 0.516623 4.2:+33491705 MS.gene052268:CDS
GGAGATGTCTGCACAGCCTA+AGG 0.521064 4.2:+33492399 MS.gene052268:CDS
TGAAAGTGAAGAAGATATGC+TGG 0.522958 4.2:+33492435 MS.gene052268:CDS
TCTAGATTCCAGAACGGTGA+TGG 0.534748 4.2:+33494415 MS.gene052268:intron
ACTCATATCACAATTGATGC+TGG 0.549551 4.2:+33493834 MS.gene052268:CDS
GGTTCTTTACCGAGCTCCAA+AGG 0.550602 4.2:+33492277 MS.gene052268:CDS
GCATCAATTGTGATATGAGT+AGG 0.570579 4.2:-33493831 None:intergenic
GAAGTGGTAGATGAGGTAAC+AGG 0.582781 4.2:+33494567 MS.gene052268:CDS
CAAGCTGTTCAACCTCAAGT+TGG 0.585211 4.2:-33491533 None:intergenic
ACCTGTTGAAGTGGTAGATG+AGG 0.590585 4.2:+33494560 MS.gene052268:CDS
ATGTGCAGGACCTGTTGAAG+TGG 0.631821 4.2:+33494551 MS.gene052268:intron
GTTTCTTCTAGATTCCAGAA+CGG 0.652178 4.2:+33494409 MS.gene052268:intron
GTGGTAGATGAGGTAACAGG+TGG 0.666083 4.2:+33494570 MS.gene052268:CDS
TGATTGAAATGGAAATGTCA+TGG 0.672695 4.2:+33491337 None:intergenic
CAAAATCAAAGACCAACTTG+AGG 0.704651 4.2:+33491521 MS.gene052268:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATCCTTTTAATTTATT+AGG + chr4.2:33493075-33493094 MS.gene052268:intron 10.0%
!!! TAAATATTGTTTGATTTTTA+GGG + chr4.2:33492467-33492486 MS.gene052268:intron 10.0%
!! ATCCAGAAAAAAAATATAAA+CGG + chr4.2:33492191-33492210 MS.gene052268:intron 15.0%
!! ATTAATCAAATGATATCATT+AGG + chr4.2:33493106-33493125 MS.gene052268:intron 15.0%
!! TTAATCAATGAAAGTAAAAA+GGG + chr4.2:33492765-33492784 MS.gene052268:intron 15.0%
!! TTATTATTCTAATAACACTA+TGG + chr4.2:33493338-33493357 MS.gene052268:intron 15.0%
!! TTGACAAGAAAAAATATAAA+TGG - chr4.2:33494475-33494494 None:intergenic 15.0%
!! TTTAATCAATGAAAGTAAAA+AGG + chr4.2:33492764-33492783 MS.gene052268:intron 15.0%
!!! AATTACTAGCTTTATTTTAA+TGG + chr4.2:33491615-33491634 MS.gene052268:intron 15.0%
!!! AGGATATTTTTCTTTTAATT+TGG - chr4.2:33493064-33493083 None:intergenic 15.0%
!!! ATTACTAGCTTTATTTTAAT+GGG + chr4.2:33491616-33491635 MS.gene052268:intron 15.0%
!!! GTAAATATTGTTTGATTTTT+AGG + chr4.2:33492466-33492485 MS.gene052268:intron 15.0%
!!! TTTTTTTTAATGCTACTATA+AGG - chr4.2:33493975-33493994 None:intergenic 15.0%
!! AAAGAGAACATAGTTAATAT+TGG - chr4.2:33492502-33492521 None:intergenic 20.0%
!! AATCAATTAACAAGAAGATA+AGG - chr4.2:33493898-33493917 None:intergenic 20.0%
!! ACTTAAATATCTCCAAAATT+AGG + chr4.2:33493678-33493697 MS.gene052268:intron 20.0%
!! ATCAATTAACAAGAAGATAA+GGG - chr4.2:33493897-33493916 None:intergenic 20.0%
!! CTAAGCAATAATAATCTATT+TGG - chr4.2:33492047-33492066 None:intergenic 20.0%
!! GTTAGAAATGATCTTAAAAT+GGG + chr4.2:33491677-33491696 MS.gene052268:CDS 20.0%
!! TCAAATATGTCAATCTAATT+AGG + chr4.2:33491990-33492009 MS.gene052268:intron 20.0%
!! TGTTAGAAATGATCTTAAAA+TGG + chr4.2:33491676-33491695 MS.gene052268:CDS 20.0%
!! TTATATTCAAAGTTGAAACT+TGG + chr4.2:33492839-33492858 MS.gene052268:intron 20.0%
!! TTTCAGCCTAATAAATTAAA+AGG - chr4.2:33493084-33493103 None:intergenic 20.0%
!!! AAAAAAGTATAGCATAAACA+AGG + chr4.2:33493496-33493515 MS.gene052268:intron 20.0%
!!! AACGTCTTTTATTATTGTAA+AGG + chr4.2:33493392-33493411 MS.gene052268:intron 20.0%
!!! TTTACTTTCATTGATTAAAC+AGG - chr4.2:33492763-33492782 None:intergenic 20.0%
!!! TTTATTTTCTATTTTTCTCC+TGG - chr4.2:33492664-33492683 None:intergenic 20.0%
! AAACTTCAATGTATAAGATG+AGG - chr4.2:33494147-33494166 None:intergenic 25.0%
! AATGATCTTAAAATGGGTAA+AGG + chr4.2:33491683-33491702 MS.gene052268:CDS 25.0%
! AATGTATAAGATGAGGATAA+TGG - chr4.2:33494140-33494159 None:intergenic 25.0%
! ACAACAAGTATCTACAAAAA+AGG - chr4.2:33491659-33491678 None:intergenic 25.0%
! ACACCAAATAAACACTATTA+TGG + chr4.2:33492591-33492610 MS.gene052268:intron 25.0%
! AGGTAAAATTTCCAATTATG+TGG - chr4.2:33493936-33493955 None:intergenic 25.0%
! ATAAATGGTCATTCTATTAG+AGG - chr4.2:33494460-33494479 None:intergenic 25.0%
! ATATCATTAGGATTATGTCT+AGG + chr4.2:33493118-33493137 MS.gene052268:intron 25.0%
! ATGCAAATTGTCATGTATAT+TGG + chr4.2:33494015-33494034 MS.gene052268:intron 25.0%
! ATTTCAGATCTAATTGTACA+TGG - chr4.2:33494072-33494091 None:intergenic 25.0%
! CAACCATAATAGTGTTTATT+TGG - chr4.2:33492597-33492616 None:intergenic 25.0%
! CAACGAAAAAACAAAAGAAA+AGG - chr4.2:33494308-33494327 None:intergenic 25.0%
! CTTTAAATAGGTAATGTCAT+TGG + chr4.2:33492300-33492319 MS.gene052268:intron 25.0%
! GCAATAATAATCTATTTGGA+AGG - chr4.2:33492043-33492062 None:intergenic 25.0%
! TTTGTATCTGTATGATATGA+AGG + chr4.2:33494339-33494358 MS.gene052268:intron 25.0%
!! AACATGAAAGAACCTAATTT+TGG - chr4.2:33493693-33493712 None:intergenic 25.0%
!! AATGAGTTGAAAACAGTTTA+TGG + chr4.2:33491898-33491917 MS.gene052268:intron 25.0%
!! AGGCAAAAAATAGTAGATTT+TGG + chr4.2:33492705-33492724 MS.gene052268:intron 25.0%
!! AGGGATGTATATTTCATTTT+AGG - chr4.2:33494117-33494136 None:intergenic 25.0%
!! ATAAGCTCAGTTAGATATTT+TGG + chr4.2:33493434-33493453 MS.gene052268:intron 25.0%
!! GGATGTATATTTCATTTTAG+GGG - chr4.2:33494115-33494134 None:intergenic 25.0%
!! GGGATGTATATTTCATTTTA+GGG - chr4.2:33494116-33494135 None:intergenic 25.0%
!! TACAAAAGCTATCTTTAGAA+AGG - chr4.2:33493759-33493778 None:intergenic 25.0%
!!! GACCGTTTATATTTTTTTTC+TGG - chr4.2:33492196-33492215 None:intergenic 25.0%
!!! TATTCTCGAAGATTTTAAGA+TGG + chr4.2:33491560-33491579 MS.gene052268:CDS 25.0%
AAAATAGTCCAACCTATTAG+AGG - chr4.2:33493554-33493573 None:intergenic 30.0%
AAATTGTCATGTATATTGGC+TGG + chr4.2:33494019-33494038 MS.gene052268:intron 30.0%
AAGCACTTACGATATTTGTT+TGG - chr4.2:33491954-33491973 None:intergenic 30.0%
ACTAACACTGCAATCATATT+AGG + chr4.2:33492881-33492900 MS.gene052268:intron 30.0%
AGCACTTACGATATTTGTTT+GGG - chr4.2:33491953-33491972 None:intergenic 30.0%
ATACGTAGCAGTGTATAATT+TGG + chr4.2:33492966-33492985 MS.gene052268:intron 30.0%
ATACTTGTAGAAACTGTCTA+AGG + chr4.2:33492737-33492756 MS.gene052268:intron 30.0%
ATTTAAGTGAACTATGGAAG+AGG - chr4.2:33493666-33493685 None:intergenic 30.0%
CTATATGCAATGAAAAGCAA+GGG + chr4.2:33493216-33493235 MS.gene052268:intron 30.0%
CTGTTTCAAAAGAAATGTTG+TGG + chr4.2:33492912-33492931 MS.gene052268:intron 30.0%
GGAGATATTTAAGTGAACTA+TGG - chr4.2:33493672-33493691 None:intergenic 30.0%
TACGTAGCAGTGTATAATTT+GGG + chr4.2:33492967-33492986 MS.gene052268:intron 30.0%
TGTAATGTTCTCCACATAAT+TGG + chr4.2:33493922-33493941 MS.gene052268:intron 30.0%
TTATTGTAAAGGAACTCTTG+TGG + chr4.2:33493403-33493422 MS.gene052268:intron 30.0%
TTCTGGATTAAAAACAGAAC+AGG - chr4.2:33492179-33492198 None:intergenic 30.0%
! AATTGTCATGTATATTGGCT+GGG + chr4.2:33494020-33494039 MS.gene052268:intron 30.0%
! ATCCTTTTGACATTTGAACT+AGG + chr4.2:33492685-33492704 MS.gene052268:intron 30.0%
! ATTTTGTAGTCATGCAACAT+TGG + chr4.2:33492241-33492260 MS.gene052268:intron 30.0%
! CATTACCTATTTAAAGCCTT+TGG - chr4.2:33492296-33492315 None:intergenic 30.0%
! CTCATTTTCATTACTTATCC+AGG - chr4.2:33491884-33491903 None:intergenic 30.0%
! GGTGTTAATTTGATCTTGTT+TGG + chr4.2:33491743-33491762 MS.gene052268:intron 30.0%
! TTTTGTAGTCATGCAACATT+GGG + chr4.2:33492242-33492261 MS.gene052268:intron 30.0%
!! AACACTATTATGGTTGCTTT+TGG + chr4.2:33492601-33492620 MS.gene052268:intron 30.0%
!! TATAAGATGAGGATAATGGA+GGG - chr4.2:33494136-33494155 None:intergenic 30.0%
!! TCAATTTTGACAACAACCTT+AGG - chr4.2:33492418-33492437 None:intergenic 30.0%
!! TTGGGCTTTAAACAATGATT+GGG + chr4.2:33492985-33493004 MS.gene052268:intron 30.0%
!! TTTGGGCTTTAAACAATGAT+TGG + chr4.2:33492984-33493003 MS.gene052268:intron 30.0%
!!! CACAGTTTTAGACAATACAA+AGG - chr4.2:33494233-33494252 None:intergenic 30.0%
!!! TAGATATTTTGGTAATCTGC+CGG + chr4.2:33493445-33493464 MS.gene052268:intron 30.0%
!!! TCAAGTTGGTCTTTGATTTT+GGG - chr4.2:33491522-33491541 None:intergenic 30.0%
AACATTGGGTCTCTACAAAA+AGG + chr4.2:33492256-33492275 MS.gene052268:CDS 35.0%
AAGGCAGTAAAATAACACAC+AGG - chr4.2:33493956-33493975 None:intergenic 35.0%
ACATATTTGAGCTTACCTAC+AGG - chr4.2:33491980-33491999 None:intergenic 35.0%
ACTCATATCACAATTGATGC+TGG + chr4.2:33493834-33493853 MS.gene052268:CDS 35.0%
ATACTGTCAGAACCTCTAAT+AGG + chr4.2:33493539-33493558 MS.gene052268:intron 35.0%
CAAAATCAAAGACCAACTTG+AGG + chr4.2:33491521-33491540 MS.gene052268:CDS 35.0%
CAATGCAAGACATGAAACTT+AGG + chr4.2:33492802-33492821 MS.gene052268:intron 35.0%
CTTTAAACAATGATTGGGCA+GGG + chr4.2:33492990-33493009 MS.gene052268:intron 35.0%
GCATCAATTGTGATATGAGT+AGG - chr4.2:33493834-33493853 None:intergenic 35.0%
GCTATATGCAATGAAAAGCA+AGG + chr4.2:33493215-33493234 MS.gene052268:intron 35.0%
GTTTCTTCTAGATTCCAGAA+CGG + chr4.2:33494409-33494428 MS.gene052268:intron 35.0%
TATTTGTTTGGGAGAGCTTA+TGG - chr4.2:33491942-33491961 None:intergenic 35.0%
TGAAAGTGAAGAAGATATGC+TGG + chr4.2:33492435-33492454 MS.gene052268:CDS 35.0%
TGCAGGTATGTAATCTTTGT+TGG + chr4.2:33491722-33491741 MS.gene052268:intron 35.0%
TGCCTAGTTCAAATGTCAAA+AGG - chr4.2:33492690-33492709 None:intergenic 35.0%
TGTTGTTCTATAAGCTATCC+TGG + chr4.2:33491863-33491882 MS.gene052268:intron 35.0%
TTAACATGATGTTCATGTGC+AGG + chr4.2:33494537-33494556 MS.gene052268:intron 35.0%
TTGTTTGGATAAGCACTCAA+TGG + chr4.2:33491758-33491777 MS.gene052268:intron 35.0%
! ACAAGAACAGTTCGTCTTTT+AGG - chr4.2:33493275-33493294 None:intergenic 35.0%
! CAAGAACAGTTCGTCTTTTA+GGG - chr4.2:33493274-33493293 None:intergenic 35.0%
! GTATAAGATGAGGATAATGG+AGG - chr4.2:33494137-33494156 None:intergenic 35.0%
! TTTTCTTCAGAAAGCAAGCA+TGG - chr4.2:33494193-33494212 None:intergenic 35.0%
!! ATACTGTCTTTTGCTGTGTT+AGG + chr4.2:33493785-33493804 MS.gene052268:intron 35.0%
!! GTTTTTCAATGTCAATGTGC+AGG + chr4.2:33492374-33492393 MS.gene052268:intron 35.0%
!! TATTTAAAGCCTTTGGAGCT+CGG - chr4.2:33492289-33492308 None:intergenic 35.0%
!! TCTTTTGCTGTGTTAGGAAA+GGG + chr4.2:33493791-33493810 MS.gene052268:intron 35.0%
!!! ACTATTATGGTTGCTTTTGG+TGG + chr4.2:33492604-33492623 MS.gene052268:intron 35.0%
!!! AGATATTTTGGTAATCTGCC+GGG + chr4.2:33493446-33493465 MS.gene052268:intron 35.0%
!!! CTATTATGGTTGCTTTTGGT+GGG + chr4.2:33492605-33492624 MS.gene052268:intron 35.0%
!!! CTCAAGTTGGTCTTTGATTT+TGG - chr4.2:33491523-33491542 None:intergenic 35.0%
AATGAAAAGCAAGGGAGAGT+AGG + chr4.2:33493224-33493243 MS.gene052268:intron 40.0%
CATTAGGATTATGTCTAGGC+TGG + chr4.2:33493122-33493141 MS.gene052268:intron 40.0%
GATTGCTCCAAGTGAGTATT+TGG + chr4.2:33493866-33493885 MS.gene052268:intron 40.0%
GGTAGTTCCAAATACTCACT+TGG - chr4.2:33493876-33493895 None:intergenic 40.0%
GTGGCTGATTAATCATTGTG+AGG + chr4.2:33492931-33492950 MS.gene052268:intron 40.0%
TAGCCTAGTGATTTACATCC+CGG - chr4.2:33493467-33493486 None:intergenic 40.0%
TGCTTAGATTGCGACATTCT+AGG + chr4.2:33492060-33492079 MS.gene052268:intron 40.0%
TGTAAAGGAACTCTTGTGGA+AGG + chr4.2:33493407-33493426 MS.gene052268:intron 40.0%
TGTCAGAACCTCTAATAGGT+TGG + chr4.2:33493543-33493562 MS.gene052268:intron 40.0%
TTCAATGTCAATGTGCAGGT+GGG + chr4.2:33492378-33492397 MS.gene052268:intron 40.0%
TTCAGAAAGCAAGCATGGAT+AGG - chr4.2:33494188-33494207 None:intergenic 40.0%
TTTCAATGTCAATGTGCAGG+TGG + chr4.2:33492377-33492396 MS.gene052268:intron 40.0%
! ATGTCATTGGTTGAGCTTGT+TGG + chr4.2:33492313-33492332 MS.gene052268:intron 40.0%
! CTTGCTTTGGGTTACTTCAT+TGG + chr4.2:33491390-33491409 MS.gene052268:CDS 40.0%
! GCTTTAAACAATGATTGGGC+AGG + chr4.2:33492989-33493008 MS.gene052268:intron 40.0%
! GTCATGGTTGAGTGCAATTT+TGG + chr4.2:33491353-33491372 MS.gene052268:CDS 40.0%
!! CATACTTGCTTGCTGTACAT+TGG + chr4.2:33492546-33492565 MS.gene052268:intron 40.0%
!! GAGCTCCAAAGGCTTTAAAT+AGG + chr4.2:33492288-33492307 MS.gene052268:CDS 40.0%
!! GTCTTTTGCTGTGTTAGGAA+AGG + chr4.2:33493790-33493809 MS.gene052268:intron 40.0%
!! TGGATAGGCATTTTCAAGCA+TGG - chr4.2:33494173-33494192 None:intergenic 40.0%
!! TGGTTGAGTGCAATTTTGGT+TGG + chr4.2:33491357-33491376 MS.gene052268:CDS 40.0%
AAACAATGATTGGGCAGGGA+GGG + chr4.2:33492994-33493013 MS.gene052268:intron 45.0%
ACCTCATCTACCACTTCAAC+AGG - chr4.2:33494564-33494583 None:intergenic 45.0%
ACCTGTTGAAGTGGTAGATG+AGG + chr4.2:33494560-33494579 MS.gene052268:CDS 45.0%
ACTAGAGAAGTTCAGCAACC+AGG + chr4.2:33492643-33492662 MS.gene052268:intron 45.0%
CAAGCTGTTCAACCTCAAGT+TGG - chr4.2:33491536-33491555 None:intergenic 45.0%
GAAAGATTGCAGCTCAATGC+AGG + chr4.2:33491705-33491724 MS.gene052268:CDS 45.0%
GAAGTGGTAGATGAGGTAAC+AGG + chr4.2:33494567-33494586 MS.gene052268:CDS 45.0%
TAAACAATGATTGGGCAGGG+AGG + chr4.2:33492993-33493012 MS.gene052268:intron 45.0%
TCGTAAGTGCTTATGCCTGT+AGG + chr4.2:33491962-33491981 MS.gene052268:intron 45.0%
TCTAGATTCCAGAACGGTGA+TGG + chr4.2:33494415-33494434 MS.gene052268:intron 45.0%
TGCAGTGTTAGTGAGCATAG+AGG - chr4.2:33492873-33492892 None:intergenic 45.0%
! AGAACGGTGATGGCAATTCT+CGG + chr4.2:33494425-33494444 MS.gene052268:CDS 45.0%
!! GAACAGTTCGTCTTTTAGGG+TGG - chr4.2:33493271-33493290 None:intergenic 45.0%
!! GGTGCTGGTTATCTTGCTTT+GGG + chr4.2:33491378-33491397 MS.gene052268:CDS 45.0%
!! TGGTGCTGGTTATCTTGCTT+TGG + chr4.2:33491377-33491396 MS.gene052268:CDS 45.0%
!!! AGTGCAATTTTGGTTGGTGC+TGG + chr4.2:33491363-33491382 MS.gene052268:CDS 45.0%
!!! AAATAAAATTTAAGATAAAA+TGG - chr4.2:33493722-33493741 None:intergenic 5.0%
AACAATGATTGGGCAGGGAG+GGG + chr4.2:33492995-33493014 MS.gene052268:intron 50.0%
AGATCCCTCATTCGCGTGAA+GGG + chr4.2:33492130-33492149 MS.gene052268:intron 50.0%
ATGTGCAGGACCTGTTGAAG+TGG + chr4.2:33494551-33494570 MS.gene052268:intron 50.0%
CTGCCGGGATGTAAATCACT+AGG + chr4.2:33493461-33493480 MS.gene052268:intron 50.0%
GAGAATTGCCATCACCGTTC+TGG - chr4.2:33494426-33494445 None:intergenic 50.0%
GGTTCTTTACCGAGCTCCAA+AGG + chr4.2:33492277-33492296 MS.gene052268:CDS 50.0%
GTGGTAGATGAGGTAACAGG+TGG + chr4.2:33494570-33494589 MS.gene052268:CDS 50.0%
TTCACCCTTCACGCGAATGA+GGG - chr4.2:33492137-33492156 None:intergenic 50.0%
GAGATCCCTCATTCGCGTGA+AGG + chr4.2:33492129-33492148 MS.gene052268:intron 55.0%
GGAGATGTCTGCACAGCCTA+AGG + chr4.2:33492399-33492418 MS.gene052268:CDS 55.0%
GTTCACCCTTCACGCGAATG+AGG - chr4.2:33492138-33492157 None:intergenic 55.0%
GATTGGGCAGGGAGGGGAAG+TGG + chr4.2:33493001-33493020 MS.gene052268:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 33491345 33494608 33491345 ID=MS.gene052268
chr4.2 mRNA 33491345 33494608 33491345 ID=MS.gene052268.t1;Parent=MS.gene052268
chr4.2 exon 33491345 33491581 33491345 ID=MS.gene052268.t1.exon1;Parent=MS.gene052268.t1
chr4.2 CDS 33491345 33491581 33491345 ID=cds.MS.gene052268.t1;Parent=MS.gene052268.t1
chr4.2 exon 33491668 33491726 33491668 ID=MS.gene052268.t1.exon2;Parent=MS.gene052268.t1
chr4.2 CDS 33491668 33491726 33491668 ID=cds.MS.gene052268.t1;Parent=MS.gene052268.t1
chr4.2 exon 33492250 33492309 33492250 ID=MS.gene052268.t1.exon3;Parent=MS.gene052268.t1
chr4.2 CDS 33492250 33492309 33492250 ID=cds.MS.gene052268.t1;Parent=MS.gene052268.t1
chr4.2 exon 33492396 33492465 33492396 ID=MS.gene052268.t1.exon4;Parent=MS.gene052268.t1
chr4.2 CDS 33492396 33492465 33492396 ID=cds.MS.gene052268.t1;Parent=MS.gene052268.t1
chr4.2 exon 33493807 33493876 33493807 ID=MS.gene052268.t1.exon5;Parent=MS.gene052268.t1
chr4.2 CDS 33493807 33493876 33493807 ID=cds.MS.gene052268.t1;Parent=MS.gene052268.t1
chr4.2 exon 33494420 33494446 33494420 ID=MS.gene052268.t1.exon6;Parent=MS.gene052268.t1
chr4.2 CDS 33494420 33494446 33494420 ID=cds.MS.gene052268.t1;Parent=MS.gene052268.t1
chr4.2 exon 33494559 33494608 33494559 ID=MS.gene052268.t1.exon7;Parent=MS.gene052268.t1
chr4.2 CDS 33494559 33494608 33494559 ID=cds.MS.gene052268.t1;Parent=MS.gene052268.t1
Gene Sequence

>MS.gene052268

ATGGAAATGTCATGGTTGAGTGCAATTTTGGTTGGTGCTGGTTATCTTGCTTTGGGTTACTTCATTGGTTCTCGTAAAAATTTCATCTTCTCACAGAAATTTTCATTCTCTAAAGACAAAGATGCTTCACTTCTCAATGATGACAAGAAAAGTAAGCAGAAGAAGAATACTAAGCCCAAAATCAAAGACCAACTTGAGGTTGAACAGCTTGCTGATATTCTCGAAGATTTTAAGATGGTAAATTTACAAAAAAGTTCTCTTTTTTATTCAAATTACTAGCTTTATTTTAATGGGTTGTTTCAAAAATTGTTCCTTTTTTGTAGATACTTGTTGTTAGAAATGATCTTAAAATGGGTAAAGGAAAGATTGCAGCTCAATGCAGGTATGTAATCTTTGTTGGTGTTAATTTGATCTTGTTTGGATAAGCACTCAATGGATAAGCTAATTAATTAAGTGCTTATCGTATAAAGATTTGTGTATAAGCTATTTCGATAATGAAAGTTAAAATAAAGTCGAACTGTTGTTCTATAAGCTATCCTGGATAAGTAATGAAAATGAGTTGAAAACAGTTTATGGACATGAAATAAGTTATTTCCATAAGCTCTCCCAAACAAATATCGTAAGTGCTTATGCCTGTAGGTAAGCTCAAATATGTCAATCTAATTAGGTTCTTACTTTATTTAAAACTTTGAATACCTTCCAAATAGATTATTATTGCTTAGATTGCGACATTCTAGGCTAATTAAAACTCTTTATTCTACTAGTTTGTAGAAGCACACTAACAGAGATCCCTCATTCGCGTGAAGGGTGAACTTCATCTTTTTTATTGTTCCTGTTCTGTTTTTAATCCAGAAAAAAAATATAAACGGTCAAGCTCAGTTTTTTATCTCTCTTTCATTTTGTAGTCATGCAACATTGGGTCTCTACAAAAAGGTTCTTTACCGAGCTCCAAAGGCTTTAAATAGGTAATGTCATTGGTTGAGCTTGTTGGTCATCATTGAATTATATAGATTCATAGTTCATTCTCAAGTTTTTCAATGTCAATGTGCAGGTGGGAGATGTCTGCACAGCCTAAGGTTGTTGTCAAAATTGAAAGTGAAGAAGATATGCTGGCTTTGCAAGTAAATATTGTTTGATTTTTAGGGAAATCATGTCCAATATTAACTATGTTCTCTTTCAATCTATTCTAAGATCTTTATTGCATACTTGCTTGCTGTACATTGGTCAGTTATTGACTGTGATTATGACACCAAATAAACACTATTATGGTTGCTTTTGGTGGGAAAGTATGCAAGAGAACTAGAGAAGTTCAGCAACCAGGAGAAAAATAGAAAATAAACATCCTTTTGACATTTGAACTAGGCAAAAAATAGTAGATTTTGGTCAGTTATTATACTTGTAGAAACTGTCTAAGGCCTGTTTAATCAATGAAAGTAAAAAGGGTTGCTTTTATTGAGCAATGCAAGACATGAAACTTAGGCTTAACTGAAAATATTATATTCAAAGTTGAAACTTGGAGAATGAACCTCTATGCTCACTAACACTGCAATCATATTAGGCTTTAAAGCTGTTTCAAAAGAAATGTTGTGGCTGATTAATCATTGTGAGGTGATAGCTCTCTATACGTAGCAGTGTATAATTTGGGCTTTAAACAATGATTGGGCAGGGAGGGGAAGTGGAGAAATTCATTTAGCAGAAATATTTTGATAAAAAGTACCAAATTAAAAGAAAAATATCCTTTTAATTTATTAGGCTGAAAAGATTAATCAAATGATATCATTAGGATTATGTCTAGGCTGGATTAAATTGTATGAAAAAATACAAAAGAAGTTATAGATATGAAAACTTTGAATAAGATTTTGTAATCTGTGCTATATGCAATGAAAAGCAAGGGAGAGTAGGTATGAATAGCATACAATTTGTCCACCCTAAAAGACGAACTGTTCTTGTTTAAACTTTGAACTAGAAGTAAATGAGTATTTTGTATTTTTTTTTATTATTCTAATAACACTATGGTTGTATTTGCTTTCTTAAAAGTTGTAAATTAAACGTCTTTTATTATTGTAAAGGAACTCTTGTGGAAGGTTTAATAAGCTCAGTTAGATATTTTGGTAATCTGCCGGGATGTAAATCACTAGGCTATTTTTCAATAAAAAAGTATAGCATAAACAAGGTTTATTATGTTATTATCAAGATACTGTCAGAACCTCTAATAGGTTGGACTATTTTGTTTTGCTTACTGATTTTACACAAACTTATTTGATATATTGACTCGTATTATCTTTTTCTACAAATCATTTTGTCGTATTCTTTAGTATCCTCTTCCATAGTTCACTTAAATATCTCCAAAATTAGGTTCTTTCATGTTTTTCATCCATTTTATCTTAAATTTTATTTTTATGCATAACTCTCCTTTCTAAAGATAGCTTTTGTATTAGTAATACTGTCTTTTGCTGTGTTAGGAAAGGGCTAAATCTCTGAAGTTGCCTACTCATATCACAATTGATGCTGGTAGAACACAGATTGCTCCAAGTGAGTATTTGGAACTACCCTTATCTTCTTGTTAATTGATTGATTTGTAATGTTCTCCACATAATTGGAAATTTTACCTGTGTGTTATTTTACTGCCTTATAGTAGCATTAAAAAAAAAAATGAACGTATCACACTCGATGCAAATTGTCATGTATATTGGCTGGGTATCAATTAGATTGTGTCTATAAAAGCCATGTACAATTAGATCTGAAATAGTTATAGTTTTCAAGCAATCCCCTAAAATGAAATATACATCCCTCCATTATCCTCATCTTATACATTGAAGTTTAATCCATGCTTGAAAATGCCTATCCATGCTTGCTTTCTGAAGAAAATAAATATGCAGTTTGTTCCTTTGTATTGTCTAAAACTGTGTCTGATTTTAAAAACGATATGTATGCTAAATAGTAATCAGAATGAGTAACTGCCTTTTCTTTTGTTTTTTCGTTGCATATTCTACTTTTGTATCTGTATGATATGAAGGTTTTGTTTATATTTAATATGCTTATCATAGTTAATTTTCTTTTTTTTGTTTCTTCTAGATTCCAGAACGGTGATGGCAATTCTCGGTAACGCTCTCCTCTAATAGAATGACCATTTATATTTTTTCTTGTCAACTTAGCTTTTTCTATTCTTTTTACAGCTCAAAATAGTTCGATTTAACATGATGTTCATGTGCAGGACCTGTTGAAGTGGTAGATGAGGTAACAGGTGGACTGAAACTTCTATAA
Protein sequence

>MS.gene052268.t1

MEMSWLSAILVGAGYLALGYFIGSRKNFIFSQKFSFSKDKDASLLNDDKKSKQKKNTKPKIKDQLEVEQLADILEDFKMILVVRNDLKMGKGKIAAQCSHATLGLYKKVLYRAPKALNRWEMSAQPKVVVKIESEEDMLALQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDEVTGGLKLL