Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23090.t1 | XP_013450226.1 | 90.8 | 250 | 23 | 0 | 1 | 250 | 1 | 250 | 6.60E-99 | 370.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23090.t1 | Q9ZSD4 | 57.4 | 256 | 108 | 1 | 15 | 269 | 30 | 285 | 1.2e-69 | 264.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23090.t1 | A0A072U3F0 | 90.8 | 250 | 23 | 0 | 1 | 250 | 1 | 250 | 4.8e-99 | 370.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene23090 | -0.827097 | 1.89E-54 | -1.69E-46 |
| MS.gene049232 | MS.gene23090 | -0.80769 | 4.47E-50 | -1.69E-46 |
| MS.gene049281 | MS.gene23090 | 0.832902 | 7.25E-56 | -1.69E-46 |
| MS.gene049285 | MS.gene23090 | -0.824687 | 7.05E-54 | -1.69E-46 |
| MS.gene049312 | MS.gene23090 | 0.811082 | 8.36E-51 | -1.69E-46 |
| MS.gene049320 | MS.gene23090 | -0.810696 | 1.01E-50 | -1.69E-46 |
| MS.gene049611 | MS.gene23090 | 0.809774 | 1.60E-50 | -1.69E-46 |
| MS.gene049627 | MS.gene23090 | -0.800522 | 1.39E-48 | -1.69E-46 |
| MS.gene05010 | MS.gene23090 | -0.811703 | 6.13E-51 | -1.69E-46 |
| MS.gene050170 | MS.gene23090 | -0.818365 | 2.04E-52 | -1.69E-46 |
| MS.gene050216 | MS.gene23090 | -0.809858 | 1.54E-50 | -1.69E-46 |
| MS.gene050333 | MS.gene23090 | -0.806652 | 7.42E-50 | -1.69E-46 |
| MS.gene050381 | MS.gene23090 | 0.841491 | 4.60E-58 | -1.69E-46 |
| MS.gene050496 | MS.gene23090 | -0.844169 | 8.93E-59 | -1.69E-46 |
| MS.gene050504 | MS.gene23090 | -0.855199 | 7.40E-62 | -1.69E-46 |
| MS.gene050612 | MS.gene23090 | -0.830888 | 2.28E-55 | -1.69E-46 |
| MS.gene050675 | MS.gene23090 | -0.811503 | 6.78E-51 | -1.69E-46 |
| MS.gene050868 | MS.gene23090 | -0.826324 | 2.89E-54 | -1.69E-46 |
| MS.gene050871 | MS.gene23090 | -0.825191 | 5.36E-54 | -1.69E-46 |
| MS.gene050883 | MS.gene23090 | 0.852344 | 4.91E-61 | -1.69E-46 |
| MS.gene050986 | MS.gene23090 | -0.825108 | 5.61E-54 | -1.69E-46 |
| MS.gene051044 | MS.gene23090 | 0.838523 | 2.73E-57 | -1.69E-46 |
| MS.gene051127 | MS.gene23090 | 0.815278 | 1.00E-51 | -1.69E-46 |
| MS.gene051364 | MS.gene23090 | 0.8385 | 2.77E-57 | -1.69E-46 |
| MS.gene051366 | MS.gene23090 | 0.823414 | 1.40E-53 | -1.69E-46 |
| MS.gene051946 | MS.gene23090 | 0.850259 | 1.91E-60 | -1.69E-46 |
| MS.gene052164 | MS.gene23090 | -0.81205 | 5.15E-51 | -1.69E-46 |
| MS.gene052478 | MS.gene23090 | 0.811077 | 8.39E-51 | -1.69E-46 |
| MS.gene052486 | MS.gene23090 | -0.803611 | 3.21E-49 | -1.69E-46 |
| MS.gene052566 | MS.gene23090 | 0.849036 | 4.18E-60 | -1.69E-46 |
| MS.gene052966 | MS.gene23090 | -0.820501 | 6.63E-53 | -1.69E-46 |
| MS.gene053203 | MS.gene23090 | -0.808491 | 3.02E-50 | -1.69E-46 |
| MS.gene053420 | MS.gene23090 | 0.836316 | 1.00E-56 | -1.69E-46 |
| MS.gene053549 | MS.gene23090 | 0.852165 | 5.52E-61 | -1.69E-46 |
| MS.gene053561 | MS.gene23090 | 0.822965 | 1.79E-53 | -1.69E-46 |
| MS.gene054054 | MS.gene23090 | 0.802238 | 6.17E-49 | -1.69E-46 |
| MS.gene054056 | MS.gene23090 | 0.800668 | 1.29E-48 | -1.69E-46 |
| MS.gene054708 | MS.gene23090 | 0.841471 | 4.66E-58 | -1.69E-46 |
| MS.gene05470 | MS.gene23090 | -0.818645 | 1.76E-52 | -1.69E-46 |
| MS.gene054954 | MS.gene23090 | -0.8356 | 1.53E-56 | -1.69E-46 |
| MS.gene054959 | MS.gene23090 | 0.839631 | 1.41E-57 | -1.69E-46 |
| MS.gene055154 | MS.gene23090 | 0.820023 | 8.54E-53 | -1.69E-46 |
| MS.gene055202 | MS.gene23090 | 0.8181 | 2.34E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene23090 | -0.833591 | 4.88E-56 | -1.69E-46 |
| MS.gene055502 | MS.gene23090 | -0.828695 | 7.79E-55 | -1.69E-46 |
| MS.gene055577 | MS.gene23090 | -0.823712 | 1.19E-53 | -1.69E-46 |
| MS.gene055751 | MS.gene23090 | -0.805727 | 1.16E-49 | -1.69E-46 |
| MS.gene055776 | MS.gene23090 | -0.801278 | 9.71E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene23090 | -0.839956 | 1.16E-57 | -1.69E-46 |
| MS.gene055942 | MS.gene23090 | 0.818196 | 2.22E-52 | -1.69E-46 |
| MS.gene056046 | MS.gene23090 | -0.817659 | 2.94E-52 | -1.69E-46 |
| MS.gene056310 | MS.gene23090 | 0.818584 | 1.82E-52 | -1.69E-46 |
| MS.gene056311 | MS.gene23090 | 0.843744 | 1.16E-58 | -1.69E-46 |
| MS.gene056504 | MS.gene23090 | -0.849344 | 3.44E-60 | -1.69E-46 |
| MS.gene056510 | MS.gene23090 | -0.820604 | 6.28E-53 | -1.69E-46 |
| MS.gene056657 | MS.gene23090 | -0.805177 | 1.51E-49 | -1.69E-46 |
| MS.gene057014 | MS.gene23090 | 0.878326 | 3.07E-69 | -1.69E-46 |
| MS.gene058099 | MS.gene23090 | 0.803507 | 3.37E-49 | -1.69E-46 |
| MS.gene058157 | MS.gene23090 | -0.801249 | 9.84E-49 | -1.69E-46 |
| MS.gene058171 | MS.gene23090 | 0.808493 | 3.02E-50 | -1.69E-46 |
| MS.gene058175 | MS.gene23090 | 0.804314 | 2.29E-49 | -1.69E-46 |
| MS.gene058268 | MS.gene23090 | 0.808862 | 2.51E-50 | -1.69E-46 |
| MS.gene058334 | MS.gene23090 | 0.803517 | 3.36E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene23090 | -0.809669 | 1.69E-50 | -1.69E-46 |
| MS.gene058419 | MS.gene23090 | -0.801076 | 1.07E-48 | -1.69E-46 |
| MS.gene058493 | MS.gene23090 | 0.802365 | 5.81E-49 | -1.69E-46 |
| MS.gene058628 | MS.gene23090 | 0.827476 | 1.53E-54 | -1.69E-46 |
| MS.gene058629 | MS.gene23090 | 0.826622 | 2.45E-54 | -1.69E-46 |
| MS.gene058630 | MS.gene23090 | 0.819669 | 1.03E-52 | -1.69E-46 |
| MS.gene058773 | MS.gene23090 | -0.824229 | 9.04E-54 | -1.69E-46 |
| MS.gene05884 | MS.gene23090 | 0.837311 | 5.60E-57 | -1.69E-46 |
| MS.gene059022 | MS.gene23090 | -0.864645 | 1.05E-64 | -1.69E-46 |
| MS.gene059023 | MS.gene23090 | -0.822976 | 1.78E-53 | -1.69E-46 |
| MS.gene059223 | MS.gene23090 | 0.81786 | 2.65E-52 | -1.69E-46 |
| MS.gene059677 | MS.gene23090 | -0.825261 | 5.16E-54 | -1.69E-46 |
| MS.gene059718 | MS.gene23090 | -0.828796 | 7.36E-55 | -1.69E-46 |
| MS.gene059837 | MS.gene23090 | -0.802628 | 5.13E-49 | -1.69E-46 |
| MS.gene059865 | MS.gene23090 | -0.829474 | 5.05E-55 | -1.69E-46 |
| MS.gene059916 | MS.gene23090 | 0.820045 | 8.44E-53 | -1.69E-46 |
| MS.gene060595 | MS.gene23090 | 0.835817 | 1.35E-56 | -1.69E-46 |
| MS.gene060703 | MS.gene23090 | -0.823894 | 1.08E-53 | -1.69E-46 |
| MS.gene060762 | MS.gene23090 | -0.821929 | 3.11E-53 | -1.69E-46 |
| MS.gene060778 | MS.gene23090 | -0.828617 | 8.14E-55 | -1.69E-46 |
| MS.gene06077 | MS.gene23090 | -0.850302 | 1.85E-60 | -1.69E-46 |
| MS.gene060982 | MS.gene23090 | -0.822979 | 1.77E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23090.t1 | MTR_7g106420 | 93.600 | 250 | 16 | 0 | 1 | 250 | 1 | 250 | 1.68e-170 | 473 |
| MS.gene23090.t1 | MTR_1g056550 | 67.300 | 263 | 73 | 2 | 1 | 250 | 1 | 263 | 7.53e-126 | 360 |
| MS.gene23090.t1 | MTR_1g056560 | 54.545 | 275 | 118 | 1 | 7 | 274 | 17 | 291 | 6.50e-102 | 301 |
| MS.gene23090.t1 | MTR_4g090900 | 55.691 | 246 | 109 | 0 | 28 | 273 | 34 | 279 | 6.51e-96 | 284 |
| MS.gene23090.t1 | MTR_2g012270 | 57.848 | 223 | 94 | 0 | 28 | 250 | 33 | 255 | 1.74e-92 | 276 |
| MS.gene23090.t1 | MTR_5g012010 | 48.869 | 221 | 112 | 1 | 31 | 250 | 54 | 274 | 1.73e-71 | 223 |
| MS.gene23090.t1 | MTR_6g028140 | 44.980 | 249 | 132 | 2 | 28 | 274 | 34 | 279 | 3.35e-68 | 214 |
| MS.gene23090.t1 | MTR_2g088700 | 42.009 | 219 | 127 | 0 | 28 | 246 | 39 | 257 | 2.04e-55 | 181 |
| MS.gene23090.t1 | MTR_2g088700 | 41.333 | 225 | 129 | 1 | 28 | 252 | 39 | 260 | 2.14e-55 | 181 |
| MS.gene23090.t1 | MTR_5g020670 | 42.174 | 230 | 121 | 3 | 24 | 250 | 35 | 255 | 1.12e-49 | 166 |
| MS.gene23090.t1 | MTR_8g073900 | 36.567 | 134 | 61 | 2 | 24 | 155 | 35 | 146 | 1.23e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23090.t1 | AT3G11820 | 62.500 | 256 | 95 | 1 | 15 | 269 | 30 | 285 | 2.13e-109 | 320 |
| MS.gene23090.t1 | AT3G11820 | 64.876 | 242 | 85 | 0 | 28 | 269 | 13 | 254 | 3.64e-109 | 318 |
| MS.gene23090.t1 | AT1G11250 | 55.952 | 252 | 107 | 2 | 1 | 250 | 1 | 250 | 2.89e-97 | 288 |
| MS.gene23090.t1 | AT3G52400 | 57.358 | 265 | 98 | 3 | 1 | 250 | 1 | 265 | 7.39e-96 | 286 |
| MS.gene23090.t1 | AT1G61290 | 53.725 | 255 | 113 | 1 | 1 | 250 | 1 | 255 | 6.15e-94 | 279 |
| MS.gene23090.t1 | AT1G61290 | 53.725 | 255 | 113 | 1 | 1 | 250 | 1 | 255 | 6.15e-94 | 279 |
| MS.gene23090.t1 | AT4G03330 | 53.846 | 260 | 108 | 3 | 1 | 250 | 1 | 258 | 1.80e-90 | 271 |
| MS.gene23090.t1 | AT3G03800 | 41.429 | 280 | 152 | 4 | 1 | 271 | 1 | 277 | 5.55e-66 | 208 |
| MS.gene23090.t1 | AT3G03800 | 41.429 | 280 | 152 | 4 | 1 | 271 | 1 | 277 | 5.55e-66 | 208 |
| MS.gene23090.t1 | AT5G08080 | 46.800 | 250 | 121 | 2 | 19 | 268 | 25 | 262 | 1.44e-61 | 197 |
| MS.gene23090.t1 | AT5G08080 | 46.800 | 250 | 121 | 2 | 19 | 268 | 25 | 262 | 1.44e-61 | 197 |
| MS.gene23090.t1 | AT5G08080 | 44.444 | 261 | 122 | 4 | 19 | 268 | 25 | 273 | 1.15e-58 | 189 |
| MS.gene23090.t1 | AT1G08560 | 42.017 | 238 | 132 | 3 | 15 | 250 | 31 | 264 | 2.30e-58 | 189 |
| MS.gene23090.t1 | AT2G18260 | 37.447 | 235 | 140 | 2 | 21 | 255 | 40 | 267 | 7.55e-46 | 156 |
| MS.gene23090.t1 | AT2G18260 | 37.447 | 235 | 140 | 2 | 21 | 255 | 40 | 267 | 7.55e-46 | 156 |
| MS.gene23090.t1 | AT5G08080 | 46.023 | 176 | 95 | 0 | 19 | 194 | 25 | 200 | 4.71e-38 | 134 |
| MS.gene23090.t1 | AT5G08080 | 46.023 | 176 | 95 | 0 | 19 | 194 | 25 | 200 | 4.71e-38 | 134 |
Find 65 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGCTTCATCAAGTGTTTC+TGG | 0.159765 | 7.2:-7540138 | MS.gene23090:CDS |
| CGGAGATACTTTGCTGTTAA+TGG | 0.175180 | 7.2:-7541231 | MS.gene23090:CDS |
| GTTTCTGGACATGGCAGTTT+TGG | 0.265868 | 7.2:-7540123 | MS.gene23090:CDS |
| TCAATTCTTCACCTTGGGCT+TGG | 0.323182 | 7.2:+7540099 | None:intergenic |
| ACGAATTTGCTCGCATCATT+TGG | 0.333506 | 7.2:+7540063 | None:intergenic |
| GAAGAAAGCAAGATTCATTA+AGG | 0.337950 | 7.2:-7541442 | MS.gene23090:CDS |
| CGGTGGAGGTTCCCGCCATC+TGG | 0.342807 | 7.2:+7541646 | None:intergenic |
| GTCATTCAATTCTTCACCTT+GGG | 0.347976 | 7.2:+7540094 | None:intergenic |
| CTGTTGCTCTCCCTTGCTCT+TGG | 0.369883 | 7.2:+7540228 | None:intergenic |
| GAAGAATTTGAAAGATTCAA+TGG | 0.398160 | 7.2:-7541310 | MS.gene23090:CDS |
| TGCTCTCCCTTGCTCTTGGA+TGG | 0.409592 | 7.2:+7540232 | None:intergenic |
| GAGTTTGCCTGATTGTGGAC+CGG | 0.420074 | 7.2:-7541379 | MS.gene23090:CDS |
| TTGTGGACCGGGTTCATCTT+CGG | 0.423936 | 7.2:-7541367 | MS.gene23090:CDS |
| ACACGGTTGGCGGTGGTGAG+TGG | 0.436352 | 7.2:-7541339 | MS.gene23090:CDS |
| TCACCGCTTGAGCGCTGTGT+AGG | 0.436687 | 7.2:+7541508 | None:intergenic |
| GATGAACCCGGTCCACAATC+AGG | 0.439006 | 7.2:+7541372 | None:intergenic |
| TGGCGGTGGTGAGTGGGTTG+AGG | 0.460203 | 7.2:-7541332 | MS.gene23090:CDS |
| TGCGGTTGGAGTCGCTTGAC+CGG | 0.475517 | 7.2:-7541419 | MS.gene23090:CDS |
| AGCCGGAGTTTGCCTGATTG+TGG | 0.475796 | 7.2:-7541384 | MS.gene23090:CDS |
| GAAGGAGCTTCGTTCTGCTA+TGG | 0.477536 | 7.2:-7541487 | MS.gene23090:CDS |
| GGTTTGCGCCGGTGCGGTGG+AGG | 0.478958 | 7.2:+7541632 | None:intergenic |
| TCCGGCTCGCTTCGTTAGAC+CGG | 0.489876 | 7.2:+7541400 | None:intergenic |
| AGTATAAAGAGACGGTGAAA+CGG | 0.492429 | 7.2:-7541251 | MS.gene23090:CDS |
| CACGGTTGGCGGTGGTGAGT+GGG | 0.493974 | 7.2:-7541338 | MS.gene23090:CDS |
| CACCGCTTGAGCGCTGTGTA+GGG | 0.497930 | 7.2:+7541509 | None:intergenic |
| AGTTTGCCTGATTGTGGACC+GGG | 0.499061 | 7.2:-7541378 | MS.gene23090:CDS |
| TAGGGTTTGCGCCGGTGCGG+TGG | 0.506685 | 7.2:+7541629 | None:intergenic |
| TGTCATTCAATTCTTCACCT+TGG | 0.506888 | 7.2:+7540093 | None:intergenic |
| TTCGGATCGAACACGGTTGG+CGG | 0.516136 | 7.2:-7541349 | MS.gene23090:CDS |
| CTTTGCTGTTAATGGAGAGA+AGG | 0.520933 | 7.2:-7541223 | MS.gene23090:CDS |
| GCAAGGGAGAGCAACAGTGA+TGG | 0.529764 | 7.2:-7540222 | MS.gene23090:CDS |
| ACACAGCGCTCAAGCGGTGA+AGG | 0.532522 | 7.2:-7541505 | MS.gene23090:CDS |
| TCATCAAGTGTTTCTGGACA+TGG | 0.537223 | 7.2:-7540132 | MS.gene23090:CDS |
| ATCAAACATTAATCAAAACT+TGG | 0.539557 | 7.2:-7539837 | MS.gene23090:CDS |
| GGATCGAACACGGTTGGCGG+TGG | 0.540587 | 7.2:-7541346 | MS.gene23090:CDS |
| GTTGACCTCCTCATCTCTAC+TGG | 0.541903 | 7.2:-7541186 | MS.gene23090:intron |
| GGCGGGAACCTCCACCGCAC+CGG | 0.544215 | 7.2:-7541640 | MS.gene23090:CDS |
| ATCTTCGGATCGAACACGGT+TGG | 0.547585 | 7.2:-7541352 | MS.gene23090:CDS |
| CACCACATCATCCAGATGGC+GGG | 0.553836 | 7.2:-7541657 | MS.gene23090:CDS |
| GTCCACAATCAGGCAAACTC+CGG | 0.555904 | 7.2:+7541382 | None:intergenic |
| AACCCTACACAGCGCTCAAG+CGG | 0.557100 | 7.2:-7541511 | MS.gene23090:CDS |
| ACCGGTCTAACGAAGCGAGC+CGG | 0.561733 | 7.2:-7541401 | MS.gene23090:CDS |
| AAGATTCATTAAGGTGCGGT+TGG | 0.569901 | 7.2:-7541433 | MS.gene23090:CDS |
| CAGAAAGCCATCCAAGAGCA+AGG | 0.580650 | 7.2:-7540239 | MS.gene23090:CDS |
| GTTCGATCCGAAGATGAACC+CGG | 0.588540 | 7.2:+7541360 | None:intergenic |
| CCATCTGGATGATGTGGTGG+TGG | 0.591631 | 7.2:+7541661 | None:intergenic |
| GTTCATCTTCGGATCGAACA+CGG | 0.592605 | 7.2:-7541356 | MS.gene23090:CDS |
| TTCTAGGGTTTGCGCCGGTG+CGG | 0.607568 | 7.2:+7541626 | None:intergenic |
| CCGCCATCTGGATGATGTGG+TGG | 0.620414 | 7.2:+7541658 | None:intergenic |
| GAATACCAGTAGAGATGAGG+AGG | 0.622119 | 7.2:+7541181 | None:intergenic |
| TTCCCGCCATCTGGATGATG+TGG | 0.622342 | 7.2:+7541655 | None:intergenic |
| CTTCAGAGAGATAGTAACGT+CGG | 0.627845 | 7.2:+7541461 | None:intergenic |
| CAAGAGATTGAAGAGAGACA+TGG | 0.631024 | 7.2:-7540191 | MS.gene23090:CDS |
| TATGAATACCAGTAGAGATG+AGG | 0.631967 | 7.2:+7541178 | None:intergenic |
| ATGCTAGTACAATATAGTGA+AGG | 0.633779 | 7.2:+7539786 | None:intergenic |
| CCACCACCACATCATCCAGA+TGG | 0.634703 | 7.2:-7541661 | MS.gene23090:CDS |
| AGTAGAGATGAGGAGGTCAA+CGG | 0.635845 | 7.2:+7541188 | None:intergenic |
| AGAAAGCCATCCAAGAGCAA+GGG | 0.638028 | 7.2:-7540238 | MS.gene23090:CDS |
| GTACAATATAGTGAAGGCGG+CGG | 0.639525 | 7.2:+7539792 | None:intergenic |
| GTGGTGGTGGTTGTTATCGA+CGG | 0.640688 | 7.2:+7541674 | None:intergenic |
| CCACCACATCATCCAGATGG+CGG | 0.642903 | 7.2:-7541658 | MS.gene23090:CDS |
| AAGCAAGATTCATTAAGGTG+CGG | 0.653735 | 7.2:-7541437 | MS.gene23090:CDS |
| ATCGTCGGAGTATAAAGAGA+CGG | 0.662950 | 7.2:-7541259 | MS.gene23090:CDS |
| CTAGTACAATATAGTGAAGG+CGG | 0.665769 | 7.2:+7539789 | None:intergenic |
| ACTAAGGGAGCAGATATCGT+CGG | 0.671880 | 7.2:-7541274 | MS.gene23090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAAATAGAAAAACAATA+CGG | + | chr7.2:7541116-7541135 | None:intergenic | 10.0% |
| !!! | GTTTTAAAAAATAATTAGTT+GGG | - | chr7.2:7541556-7541575 | MS.gene23090:CDS | 10.0% |
| !!! | TGTTTTAAAAAATAATTAGT+TGG | - | chr7.2:7541555-7541574 | MS.gene23090:CDS | 10.0% |
| !! | AATAATTAGGAATAGTAAAA+TGG | + | chr7.2:7541512-7541531 | None:intergenic | 15.0% |
| !! | TGAAATACTAAAATTAACTT+TGG | - | chr7.2:7540390-7540409 | MS.gene23090:intron | 15.0% |
| !!! | TAATTAATTAGTTCTCAAAA+TGG | - | chr7.2:7541585-7541604 | MS.gene23090:CDS | 15.0% |
| !!! | TATTTAACTTCTTCTTTTTA+GGG | + | chr7.2:7541000-7541019 | None:intergenic | 15.0% |
| !!! | TTATTTAACTTCTTCTTTTT+AGG | + | chr7.2:7541001-7541020 | None:intergenic | 15.0% |
| !!! | TTTTGTATATACAAAGTTTT+AGG | + | chr7.2:7540830-7540849 | None:intergenic | 15.0% |
| !! | AAGTTGTATTAATACTATGA+TGG | - | chr7.2:7541184-7541203 | MS.gene23090:intron | 20.0% |
| !! | ATCAAACATTAATCAAAACT+TGG | - | chr7.2:7541637-7541656 | MS.gene23090:CDS | 20.0% |
| !! | ATCTTCATAATTAATTGAGT+TGG | - | chr7.2:7540454-7540473 | MS.gene23090:intron | 20.0% |
| !! | TCATCTCTTAAAAGTTAAAT+AGG | - | chr7.2:7540971-7540990 | MS.gene23090:intron | 20.0% |
| !! | TTATAACCAAAGCAATAATT+AGG | + | chr7.2:7541525-7541544 | None:intergenic | 20.0% |
| !! | TTATATTTAGTTGTTCCTTA+CGG | - | chr7.2:7540867-7540886 | MS.gene23090:intron | 20.0% |
| !!! | ATTTAACTTCTTCTTTTTAG+GGG | + | chr7.2:7540999-7541018 | None:intergenic | 20.0% |
| !!! | TAGTGTTTTAATATCATGTA+CGG | + | chr7.2:7540914-7540933 | None:intergenic | 20.0% |
| !!! | TATTTTTTAAAACAATAGGG+AGG | + | chr7.2:7541549-7541568 | None:intergenic | 20.0% |
| !!! | TTGCTACTTATTGTTAATAT+TGG | - | chr7.2:7540561-7540580 | MS.gene23090:intron | 20.0% |
| ! | ACTATTCCTAATTATTGCTT+TGG | - | chr7.2:7541516-7541535 | MS.gene23090:CDS | 25.0% |
| ! | GAAGAATTTGAAAGATTCAA+TGG | - | chr7.2:7540164-7540183 | MS.gene23090:CDS | 25.0% |
| ! | TTGTATTAATACTATGATGG+TGG | - | chr7.2:7541187-7541206 | MS.gene23090:CDS | 25.0% |
| ! | TTGTTTGCTTATTACGTTAA+TGG | - | chr7.2:7541052-7541071 | MS.gene23090:intron | 25.0% |
| !! | TTAATTAGTTCTCAAAATGG+TGG | - | chr7.2:7541588-7541607 | MS.gene23090:CDS | 25.0% |
| !! | TTCTTGGAAGAATTTTTCTA+GGG | + | chr7.2:7539866-7539885 | None:intergenic | 25.0% |
| !!! | AATTAATTGAGTTGGAATCT+AGG | - | chr7.2:7540462-7540481 | MS.gene23090:intron | 25.0% |
| !!! | ATATACAAAGTTTTAGGTCA+AGG | + | chr7.2:7540824-7540843 | None:intergenic | 25.0% |
| !!! | ATTAATTGAGTTGGAATCTA+GGG | - | chr7.2:7540463-7540482 | MS.gene23090:intron | 25.0% |
| !!! | TAGTTTTTTTTTCTTTGCCA+GGG | + | chr7.2:7540538-7540557 | None:intergenic | 25.0% |
| !!! | TTAGTTTTTTTTTCTTTGCC+AGG | + | chr7.2:7540539-7540558 | None:intergenic | 25.0% |
| AAACAATACGGTGATTGTTA+CGG | + | chr7.2:7541104-7541123 | None:intergenic | 30.0% | |
| AATACAACTTTCCATGCATT+AGG | + | chr7.2:7541174-7541193 | None:intergenic | 30.0% | |
| AGAAAAATTCTTCCAAGAAG+TGG | - | chr7.2:7539867-7539886 | MS.gene23090:intron | 30.0% | |
| AGAAAAGAGAAATTACGTAG+AGG | + | chr7.2:7541149-7541168 | None:intergenic | 30.0% | |
| ATCAAAAGAATACCCGTAAA+TGG | - | chr7.2:7541476-7541495 | MS.gene23090:CDS | 30.0% | |
| ATGCTAGTACAATATAGTGA+AGG | + | chr7.2:7541691-7541710 | None:intergenic | 30.0% | |
| GAAGAAAGCAAGATTCATTA+AGG | - | chr7.2:7540032-7540051 | MS.gene23090:intron | 30.0% | |
| TACAACAATTACATGTTGCT+AGG | - | chr7.2:7541449-7541468 | MS.gene23090:CDS | 30.0% | |
| TCTACTAGAAATCCAACATA+TGG | + | chr7.2:7540646-7540665 | None:intergenic | 30.0% | |
| ! | CTTCTTGGAAGAATTTTTCT+AGG | + | chr7.2:7539867-7539886 | None:intergenic | 30.0% |
| !! | ATATGTTGGATTTCTAGTAG+AGG | - | chr7.2:7540645-7540664 | MS.gene23090:intron | 30.0% |
| !! | GATTCAATGGAGAGTTTTAA+TGG | - | chr7.2:7540177-7540196 | MS.gene23090:CDS | 30.0% |
| AAGCAAGATTCATTAAGGTG+CGG | - | chr7.2:7540037-7540056 | MS.gene23090:intron | 35.0% | |
| AGTATAAAGAGACGGTGAAA+CGG | - | chr7.2:7540223-7540242 | MS.gene23090:CDS | 35.0% | |
| CTAGTACAATATAGTGAAGG+CGG | + | chr7.2:7541688-7541707 | None:intergenic | 35.0% | |
| GTCATTCAATTCTTCACCTT+GGG | + | chr7.2:7541383-7541402 | None:intergenic | 35.0% | |
| TATGAATACCAGTAGAGATG+AGG | + | chr7.2:7540299-7540318 | None:intergenic | 35.0% | |
| TGGCAAAACATGTCCATTTA+CGG | + | chr7.2:7541492-7541511 | None:intergenic | 35.0% | |
| TGTCATTCAATTCTTCACCT+TGG | + | chr7.2:7541384-7541403 | None:intergenic | 35.0% | |
| TTAGTTGTTCCTTACGGTTA+GGG | - | chr7.2:7540873-7540892 | MS.gene23090:intron | 35.0% | |
| TTTAGTTGTTCCTTACGGTT+AGG | - | chr7.2:7540872-7540891 | MS.gene23090:intron | 35.0% | |
| ! | CTCTTTTCTTACCTAATGCA+TGG | - | chr7.2:7541160-7541179 | MS.gene23090:intron | 35.0% |
| ! | TCTTTTCGTGTGAGTTTTTG+AGG | + | chr7.2:7539939-7539958 | None:intergenic | 35.0% |
| !! | TAATACTATGATGGTGGATC+AGG | - | chr7.2:7541193-7541212 | MS.gene23090:CDS | 35.0% |
| !! | TATGGCTAGCTTGGTTAATT+TGG | + | chr7.2:7540628-7540647 | None:intergenic | 35.0% |
| !!! | GGAGAGTTTTAATGGACTAA+GGG | - | chr7.2:7540185-7540204 | MS.gene23090:CDS | 35.0% |
| !!! | TGGAGAGTTTTAATGGACTA+AGG | - | chr7.2:7540184-7540203 | MS.gene23090:CDS | 35.0% |
| AAGATTCATTAAGGTGCGGT+TGG | - | chr7.2:7540041-7540060 | MS.gene23090:intron | 40.0% | |
| ACAACAACAATTCAACCGTG+TGG | + | chr7.2:7540757-7540776 | None:intergenic | 40.0% | |
| AGAGCTTCATCAAGTGTTTC+TGG | - | chr7.2:7541336-7541355 | MS.gene23090:CDS | 40.0% | |
| ATCGTCGGAGTATAAAGAGA+CGG | - | chr7.2:7540215-7540234 | MS.gene23090:CDS | 40.0% | |
| CAAGAGATTGAAGAGAGACA+TGG | - | chr7.2:7541283-7541302 | MS.gene23090:CDS | 40.0% | |
| CGAGCAAATTCGTATGTTAG+GGG | - | chr7.2:7541421-7541440 | MS.gene23090:CDS | 40.0% | |
| CTTCAGAGAGATAGTAACGT+CGG | + | chr7.2:7540016-7540035 | None:intergenic | 40.0% | |
| GATGATCAAACGTTAAACCC+TGG | - | chr7.2:7540518-7540537 | MS.gene23090:intron | 40.0% | |
| GCGAGCAAATTCGTATGTTA+GGG | - | chr7.2:7541420-7541439 | MS.gene23090:CDS | 40.0% | |
| GGCAAAACATGTCCATTTAC+GGG | + | chr7.2:7541491-7541510 | None:intergenic | 40.0% | |
| TAACCAAGCTAGCCATATGT+TGG | - | chr7.2:7540631-7540650 | MS.gene23090:intron | 40.0% | |
| TGCGAGCAAATTCGTATGTT+AGG | - | chr7.2:7541419-7541438 | MS.gene23090:CDS | 40.0% | |
| ! | AATCCAACATATGGCTAGCT+TGG | + | chr7.2:7540637-7540656 | None:intergenic | 40.0% |
| ! | ACGAATTTGCTCGCATCATT+TGG | + | chr7.2:7541414-7541433 | None:intergenic | 40.0% |
| !! | CGGAGATACTTTGCTGTTAA+TGG | - | chr7.2:7540243-7540262 | MS.gene23090:CDS | 40.0% |
| !! | CTTTGCTGTTAATGGAGAGA+AGG | - | chr7.2:7540251-7540270 | MS.gene23090:CDS | 40.0% |
| !! | TCATCAAGTGTTTCTGGACA+TGG | - | chr7.2:7541342-7541361 | MS.gene23090:CDS | 40.0% |
| !!! | AATTTTTCTAGGGTTTGCGC+CGG | + | chr7.2:7539856-7539875 | None:intergenic | 40.0% |
| ACTAAGGGAGCAGATATCGT+CGG | - | chr7.2:7540200-7540219 | MS.gene23090:CDS | 45.0% | |
| AGAAAGCCATCCAAGAGCAA+GGG | - | chr7.2:7541236-7541255 | MS.gene23090:CDS | 45.0% | |
| AGTAGAGATGAGGAGGTCAA+CGG | + | chr7.2:7540289-7540308 | None:intergenic | 45.0% | |
| GAATACCAGTAGAGATGAGG+AGG | + | chr7.2:7540296-7540315 | None:intergenic | 45.0% | |
| GCAAATTCGTATGTTAGGGG+AGG | - | chr7.2:7541424-7541443 | MS.gene23090:CDS | 45.0% | |
| GTACAATATAGTGAAGGCGG+CGG | + | chr7.2:7541685-7541704 | None:intergenic | 45.0% | |
| GTTCATCTTCGGATCGAACA+CGG | - | chr7.2:7540118-7540137 | MS.gene23090:CDS | 45.0% | |
| GTTGCTAGCTACAACAGTTG+TGG | - | chr7.2:7540667-7540686 | MS.gene23090:intron | 45.0% | |
| TCAATTCTTCACCTTGGGCT+TGG | + | chr7.2:7541378-7541397 | None:intergenic | 45.0% | |
| ! | CTTTTAGCGACTCCACTTCT+TGG | + | chr7.2:7539882-7539901 | None:intergenic | 45.0% |
| !! | GTTTCTGGACATGGCAGTTT+TGG | - | chr7.2:7541351-7541370 | MS.gene23090:CDS | 45.0% |
| !!! | AGTTTTTGAGGCTTGTGTGG+AGG | + | chr7.2:7539927-7539946 | None:intergenic | 45.0% |
| !!! | GTGAGTTTTTGAGGCTTGTG+TGG | + | chr7.2:7539930-7539949 | None:intergenic | 45.0% |
| !! | ATAAAATAAAACTATAAAAT+TGG | - | chr7.2:7540416-7540435 | MS.gene23090:intron | 5.0% |
| !!! | AATTATTTTTTAAAACAATA+GGG | + | chr7.2:7541552-7541571 | None:intergenic | 5.0% |
| !!! | TAATTATTTTTTAAAACAAT+AGG | + | chr7.2:7541553-7541572 | None:intergenic | 5.0% |
| ACAATTCAACCGTGTGGCTG+AGG | + | chr7.2:7540751-7540770 | None:intergenic | 50.0% | |
| AGTTTGCCTGATTGTGGACC+GGG | - | chr7.2:7540096-7540115 | MS.gene23090:CDS | 50.0% | |
| ATCTTCGGATCGAACACGGT+TGG | - | chr7.2:7540122-7540141 | MS.gene23090:CDS | 50.0% | |
| CAAAATGGTGGCTGCTGTGA+AGG | - | chr7.2:7541600-7541619 | MS.gene23090:CDS | 50.0% | |
| CAGAAAGCCATCCAAGAGCA+AGG | - | chr7.2:7541235-7541254 | MS.gene23090:CDS | 50.0% | |
| GAAGGAGCTTCGTTCTGCTA+TGG | - | chr7.2:7539987-7540006 | MS.gene23090:intron | 50.0% | |
| GAGTTTGCCTGATTGTGGAC+CGG | - | chr7.2:7540095-7540114 | MS.gene23090:CDS | 50.0% | |
| GATGTCACACCCTAACCGTA+AGG | + | chr7.2:7540885-7540904 | None:intergenic | 50.0% | |
| GGTTAGGGTGTGACATCATG+TGG | - | chr7.2:7540888-7540907 | MS.gene23090:intron | 50.0% | |
| GTCCACAATCAGGCAAACTC+CGG | + | chr7.2:7540095-7540114 | None:intergenic | 50.0% | |
| GTTCGATCCGAAGATGAACC+CGG | + | chr7.2:7540117-7540136 | None:intergenic | 50.0% | |
| GTTGACCTCCTCATCTCTAC+TGG | - | chr7.2:7540288-7540307 | MS.gene23090:intron | 50.0% | |
| TTGTGGACCGGGTTCATCTT+CGG | - | chr7.2:7540107-7540126 | MS.gene23090:CDS | 50.0% | |
| !! | GTGGTGGTGGTTGTTATCGA+CGG | + | chr7.2:7539803-7539822 | None:intergenic | 50.0% |
| AACCCTACACAGCGCTCAAG+CGG | - | chr7.2:7539963-7539982 | MS.gene23090:intron | 55.0% | |
| AGCCGGAGTTTGCCTGATTG+TGG | - | chr7.2:7540090-7540109 | MS.gene23090:CDS | 55.0% | |
| CACCACATCATCCAGATGGC+GGG | - | chr7.2:7539817-7539836 | MS.gene23090:CDS | 55.0% | |
| CCACCACATCATCCAGATGG+CGG | - | chr7.2:7539816-7539835 | MS.gene23090:CDS | 55.0% | |
| CCACCACCACATCATCCAGA+TGG | - | chr7.2:7539813-7539832 | MS.gene23090:CDS | 55.0% | |
| CCATCTGGATGATGTGGTGG+TGG | + | chr7.2:7539816-7539835 | None:intergenic | 55.0% | |
| CTGTTGCTCTCCCTTGCTCT+TGG | + | chr7.2:7541249-7541268 | None:intergenic | 55.0% | |
| GATGAACCCGGTCCACAATC+AGG | + | chr7.2:7540105-7540124 | None:intergenic | 55.0% | |
| GCAAGGGAGAGCAACAGTGA+TGG | - | chr7.2:7541252-7541271 | MS.gene23090:CDS | 55.0% | |
| TGCTCTCCCTTGCTCTTGGA+TGG | + | chr7.2:7541245-7541264 | None:intergenic | 55.0% | |
| TTCCCGCCATCTGGATGATG+TGG | + | chr7.2:7539822-7539841 | None:intergenic | 55.0% | |
| TTCGGATCGAACACGGTTGG+CGG | - | chr7.2:7540125-7540144 | MS.gene23090:CDS | 55.0% | |
| !! | GCAGTTTTGGTCCAAGCCCA+AGG | - | chr7.2:7541364-7541383 | MS.gene23090:CDS | 55.0% |
| ACACAGCGCTCAAGCGGTGA+AGG | - | chr7.2:7539969-7539988 | MS.gene23090:intron | 60.0% | |
| ACCGGTCTAACGAAGCGAGC+CGG | - | chr7.2:7540073-7540092 | MS.gene23090:CDS | 60.0% | |
| CCGCCATCTGGATGATGTGG+TGG | + | chr7.2:7539819-7539838 | None:intergenic | 60.0% | |
| TGCGGTTGGAGTCGCTTGAC+CGG | - | chr7.2:7540055-7540074 | MS.gene23090:intron | 60.0% | |
| ! | CACCGCTTGAGCGCTGTGTA+GGG | + | chr7.2:7539968-7539987 | None:intergenic | 60.0% |
| ! | TCACCGCTTGAGCGCTGTGT+AGG | + | chr7.2:7539969-7539988 | None:intergenic | 60.0% |
| ! | TCCGGCTCGCTTCGTTAGAC+CGG | + | chr7.2:7540077-7540096 | None:intergenic | 60.0% |
| !! | TTCTAGGGTTTGCGCCGGTG+CGG | + | chr7.2:7539851-7539870 | None:intergenic | 60.0% |
| ACACGGTTGGCGGTGGTGAG+TGG | - | chr7.2:7540135-7540154 | MS.gene23090:CDS | 65.0% | |
| CACGGTTGGCGGTGGTGAGT+GGG | - | chr7.2:7540136-7540155 | MS.gene23090:CDS | 65.0% | |
| GGATCGAACACGGTTGGCGG+TGG | - | chr7.2:7540128-7540147 | MS.gene23090:CDS | 65.0% | |
| GTGGCGCAGCATCGCGATCT+TGG | - | chr7.2:7540686-7540705 | MS.gene23090:intron | 65.0% | |
| !! | TGGCGGTGGTGAGTGGGTTG+AGG | - | chr7.2:7540142-7540161 | MS.gene23090:CDS | 65.0% |
| CCGACGCAGCCTCAGCCACA+CGG | - | chr7.2:7540739-7540758 | MS.gene23090:intron | 70.0% | |
| CCGTGTGGCTGAGGCTGCGT+CGG | + | chr7.2:7540742-7540761 | None:intergenic | 70.0% | |
| CGGTGGAGGTTCCCGCCATC+TGG | + | chr7.2:7539831-7539850 | None:intergenic | 70.0% | |
| ! | TAGGGTTTGCGCCGGTGCGG+TGG | + | chr7.2:7539848-7539867 | None:intergenic | 70.0% |
| GGCGGGAACCTCCACCGCAC+CGG | - | chr7.2:7539834-7539853 | MS.gene23090:CDS | 75.0% | |
| ! | GGTTTGCGCCGGTGCGGTGG+AGG | + | chr7.2:7539845-7539864 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 7539784 | 7541712 | 7539784 | ID=MS.gene23090 |
| chr7.2 | mRNA | 7539784 | 7541712 | 7539784 | ID=MS.gene23090.t1;Parent=MS.gene23090 |
| chr7.2 | exon | 7541187 | 7541712 | 7541187 | ID=MS.gene23090.t1.exon1;Parent=MS.gene23090.t1 |
| chr7.2 | CDS | 7541187 | 7541712 | 7541187 | ID=cds.MS.gene23090.t1;Parent=MS.gene23090.t1 |
| chr7.2 | exon | 7540065 | 7540281 | 7540065 | ID=MS.gene23090.t1.exon2;Parent=MS.gene23090.t1 |
| chr7.2 | CDS | 7540065 | 7540281 | 7540065 | ID=cds.MS.gene23090.t1;Parent=MS.gene23090.t1 |
| chr7.2 | exon | 7539784 | 7539874 | 7539784 | ID=MS.gene23090.t1.exon3;Parent=MS.gene23090.t1 |
| chr7.2 | CDS | 7539784 | 7539874 | 7539784 | ID=cds.MS.gene23090.t1;Parent=MS.gene23090.t1 |
| Gene Sequence |
| Protein sequence |
