Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54303.t1 | XP_013462554.1 | 87.6 | 161 | 19 | 1 | 1 | 160 | 1 | 161 | 5.50E-74 | 287 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54303.t1 | P68350 | 96.5 | 57 | 2 | 0 | 45 | 101 | 61 | 117 | 2.7e-29 | 129.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54303.t1 | A0A072V3I5 | 87.6 | 161 | 19 | 1 | 1 | 160 | 1 | 161 | 4.0e-74 | 287.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene54303.t1 | TF | C2C2-Dof |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene54303 | -0.830923 | 2.23E-55 | -1.69E-46 |
| MS.gene049222 | MS.gene54303 | -0.818085 | 2.36E-52 | -1.69E-46 |
| MS.gene049232 | MS.gene54303 | -0.827967 | 1.17E-54 | -1.69E-46 |
| MS.gene049281 | MS.gene54303 | 0.835286 | 1.83E-56 | -1.69E-46 |
| MS.gene049285 | MS.gene54303 | -0.819726 | 9.98E-53 | -1.69E-46 |
| MS.gene049312 | MS.gene54303 | 0.806264 | 8.95E-50 | -1.69E-46 |
| MS.gene049320 | MS.gene54303 | -0.830704 | 2.53E-55 | -1.69E-46 |
| MS.gene049611 | MS.gene54303 | 0.801181 | 1.02E-48 | -1.69E-46 |
| MS.gene049627 | MS.gene54303 | -0.82179 | 3.35E-53 | -1.69E-46 |
| MS.gene049865 | MS.gene54303 | -0.803594 | 3.24E-49 | -1.69E-46 |
| MS.gene05010 | MS.gene54303 | -0.819372 | 1.20E-52 | -1.69E-46 |
| MS.gene050163 | MS.gene54303 | -0.804663 | 1.94E-49 | -1.69E-46 |
| MS.gene050165 | MS.gene54303 | -0.812519 | 4.07E-51 | -1.69E-46 |
| MS.gene050170 | MS.gene54303 | -0.845803 | 3.23E-59 | -1.69E-46 |
| MS.gene050323 | MS.gene54303 | -0.808422 | 3.12E-50 | -1.69E-46 |
| MS.gene050333 | MS.gene54303 | -0.802019 | 6.84E-49 | -1.69E-46 |
| MS.gene050381 | MS.gene54303 | 0.823271 | 1.51E-53 | -1.69E-46 |
| MS.gene050496 | MS.gene54303 | -0.836466 | 9.20E-57 | -1.69E-46 |
| MS.gene050504 | MS.gene54303 | -0.854918 | 8.94E-62 | -1.69E-46 |
| MS.gene050518 | MS.gene54303 | -0.817349 | 3.45E-52 | -1.69E-46 |
| MS.gene050577 | MS.gene54303 | -0.825535 | 4.45E-54 | -1.69E-46 |
| MS.gene050612 | MS.gene54303 | -0.831434 | 1.67E-55 | -1.69E-46 |
| MS.gene050675 | MS.gene54303 | -0.807047 | 6.12E-50 | -1.69E-46 |
| MS.gene050699 | MS.gene54303 | -0.825352 | 4.91E-54 | -1.69E-46 |
| MS.gene050868 | MS.gene54303 | -0.817748 | 2.81E-52 | -1.69E-46 |
| MS.gene050871 | MS.gene54303 | -0.815428 | 9.29E-52 | -1.69E-46 |
| MS.gene050883 | MS.gene54303 | 0.887426 | 1.44E-72 | -1.69E-46 |
| MS.gene050904 | MS.gene54303 | -0.807344 | 5.29E-50 | -1.69E-46 |
| MS.gene050986 | MS.gene54303 | -0.831775 | 1.38E-55 | -1.69E-46 |
| MS.gene051127 | MS.gene54303 | 0.842019 | 3.34E-58 | -1.69E-46 |
| MS.gene051317 | MS.gene54303 | -0.810441 | 1.15E-50 | -1.69E-46 |
| MS.gene051364 | MS.gene54303 | 0.87288 | 2.26E-67 | -1.69E-46 |
| MS.gene051366 | MS.gene54303 | 0.858601 | 7.37E-63 | -1.69E-46 |
| MS.gene051367 | MS.gene54303 | 0.860304 | 2.27E-63 | -1.69E-46 |
| MS.gene051410 | MS.gene54303 | 0.803397 | 3.55E-49 | -1.69E-46 |
| MS.gene051946 | MS.gene54303 | 0.827071 | 1.92E-54 | -1.69E-46 |
| MS.gene052164 | MS.gene54303 | -0.807903 | 4.03E-50 | -1.69E-46 |
| MS.gene052478 | MS.gene54303 | 0.816055 | 6.74E-52 | -1.69E-46 |
| MS.gene052482 | MS.gene54303 | -0.851402 | 9.08E-61 | -1.69E-46 |
| MS.gene052486 | MS.gene54303 | -0.861857 | 7.64E-64 | -1.69E-46 |
| MS.gene052503 | MS.gene54303 | -0.809177 | 2.15E-50 | -1.69E-46 |
| MS.gene052823 | MS.gene54303 | -0.812907 | 3.35E-51 | -1.69E-46 |
| MS.gene052825 | MS.gene54303 | -0.805977 | 1.03E-49 | -1.69E-46 |
| MS.gene052966 | MS.gene54303 | -0.809995 | 1.44E-50 | -1.69E-46 |
| MS.gene053083 | MS.gene54303 | 0.804569 | 2.03E-49 | -1.69E-46 |
| MS.gene053203 | MS.gene54303 | -0.838642 | 2.55E-57 | -1.69E-46 |
| MS.gene053213 | MS.gene54303 | -0.800007 | 1.76E-48 | -1.69E-46 |
| MS.gene053420 | MS.gene54303 | 0.843651 | 1.23E-58 | -1.69E-46 |
| MS.gene053549 | MS.gene54303 | 0.853453 | 2.37E-61 | -1.69E-46 |
| MS.gene053826 | MS.gene54303 | 0.827685 | 1.36E-54 | -1.69E-46 |
| MS.gene054707 | MS.gene54303 | 0.810107 | 1.36E-50 | -1.69E-46 |
| MS.gene054708 | MS.gene54303 | 0.804326 | 2.28E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene54303 | -0.843984 | 1.00E-58 | -1.69E-46 |
| MS.gene054954 | MS.gene54303 | -0.835798 | 1.36E-56 | -1.69E-46 |
| MS.gene054959 | MS.gene54303 | 0.814752 | 1.31E-51 | -1.69E-46 |
| MS.gene055154 | MS.gene54303 | 0.838756 | 2.38E-57 | -1.69E-46 |
| MS.gene055202 | MS.gene54303 | 0.817354 | 3.44E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene54303 | -0.839806 | 1.27E-57 | -1.69E-46 |
| MS.gene055502 | MS.gene54303 | -0.842822 | 2.04E-58 | -1.69E-46 |
| MS.gene055577 | MS.gene54303 | -0.823759 | 1.17E-53 | -1.69E-46 |
| MS.gene055751 | MS.gene54303 | -0.803823 | 2.90E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene54303 | -0.859169 | 4.98E-63 | -1.69E-46 |
| MS.gene056310 | MS.gene54303 | 0.810482 | 1.13E-50 | -1.69E-46 |
| MS.gene056311 | MS.gene54303 | 0.858086 | 1.05E-62 | -1.69E-46 |
| MS.gene056504 | MS.gene54303 | -0.869145 | 3.86E-66 | -1.69E-46 |
| MS.gene056510 | MS.gene54303 | -0.80691 | 6.54E-50 | -1.69E-46 |
| MS.gene056530 | MS.gene54303 | 0.802968 | 4.36E-49 | -1.69E-46 |
| MS.gene056550 | MS.gene54303 | 0.82517 | 5.42E-54 | -1.69E-46 |
| MS.gene056657 | MS.gene54303 | -0.810711 | 1.01E-50 | -1.69E-46 |
| MS.gene056692 | MS.gene54303 | -0.838068 | 3.58E-57 | -1.69E-46 |
| MS.gene057014 | MS.gene54303 | 0.846515 | 2.07E-59 | -1.69E-46 |
| MS.gene057499 | MS.gene54303 | 0.851417 | 9.00E-61 | -1.69E-46 |
| MS.gene057831 | MS.gene54303 | -0.800036 | 1.74E-48 | -1.69E-46 |
| MS.gene058068 | MS.gene54303 | 0.810004 | 1.43E-50 | -1.69E-46 |
| MS.gene058109 | MS.gene54303 | 0.820438 | 6.86E-53 | -1.69E-46 |
| MS.gene058111 | MS.gene54303 | 0.88118 | 2.97E-70 | -1.69E-46 |
| MS.gene058157 | MS.gene54303 | -0.815315 | 9.85E-52 | -1.69E-46 |
| MS.gene058171 | MS.gene54303 | 0.846836 | 1.69E-59 | -1.69E-46 |
| MS.gene058173 | MS.gene54303 | 0.83613 | 1.12E-56 | -1.69E-46 |
| MS.gene058175 | MS.gene54303 | 0.847597 | 1.05E-59 | -1.69E-46 |
| MS.gene058268 | MS.gene54303 | 0.811113 | 8.24E-51 | -1.69E-46 |
| MS.gene058334 | MS.gene54303 | 0.821745 | 3.43E-53 | -1.69E-46 |
| MS.gene05837 | MS.gene54303 | -0.840824 | 6.89E-58 | -1.69E-46 |
| MS.gene058419 | MS.gene54303 | -0.824635 | 7.25E-54 | -1.69E-46 |
| MS.gene058493 | MS.gene54303 | 0.852544 | 4.31E-61 | -1.69E-46 |
| MS.gene058494 | MS.gene54303 | 0.847306 | 1.26E-59 | -1.69E-46 |
| MS.gene058544 | MS.gene54303 | -0.817984 | 2.48E-52 | -1.69E-46 |
| MS.gene058628 | MS.gene54303 | 0.812248 | 4.66E-51 | -1.69E-46 |
| MS.gene058630 | MS.gene54303 | 0.80273 | 4.88E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene54303 | -0.826977 | 2.02E-54 | -1.69E-46 |
| MS.gene059022 | MS.gene54303 | -0.854416 | 1.25E-61 | -1.69E-46 |
| MS.gene059023 | MS.gene54303 | -0.835311 | 1.81E-56 | -1.69E-46 |
| MS.gene059052 | MS.gene54303 | 0.80796 | 3.92E-50 | -1.69E-46 |
| MS.gene059236 | MS.gene54303 | 0.801779 | 7.66E-49 | -1.69E-46 |
| MS.gene059677 | MS.gene54303 | -0.829594 | 4.72E-55 | -1.69E-46 |
| MS.gene059718 | MS.gene54303 | -0.818531 | 1.87E-52 | -1.69E-46 |
| MS.gene059756 | MS.gene54303 | -0.805132 | 1.55E-49 | -1.69E-46 |
| MS.gene059837 | MS.gene54303 | -0.817785 | 2.75E-52 | -1.69E-46 |
| MS.gene059865 | MS.gene54303 | -0.839541 | 1.49E-57 | -1.69E-46 |
| MS.gene060187 | MS.gene54303 | 0.837414 | 5.27E-57 | -1.69E-46 |
| MS.gene060595 | MS.gene54303 | 0.868887 | 4.67E-66 | -1.69E-46 |
| MS.gene060703 | MS.gene54303 | -0.831749 | 1.40E-55 | -1.69E-46 |
| MS.gene060762 | MS.gene54303 | -0.84719 | 1.35E-59 | -1.69E-46 |
| MS.gene060778 | MS.gene54303 | -0.819463 | 1.15E-52 | -1.69E-46 |
| MS.gene06077 | MS.gene54303 | -0.885174 | 1.02E-71 | -1.69E-46 |
| MS.gene060823 | MS.gene54303 | 0.819438 | 1.16E-52 | -1.69E-46 |
| MS.gene060982 | MS.gene54303 | -0.838533 | 2.72E-57 | -1.69E-46 |
| MS.gene061044 | MS.gene54303 | 0.814734 | 1.33E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54303.t1 | MTR_2g016030 | 96.894 | 161 | 4 | 1 | 1 | 160 | 1 | 161 | 4.60e-114 | 320 |
| MS.gene54303.t1 | MTR_6g012450 | 70.370 | 81 | 23 | 1 | 19 | 99 | 110 | 189 | 1.62e-36 | 131 |
| MS.gene54303.t1 | MTR_4g082060 | 67.500 | 80 | 26 | 0 | 20 | 99 | 96 | 175 | 1.73e-35 | 128 |
| MS.gene54303.t1 | MTR_7g010950 | 71.053 | 76 | 21 | 1 | 24 | 99 | 114 | 188 | 5.50e-35 | 127 |
| MS.gene54303.t1 | MTR_8g044220 | 61.628 | 86 | 32 | 1 | 25 | 109 | 96 | 181 | 1.26e-34 | 125 |
| MS.gene54303.t1 | MTR_7g086780 | 71.233 | 73 | 20 | 1 | 28 | 99 | 80 | 152 | 6.41e-33 | 120 |
| MS.gene54303.t1 | MTR_5g041380 | 58.065 | 93 | 37 | 1 | 18 | 108 | 97 | 189 | 3.84e-32 | 117 |
| MS.gene54303.t1 | MTR_6g027460 | 73.239 | 71 | 18 | 1 | 30 | 99 | 79 | 149 | 5.75e-32 | 117 |
| MS.gene54303.t1 | MTR_3g435480 | 57.778 | 90 | 29 | 1 | 19 | 99 | 100 | 189 | 6.51e-31 | 115 |
| MS.gene54303.t1 | MTR_5g041530 | 70.423 | 71 | 18 | 1 | 32 | 99 | 123 | 193 | 1.54e-30 | 114 |
| MS.gene54303.t1 | MTR_6g027450 | 69.014 | 71 | 21 | 1 | 30 | 99 | 72 | 142 | 1.60e-30 | 112 |
| MS.gene54303.t1 | MTR_5g041400 | 62.338 | 77 | 29 | 0 | 32 | 108 | 105 | 181 | 4.29e-30 | 112 |
| MS.gene54303.t1 | MTR_5g041420 | 71.667 | 60 | 17 | 0 | 40 | 99 | 132 | 191 | 8.20e-30 | 110 |
| MS.gene54303.t1 | MTR_2g096740 | 55.263 | 76 | 34 | 0 | 24 | 99 | 40 | 115 | 2.09e-27 | 103 |
| MS.gene54303.t1 | MTR_2g096740 | 55.263 | 76 | 34 | 0 | 24 | 99 | 55 | 130 | 2.30e-27 | 103 |
| MS.gene54303.t1 | MTR_8g015840 | 59.155 | 71 | 23 | 1 | 34 | 98 | 2 | 72 | 3.92e-26 | 99.0 |
| MS.gene54303.t1 | MTR_8g068210 | 47.059 | 102 | 48 | 3 | 24 | 123 | 12 | 109 | 4.79e-26 | 101 |
| MS.gene54303.t1 | MTR_8g479350 | 48.000 | 100 | 41 | 2 | 48 | 138 | 70 | 167 | 9.76e-26 | 100 |
| MS.gene54303.t1 | MTR_4g022370 | 70.175 | 57 | 17 | 0 | 43 | 99 | 79 | 135 | 1.30e-25 | 100 |
| MS.gene54303.t1 | MTR_8g027295 | 56.098 | 82 | 32 | 2 | 36 | 113 | 12 | 93 | 3.53e-25 | 97.8 |
| MS.gene54303.t1 | MTR_8g079060 | 71.154 | 52 | 15 | 0 | 46 | 97 | 29 | 80 | 4.16e-25 | 96.7 |
| MS.gene54303.t1 | MTR_4g063780 | 64.286 | 70 | 24 | 1 | 43 | 111 | 72 | 141 | 1.23e-24 | 97.4 |
| MS.gene54303.t1 | MTR_2g093220 | 55.263 | 76 | 34 | 0 | 24 | 99 | 18 | 93 | 1.66e-24 | 96.3 |
| MS.gene54303.t1 | MTR_4g109980 | 69.811 | 53 | 16 | 0 | 44 | 96 | 38 | 90 | 1.70e-24 | 96.7 |
| MS.gene54303.t1 | MTR_3g091820 | 64.912 | 57 | 20 | 0 | 43 | 99 | 40 | 96 | 1.95e-24 | 96.3 |
| MS.gene54303.t1 | MTR_2g059540 | 73.469 | 49 | 13 | 0 | 46 | 94 | 31 | 79 | 2.75e-24 | 94.0 |
| MS.gene54303.t1 | MTR_7g024670 | 76.000 | 50 | 12 | 0 | 48 | 97 | 79 | 128 | 4.21e-24 | 96.7 |
| MS.gene54303.t1 | MTR_7g059400 | 68.421 | 57 | 18 | 0 | 43 | 99 | 73 | 129 | 1.01e-23 | 95.1 |
| MS.gene54303.t1 | MTR_1g077600 | 54.412 | 68 | 31 | 0 | 30 | 97 | 27 | 94 | 1.14e-23 | 93.6 |
| MS.gene54303.t1 | MTR_1g077600 | 54.412 | 68 | 31 | 0 | 30 | 97 | 27 | 94 | 1.36e-23 | 94.0 |
| MS.gene54303.t1 | MTR_4g088580 | 73.077 | 52 | 14 | 0 | 48 | 99 | 57 | 108 | 1.91e-23 | 94.7 |
| MS.gene54303.t1 | MTR_5g031440 | 68.519 | 54 | 17 | 0 | 43 | 96 | 40 | 93 | 1.97e-23 | 94.4 |
| MS.gene54303.t1 | MTR_4g089095 | 67.308 | 52 | 17 | 0 | 48 | 99 | 52 | 103 | 3.48e-23 | 92.8 |
| MS.gene54303.t1 | MTR_4g089095 | 67.308 | 52 | 17 | 0 | 48 | 99 | 18 | 69 | 4.70e-23 | 92.0 |
| MS.gene54303.t1 | MTR_4g461080 | 54.054 | 74 | 34 | 0 | 24 | 97 | 7 | 80 | 9.08e-23 | 91.7 |
| MS.gene54303.t1 | MTR_2g014060 | 52.632 | 76 | 29 | 1 | 30 | 98 | 2 | 77 | 1.11e-22 | 92.0 |
| MS.gene54303.t1 | MTR_1g056810 | 64.516 | 62 | 21 | 1 | 39 | 99 | 4 | 65 | 1.16e-22 | 91.3 |
| MS.gene54303.t1 | MTR_3g090430 | 65.517 | 58 | 20 | 0 | 42 | 99 | 47 | 104 | 1.29e-22 | 92.0 |
| MS.gene54303.t1 | MTR_2g014170 | 71.429 | 49 | 14 | 0 | 46 | 94 | 45 | 93 | 1.51e-22 | 91.3 |
| MS.gene54303.t1 | MTR_2g013370 | 41.489 | 94 | 50 | 1 | 6 | 99 | 11 | 99 | 2.11e-22 | 90.5 |
| MS.gene54303.t1 | MTR_3g077750 | 66.667 | 51 | 17 | 0 | 46 | 96 | 61 | 111 | 1.49e-21 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54303.t1 | AT1G29160 | 62.281 | 114 | 23 | 1 | 8 | 101 | 4 | 117 | 3.97e-46 | 149 |
| MS.gene54303.t1 | AT2G34140 | 63.636 | 110 | 24 | 1 | 8 | 101 | 4 | 113 | 6.40e-45 | 145 |
| MS.gene54303.t1 | AT5G62430 | 58.416 | 101 | 28 | 2 | 12 | 99 | 8 | 107 | 1.96e-35 | 125 |
| MS.gene54303.t1 | AT3G47500 | 58.252 | 103 | 43 | 0 | 20 | 122 | 84 | 186 | 4.22e-35 | 127 |
| MS.gene54303.t1 | AT5G39660 | 82.540 | 63 | 11 | 0 | 40 | 102 | 132 | 194 | 1.58e-34 | 125 |
| MS.gene54303.t1 | AT5G39660 | 82.540 | 63 | 11 | 0 | 40 | 102 | 132 | 194 | 1.58e-34 | 125 |
| MS.gene54303.t1 | AT5G39660 | 82.540 | 63 | 11 | 0 | 40 | 102 | 132 | 194 | 1.58e-34 | 125 |
| MS.gene54303.t1 | AT1G26790 | 56.311 | 103 | 38 | 1 | 23 | 125 | 88 | 183 | 3.43e-34 | 123 |
| MS.gene54303.t1 | AT1G69570 | 60.440 | 91 | 29 | 1 | 34 | 124 | 120 | 203 | 5.00e-33 | 120 |
| MS.gene54303.t1 | AT5G60850 | 57.692 | 78 | 33 | 0 | 46 | 123 | 51 | 128 | 2.69e-27 | 103 |
| MS.gene54303.t1 | AT1G51700 | 71.698 | 53 | 15 | 0 | 46 | 98 | 33 | 85 | 3.77e-26 | 98.6 |
| MS.gene54303.t1 | AT3G21270 | 76.923 | 52 | 12 | 0 | 46 | 97 | 29 | 80 | 8.52e-26 | 97.8 |
| MS.gene54303.t1 | AT2G28810 | 72.727 | 55 | 15 | 0 | 43 | 97 | 74 | 128 | 1.63e-25 | 99.8 |
| MS.gene54303.t1 | AT3G50410 | 71.698 | 53 | 15 | 0 | 46 | 98 | 30 | 82 | 2.09e-25 | 97.8 |
| MS.gene54303.t1 | AT4G38000 | 60.294 | 68 | 26 | 1 | 43 | 109 | 38 | 105 | 2.12e-25 | 97.8 |
| MS.gene54303.t1 | AT2G28810 | 72.727 | 55 | 15 | 0 | 43 | 97 | 91 | 145 | 2.63e-25 | 99.4 |
| MS.gene54303.t1 | AT2G37590 | 68.421 | 57 | 18 | 0 | 43 | 99 | 86 | 142 | 7.64e-25 | 97.8 |
| MS.gene54303.t1 | AT3G55370 | 68.421 | 57 | 18 | 0 | 43 | 99 | 73 | 129 | 7.84e-25 | 97.8 |
| MS.gene54303.t1 | AT3G55370 | 68.421 | 57 | 18 | 0 | 43 | 99 | 73 | 129 | 8.04e-25 | 98.2 |
| MS.gene54303.t1 | AT5G65590 | 68.421 | 57 | 18 | 0 | 43 | 99 | 38 | 94 | 1.16e-24 | 97.4 |
| MS.gene54303.t1 | AT3G55370 | 68.421 | 57 | 18 | 0 | 43 | 99 | 118 | 174 | 1.16e-24 | 98.2 |
| MS.gene54303.t1 | AT1G07640 | 52.500 | 80 | 38 | 0 | 18 | 97 | 49 | 128 | 2.69e-24 | 96.7 |
| MS.gene54303.t1 | AT1G07640 | 76.000 | 50 | 12 | 0 | 48 | 97 | 23 | 72 | 3.07e-24 | 95.5 |
| MS.gene54303.t1 | AT1G07640 | 52.500 | 80 | 38 | 0 | 18 | 97 | 57 | 136 | 3.30e-24 | 96.3 |
| MS.gene54303.t1 | AT5G66940 | 67.925 | 53 | 17 | 0 | 46 | 98 | 32 | 84 | 7.88e-24 | 93.2 |
| MS.gene54303.t1 | AT5G60200 | 66.667 | 57 | 19 | 0 | 43 | 99 | 52 | 108 | 1.01e-23 | 93.6 |
| MS.gene54303.t1 | AT5G02460 | 68.421 | 57 | 18 | 0 | 43 | 99 | 92 | 148 | 1.65e-23 | 95.1 |
| MS.gene54303.t1 | AT3G45610 | 52.778 | 72 | 34 | 0 | 28 | 99 | 22 | 93 | 1.93e-23 | 92.8 |
| MS.gene54303.t1 | AT4G24060 | 63.158 | 57 | 21 | 0 | 43 | 99 | 50 | 106 | 2.04e-23 | 94.4 |
| MS.gene54303.t1 | AT1G47655 | 64.815 | 54 | 19 | 0 | 41 | 94 | 24 | 77 | 3.05e-23 | 91.3 |
| MS.gene54303.t1 | AT3G52440 | 66.102 | 59 | 19 | 1 | 44 | 101 | 22 | 80 | 3.55e-23 | 92.0 |
| MS.gene54303.t1 | AT1G28310 | 68.519 | 54 | 17 | 0 | 46 | 99 | 27 | 80 | 3.69e-23 | 93.2 |
| MS.gene54303.t1 | AT3G52440 | 66.102 | 59 | 19 | 1 | 44 | 101 | 41 | 99 | 3.92e-23 | 92.4 |
| MS.gene54303.t1 | AT3G61850 | 57.812 | 64 | 27 | 0 | 36 | 99 | 52 | 115 | 3.98e-23 | 92.4 |
| MS.gene54303.t1 | AT3G61850 | 57.812 | 64 | 27 | 0 | 36 | 99 | 52 | 115 | 3.98e-23 | 92.4 |
| MS.gene54303.t1 | AT3G61850 | 57.812 | 64 | 27 | 0 | 36 | 99 | 64 | 127 | 4.45e-23 | 92.8 |
| MS.gene54303.t1 | AT1G28310 | 68.519 | 54 | 17 | 0 | 46 | 99 | 51 | 104 | 5.88e-23 | 92.8 |
| MS.gene54303.t1 | AT3G61850 | 57.812 | 64 | 27 | 0 | 36 | 99 | 52 | 115 | 6.03e-23 | 92.4 |
| MS.gene54303.t1 | AT3G61850 | 57.812 | 64 | 27 | 0 | 36 | 99 | 64 | 127 | 7.29e-23 | 92.4 |
| MS.gene54303.t1 | AT1G64620 | 65.385 | 52 | 18 | 0 | 43 | 94 | 46 | 97 | 9.91e-23 | 92.4 |
| MS.gene54303.t1 | AT2G28510 | 71.154 | 52 | 15 | 0 | 48 | 99 | 50 | 101 | 1.03e-22 | 91.7 |
| MS.gene54303.t1 | AT4G00940 | 71.154 | 52 | 15 | 0 | 48 | 99 | 70 | 121 | 1.57e-22 | 91.3 |
| MS.gene54303.t1 | AT4G00940 | 71.154 | 52 | 15 | 0 | 48 | 99 | 70 | 121 | 1.57e-22 | 91.3 |
| MS.gene54303.t1 | AT4G00940 | 71.154 | 52 | 15 | 0 | 48 | 99 | 70 | 121 | 1.57e-22 | 91.3 |
| MS.gene54303.t1 | AT1G21340 | 70.000 | 50 | 15 | 0 | 48 | 97 | 40 | 89 | 2.02e-22 | 90.1 |
| MS.gene54303.t1 | AT5G62940 | 69.388 | 49 | 15 | 0 | 48 | 96 | 75 | 123 | 1.15e-21 | 90.1 |
| MS.gene54303.t1 | AT4G21050 | 58.730 | 63 | 26 | 0 | 48 | 110 | 26 | 88 | 1.95e-21 | 86.7 |
| MS.gene54303.t1 | AT2G46590 | 68.750 | 48 | 15 | 0 | 46 | 93 | 68 | 115 | 5.17e-21 | 87.8 |
| MS.gene54303.t1 | AT2G46590 | 68.750 | 48 | 15 | 0 | 46 | 93 | 80 | 127 | 6.02e-21 | 87.8 |
| MS.gene54303.t1 | AT4G21040 | 60.000 | 60 | 20 | 1 | 48 | 103 | 27 | 86 | 2.22e-19 | 81.6 |
| MS.gene54303.t1 | AT4G21080 | 54.412 | 68 | 27 | 1 | 48 | 111 | 27 | 94 | 8.99e-19 | 80.5 |
| MS.gene54303.t1 | AT4G21030 | 45.588 | 68 | 37 | 0 | 48 | 115 | 23 | 90 | 2.10e-14 | 67.8 |
Find 45 sgRNAs with CRISPR-Local
Find 49 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACAAGGGATTAAGCTATT+TGG | 0.296201 | 2.3:+69405602 | MS.gene54303:CDS |
| GGTCTTCCTCCGCCGCTTGC+CGG | 0.325640 | 2.3:-69406002 | None:intergenic |
| GCTTCATAGACACAACTTTC+CGG | 0.327262 | 2.3:-69405899 | None:intergenic |
| GTAAGAGCTGTCAAAGATAC+TGG | 0.350596 | 2.3:+69405792 | MS.gene54303:CDS |
| ATGTCCAAGATGCAAGAGTA+TGG | 0.357770 | 2.3:+69405715 | MS.gene54303:CDS |
| GATGATGGCCATAACTACTT+AGG | 0.390058 | 2.3:+69405932 | MS.gene54303:CDS |
| GTTCTAACCCTAAGTAGTTA+TGG | 0.403963 | 2.3:-69405940 | None:intergenic |
| GTTTCCATACTCTTGCATCT+TGG | 0.414049 | 2.3:-69405719 | None:intergenic |
| TGGGGCCCTCCGTAACGTTC+CGG | 0.432988 | 2.3:+69405823 | MS.gene54303:CDS |
| TTCCGACGACCTGCTCCAAC+CGG | 0.436863 | 2.3:-69405842 | None:intergenic |
| ATCCTCAAGACTTGGCGGCT+TGG | 0.465996 | 2.3:-69405867 | None:intergenic |
| CGTAACGTTCCGGTTGGAGC+AGG | 0.491556 | 2.3:+69405833 | MS.gene54303:CDS |
| CAAAGATACTGGACGGCTGG+TGG | 0.496439 | 2.3:+69405803 | MS.gene54303:CDS |
| ATGATGGCCATAACTACTTA+GGG | 0.502994 | 2.3:+69405933 | MS.gene54303:CDS |
| CTGCTCCAACCGGAACGTTA+CGG | 0.518351 | 2.3:-69405832 | None:intergenic |
| AAAAGAAAGTGAAGATCAAA+CGG | 0.525439 | 2.3:+69405664 | MS.gene54303:CDS |
| GCCCTCCGTAACGTTCCGGT+TGG | 0.526190 | 2.3:+69405827 | MS.gene54303:CDS |
| AAAGATACTGGACGGCTGGT+GGG | 0.536772 | 2.3:+69405804 | MS.gene54303:CDS |
| TTGCATGAGGAATTAAAAGA+AGG | 0.537463 | 2.3:+69405638 | MS.gene54303:CDS |
| TCTTGAGGATAGCGGTTCAC+CGG | 0.541063 | 2.3:+69405880 | MS.gene54303:CDS |
| TGTCAAAGATACTGGACGGC+TGG | 0.542444 | 2.3:+69405800 | MS.gene54303:CDS |
| AGAAAAGGTGAAGAGATACA+AGG | 0.544735 | 2.3:+69405587 | MS.gene54303:CDS |
| ATACTCTTGCATCTTGGACA+TGG | 0.546078 | 2.3:-69405713 | None:intergenic |
| GGCCAAGCCGCCAAGTCTTG+AGG | 0.555303 | 2.3:+69405865 | MS.gene54303:CDS |
| TTCCGGTTGGAGCAGGTCGT+CGG | 0.558411 | 2.3:+69405840 | MS.gene54303:CDS |
| AAGCGGCGGAGGAAGACCTC+AGG | 0.572311 | 2.3:+69406007 | MS.gene54303:CDS |
| AAAATGGCTGAAGTGAGAAA+AGG | 0.579551 | 2.3:+69405572 | None:intergenic |
| AAGATACTGGACGGCTGGTG+GGG | 0.581078 | 2.3:+69405805 | MS.gene54303:CDS |
| CCGCTATCCTCAAGACTTGG+CGG | 0.597183 | 2.3:-69405872 | None:intergenic |
| GAACCGCTATCCTCAAGACT+TGG | 0.599554 | 2.3:-69405875 | None:intergenic |
| GAAAAGGTGAAGAGATACAA+GGG | 0.603099 | 2.3:+69405588 | MS.gene54303:CDS |
| GGTTGGAGCAGGTCGTCGGA+AGG | 0.608139 | 2.3:+69405844 | MS.gene54303:CDS |
| CACAACAATAAAATTGCATG+AGG | 0.620119 | 2.3:+69405625 | MS.gene54303:CDS |
| GAAGCTGCTAGTTCTGATGA+TGG | 0.628789 | 2.3:+69405917 | MS.gene54303:CDS |
| CGGCGGAGGAAGACCTCAGG+TGG | 0.630380 | 2.3:+69406010 | MS.gene54303:CDS |
| TGCTAATGAATAACCACCTG+AGG | 0.631649 | 2.3:-69406023 | None:intergenic |
| GAGCTGTCAAAGATACTGGA+CGG | 0.644495 | 2.3:+69405796 | MS.gene54303:CDS |
| TCCAACCGGAACGTTACGGA+GGG | 0.647718 | 2.3:-69405828 | None:intergenic |
| TCCCGAAAATCACTCTGAGG+AGG | 0.648141 | 2.3:-69405971 | None:intergenic |
| CTCCAACCGGAACGTTACGG+AGG | 0.649811 | 2.3:-69405829 | None:intergenic |
| ACTTCCCGAAAATCACTCTG+AGG | 0.686816 | 2.3:-69405974 | None:intergenic |
| GTAAAGAACAAGAAATCACA+AGG | 0.691544 | 2.3:-69406050 | None:intergenic |
| AGAAAGTGAAGATCAAACGG+TGG | 0.696077 | 2.3:+69405667 | MS.gene54303:CDS |
| CCGCCAAGTCTTGAGGATAG+CGG | 0.704408 | 2.3:+69405872 | MS.gene54303:CDS |
| AAGAACAAGAAATCACAAGG+AGG | 0.761754 | 2.3:-69406047 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAAAGAAAGTGAAGATCAAA+CGG | + | chr2.3:69405664-69405683 | MS.gene54303:CDS | 25.0% |
| ATACAAGGGATTAAGCTATT+TGG | + | chr2.3:69405602-69405621 | MS.gene54303:CDS | 30.0% | |
| CACAACAATAAAATTGCATG+AGG | + | chr2.3:69405625-69405644 | MS.gene54303:CDS | 30.0% | |
| TTGCATGAGGAATTAAAAGA+AGG | + | chr2.3:69405638-69405657 | MS.gene54303:CDS | 30.0% | |
| AGAAAAGGTGAAGAGATACA+AGG | + | chr2.3:69405587-69405606 | MS.gene54303:CDS | 35.0% | |
| ATGATGGCCATAACTACTTA+GGG | + | chr2.3:69405933-69405952 | MS.gene54303:CDS | 35.0% | |
| CAGCTCTTACAAAAATGTCT+TGG | - | chr2.3:69405782-69405801 | None:intergenic | 35.0% | |
| GAAAAGGTGAAGAGATACAA+GGG | + | chr2.3:69405588-69405607 | MS.gene54303:CDS | 35.0% | |
| GTTCTAACCCTAAGTAGTTA+TGG | - | chr2.3:69405943-69405962 | None:intergenic | 35.0% | |
| !!! | GATTTTCGGGAAGTATTTTC+CGG | + | chr2.3:69405983-69406002 | MS.gene54303:CDS | 35.0% |
| AGAAAGTGAAGATCAAACGG+TGG | + | chr2.3:69405667-69405686 | MS.gene54303:CDS | 40.0% | |
| ATACTCTTGCATCTTGGACA+TGG | - | chr2.3:69405716-69405735 | None:intergenic | 40.0% | |
| ATGTCCAAGATGCAAGAGTA+TGG | + | chr2.3:69405715-69405734 | MS.gene54303:CDS | 40.0% | |
| GCTTCATAGACACAACTTTC+CGG | - | chr2.3:69405902-69405921 | None:intergenic | 40.0% | |
| GTAAGAGCTGTCAAAGATAC+TGG | + | chr2.3:69405792-69405811 | MS.gene54303:CDS | 40.0% | |
| GTTTCCATACTCTTGCATCT+TGG | - | chr2.3:69405722-69405741 | None:intergenic | 40.0% | |
| TGCTAATGAATAACCACCTG+AGG | - | chr2.3:69406026-69406045 | None:intergenic | 40.0% | |
| ! | GATGATGGCCATAACTACTT+AGG | + | chr2.3:69405932-69405951 | MS.gene54303:CDS | 40.0% |
| ACTTCCCGAAAATCACTCTG+AGG | - | chr2.3:69405977-69405996 | None:intergenic | 45.0% | |
| GAGCTGTCAAAGATACTGGA+CGG | + | chr2.3:69405796-69405815 | MS.gene54303:CDS | 45.0% | |
| ! | TGCCTCCTCAGAGTGATTTT+CGG | + | chr2.3:69405969-69405988 | MS.gene54303:CDS | 45.0% |
| !! | GAAGCTGCTAGTTCTGATGA+TGG | + | chr2.3:69405917-69405936 | MS.gene54303:CDS | 45.0% |
| AAAGATACTGGACGGCTGGT+GGG | + | chr2.3:69405804-69405823 | MS.gene54303:CDS | 50.0% | |
| GAACCGCTATCCTCAAGACT+TGG | - | chr2.3:69405878-69405897 | None:intergenic | 50.0% | |
| TGTCAAAGATACTGGACGGC+TGG | + | chr2.3:69405800-69405819 | MS.gene54303:CDS | 50.0% | |
| ! | AAGTATTTTCCGGCAAGCGG+CGG | + | chr2.3:69405993-69406012 | MS.gene54303:CDS | 50.0% |
| ! | GCCTCCTCAGAGTGATTTTC+GGG | + | chr2.3:69405970-69405989 | MS.gene54303:CDS | 50.0% |
| ! | TCCCGAAAATCACTCTGAGG+AGG | - | chr2.3:69405974-69405993 | None:intergenic | 50.0% |
| ! | TCTTGAGGATAGCGGTTCAC+CGG | + | chr2.3:69405880-69405899 | MS.gene54303:CDS | 50.0% |
| !!! | GGGAAGTATTTTCCGGCAAG+CGG | + | chr2.3:69405990-69406009 | MS.gene54303:CDS | 50.0% |
| AAGATACTGGACGGCTGGTG+GGG | + | chr2.3:69405805-69405824 | MS.gene54303:CDS | 55.0% | |
| ATCCTCAAGACTTGGCGGCT+TGG | - | chr2.3:69405870-69405889 | None:intergenic | 55.0% | |
| CAAAGATACTGGACGGCTGG+TGG | + | chr2.3:69405803-69405822 | MS.gene54303:CDS | 55.0% | |
| CCGCCAAGTCTTGAGGATAG+CGG | + | chr2.3:69405872-69405891 | MS.gene54303:CDS | 55.0% | |
| CCGCTATCCTCAAGACTTGG+CGG | - | chr2.3:69405875-69405894 | None:intergenic | 55.0% | |
| CTGCTCCAACCGGAACGTTA+CGG | - | chr2.3:69405835-69405854 | None:intergenic | 55.0% | |
| TCCAACCGGAACGTTACGGA+GGG | - | chr2.3:69405831-69405850 | None:intergenic | 55.0% | |
| CGTAACGTTCCGGTTGGAGC+AGG | + | chr2.3:69405833-69405852 | MS.gene54303:CDS | 60.0% | |
| CTCCAACCGGAACGTTACGG+AGG | - | chr2.3:69405832-69405851 | None:intergenic | 60.0% | |
| TTCCGACGACCTGCTCCAAC+CGG | - | chr2.3:69405845-69405864 | None:intergenic | 60.0% | |
| TTCCGGTTGGAGCAGGTCGT+CGG | + | chr2.3:69405840-69405859 | MS.gene54303:CDS | 60.0% | |
| ! | TATTTTCCGGCAAGCGGCGG+AGG | + | chr2.3:69405996-69406015 | MS.gene54303:CDS | 60.0% |
| AAGCGGCGGAGGAAGACCTC+AGG | + | chr2.3:69406007-69406026 | MS.gene54303:CDS | 65.0% | |
| GCCCTCCGTAACGTTCCGGT+TGG | + | chr2.3:69405827-69405846 | MS.gene54303:CDS | 65.0% | |
| GGCCAAGCCGCCAAGTCTTG+AGG | + | chr2.3:69405865-69405884 | MS.gene54303:CDS | 65.0% | |
| GGTTGGAGCAGGTCGTCGGA+AGG | + | chr2.3:69405844-69405863 | MS.gene54303:CDS | 65.0% | |
| TGGGGCCCTCCGTAACGTTC+CGG | + | chr2.3:69405823-69405842 | MS.gene54303:CDS | 65.0% | |
| CGGCGGAGGAAGACCTCAGG+TGG | + | chr2.3:69406010-69406029 | MS.gene54303:CDS | 70.0% | |
| GGTCTTCCTCCGCCGCTTGC+CGG | - | chr2.3:69406005-69406024 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 69405575 | 69406057 | 69405575 | ID=MS.gene54303 |
| chr2.3 | mRNA | 69405575 | 69406057 | 69405575 | ID=MS.gene54303.t1;Parent=MS.gene54303 |
| chr2.3 | exon | 69405575 | 69406057 | 69405575 | ID=MS.gene54303.t1.exon1;Parent=MS.gene54303.t1 |
| chr2.3 | CDS | 69405575 | 69406057 | 69405575 | ID=cds.MS.gene54303.t1;Parent=MS.gene54303.t1 |
| Gene Sequence |
| Protein sequence |
