Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31148.t1 | XP_013465402.1 | 97.9 | 146 | 3 | 0 | 1 | 146 | 1 | 146 | 1.50E-73 | 285.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31148.t1 | Q41050 | 87.0 | 146 | 19 | 0 | 1 | 146 | 1 | 146 | 2.3e-67 | 256.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31148.t1 | I3SSC7 | 97.9 | 146 | 3 | 0 | 1 | 146 | 1 | 146 | 1.1e-73 | 285.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene31148 | 0.80957 | 1.77E-50 | -1.69E-46 |
| MS.gene04933 | MS.gene31148 | 0.80375 | 3.00E-49 | -1.69E-46 |
| MS.gene049378 | MS.gene31148 | 0.805935 | 1.05E-49 | -1.69E-46 |
| MS.gene049382 | MS.gene31148 | 0.80195 | 7.07E-49 | -1.69E-46 |
| MS.gene049599 | MS.gene31148 | -0.830006 | 3.74E-55 | -1.69E-46 |
| MS.gene049758 | MS.gene31148 | 0.837413 | 5.27E-57 | -1.69E-46 |
| MS.gene04984 | MS.gene31148 | 0.806274 | 8.91E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene31148 | 0.818281 | 2.13E-52 | -1.69E-46 |
| MS.gene050227 | MS.gene31148 | 0.838282 | 3.15E-57 | -1.69E-46 |
| MS.gene050228 | MS.gene31148 | 0.826708 | 2.34E-54 | -1.69E-46 |
| MS.gene050319 | MS.gene31148 | -0.851529 | 8.37E-61 | -1.69E-46 |
| MS.gene050330 | MS.gene31148 | -0.838836 | 2.27E-57 | -1.69E-46 |
| MS.gene050438 | MS.gene31148 | 0.813025 | 3.15E-51 | -1.69E-46 |
| MS.gene050558 | MS.gene31148 | 0.827027 | 1.96E-54 | -1.69E-46 |
| MS.gene050586 | MS.gene31148 | 0.803052 | 4.19E-49 | -1.69E-46 |
| MS.gene050623 | MS.gene31148 | -0.815506 | 8.93E-52 | -1.69E-46 |
| MS.gene050629 | MS.gene31148 | -0.815154 | 1.07E-51 | -1.69E-46 |
| MS.gene050719 | MS.gene31148 | 0.820203 | 7.77E-53 | -1.69E-46 |
| MS.gene050721 | MS.gene31148 | 0.821392 | 4.14E-53 | -1.69E-46 |
| MS.gene050724 | MS.gene31148 | 0.807621 | 4.62E-50 | -1.69E-46 |
| MS.gene050762 | MS.gene31148 | 0.814752 | 1.31E-51 | -1.69E-46 |
| MS.gene050763 | MS.gene31148 | 0.816676 | 4.89E-52 | -1.69E-46 |
| MS.gene050787 | MS.gene31148 | 0.850558 | 1.57E-60 | -1.69E-46 |
| MS.gene050807 | MS.gene31148 | 0.809665 | 1.69E-50 | -1.69E-46 |
| MS.gene050815 | MS.gene31148 | 0.824678 | 7.09E-54 | -1.69E-46 |
| MS.gene050824 | MS.gene31148 | 0.809279 | 2.05E-50 | -1.69E-46 |
| MS.gene050959 | MS.gene31148 | 0.802248 | 6.14E-49 | -1.69E-46 |
| MS.gene05119 | MS.gene31148 | -0.875166 | 3.82E-68 | -1.69E-46 |
| MS.gene052115 | MS.gene31148 | 0.83316 | 6.26E-56 | -1.69E-46 |
| MS.gene052176 | MS.gene31148 | 0.822451 | 2.35E-53 | -1.69E-46 |
| MS.gene052207 | MS.gene31148 | 0.832049 | 1.18E-55 | -1.69E-46 |
| MS.gene052256 | MS.gene31148 | 0.807594 | 4.68E-50 | -1.69E-46 |
| MS.gene052302 | MS.gene31148 | 0.807293 | 5.43E-50 | -1.69E-46 |
| MS.gene052309 | MS.gene31148 | -0.828969 | 6.69E-55 | -1.69E-46 |
| MS.gene052358 | MS.gene31148 | -0.816853 | 4.46E-52 | -1.69E-46 |
| MS.gene052376 | MS.gene31148 | 0.810259 | 1.26E-50 | -1.69E-46 |
| MS.gene052665 | MS.gene31148 | 0.820894 | 5.39E-53 | -1.69E-46 |
| MS.gene052856 | MS.gene31148 | 0.815959 | 7.08E-52 | -1.69E-46 |
| MS.gene052858 | MS.gene31148 | 0.806672 | 7.34E-50 | -1.69E-46 |
| MS.gene052860 | MS.gene31148 | 0.804711 | 1.90E-49 | -1.69E-46 |
| MS.gene052896 | MS.gene31148 | 0.817621 | 3.00E-52 | -1.69E-46 |
| MS.gene053085 | MS.gene31148 | 0.800067 | 1.71E-48 | -1.69E-46 |
| MS.gene053437 | MS.gene31148 | 0.835199 | 1.93E-56 | -1.69E-46 |
| MS.gene053836 | MS.gene31148 | 0.848679 | 5.26E-60 | -1.69E-46 |
| MS.gene053927 | MS.gene31148 | 0.810696 | 1.01E-50 | -1.69E-46 |
| MS.gene054379 | MS.gene31148 | 0.831104 | 2.02E-55 | -1.69E-46 |
| MS.gene054473 | MS.gene31148 | 0.854472 | 1.20E-61 | -1.69E-46 |
| MS.gene054542 | MS.gene31148 | 0.806313 | 8.74E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene31148 | 0.859999 | 2.80E-63 | -1.69E-46 |
| MS.gene054942 | MS.gene31148 | 0.806136 | 9.52E-50 | -1.69E-46 |
| MS.gene055174 | MS.gene31148 | 0.819351 | 1.22E-52 | -1.69E-46 |
| MS.gene055358 | MS.gene31148 | 0.801505 | 8.72E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene31148 | 0.811596 | 6.47E-51 | -1.69E-46 |
| MS.gene055816 | MS.gene31148 | -0.817225 | 3.68E-52 | -1.69E-46 |
| MS.gene056069 | MS.gene31148 | -0.901419 | 2.73E-78 | -1.69E-46 |
| MS.gene056589 | MS.gene31148 | 0.800801 | 1.22E-48 | -1.69E-46 |
| MS.gene057260 | MS.gene31148 | 0.80648 | 8.06E-50 | -1.69E-46 |
| MS.gene057439 | MS.gene31148 | 0.806523 | 7.89E-50 | -1.69E-46 |
| MS.gene057469 | MS.gene31148 | 0.819909 | 9.07E-53 | -1.69E-46 |
| MS.gene05761 | MS.gene31148 | 0.801794 | 7.61E-49 | -1.69E-46 |
| MS.gene058182 | MS.gene31148 | 0.823946 | 1.05E-53 | -1.69E-46 |
| MS.gene058661 | MS.gene31148 | -0.800943 | 1.14E-48 | -1.69E-46 |
| MS.gene058710 | MS.gene31148 | 0.815989 | 6.97E-52 | -1.69E-46 |
| MS.gene058749 | MS.gene31148 | 0.807994 | 3.85E-50 | -1.69E-46 |
| MS.gene058851 | MS.gene31148 | 0.827937 | 1.19E-54 | -1.69E-46 |
| MS.gene058906 | MS.gene31148 | 0.808855 | 2.52E-50 | -1.69E-46 |
| MS.gene059033 | MS.gene31148 | -0.832813 | 7.63E-56 | -1.69E-46 |
| MS.gene05984 | MS.gene31148 | 0.813632 | 2.32E-51 | -1.69E-46 |
| MS.gene060165 | MS.gene31148 | 0.830832 | 2.35E-55 | -1.69E-46 |
| MS.gene060322 | MS.gene31148 | 0.810928 | 9.03E-51 | -1.69E-46 |
| MS.gene060404 | MS.gene31148 | 0.834596 | 2.74E-56 | -1.69E-46 |
| MS.gene060476 | MS.gene31148 | 0.813079 | 3.07E-51 | -1.69E-46 |
| MS.gene060619 | MS.gene31148 | 0.816048 | 6.76E-52 | -1.69E-46 |
| MS.gene061040 | MS.gene31148 | -0.820269 | 7.50E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene31538 | MS.gene31148 | PPI |
| MS.gene046061 | MS.gene31148 | PPI |
| MS.gene069932 | MS.gene31148 | PPI |
| MS.gene028992 | MS.gene31148 | PPI |
| MS.gene35738 | MS.gene31148 | PPI |
| MS.gene31148 | MS.gene064203 | PPI |
| MS.gene45331 | MS.gene31148 | PPI |
| MS.gene31148 | MS.gene043354 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31148.t1 | MTR_2g096920 | 97.945 | 146 | 3 | 0 | 1 | 146 | 1 | 146 | 5.84e-103 | 291 |
| MS.gene31148.t1 | MTR_2g096920 | 95.192 | 104 | 5 | 0 | 1 | 104 | 1 | 104 | 3.38e-70 | 207 |
| MS.gene31148.t1 | MTR_2g096900 | 86.014 | 143 | 20 | 0 | 1 | 143 | 1 | 143 | 6.12e-69 | 205 |
| MS.gene31148.t1 | MTR_4g121900 | 32.680 | 153 | 74 | 3 | 18 | 142 | 24 | 175 | 3.52e-20 | 82.0 |
| MS.gene31148.t1 | MTR_2g034550 | 30.065 | 153 | 79 | 3 | 18 | 142 | 26 | 178 | 7.65e-17 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31148.t1 | AT2G28900 | 61.111 | 144 | 56 | 0 | 1 | 144 | 1 | 144 | 3.44e-65 | 195 |
| MS.gene31148.t1 | AT4G16160 | 28.758 | 153 | 82 | 3 | 18 | 143 | 21 | 173 | 3.31e-17 | 74.3 |
| MS.gene31148.t1 | AT4G16160 | 28.387 | 155 | 82 | 3 | 18 | 143 | 21 | 175 | 6.87e-17 | 73.6 |
Find 46 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTAATCTAGCTGTTGA+TGG | 0.254458 | 2.4:+6543843 | MS.gene31148:CDS |
| ATGCCTTGGAGCAGAATTTC+CGG | 0.262488 | 2.4:+6543771 | MS.gene31148:CDS |
| AACCATCAACAGCTAGATTA+AGG | 0.310083 | 2.4:-6543845 | None:intergenic |
| GTTGATGGTTTCTTGAAGAT+TGG | 0.371740 | 2.4:+6543858 | MS.gene31148:CDS |
| TGTGCAAGGAAGGTGCATAC+TGG | 0.379148 | 2.4:+6545097 | MS.gene31148:CDS |
| ATGATCGGAGGTGCGGTGAC+AGG | 0.380411 | 2.4:+6545602 | MS.gene31148:CDS |
| ATTGCAGTAGATGCCATTAC+AGG | 0.382089 | 2.4:+6545665 | MS.gene31148:CDS |
| GGATCCGTGGCACCAGAGAC+TGG | 0.423846 | 2.4:+6545256 | MS.gene31148:CDS |
| TCTACGCTCACAGGAGCTAT+AGG | 0.430170 | 2.4:+6545198 | MS.gene31148:intron |
| TGCCTTGGAGCAGAATTTCC+GGG | 0.441939 | 2.4:+6543772 | MS.gene31148:CDS |
| GTATATGTTGGAACAGAATA+CGG | 0.442517 | 2.4:+6545225 | MS.gene31148:CDS |
| CGGGTCAGTGTCTTCTCCAC+AGG | 0.444117 | 2.4:+6543791 | MS.gene31148:CDS |
| GTCTTCTCCACAGGTGGATG+TGG | 0.452189 | 2.4:+6543800 | MS.gene31148:CDS |
| TGATCGGAGGTGCGGTGACA+GGG | 0.467838 | 2.4:+6545603 | MS.gene31148:CDS |
| TGTCACCGCACCTCCGATCA+TGG | 0.470776 | 2.4:-6545600 | None:intergenic |
| GTGCAAGGAAGGTGCATACT+GGG | 0.476518 | 2.4:+6545098 | MS.gene31148:CDS |
| TTCAGTTCATTCAGGTAAAG+TGG | 0.477368 | 2.4:-6545721 | None:intergenic |
| TGAGAGAATTACCCAGTCTC+TGG | 0.488901 | 2.4:-6545268 | None:intergenic |
| GGCAATTGCAGCCCCTGTAA+TGG | 0.494547 | 2.4:-6545678 | None:intergenic |
| CTGAAGAAGATGTGCAAGGA+AGG | 0.520056 | 2.4:+6545087 | MS.gene31148:CDS |
| GCTATAGGTGGCGTATATGT+TGG | 0.523978 | 2.4:+6545213 | MS.gene31148:CDS |
| TATATGTTGGAACAGAATAC+GGG | 0.532988 | 2.4:+6545226 | MS.gene31148:CDS |
| GTCAGTGTCTTCTCCACAGG+TGG | 0.548058 | 2.4:+6543794 | MS.gene31148:CDS |
| TTGCAGTAGATGCCATTACA+GGG | 0.565602 | 2.4:+6545666 | MS.gene31148:CDS |
| CTGCAGAAGAATGCCATGAT+CGG | 0.581201 | 2.4:+6545587 | MS.gene31148:intron |
| GATCGGAGGTGCGGTGACAG+GGG | 0.583014 | 2.4:+6545604 | MS.gene31148:CDS |
| ACTCTTTCTGACAATATGAA+AGG | 0.589407 | 2.4:-6543998 | None:intergenic |
| GTTTATGAATTCTGCAGCAG+TGG | 0.590673 | 2.4:-6545699 | None:intergenic |
| TTACCCAGTCTCTGGTGCCA+CGG | 0.593471 | 2.4:-6545260 | None:intergenic |
| GATCCGTGGCACCAGAGACT+GGG | 0.594640 | 2.4:+6545257 | MS.gene31148:CDS |
| AGCTACAAGGGCACTTGCAG+AGG | 0.594831 | 2.4:+6543972 | MS.gene31148:CDS |
| GGTGGATGTGGTCATAGACA+TGG | 0.601669 | 2.4:+6543812 | MS.gene31148:CDS |
| GAACAGAATACGGGGTAGAG+AGG | 0.617900 | 2.4:+6545235 | MS.gene31148:CDS |
| CTGTGGAGAAGACACTGACC+CGG | 0.631326 | 2.4:-6543790 | None:intergenic |
| GACCCGGAAATTCTGCTCCA+AGG | 0.633432 | 2.4:-6543774 | None:intergenic |
| GAATGCCATGATCGGAGGTG+CGG | 0.635353 | 2.4:+6545595 | MS.gene31148:CDS |
| CAGAAGAATGCCATGATCGG+AGG | 0.646513 | 2.4:+6545590 | MS.gene31148:intron |
| TCAACAGCTAGATTAAGGAA+AGG | 0.647866 | 2.4:-6543840 | None:intergenic |
| GTGGATGTGGTCATAGACAT+GGG | 0.661394 | 2.4:+6543813 | MS.gene31148:CDS |
| TCTATGACCACATCCACCTG+TGG | 0.676186 | 2.4:-6543807 | None:intergenic |
| TACGGGGTAGAGAGGATCCG+TGG | 0.679908 | 2.4:+6545243 | MS.gene31148:CDS |
| TGCAAGGAAGGTGCATACTG+GGG | 0.686067 | 2.4:+6545099 | MS.gene31148:CDS |
| ACGCTCACAGGAGCTATAGG+TGG | 0.692992 | 2.4:+6545201 | MS.gene31148:intron |
| TGCAGTAGATGCCATTACAG+GGG | 0.693597 | 2.4:+6545667 | MS.gene31148:CDS |
| GCAGCTGAAGAAGATGTGCA+AGG | 0.725846 | 2.4:+6545083 | MS.gene31148:intron |
| ATATGTTGGAACAGAATACG+GGG | 0.766118 | 2.4:+6545227 | MS.gene31148:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAAATTCATTAATTAAA+GGG | - | chr2.4:6544800-6544819 | None:intergenic | 10.0% |
| !! | GATTGAAATTCATTAATTAA+AGG | - | chr2.4:6544801-6544820 | None:intergenic | 15.0% |
| !!! | TTTTGACAATTTTAACAAAA+GGG | - | chr2.4:6544049-6544068 | None:intergenic | 15.0% |
| !! | AAAGATGAAAAATTTGATTC+TGG | + | chr2.4:6544066-6544085 | MS.gene31148:intron | 20.0% |
| !! | ACAATACTTCAAAAAGAAAA+AGG | - | chr2.4:6544170-6544189 | None:intergenic | 20.0% |
| !! | CAATTAGAAATGTATAAAAC+TGG | - | chr2.4:6544366-6544385 | None:intergenic | 20.0% |
| !! | GAAATTTAACACATTGATAT+TGG | - | chr2.4:6544140-6544159 | None:intergenic | 20.0% |
| !! | TAATAACACAAATCTAAACA+AGG | - | chr2.4:6544113-6544132 | None:intergenic | 20.0% |
| !!! | ATTTAACATTGTTGTTATCA+TGG | + | chr2.4:6544291-6544310 | MS.gene31148:intron | 20.0% |
| !!! | CTTTTGACAATTTTAACAAA+AGG | - | chr2.4:6544050-6544069 | None:intergenic | 20.0% |
| !!! | TAGAGAAAACACTTTATTTT+TGG | + | chr2.4:6545355-6545374 | MS.gene31148:intron | 20.0% |
| ! | AAGATTATCTCTCATTAACA+AGG | - | chr2.4:6545060-6545079 | None:intergenic | 25.0% |
| ! | ATTTCTGTTTCGTAAATTTG+AGG | + | chr2.4:6544951-6544970 | MS.gene31148:intron | 25.0% |
| ! | CTTAACTGTCAAATCAAAAT+TGG | + | chr2.4:6544571-6544590 | MS.gene31148:intron | 25.0% |
| ! | GAGAATCTAAATTCTCAAAA+AGG | + | chr2.4:6544709-6544728 | MS.gene31148:intron | 25.0% |
| ! | TAGATAAGCTATGATGAAAA+AGG | - | chr2.4:6544433-6544452 | None:intergenic | 25.0% |
| ! | TGTGAGTAAAATAAGCATTT+CGG | + | chr2.4:6544742-6544761 | MS.gene31148:intron | 25.0% |
| ! | TTATTAACAAGCATCATGTT+TGG | + | chr2.4:6545424-6545443 | MS.gene31148:intron | 25.0% |
| ! | TTGTGTTGCATTATGTAATA+TGG | + | chr2.4:6545128-6545147 | MS.gene31148:intron | 25.0% |
| ! | TTTCTGTTTCGTAAATTTGA+GGG | + | chr2.4:6544952-6544971 | MS.gene31148:intron | 25.0% |
| !! | AAATATCAGCATAGATTTTC+AGG | - | chr2.4:6544343-6544362 | None:intergenic | 25.0% |
| !! | ATTGTGAGTATTTTACAGAT+TGG | + | chr2.4:6544382-6544401 | MS.gene31148:intron | 25.0% |
| !!! | ACATATAACCTTTGAAATTG+TGG | + | chr2.4:6544895-6544914 | MS.gene31148:intron | 25.0% |
| !!! | TTATCATGGTTGATTCTTTT+GGG | + | chr2.4:6544305-6544324 | MS.gene31148:intron | 25.0% |
| ACACATAACCTTTCAATTCA+AGG | + | chr2.4:6544922-6544941 | MS.gene31148:intron | 30.0% | |
| ACTCTTTCTGACAATATGAA+AGG | - | chr2.4:6544001-6544020 | None:intergenic | 30.0% | |
| ATGTTTGGAAATGAATTTGC+TGG | + | chr2.4:6545439-6545458 | MS.gene31148:intron | 30.0% | |
| ATTTAGTCCCTTGAATTGAA+AGG | - | chr2.4:6544933-6544952 | None:intergenic | 30.0% | |
| CACATAACCTTTCAATTCAA+GGG | + | chr2.4:6544923-6544942 | MS.gene31148:intron | 30.0% | |
| GTATATGTTGGAACAGAATA+CGG | + | chr2.4:6545225-6545244 | MS.gene31148:CDS | 30.0% | |
| TATATGTTGGAACAGAATAC+GGG | + | chr2.4:6545226-6545245 | MS.gene31148:CDS | 30.0% | |
| TATTTATCAAAGTCTGAACG+CGG | - | chr2.4:6544602-6544621 | None:intergenic | 30.0% | |
| TCTAAATTCTCAAAAAGGCA+TGG | + | chr2.4:6544714-6544733 | MS.gene31148:intron | 30.0% | |
| TCTTAGCTAGGGAAAAATAA+TGG | + | chr2.4:6544482-6544501 | MS.gene31148:intron | 30.0% | |
| TTCTGTTTCGTAAATTTGAG+GGG | + | chr2.4:6544953-6544972 | MS.gene31148:intron | 30.0% | |
| ! | ATCTGGATTCTCTCATTTTA+GGG | + | chr2.4:6544520-6544539 | MS.gene31148:intron | 30.0% |
| ! | CTAAATTCTCAAAAAGGCAT+GGG | + | chr2.4:6544715-6544734 | MS.gene31148:intron | 30.0% |
| ! | GTATCATCATCTTTGCATTT+TGG | - | chr2.4:6544628-6544647 | None:intergenic | 30.0% |
| ! | TGTGTACACTTTCTTTTAGA+CGG | + | chr2.4:6545472-6545491 | MS.gene31148:intron | 30.0% |
| ! | TGTTTGGAAATGAATTTGCT+GGG | + | chr2.4:6545440-6545459 | MS.gene31148:intron | 30.0% |
| !! | AGTCTTTCATTGACTTTGAT+AGG | - | chr2.4:6544836-6544855 | None:intergenic | 30.0% |
| !! | CTTGATTTGTCAGTATAGAT+CGG | + | chr2.4:6544662-6544681 | MS.gene31148:intron | 30.0% |
| !! | GTTATCATGGTTGATTCTTT+TGG | + | chr2.4:6544304-6544323 | MS.gene31148:intron | 30.0% |
| !! | TATCATGGTTGATTCTTTTG+GGG | + | chr2.4:6544306-6544325 | MS.gene31148:intron | 30.0% |
| !! | TTTCATTGACTTTGATAGGA+GGG | - | chr2.4:6544832-6544851 | None:intergenic | 30.0% |
| AACCATCAACAGCTAGATTA+AGG | - | chr2.4:6543848-6543867 | None:intergenic | 35.0% | |
| AACCTGAAAAAGAAGAAGGT+TGG | - | chr2.4:6543950-6543969 | None:intergenic | 35.0% | |
| ACTGGGTAATTCTCTCAATA+GGG | + | chr2.4:6545274-6545293 | MS.gene31148:intron | 35.0% | |
| ATATGTTGGAACAGAATACG+GGG | + | chr2.4:6545227-6545246 | MS.gene31148:CDS | 35.0% | |
| ATTTATCAAAGTCTGAACGC+GGG | - | chr2.4:6544601-6544620 | None:intergenic | 35.0% | |
| CTTATCTAAGAGTAGAGTGT+TGG | + | chr2.4:6544445-6544464 | MS.gene31148:intron | 35.0% | |
| GCAGTACATCAAAAGACAAA+GGG | - | chr2.4:6545571-6545590 | None:intergenic | 35.0% | |
| TAACAAAACATGTCTGTTCC+AGG | + | chr2.4:6544217-6544236 | MS.gene31148:intron | 35.0% | |
| TCAACAGCTAGATTAAGGAA+AGG | - | chr2.4:6543843-6543862 | None:intergenic | 35.0% | |
| TCATTACTTGAAACACTTCC+TGG | - | chr2.4:6544238-6544257 | None:intergenic | 35.0% | |
| TGCAGTACATCAAAAGACAA+AGG | - | chr2.4:6545572-6545591 | None:intergenic | 35.0% | |
| TTCCTTAATCTAGCTGTTGA+TGG | + | chr2.4:6543843-6543862 | MS.gene31148:CDS | 35.0% | |
| ! | AACCAACCTTCTTCTTTTTC+AGG | + | chr2.4:6543945-6543964 | MS.gene31148:intron | 35.0% |
| ! | AACCAGCTTGTACAATTTTG+AGG | + | chr2.4:6544984-6545003 | MS.gene31148:intron | 35.0% |
| ! | GATCTGGATTCTCTCATTTT+AGG | + | chr2.4:6544519-6544538 | MS.gene31148:intron | 35.0% |
| ! | TGAAAAAGAAGAAGGTTGGT+TGG | - | chr2.4:6543946-6543965 | None:intergenic | 35.0% |
| !! | CTTTCATTGACTTTGATAGG+AGG | - | chr2.4:6544833-6544852 | None:intergenic | 35.0% |
| !! | GTTGATGGTTTCTTGAAGAT+TGG | + | chr2.4:6543858-6543877 | MS.gene31148:CDS | 35.0% |
| !! | TAAGAGTAGAGTGTTGGATT+GGG | + | chr2.4:6544451-6544470 | MS.gene31148:intron | 35.0% |
| !!! | CTTGTCTTTTTTGTTGTTGC+TGG | - | chr2.4:6545645-6545664 | None:intergenic | 35.0% |
| AAAAGACAAAGGGAACAGAG+TGG | - | chr2.4:6545561-6545580 | None:intergenic | 40.0% | |
| AGCTAGGGAAAAATAATGGC+AGG | + | chr2.4:6544486-6544505 | MS.gene31148:intron | 40.0% | |
| ATGAGAGAATCCAGATCTAG+AGG | - | chr2.4:6544516-6544535 | None:intergenic | 40.0% | |
| ATTGCAGTAGATGCCATTAC+AGG | + | chr2.4:6545665-6545684 | MS.gene31148:CDS | 40.0% | |
| CAAAAGGGCTATAGCAAAAG+TGG | - | chr2.4:6544034-6544053 | None:intergenic | 40.0% | |
| CTGCAACCTGAAAAAGAAGA+AGG | - | chr2.4:6543954-6543973 | None:intergenic | 40.0% | |
| GACTGGGTAATTCTCTCAAT+AGG | + | chr2.4:6545273-6545292 | MS.gene31148:intron | 40.0% | |
| GCTAGGGAAAAATAATGGCA+GGG | + | chr2.4:6544487-6544506 | MS.gene31148:intron | 40.0% | |
| GTCCTCAAAATTGTACAAGC+TGG | - | chr2.4:6544989-6545008 | None:intergenic | 40.0% | |
| GTGTAGCACCACAATTTCAA+AGG | - | chr2.4:6544906-6544925 | None:intergenic | 40.0% | |
| GTTTATGAATTCTGCAGCAG+TGG | - | chr2.4:6545702-6545721 | None:intergenic | 40.0% | |
| TCAGTTGAGAGTCTTACCTA+AGG | + | chr2.4:6545534-6545553 | MS.gene31148:intron | 40.0% | |
| TTGCAGTAGATGCCATTACA+GGG | + | chr2.4:6545666-6545685 | MS.gene31148:CDS | 40.0% | |
| TTTCGGTCTTCGAAATTGCA+AGG | + | chr2.4:6544759-6544778 | MS.gene31148:intron | 40.0% | |
| ! | ATTTTCCTTTCTACGCTCAC+AGG | + | chr2.4:6545189-6545208 | MS.gene31148:intron | 40.0% |
| !! | CTAAGAGTAGAGTGTTGGAT+TGG | + | chr2.4:6544450-6544469 | MS.gene31148:intron | 40.0% |
| !!! | TTTTCAGGTTGCAGCTACAA+GGG | + | chr2.4:6543960-6543979 | MS.gene31148:intron | 40.0% |
| !!! | TTTTTCAGGTTGCAGCTACA+AGG | + | chr2.4:6543959-6543978 | MS.gene31148:intron | 40.0% |
| ATGCCTTGGAGCAGAATTTC+CGG | + | chr2.4:6543771-6543790 | MS.gene31148:CDS | 45.0% | |
| CTGAAGAAGATGTGCAAGGA+AGG | + | chr2.4:6545087-6545106 | MS.gene31148:CDS | 45.0% | |
| CTGCAGAAGAATGCCATGAT+CGG | + | chr2.4:6545587-6545606 | MS.gene31148:intron | 45.0% | |
| GCTATAGGTGGCGTATATGT+TGG | + | chr2.4:6545213-6545232 | MS.gene31148:CDS | 45.0% | |
| GGGTAATTCTCTCAATAGGG+TGG | + | chr2.4:6545277-6545296 | MS.gene31148:intron | 45.0% | |
| GTGGATGTGGTCATAGACAT+GGG | + | chr2.4:6543813-6543832 | MS.gene31148:CDS | 45.0% | |
| TGAGAGAATTACCCAGTCTC+TGG | - | chr2.4:6545271-6545290 | None:intergenic | 45.0% | |
| TGCAGTAGATGCCATTACAG+GGG | + | chr2.4:6545667-6545686 | MS.gene31148:CDS | 45.0% | |
| !! | GGGAGGTTTAGTCTTAGCTA+GGG | + | chr2.4:6544471-6544490 | MS.gene31148:intron | 45.0% |
| !! | TGGGAGGTTTAGTCTTAGCT+AGG | + | chr2.4:6544470-6544489 | MS.gene31148:intron | 45.0% |
| AAGGGAACAGAGTGGTCCTT+AGG | - | chr2.4:6545553-6545572 | None:intergenic | 50.0% | |
| CAGAAGAATGCCATGATCGG+AGG | + | chr2.4:6545590-6545609 | MS.gene31148:intron | 50.0% | |
| GAACAGAATACGGGGTAGAG+AGG | + | chr2.4:6545235-6545254 | MS.gene31148:CDS | 50.0% | |
| GCAGCTGAAGAAGATGTGCA+AGG | + | chr2.4:6545083-6545102 | MS.gene31148:intron | 50.0% | |
| GGTGGATGTGGTCATAGACA+TGG | + | chr2.4:6543812-6543831 | MS.gene31148:CDS | 50.0% | |
| TAGCTCCTGTGAGCGTAGAA+AGG | - | chr2.4:6545197-6545216 | None:intergenic | 50.0% | |
| TCTACGCTCACAGGAGCTAT+AGG | + | chr2.4:6545198-6545217 | MS.gene31148:intron | 50.0% | |
| TCTATGACCACATCCACCTG+TGG | - | chr2.4:6543810-6543829 | None:intergenic | 50.0% | |
| TGCCTTGGAGCAGAATTTCC+GGG | + | chr2.4:6543772-6543791 | MS.gene31148:CDS | 50.0% | |
| TGGACTTGTCGTCAACGTGA+TGG | + | chr2.4:6545375-6545394 | MS.gene31148:intron | 50.0% | |
| ! | GTGCAAGGAAGGTGCATACT+GGG | + | chr2.4:6545098-6545117 | MS.gene31148:CDS | 50.0% |
| ! | TGCAAGGAAGGTGCATACTG+GGG | + | chr2.4:6545099-6545118 | MS.gene31148:CDS | 50.0% |
| ! | TGTGCAAGGAAGGTGCATAC+TGG | + | chr2.4:6545097-6545116 | MS.gene31148:CDS | 50.0% |
| !! | GAGTAGAGTGTTGGATTGGG+AGG | + | chr2.4:6544454-6544473 | MS.gene31148:intron | 50.0% |
| ACGCTCACAGGAGCTATAGG+TGG | + | chr2.4:6545201-6545220 | MS.gene31148:intron | 55.0% | |
| CTGTGGAGAAGACACTGACC+CGG | - | chr2.4:6543793-6543812 | None:intergenic | 55.0% | |
| GAATGCCATGATCGGAGGTG+CGG | + | chr2.4:6545595-6545614 | MS.gene31148:CDS | 55.0% | |
| GACCCGGAAATTCTGCTCCA+AGG | - | chr2.4:6543777-6543796 | None:intergenic | 55.0% | |
| GGCAATTGCAGCCCCTGTAA+TGG | - | chr2.4:6545681-6545700 | None:intergenic | 55.0% | |
| GGCAGGGAAACCTCTAGATC+TGG | + | chr2.4:6544503-6544522 | MS.gene31148:intron | 55.0% | |
| GTCAGTGTCTTCTCCACAGG+TGG | + | chr2.4:6543794-6543813 | MS.gene31148:CDS | 55.0% | |
| GTCTTCTCCACAGGTGGATG+TGG | + | chr2.4:6543800-6543819 | MS.gene31148:CDS | 55.0% | |
| ! | TTACCCAGTCTCTGGTGCCA+CGG | - | chr2.4:6545263-6545282 | None:intergenic | 55.0% |
| !! | AGCTACAAGGGCACTTGCAG+AGG | + | chr2.4:6543972-6543991 | MS.gene31148:CDS | 55.0% |
| CGGGTCAGTGTCTTCTCCAC+AGG | + | chr2.4:6543791-6543810 | MS.gene31148:CDS | 60.0% | |
| GATCCGTGGCACCAGAGACT+GGG | + | chr2.4:6545257-6545276 | MS.gene31148:CDS | 60.0% | |
| TACGGGGTAGAGAGGATCCG+TGG | + | chr2.4:6545243-6545262 | MS.gene31148:CDS | 60.0% | |
| TGTCACCGCACCTCCGATCA+TGG | - | chr2.4:6545603-6545622 | None:intergenic | 60.0% | |
| ! | ATGATCGGAGGTGCGGTGAC+AGG | + | chr2.4:6545602-6545621 | MS.gene31148:CDS | 60.0% |
| ! | TGATCGGAGGTGCGGTGACA+GGG | + | chr2.4:6545603-6545622 | MS.gene31148:CDS | 60.0% |
| GGATCCGTGGCACCAGAGAC+TGG | + | chr2.4:6545256-6545275 | MS.gene31148:CDS | 65.0% | |
| ! | GATCGGAGGTGCGGTGACAG+GGG | + | chr2.4:6545604-6545623 | MS.gene31148:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 6543771 | 6545733 | 6543771 | ID=MS.gene31148 |
| chr2.4 | mRNA | 6543771 | 6545733 | 6543771 | ID=MS.gene31148.t1;Parent=MS.gene31148 |
| chr2.4 | exon | 6543771 | 6543884 | 6543771 | ID=MS.gene31148.t1.exon1;Parent=MS.gene31148.t1 |
| chr2.4 | CDS | 6543771 | 6543884 | 6543771 | ID=cds.MS.gene31148.t1;Parent=MS.gene31148.t1 |
| chr2.4 | exon | 6543967 | 6544018 | 6543967 | ID=MS.gene31148.t1.exon2;Parent=MS.gene31148.t1 |
| chr2.4 | CDS | 6543967 | 6544018 | 6543967 | ID=cds.MS.gene31148.t1;Parent=MS.gene31148.t1 |
| chr2.4 | exon | 6544239 | 6544270 | 6544239 | ID=MS.gene31148.t1.exon3;Parent=MS.gene31148.t1 |
| chr2.4 | CDS | 6544239 | 6544270 | 6544239 | ID=cds.MS.gene31148.t1;Parent=MS.gene31148.t1 |
| chr2.4 | exon | 6545087 | 6545120 | 6545087 | ID=MS.gene31148.t1.exon4;Parent=MS.gene31148.t1 |
| chr2.4 | CDS | 6545087 | 6545120 | 6545087 | ID=cds.MS.gene31148.t1;Parent=MS.gene31148.t1 |
| chr2.4 | exon | 6545211 | 6545278 | 6545211 | ID=MS.gene31148.t1.exon5;Parent=MS.gene31148.t1 |
| chr2.4 | CDS | 6545211 | 6545278 | 6545211 | ID=cds.MS.gene31148.t1;Parent=MS.gene31148.t1 |
| chr2.4 | exon | 6545593 | 6545733 | 6545593 | ID=MS.gene31148.t1.exon6;Parent=MS.gene31148.t1 |
| chr2.4 | CDS | 6545593 | 6545733 | 6545593 | ID=cds.MS.gene31148.t1;Parent=MS.gene31148.t1 |
| Gene Sequence |
| Protein sequence |
