Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45498.t1 | XP_013465402.1 | 97.9 | 146 | 3 | 0 | 1 | 146 | 1 | 146 | 1.50E-73 | 285.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45498.t1 | Q41050 | 87.0 | 146 | 19 | 0 | 1 | 146 | 1 | 146 | 2.3e-67 | 256.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45498.t1 | I3SSC7 | 97.9 | 146 | 3 | 0 | 1 | 146 | 1 | 146 | 1.1e-73 | 285.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene45498 | 0.80173 | 7.84E-49 | -1.69E-46 |
| MS.gene049233 | MS.gene45498 | 0.805497 | 1.30E-49 | -1.69E-46 |
| MS.gene049260 | MS.gene45498 | 0.808894 | 2.47E-50 | -1.69E-46 |
| MS.gene049297 | MS.gene45498 | 0.807044 | 6.13E-50 | -1.69E-46 |
| MS.gene04933 | MS.gene45498 | 0.811114 | 8.23E-51 | -1.69E-46 |
| MS.gene049378 | MS.gene45498 | 0.820999 | 5.10E-53 | -1.69E-46 |
| MS.gene049382 | MS.gene45498 | 0.802672 | 5.02E-49 | -1.69E-46 |
| MS.gene049599 | MS.gene45498 | -0.84435 | 7.98E-59 | -1.69E-46 |
| MS.gene049758 | MS.gene45498 | 0.866183 | 3.44E-65 | -1.69E-46 |
| MS.gene04984 | MS.gene45498 | 0.819331 | 1.23E-52 | -1.69E-46 |
| MS.gene050226 | MS.gene45498 | 0.827782 | 1.29E-54 | -1.69E-46 |
| MS.gene050227 | MS.gene45498 | 0.842904 | 1.94E-58 | -1.69E-46 |
| MS.gene050228 | MS.gene45498 | 0.830202 | 3.35E-55 | -1.69E-46 |
| MS.gene050301 | MS.gene45498 | 0.805885 | 1.08E-49 | -1.69E-46 |
| MS.gene050319 | MS.gene45498 | -0.85787 | 1.22E-62 | -1.69E-46 |
| MS.gene050330 | MS.gene45498 | -0.849506 | 3.10E-60 | -1.69E-46 |
| MS.gene050438 | MS.gene45498 | 0.819109 | 1.38E-52 | -1.69E-46 |
| MS.gene050442 | MS.gene45498 | 0.802846 | 4.62E-49 | -1.69E-46 |
| MS.gene050516 | MS.gene45498 | 0.803414 | 3.53E-49 | -1.69E-46 |
| MS.gene050558 | MS.gene45498 | 0.833452 | 5.29E-56 | -1.69E-46 |
| MS.gene050586 | MS.gene45498 | 0.811042 | 8.53E-51 | -1.69E-46 |
| MS.gene050623 | MS.gene45498 | -0.825038 | 5.83E-54 | -1.69E-46 |
| MS.gene050629 | MS.gene45498 | -0.818755 | 1.66E-52 | -1.69E-46 |
| MS.gene050719 | MS.gene45498 | 0.83284 | 7.51E-56 | -1.69E-46 |
| MS.gene050721 | MS.gene45498 | 0.832672 | 8.27E-56 | -1.69E-46 |
| MS.gene050724 | MS.gene45498 | 0.822283 | 2.57E-53 | -1.69E-46 |
| MS.gene050762 | MS.gene45498 | 0.833968 | 3.93E-56 | -1.69E-46 |
| MS.gene050763 | MS.gene45498 | 0.835898 | 1.28E-56 | -1.69E-46 |
| MS.gene050787 | MS.gene45498 | 0.856159 | 3.88E-62 | -1.69E-46 |
| MS.gene050807 | MS.gene45498 | 0.809503 | 1.83E-50 | -1.69E-46 |
| MS.gene050815 | MS.gene45498 | 0.824298 | 8.71E-54 | -1.69E-46 |
| MS.gene050820 | MS.gene45498 | 0.802401 | 5.71E-49 | -1.69E-46 |
| MS.gene050824 | MS.gene45498 | 0.816224 | 6.17E-52 | -1.69E-46 |
| MS.gene050959 | MS.gene45498 | 0.813267 | 2.79E-51 | -1.69E-46 |
| MS.gene051080 | MS.gene45498 | -0.81991 | 9.06E-53 | -1.69E-46 |
| MS.gene05119 | MS.gene45498 | -0.891858 | 2.71E-74 | -1.69E-46 |
| MS.gene051663 | MS.gene45498 | 0.815783 | 7.75E-52 | -1.69E-46 |
| MS.gene051860 | MS.gene45498 | 0.823949 | 1.05E-53 | -1.69E-46 |
| MS.gene052115 | MS.gene45498 | 0.858413 | 8.38E-63 | -1.69E-46 |
| MS.gene052176 | MS.gene45498 | 0.820749 | 5.82E-53 | -1.69E-46 |
| MS.gene052207 | MS.gene45498 | 0.847176 | 1.36E-59 | -1.69E-46 |
| MS.gene052256 | MS.gene45498 | 0.808929 | 2.43E-50 | -1.69E-46 |
| MS.gene052302 | MS.gene45498 | 0.802007 | 6.88E-49 | -1.69E-46 |
| MS.gene052309 | MS.gene45498 | -0.834259 | 3.32E-56 | -1.69E-46 |
| MS.gene052358 | MS.gene45498 | -0.802307 | 5.97E-49 | -1.69E-46 |
| MS.gene052376 | MS.gene45498 | 0.804828 | 1.79E-49 | -1.69E-46 |
| MS.gene052564 | MS.gene45498 | 0.814804 | 1.28E-51 | -1.69E-46 |
| MS.gene052565 | MS.gene45498 | 0.818889 | 1.55E-52 | -1.69E-46 |
| MS.gene052665 | MS.gene45498 | 0.826322 | 2.89E-54 | -1.69E-46 |
| MS.gene052856 | MS.gene45498 | 0.813181 | 2.91E-51 | -1.69E-46 |
| MS.gene052896 | MS.gene45498 | 0.817347 | 3.46E-52 | -1.69E-46 |
| MS.gene053437 | MS.gene45498 | 0.837704 | 4.44E-57 | -1.69E-46 |
| MS.gene053836 | MS.gene45498 | 0.870254 | 1.68E-66 | -1.69E-46 |
| MS.gene053927 | MS.gene45498 | 0.826123 | 3.22E-54 | -1.69E-46 |
| MS.gene054379 | MS.gene45498 | 0.845329 | 4.35E-59 | -1.69E-46 |
| MS.gene054468 | MS.gene45498 | 0.807415 | 5.11E-50 | -1.69E-46 |
| MS.gene054473 | MS.gene45498 | 0.873906 | 1.02E-67 | -1.69E-46 |
| MS.gene054542 | MS.gene45498 | 0.818315 | 2.09E-52 | -1.69E-46 |
| MS.gene054667 | MS.gene45498 | 0.809534 | 1.80E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene45498 | 0.878867 | 1.98E-69 | -1.69E-46 |
| MS.gene054942 | MS.gene45498 | 0.817985 | 2.48E-52 | -1.69E-46 |
| MS.gene055174 | MS.gene45498 | 0.821248 | 4.47E-53 | -1.69E-46 |
| MS.gene055358 | MS.gene45498 | 0.801948 | 7.08E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene45498 | 0.836298 | 1.02E-56 | -1.69E-46 |
| MS.gene055428 | MS.gene45498 | 0.823118 | 1.65E-53 | -1.69E-46 |
| MS.gene055816 | MS.gene45498 | -0.826271 | 2.97E-54 | -1.69E-46 |
| MS.gene055859 | MS.gene45498 | 0.819976 | 8.75E-53 | -1.69E-46 |
| MS.gene056069 | MS.gene45498 | -0.894264 | 2.91E-75 | -1.69E-46 |
| MS.gene056589 | MS.gene45498 | 0.800286 | 1.55E-48 | -1.69E-46 |
| MS.gene056875 | MS.gene45498 | 0.806979 | 6.32E-50 | -1.69E-46 |
| MS.gene056979 | MS.gene45498 | 0.800302 | 1.54E-48 | -1.69E-46 |
| MS.gene057121 | MS.gene45498 | 0.809754 | 1.62E-50 | -1.69E-46 |
| MS.gene057245 | MS.gene45498 | 0.802384 | 5.76E-49 | -1.69E-46 |
| MS.gene057260 | MS.gene45498 | 0.808273 | 3.36E-50 | -1.69E-46 |
| MS.gene057439 | MS.gene45498 | 0.815481 | 9.04E-52 | -1.69E-46 |
| MS.gene057469 | MS.gene45498 | 0.84453 | 7.14E-59 | -1.69E-46 |
| MS.gene05761 | MS.gene45498 | 0.810663 | 1.03E-50 | -1.69E-46 |
| MS.gene057665 | MS.gene45498 | 0.802735 | 4.87E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene45498 | 0.803515 | 3.36E-49 | -1.69E-46 |
| MS.gene05811 | MS.gene45498 | 0.816529 | 5.28E-52 | -1.69E-46 |
| MS.gene058182 | MS.gene45498 | 0.83406 | 3.73E-56 | -1.69E-46 |
| MS.gene058661 | MS.gene45498 | -0.811385 | 7.19E-51 | -1.69E-46 |
| MS.gene058710 | MS.gene45498 | 0.829441 | 5.14E-55 | -1.69E-46 |
| MS.gene058749 | MS.gene45498 | 0.810848 | 9.40E-51 | -1.69E-46 |
| MS.gene058851 | MS.gene45498 | 0.824978 | 6.02E-54 | -1.69E-46 |
| MS.gene058906 | MS.gene45498 | 0.805117 | 1.56E-49 | -1.69E-46 |
| MS.gene059033 | MS.gene45498 | -0.835422 | 1.69E-56 | -1.69E-46 |
| MS.gene059285 | MS.gene45498 | 0.803425 | 3.51E-49 | -1.69E-46 |
| MS.gene059518 | MS.gene45498 | 0.807556 | 4.77E-50 | -1.69E-46 |
| MS.gene059664 | MS.gene45498 | 0.804942 | 1.70E-49 | -1.69E-46 |
| MS.gene059713 | MS.gene45498 | 0.806269 | 8.93E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene45498 | 0.839552 | 1.48E-57 | -1.69E-46 |
| MS.gene059899 | MS.gene45498 | 0.823978 | 1.04E-53 | -1.69E-46 |
| MS.gene060137 | MS.gene45498 | -0.807556 | 4.77E-50 | -1.69E-46 |
| MS.gene060165 | MS.gene45498 | 0.832539 | 8.93E-56 | -1.69E-46 |
| MS.gene060322 | MS.gene45498 | 0.817621 | 3.00E-52 | -1.69E-46 |
| MS.gene060404 | MS.gene45498 | 0.837421 | 5.25E-57 | -1.69E-46 |
| MS.gene060476 | MS.gene45498 | 0.815755 | 7.86E-52 | -1.69E-46 |
| MS.gene060480 | MS.gene45498 | 0.829143 | 6.07E-55 | -1.69E-46 |
| MS.gene060619 | MS.gene45498 | 0.816554 | 5.21E-52 | -1.69E-46 |
| MS.gene060683 | MS.gene45498 | 0.803491 | 3.40E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene45498 | -0.806391 | 8.41E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene028992 | MS.gene45498 | PPI |
| MS.gene046061 | MS.gene45498 | PPI |
| MS.gene069932 | MS.gene45498 | PPI |
| MS.gene45331 | MS.gene45498 | PPI |
| MS.gene45498 | MS.gene064203 | PPI |
| MS.gene45498 | MS.gene35738 | PPI |
| MS.gene31538 | MS.gene45498 | PPI |
| MS.gene45498 | MS.gene043354 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45498.t1 | MTR_2g096920 | 97.945 | 146 | 3 | 0 | 1 | 146 | 1 | 146 | 5.84e-103 | 291 |
| MS.gene45498.t1 | MTR_2g096920 | 95.192 | 104 | 5 | 0 | 1 | 104 | 1 | 104 | 3.38e-70 | 207 |
| MS.gene45498.t1 | MTR_2g096900 | 86.014 | 143 | 20 | 0 | 1 | 143 | 1 | 143 | 6.12e-69 | 205 |
| MS.gene45498.t1 | MTR_4g121900 | 32.680 | 153 | 74 | 3 | 18 | 142 | 24 | 175 | 3.52e-20 | 82.0 |
| MS.gene45498.t1 | MTR_2g034550 | 30.065 | 153 | 79 | 3 | 18 | 142 | 26 | 178 | 7.65e-17 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45498.t1 | AT2G28900 | 61.111 | 144 | 56 | 0 | 1 | 144 | 1 | 144 | 3.44e-65 | 195 |
| MS.gene45498.t1 | AT4G16160 | 28.758 | 153 | 82 | 3 | 18 | 143 | 21 | 173 | 3.31e-17 | 74.3 |
| MS.gene45498.t1 | AT4G16160 | 28.387 | 155 | 82 | 3 | 18 | 143 | 21 | 175 | 6.87e-17 | 73.6 |
Find 46 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTAATCTAGCTGTTGA+TGG | 0.254458 | 2.1:+6768490 | MS.gene45498:CDS |
| ATGCCTTGGAGCAGAATTTC+CGG | 0.262488 | 2.1:+6768418 | MS.gene45498:CDS |
| AACCATCAACAGCTAGATTA+AGG | 0.310083 | 2.1:-6768492 | None:intergenic |
| GTTGATGGTTTCTTGAAGAT+TGG | 0.371740 | 2.1:+6768505 | MS.gene45498:CDS |
| TGTGCAAGGAAGGTGCATAC+TGG | 0.379148 | 2.1:+6769744 | MS.gene45498:CDS |
| ATGATCGGAGGTGCGGTGAC+AGG | 0.380411 | 2.1:+6770249 | MS.gene45498:CDS |
| ATTGCAGTAGATGCCATTAC+AGG | 0.382089 | 2.1:+6770312 | MS.gene45498:CDS |
| GGATCCGTGGCACCAGAGAC+TGG | 0.423846 | 2.1:+6769903 | MS.gene45498:CDS |
| TCTACGCTCACAGGAGCTAT+AGG | 0.430170 | 2.1:+6769845 | MS.gene45498:intron |
| TGCCTTGGAGCAGAATTTCC+GGG | 0.441939 | 2.1:+6768419 | MS.gene45498:CDS |
| GTATATGTTGGAACAGAATA+CGG | 0.442517 | 2.1:+6769872 | MS.gene45498:CDS |
| CGGGTCAGTGTCTTCTCCAC+AGG | 0.444117 | 2.1:+6768438 | MS.gene45498:CDS |
| GTCTTCTCCACAGGTGGATG+TGG | 0.452189 | 2.1:+6768447 | MS.gene45498:CDS |
| TGATCGGAGGTGCGGTGACA+GGG | 0.467838 | 2.1:+6770250 | MS.gene45498:CDS |
| TGTCACCGCACCTCCGATCA+TGG | 0.470776 | 2.1:-6770247 | None:intergenic |
| GTGCAAGGAAGGTGCATACT+GGG | 0.476518 | 2.1:+6769745 | MS.gene45498:CDS |
| TTCAGTTCATTCAGGTAAAG+TGG | 0.477368 | 2.1:-6770368 | None:intergenic |
| TGAGAGAATTACCCAGTCTC+TGG | 0.488901 | 2.1:-6769915 | None:intergenic |
| GGCAATTGCAGCCCCTGTAA+TGG | 0.494547 | 2.1:-6770325 | None:intergenic |
| CTGAAGAAGATGTGCAAGGA+AGG | 0.520056 | 2.1:+6769734 | MS.gene45498:CDS |
| GCTATAGGTGGCGTATATGT+TGG | 0.523978 | 2.1:+6769860 | MS.gene45498:CDS |
| TATATGTTGGAACAGAATAC+GGG | 0.532988 | 2.1:+6769873 | MS.gene45498:CDS |
| GTCAGTGTCTTCTCCACAGG+TGG | 0.548058 | 2.1:+6768441 | MS.gene45498:CDS |
| TTGCAGTAGATGCCATTACA+GGG | 0.565602 | 2.1:+6770313 | MS.gene45498:CDS |
| CTGCAGAAGAATGCCATGAT+CGG | 0.581201 | 2.1:+6770234 | MS.gene45498:intron |
| GATCGGAGGTGCGGTGACAG+GGG | 0.583014 | 2.1:+6770251 | MS.gene45498:CDS |
| ACTCTTTCTGACAATATGAA+AGG | 0.589407 | 2.1:-6768645 | None:intergenic |
| GTTTATGAATTCTGCAGCAG+TGG | 0.590673 | 2.1:-6770346 | None:intergenic |
| TTACCCAGTCTCTGGTGCCA+CGG | 0.593471 | 2.1:-6769907 | None:intergenic |
| GATCCGTGGCACCAGAGACT+GGG | 0.594640 | 2.1:+6769904 | MS.gene45498:CDS |
| AGCTACAAGGGCACTTGCAG+AGG | 0.594831 | 2.1:+6768619 | MS.gene45498:CDS |
| GGTGGATGTGGTCATAGACA+TGG | 0.601669 | 2.1:+6768459 | MS.gene45498:CDS |
| GAACAGAATACGGGGTAGAG+AGG | 0.617900 | 2.1:+6769882 | MS.gene45498:CDS |
| CTGTGGAGAAGACACTGACC+CGG | 0.631326 | 2.1:-6768437 | None:intergenic |
| GACCCGGAAATTCTGCTCCA+AGG | 0.633432 | 2.1:-6768421 | None:intergenic |
| GAATGCCATGATCGGAGGTG+CGG | 0.635353 | 2.1:+6770242 | MS.gene45498:CDS |
| CAGAAGAATGCCATGATCGG+AGG | 0.646513 | 2.1:+6770237 | MS.gene45498:intron |
| TCAACAGCTAGATTAAGGAA+AGG | 0.647866 | 2.1:-6768487 | None:intergenic |
| GTGGATGTGGTCATAGACAT+GGG | 0.661394 | 2.1:+6768460 | MS.gene45498:CDS |
| TCTATGACCACATCCACCTG+TGG | 0.676186 | 2.1:-6768454 | None:intergenic |
| TACGGGGTAGAGAGGATCCG+TGG | 0.679908 | 2.1:+6769890 | MS.gene45498:CDS |
| TGCAAGGAAGGTGCATACTG+GGG | 0.686067 | 2.1:+6769746 | MS.gene45498:CDS |
| ACGCTCACAGGAGCTATAGG+TGG | 0.692992 | 2.1:+6769848 | MS.gene45498:intron |
| TGCAGTAGATGCCATTACAG+GGG | 0.693597 | 2.1:+6770314 | MS.gene45498:CDS |
| GCAGCTGAAGAAGATGTGCA+AGG | 0.725846 | 2.1:+6769730 | MS.gene45498:intron |
| ATATGTTGGAACAGAATACG+GGG | 0.766118 | 2.1:+6769874 | MS.gene45498:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAAATTCATTAATTAAA+GGG | - | chr2.1:6769447-6769466 | None:intergenic | 10.0% |
| !! | GATTGAAATTCATTAATTAA+AGG | - | chr2.1:6769448-6769467 | None:intergenic | 15.0% |
| !!! | TTTTGACAATTTTAACAAAA+GGG | - | chr2.1:6768696-6768715 | None:intergenic | 15.0% |
| !! | AAAGATGAAAAATTTGATTC+TGG | + | chr2.1:6768713-6768732 | MS.gene45498:intron | 20.0% |
| !! | ACAATACTTCAAAAAGAAAA+AGG | - | chr2.1:6768817-6768836 | None:intergenic | 20.0% |
| !! | CAATTAGAAATGTATAAAAC+TGG | - | chr2.1:6769013-6769032 | None:intergenic | 20.0% |
| !! | GAAATTTAACACATTGATAT+TGG | - | chr2.1:6768787-6768806 | None:intergenic | 20.0% |
| !! | TAATAACACAAATCTAAACA+AGG | - | chr2.1:6768760-6768779 | None:intergenic | 20.0% |
| !!! | ATTTAACATTGTTGTTATCA+TGG | + | chr2.1:6768938-6768957 | MS.gene45498:intron | 20.0% |
| !!! | CTTTTGACAATTTTAACAAA+AGG | - | chr2.1:6768697-6768716 | None:intergenic | 20.0% |
| !!! | TAGAGAAAACACTTTATTTT+TGG | + | chr2.1:6770002-6770021 | MS.gene45498:intron | 20.0% |
| ! | AAGATTATCTCTCATTAACA+AGG | - | chr2.1:6769707-6769726 | None:intergenic | 25.0% |
| ! | ATTTCTGTTTCGTAAATTTG+AGG | + | chr2.1:6769598-6769617 | MS.gene45498:intron | 25.0% |
| ! | CTTAACTGTCAAATCAAAAT+TGG | + | chr2.1:6769218-6769237 | MS.gene45498:intron | 25.0% |
| ! | GAGAATCTAAATTCTCAAAA+AGG | + | chr2.1:6769356-6769375 | MS.gene45498:intron | 25.0% |
| ! | TAGATAAGCTATGATGAAAA+AGG | - | chr2.1:6769080-6769099 | None:intergenic | 25.0% |
| ! | TGTGAGTAAAATAAGCATTT+CGG | + | chr2.1:6769389-6769408 | MS.gene45498:intron | 25.0% |
| ! | TTATTAACAAGCATCATGTT+TGG | + | chr2.1:6770071-6770090 | MS.gene45498:intron | 25.0% |
| ! | TTGTGTTGCATTATGTAATA+TGG | + | chr2.1:6769775-6769794 | MS.gene45498:intron | 25.0% |
| ! | TTTCTGTTTCGTAAATTTGA+GGG | + | chr2.1:6769599-6769618 | MS.gene45498:intron | 25.0% |
| !! | AAATATCAGCATAGATTTTC+AGG | - | chr2.1:6768990-6769009 | None:intergenic | 25.0% |
| !! | ATTGTGAGTATTTTACAGAT+TGG | + | chr2.1:6769029-6769048 | MS.gene45498:intron | 25.0% |
| !!! | ACATATAACCTTTGAAATTG+TGG | + | chr2.1:6769542-6769561 | MS.gene45498:intron | 25.0% |
| !!! | TTATCATGGTTGATTCTTTT+GGG | + | chr2.1:6768952-6768971 | MS.gene45498:intron | 25.0% |
| ACACATAACCTTTCAATTCA+AGG | + | chr2.1:6769569-6769588 | MS.gene45498:intron | 30.0% | |
| ACTCTTTCTGACAATATGAA+AGG | - | chr2.1:6768648-6768667 | None:intergenic | 30.0% | |
| ATGTTTGGAAATGAATTTGC+TGG | + | chr2.1:6770086-6770105 | MS.gene45498:intron | 30.0% | |
| ATTTAGTCCCTTGAATTGAA+AGG | - | chr2.1:6769580-6769599 | None:intergenic | 30.0% | |
| CACATAACCTTTCAATTCAA+GGG | + | chr2.1:6769570-6769589 | MS.gene45498:intron | 30.0% | |
| GTATATGTTGGAACAGAATA+CGG | + | chr2.1:6769872-6769891 | MS.gene45498:CDS | 30.0% | |
| TATATGTTGGAACAGAATAC+GGG | + | chr2.1:6769873-6769892 | MS.gene45498:CDS | 30.0% | |
| TATTTATCAAAGTCTGAACG+CGG | - | chr2.1:6769249-6769268 | None:intergenic | 30.0% | |
| TCTAAATTCTCAAAAAGGCA+TGG | + | chr2.1:6769361-6769380 | MS.gene45498:intron | 30.0% | |
| TCTTAGCTAGGGAAAAATAA+TGG | + | chr2.1:6769129-6769148 | MS.gene45498:intron | 30.0% | |
| TTCTGTTTCGTAAATTTGAG+GGG | + | chr2.1:6769600-6769619 | MS.gene45498:intron | 30.0% | |
| ! | ATCTGGATTCTCTCATTTTA+GGG | + | chr2.1:6769167-6769186 | MS.gene45498:intron | 30.0% |
| ! | CTAAATTCTCAAAAAGGCAT+GGG | + | chr2.1:6769362-6769381 | MS.gene45498:intron | 30.0% |
| ! | GTATCATCATCTTTGCATTT+TGG | - | chr2.1:6769275-6769294 | None:intergenic | 30.0% |
| ! | TGTGTACACTTTCTTTTAGA+CGG | + | chr2.1:6770119-6770138 | MS.gene45498:intron | 30.0% |
| ! | TGTTTGGAAATGAATTTGCT+GGG | + | chr2.1:6770087-6770106 | MS.gene45498:intron | 30.0% |
| !! | AGTCTTTCATTGACTTTGAT+AGG | - | chr2.1:6769483-6769502 | None:intergenic | 30.0% |
| !! | CTTGATTTGTCAGTATAGAT+CGG | + | chr2.1:6769309-6769328 | MS.gene45498:intron | 30.0% |
| !! | GTTATCATGGTTGATTCTTT+TGG | + | chr2.1:6768951-6768970 | MS.gene45498:intron | 30.0% |
| !! | TATCATGGTTGATTCTTTTG+GGG | + | chr2.1:6768953-6768972 | MS.gene45498:intron | 30.0% |
| !! | TTTCATTGACTTTGATAGGA+GGG | - | chr2.1:6769479-6769498 | None:intergenic | 30.0% |
| AACCATCAACAGCTAGATTA+AGG | - | chr2.1:6768495-6768514 | None:intergenic | 35.0% | |
| AACCTGAAAAAGAAGAAGGT+TGG | - | chr2.1:6768597-6768616 | None:intergenic | 35.0% | |
| ACTGGGTAATTCTCTCAATA+GGG | + | chr2.1:6769921-6769940 | MS.gene45498:intron | 35.0% | |
| ATATGTTGGAACAGAATACG+GGG | + | chr2.1:6769874-6769893 | MS.gene45498:CDS | 35.0% | |
| ATTTATCAAAGTCTGAACGC+GGG | - | chr2.1:6769248-6769267 | None:intergenic | 35.0% | |
| CTTATCTAAGAGTAGAGTGT+TGG | + | chr2.1:6769092-6769111 | MS.gene45498:intron | 35.0% | |
| GCAGTACATCAAAAGACAAA+GGG | - | chr2.1:6770218-6770237 | None:intergenic | 35.0% | |
| GCGTTCAGACTTTGATAAAT+AGG | + | chr2.1:6769248-6769267 | MS.gene45498:intron | 35.0% | |
| TAACAAAACATGTCTGTTCC+AGG | + | chr2.1:6768864-6768883 | MS.gene45498:intron | 35.0% | |
| TCAACAGCTAGATTAAGGAA+AGG | - | chr2.1:6768490-6768509 | None:intergenic | 35.0% | |
| TCATTACTTGAAACACTTCC+TGG | - | chr2.1:6768885-6768904 | None:intergenic | 35.0% | |
| TGCAGTACATCAAAAGACAA+AGG | - | chr2.1:6770219-6770238 | None:intergenic | 35.0% | |
| TTCCTTAATCTAGCTGTTGA+TGG | + | chr2.1:6768490-6768509 | MS.gene45498:CDS | 35.0% | |
| ! | AACCAACCTTCTTCTTTTTC+AGG | + | chr2.1:6768592-6768611 | MS.gene45498:intron | 35.0% |
| ! | AACCAGCTTGTACAATTTTG+AGG | + | chr2.1:6769631-6769650 | MS.gene45498:intron | 35.0% |
| ! | GATCTGGATTCTCTCATTTT+AGG | + | chr2.1:6769166-6769185 | MS.gene45498:intron | 35.0% |
| ! | TGAAAAAGAAGAAGGTTGGT+TGG | - | chr2.1:6768593-6768612 | None:intergenic | 35.0% |
| !! | CTTTCATTGACTTTGATAGG+AGG | - | chr2.1:6769480-6769499 | None:intergenic | 35.0% |
| !! | GTTGATGGTTTCTTGAAGAT+TGG | + | chr2.1:6768505-6768524 | MS.gene45498:CDS | 35.0% |
| !! | TAAGAGTAGAGTGTTGGATT+GGG | + | chr2.1:6769098-6769117 | MS.gene45498:intron | 35.0% |
| !!! | CTTGTCTTTTTTGTTGTTGC+TGG | - | chr2.1:6770292-6770311 | None:intergenic | 35.0% |
| AAAAGACAAAGGGAACAGAG+TGG | - | chr2.1:6770208-6770227 | None:intergenic | 40.0% | |
| AGCTAGGGAAAAATAATGGC+AGG | + | chr2.1:6769133-6769152 | MS.gene45498:intron | 40.0% | |
| ATGAGAGAATCCAGATCTAG+AGG | - | chr2.1:6769163-6769182 | None:intergenic | 40.0% | |
| ATTGCAGTAGATGCCATTAC+AGG | + | chr2.1:6770312-6770331 | MS.gene45498:CDS | 40.0% | |
| CAAAAGGGCTATAGCAAAAG+TGG | - | chr2.1:6768681-6768700 | None:intergenic | 40.0% | |
| CTGCAACCTGAAAAAGAAGA+AGG | - | chr2.1:6768601-6768620 | None:intergenic | 40.0% | |
| GACTGGGTAATTCTCTCAAT+AGG | + | chr2.1:6769920-6769939 | MS.gene45498:intron | 40.0% | |
| GCTAGGGAAAAATAATGGCA+GGG | + | chr2.1:6769134-6769153 | MS.gene45498:intron | 40.0% | |
| GTCCTCAAAATTGTACAAGC+TGG | - | chr2.1:6769636-6769655 | None:intergenic | 40.0% | |
| GTGTAGCACCACAATTTCAA+AGG | - | chr2.1:6769553-6769572 | None:intergenic | 40.0% | |
| GTTTATGAATTCTGCAGCAG+TGG | - | chr2.1:6770349-6770368 | None:intergenic | 40.0% | |
| TCAGTTGAGAGTCTTACCTA+AGG | + | chr2.1:6770181-6770200 | MS.gene45498:intron | 40.0% | |
| TTGCAGTAGATGCCATTACA+GGG | + | chr2.1:6770313-6770332 | MS.gene45498:CDS | 40.0% | |
| TTTCGGTCTTCGAAATTGCA+AGG | + | chr2.1:6769406-6769425 | MS.gene45498:intron | 40.0% | |
| ! | ATTTTCCTTTCTACGCTCAC+AGG | + | chr2.1:6769836-6769855 | MS.gene45498:intron | 40.0% |
| !! | CTAAGAGTAGAGTGTTGGAT+TGG | + | chr2.1:6769097-6769116 | MS.gene45498:intron | 40.0% |
| !!! | TTTTCAGGTTGCAGCTACAA+GGG | + | chr2.1:6768607-6768626 | MS.gene45498:intron | 40.0% |
| !!! | TTTTTCAGGTTGCAGCTACA+AGG | + | chr2.1:6768606-6768625 | MS.gene45498:intron | 40.0% |
| ATGCCTTGGAGCAGAATTTC+CGG | + | chr2.1:6768418-6768437 | MS.gene45498:CDS | 45.0% | |
| CTGAAGAAGATGTGCAAGGA+AGG | + | chr2.1:6769734-6769753 | MS.gene45498:CDS | 45.0% | |
| CTGCAGAAGAATGCCATGAT+CGG | + | chr2.1:6770234-6770253 | MS.gene45498:intron | 45.0% | |
| GCTATAGGTGGCGTATATGT+TGG | + | chr2.1:6769860-6769879 | MS.gene45498:CDS | 45.0% | |
| GGGTAATTCTCTCAATAGGG+TGG | + | chr2.1:6769924-6769943 | MS.gene45498:intron | 45.0% | |
| GTGGATGTGGTCATAGACAT+GGG | + | chr2.1:6768460-6768479 | MS.gene45498:CDS | 45.0% | |
| TGAGAGAATTACCCAGTCTC+TGG | - | chr2.1:6769918-6769937 | None:intergenic | 45.0% | |
| TGCAGTAGATGCCATTACAG+GGG | + | chr2.1:6770314-6770333 | MS.gene45498:CDS | 45.0% | |
| !! | GGGAGGTTTAGTCTTAGCTA+GGG | + | chr2.1:6769118-6769137 | MS.gene45498:intron | 45.0% |
| !! | TGGGAGGTTTAGTCTTAGCT+AGG | + | chr2.1:6769117-6769136 | MS.gene45498:intron | 45.0% |
| AAGGGAACAGAGTGGTCCTT+AGG | - | chr2.1:6770200-6770219 | None:intergenic | 50.0% | |
| CAGAAGAATGCCATGATCGG+AGG | + | chr2.1:6770237-6770256 | MS.gene45498:intron | 50.0% | |
| GAACAGAATACGGGGTAGAG+AGG | + | chr2.1:6769882-6769901 | MS.gene45498:CDS | 50.0% | |
| GCAGCTGAAGAAGATGTGCA+AGG | + | chr2.1:6769730-6769749 | MS.gene45498:intron | 50.0% | |
| GGTGGATGTGGTCATAGACA+TGG | + | chr2.1:6768459-6768478 | MS.gene45498:CDS | 50.0% | |
| TAGCTCCTGTGAGCGTAGAA+AGG | - | chr2.1:6769844-6769863 | None:intergenic | 50.0% | |
| TCTACGCTCACAGGAGCTAT+AGG | + | chr2.1:6769845-6769864 | MS.gene45498:intron | 50.0% | |
| TCTATGACCACATCCACCTG+TGG | - | chr2.1:6768457-6768476 | None:intergenic | 50.0% | |
| TGCCTTGGAGCAGAATTTCC+GGG | + | chr2.1:6768419-6768438 | MS.gene45498:CDS | 50.0% | |
| TGGACTTGTCGTCAACGTGA+TGG | + | chr2.1:6770022-6770041 | MS.gene45498:intron | 50.0% | |
| ! | GTGCAAGGAAGGTGCATACT+GGG | + | chr2.1:6769745-6769764 | MS.gene45498:CDS | 50.0% |
| ! | TGCAAGGAAGGTGCATACTG+GGG | + | chr2.1:6769746-6769765 | MS.gene45498:CDS | 50.0% |
| ! | TGTGCAAGGAAGGTGCATAC+TGG | + | chr2.1:6769744-6769763 | MS.gene45498:CDS | 50.0% |
| !! | GAGTAGAGTGTTGGATTGGG+AGG | + | chr2.1:6769101-6769120 | MS.gene45498:intron | 50.0% |
| ACGCTCACAGGAGCTATAGG+TGG | + | chr2.1:6769848-6769867 | MS.gene45498:intron | 55.0% | |
| CTGTGGAGAAGACACTGACC+CGG | - | chr2.1:6768440-6768459 | None:intergenic | 55.0% | |
| GAATGCCATGATCGGAGGTG+CGG | + | chr2.1:6770242-6770261 | MS.gene45498:CDS | 55.0% | |
| GACCCGGAAATTCTGCTCCA+AGG | - | chr2.1:6768424-6768443 | None:intergenic | 55.0% | |
| GGCAATTGCAGCCCCTGTAA+TGG | - | chr2.1:6770328-6770347 | None:intergenic | 55.0% | |
| GGCAGGGAAACCTCTAGATC+TGG | + | chr2.1:6769150-6769169 | MS.gene45498:intron | 55.0% | |
| GTCAGTGTCTTCTCCACAGG+TGG | + | chr2.1:6768441-6768460 | MS.gene45498:CDS | 55.0% | |
| GTCTTCTCCACAGGTGGATG+TGG | + | chr2.1:6768447-6768466 | MS.gene45498:CDS | 55.0% | |
| ! | TTACCCAGTCTCTGGTGCCA+CGG | - | chr2.1:6769910-6769929 | None:intergenic | 55.0% |
| !! | AGCTACAAGGGCACTTGCAG+AGG | + | chr2.1:6768619-6768638 | MS.gene45498:CDS | 55.0% |
| CGGGTCAGTGTCTTCTCCAC+AGG | + | chr2.1:6768438-6768457 | MS.gene45498:CDS | 60.0% | |
| GATCCGTGGCACCAGAGACT+GGG | + | chr2.1:6769904-6769923 | MS.gene45498:CDS | 60.0% | |
| TACGGGGTAGAGAGGATCCG+TGG | + | chr2.1:6769890-6769909 | MS.gene45498:CDS | 60.0% | |
| TGTCACCGCACCTCCGATCA+TGG | - | chr2.1:6770250-6770269 | None:intergenic | 60.0% | |
| ! | ATGATCGGAGGTGCGGTGAC+AGG | + | chr2.1:6770249-6770268 | MS.gene45498:CDS | 60.0% |
| ! | TGATCGGAGGTGCGGTGACA+GGG | + | chr2.1:6770250-6770269 | MS.gene45498:CDS | 60.0% |
| GGATCCGTGGCACCAGAGAC+TGG | + | chr2.1:6769903-6769922 | MS.gene45498:CDS | 65.0% | |
| ! | GATCGGAGGTGCGGTGACAG+GGG | + | chr2.1:6770251-6770270 | MS.gene45498:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 6768418 | 6770380 | 6768418 | ID=MS.gene45498 |
| chr2.1 | mRNA | 6768418 | 6770380 | 6768418 | ID=MS.gene45498.t1;Parent=MS.gene45498 |
| chr2.1 | exon | 6768418 | 6768531 | 6768418 | ID=MS.gene45498.t1.exon1;Parent=MS.gene45498.t1 |
| chr2.1 | CDS | 6768418 | 6768531 | 6768418 | ID=cds.MS.gene45498.t1;Parent=MS.gene45498.t1 |
| chr2.1 | exon | 6768614 | 6768665 | 6768614 | ID=MS.gene45498.t1.exon2;Parent=MS.gene45498.t1 |
| chr2.1 | CDS | 6768614 | 6768665 | 6768614 | ID=cds.MS.gene45498.t1;Parent=MS.gene45498.t1 |
| chr2.1 | exon | 6768886 | 6768917 | 6768886 | ID=MS.gene45498.t1.exon3;Parent=MS.gene45498.t1 |
| chr2.1 | CDS | 6768886 | 6768917 | 6768886 | ID=cds.MS.gene45498.t1;Parent=MS.gene45498.t1 |
| chr2.1 | exon | 6769734 | 6769767 | 6769734 | ID=MS.gene45498.t1.exon4;Parent=MS.gene45498.t1 |
| chr2.1 | CDS | 6769734 | 6769767 | 6769734 | ID=cds.MS.gene45498.t1;Parent=MS.gene45498.t1 |
| chr2.1 | exon | 6769858 | 6769925 | 6769858 | ID=MS.gene45498.t1.exon5;Parent=MS.gene45498.t1 |
| chr2.1 | CDS | 6769858 | 6769925 | 6769858 | ID=cds.MS.gene45498.t1;Parent=MS.gene45498.t1 |
| chr2.1 | exon | 6770240 | 6770380 | 6770240 | ID=MS.gene45498.t1.exon6;Parent=MS.gene45498.t1 |
| chr2.1 | CDS | 6770240 | 6770380 | 6770240 | ID=cds.MS.gene45498.t1;Parent=MS.gene45498.t1 |
| Gene Sequence |
| Protein sequence |
