Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30964.t1 | XP_013465402.1 | 97.9 | 146 | 3 | 0 | 1 | 146 | 1 | 146 | 1.50E-73 | 285.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30964.t1 | Q41050 | 87.0 | 146 | 19 | 0 | 1 | 146 | 1 | 146 | 2.3e-67 | 256.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30964.t1 | I3SSC7 | 97.9 | 146 | 3 | 0 | 1 | 146 | 1 | 146 | 1.1e-73 | 285.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049233 | MS.gene30964 | 0.803968 | 2.71E-49 | -1.69E-46 |
| MS.gene049260 | MS.gene30964 | 0.806702 | 7.23E-50 | -1.69E-46 |
| MS.gene049297 | MS.gene30964 | 0.80826 | 3.38E-50 | -1.69E-46 |
| MS.gene04933 | MS.gene30964 | 0.815051 | 1.13E-51 | -1.69E-46 |
| MS.gene049378 | MS.gene30964 | 0.821467 | 3.98E-53 | -1.69E-46 |
| MS.gene049599 | MS.gene30964 | -0.838887 | 2.20E-57 | -1.69E-46 |
| MS.gene049758 | MS.gene30964 | 0.863393 | 2.57E-64 | -1.69E-46 |
| MS.gene04984 | MS.gene30964 | 0.81934 | 1.22E-52 | -1.69E-46 |
| MS.gene050226 | MS.gene30964 | 0.828386 | 9.25E-55 | -1.69E-46 |
| MS.gene050227 | MS.gene30964 | 0.841937 | 3.51E-58 | -1.69E-46 |
| MS.gene050228 | MS.gene30964 | 0.830398 | 3.00E-55 | -1.69E-46 |
| MS.gene050301 | MS.gene30964 | 0.802958 | 4.38E-49 | -1.69E-46 |
| MS.gene050319 | MS.gene30964 | -0.861593 | 9.20E-64 | -1.69E-46 |
| MS.gene050330 | MS.gene30964 | -0.8505 | 1.63E-60 | -1.69E-46 |
| MS.gene050438 | MS.gene30964 | 0.817832 | 2.69E-52 | -1.69E-46 |
| MS.gene050442 | MS.gene30964 | 0.803755 | 3.00E-49 | -1.69E-46 |
| MS.gene050516 | MS.gene30964 | 0.800731 | 1.26E-48 | -1.69E-46 |
| MS.gene050558 | MS.gene30964 | 0.834342 | 3.17E-56 | -1.69E-46 |
| MS.gene050586 | MS.gene30964 | 0.806035 | 1.00E-49 | -1.69E-46 |
| MS.gene050623 | MS.gene30964 | -0.824404 | 8.22E-54 | -1.69E-46 |
| MS.gene050629 | MS.gene30964 | -0.818338 | 2.06E-52 | -1.69E-46 |
| MS.gene050719 | MS.gene30964 | 0.833664 | 4.68E-56 | -1.69E-46 |
| MS.gene050721 | MS.gene30964 | 0.833543 | 5.02E-56 | -1.69E-46 |
| MS.gene050724 | MS.gene30964 | 0.824264 | 8.87E-54 | -1.69E-46 |
| MS.gene050762 | MS.gene30964 | 0.83232 | 1.01E-55 | -1.69E-46 |
| MS.gene050763 | MS.gene30964 | 0.834415 | 3.04E-56 | -1.69E-46 |
| MS.gene050787 | MS.gene30964 | 0.854845 | 9.38E-62 | -1.69E-46 |
| MS.gene050807 | MS.gene30964 | 0.810799 | 9.63E-51 | -1.69E-46 |
| MS.gene050815 | MS.gene30964 | 0.823221 | 1.56E-53 | -1.69E-46 |
| MS.gene050820 | MS.gene30964 | 0.801726 | 7.86E-49 | -1.69E-46 |
| MS.gene050824 | MS.gene30964 | 0.815114 | 1.09E-51 | -1.69E-46 |
| MS.gene050959 | MS.gene30964 | 0.814701 | 1.35E-51 | -1.69E-46 |
| MS.gene051080 | MS.gene30964 | -0.820656 | 6.11E-53 | -1.69E-46 |
| MS.gene05119 | MS.gene30964 | -0.886634 | 2.88E-72 | -1.69E-46 |
| MS.gene051662 | MS.gene30964 | 0.800095 | 1.69E-48 | -1.69E-46 |
| MS.gene051663 | MS.gene30964 | 0.817983 | 2.48E-52 | -1.69E-46 |
| MS.gene051860 | MS.gene30964 | 0.821837 | 3.26E-53 | -1.69E-46 |
| MS.gene052115 | MS.gene30964 | 0.859837 | 3.14E-63 | -1.69E-46 |
| MS.gene052176 | MS.gene30964 | 0.824337 | 8.52E-54 | -1.69E-46 |
| MS.gene052207 | MS.gene30964 | 0.850204 | 1.98E-60 | -1.69E-46 |
| MS.gene052256 | MS.gene30964 | 0.803433 | 3.49E-49 | -1.69E-46 |
| MS.gene052302 | MS.gene30964 | 0.803303 | 3.72E-49 | -1.69E-46 |
| MS.gene052309 | MS.gene30964 | -0.83333 | 5.67E-56 | -1.69E-46 |
| MS.gene052358 | MS.gene30964 | -0.804518 | 2.08E-49 | -1.69E-46 |
| MS.gene052376 | MS.gene30964 | 0.805446 | 1.33E-49 | -1.69E-46 |
| MS.gene052564 | MS.gene30964 | 0.811667 | 6.24E-51 | -1.69E-46 |
| MS.gene052565 | MS.gene30964 | 0.815488 | 9.01E-52 | -1.69E-46 |
| MS.gene052665 | MS.gene30964 | 0.823186 | 1.59E-53 | -1.69E-46 |
| MS.gene052856 | MS.gene30964 | 0.814931 | 1.20E-51 | -1.69E-46 |
| MS.gene052896 | MS.gene30964 | 0.815593 | 8.54E-52 | -1.69E-46 |
| MS.gene053437 | MS.gene30964 | 0.840488 | 8.44E-58 | -1.69E-46 |
| MS.gene053836 | MS.gene30964 | 0.86961 | 2.72E-66 | -1.69E-46 |
| MS.gene053927 | MS.gene30964 | 0.831214 | 1.90E-55 | -1.69E-46 |
| MS.gene054379 | MS.gene30964 | 0.843172 | 1.65E-58 | -1.69E-46 |
| MS.gene054468 | MS.gene30964 | 0.809357 | 1.97E-50 | -1.69E-46 |
| MS.gene054473 | MS.gene30964 | 0.873173 | 1.81E-67 | -1.69E-46 |
| MS.gene054542 | MS.gene30964 | 0.81868 | 1.73E-52 | -1.69E-46 |
| MS.gene054667 | MS.gene30964 | 0.806271 | 8.92E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene30964 | 0.878329 | 3.07E-69 | -1.69E-46 |
| MS.gene054942 | MS.gene30964 | 0.817869 | 2.64E-52 | -1.69E-46 |
| MS.gene055174 | MS.gene30964 | 0.817392 | 3.38E-52 | -1.69E-46 |
| MS.gene055358 | MS.gene30964 | 0.803018 | 4.26E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene30964 | 0.833657 | 4.70E-56 | -1.69E-46 |
| MS.gene055428 | MS.gene30964 | 0.824844 | 6.47E-54 | -1.69E-46 |
| MS.gene055816 | MS.gene30964 | -0.823937 | 1.06E-53 | -1.69E-46 |
| MS.gene055859 | MS.gene30964 | 0.820797 | 5.67E-53 | -1.69E-46 |
| MS.gene056069 | MS.gene30964 | -0.893994 | 3.74E-75 | -1.69E-46 |
| MS.gene056589 | MS.gene30964 | 0.80061 | 1.33E-48 | -1.69E-46 |
| MS.gene056875 | MS.gene30964 | 0.806161 | 9.41E-50 | -1.69E-46 |
| MS.gene057121 | MS.gene30964 | 0.810278 | 1.25E-50 | -1.69E-46 |
| MS.gene057260 | MS.gene30964 | 0.806115 | 9.62E-50 | -1.69E-46 |
| MS.gene057439 | MS.gene30964 | 0.813641 | 2.31E-51 | -1.69E-46 |
| MS.gene057469 | MS.gene30964 | 0.844907 | 5.65E-59 | -1.69E-46 |
| MS.gene05761 | MS.gene30964 | 0.81186 | 5.67E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene30964 | 0.802581 | 5.24E-49 | -1.69E-46 |
| MS.gene05811 | MS.gene30964 | 0.814998 | 1.16E-51 | -1.69E-46 |
| MS.gene058182 | MS.gene30964 | 0.831704 | 1.44E-55 | -1.69E-46 |
| MS.gene058661 | MS.gene30964 | -0.81117 | 8.01E-51 | -1.69E-46 |
| MS.gene058710 | MS.gene30964 | 0.831989 | 1.22E-55 | -1.69E-46 |
| MS.gene058749 | MS.gene30964 | 0.81208 | 5.07E-51 | -1.69E-46 |
| MS.gene058851 | MS.gene30964 | 0.825226 | 5.26E-54 | -1.69E-46 |
| MS.gene058906 | MS.gene30964 | 0.805966 | 1.03E-49 | -1.69E-46 |
| MS.gene059033 | MS.gene30964 | -0.834323 | 3.20E-56 | -1.69E-46 |
| MS.gene059285 | MS.gene30964 | 0.802429 | 5.63E-49 | -1.69E-46 |
| MS.gene059518 | MS.gene30964 | 0.805476 | 1.31E-49 | -1.69E-46 |
| MS.gene059664 | MS.gene30964 | 0.807858 | 4.12E-50 | -1.69E-46 |
| MS.gene059713 | MS.gene30964 | 0.80642 | 8.30E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene30964 | 0.836081 | 1.15E-56 | -1.69E-46 |
| MS.gene059899 | MS.gene30964 | 0.820326 | 7.28E-53 | -1.69E-46 |
| MS.gene060137 | MS.gene30964 | -0.80729 | 5.43E-50 | -1.69E-46 |
| MS.gene060165 | MS.gene30964 | 0.831778 | 1.38E-55 | -1.69E-46 |
| MS.gene060322 | MS.gene30964 | 0.816715 | 4.79E-52 | -1.69E-46 |
| MS.gene060404 | MS.gene30964 | 0.833389 | 5.49E-56 | -1.69E-46 |
| MS.gene060476 | MS.gene30964 | 0.811129 | 8.17E-51 | -1.69E-46 |
| MS.gene060480 | MS.gene30964 | 0.824922 | 6.21E-54 | -1.69E-46 |
| MS.gene060619 | MS.gene30964 | 0.816553 | 5.21E-52 | -1.69E-46 |
| MS.gene060683 | MS.gene30964 | 0.800964 | 1.13E-48 | -1.69E-46 |
| MS.gene061040 | MS.gene30964 | -0.809454 | 1.88E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene31538 | MS.gene30964 | PPI |
| MS.gene064203 | MS.gene30964 | PPI |
| MS.gene45331 | MS.gene30964 | PPI |
| MS.gene043354 | MS.gene30964 | PPI |
| MS.gene028992 | MS.gene30964 | PPI |
| MS.gene046061 | MS.gene30964 | PPI |
| MS.gene069932 | MS.gene30964 | PPI |
| MS.gene35738 | MS.gene30964 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30964.t1 | MTR_2g096920 | 97.945 | 146 | 3 | 0 | 1 | 146 | 1 | 146 | 5.84e-103 | 291 |
| MS.gene30964.t1 | MTR_2g096920 | 95.192 | 104 | 5 | 0 | 1 | 104 | 1 | 104 | 3.38e-70 | 207 |
| MS.gene30964.t1 | MTR_2g096900 | 86.014 | 143 | 20 | 0 | 1 | 143 | 1 | 143 | 6.12e-69 | 205 |
| MS.gene30964.t1 | MTR_4g121900 | 32.680 | 153 | 74 | 3 | 18 | 142 | 24 | 175 | 3.52e-20 | 82.0 |
| MS.gene30964.t1 | MTR_2g034550 | 30.065 | 153 | 79 | 3 | 18 | 142 | 26 | 178 | 7.65e-17 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30964.t1 | AT2G28900 | 61.111 | 144 | 56 | 0 | 1 | 144 | 1 | 144 | 3.44e-65 | 195 |
| MS.gene30964.t1 | AT4G16160 | 28.758 | 153 | 82 | 3 | 18 | 143 | 21 | 173 | 3.31e-17 | 74.3 |
| MS.gene30964.t1 | AT4G16160 | 28.387 | 155 | 82 | 3 | 18 | 143 | 21 | 175 | 6.87e-17 | 73.6 |
Find 46 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTAATCTAGCTGTTGA+TGG | 0.254458 | 2.2:+5221633 | MS.gene30964:CDS |
| ATGCCTTGGAGCAGAATTTC+CGG | 0.262488 | 2.2:+5221561 | MS.gene30964:CDS |
| AACCATCAACAGCTAGATTA+AGG | 0.310083 | 2.2:-5221635 | None:intergenic |
| GTTGATGGTTTCTTGAAGAT+TGG | 0.371740 | 2.2:+5221648 | MS.gene30964:CDS |
| TGTGCAAGGAAGGTGCATAC+TGG | 0.379148 | 2.2:+5222888 | MS.gene30964:CDS |
| ATGATCGGAGGTGCGGTGAC+AGG | 0.380411 | 2.2:+5223393 | MS.gene30964:CDS |
| ATTGCAGTAGATGCCATTAC+AGG | 0.382089 | 2.2:+5223456 | MS.gene30964:CDS |
| GGATCCGTGGCACCAGAGAC+TGG | 0.423846 | 2.2:+5223047 | MS.gene30964:CDS |
| TCTACGCTCACAGGAGCTAT+AGG | 0.430170 | 2.2:+5222989 | MS.gene30964:intron |
| TGCCTTGGAGCAGAATTTCC+GGG | 0.441939 | 2.2:+5221562 | MS.gene30964:CDS |
| GTATATGTTGGAACAGAATA+CGG | 0.442517 | 2.2:+5223016 | MS.gene30964:CDS |
| CGGGTCAGTGTCTTCTCCAC+AGG | 0.444117 | 2.2:+5221581 | MS.gene30964:CDS |
| GTCTTCTCCACAGGTGGATG+TGG | 0.452189 | 2.2:+5221590 | MS.gene30964:CDS |
| TGATCGGAGGTGCGGTGACA+GGG | 0.467838 | 2.2:+5223394 | MS.gene30964:CDS |
| TGTCACCGCACCTCCGATCA+TGG | 0.470776 | 2.2:-5223391 | None:intergenic |
| GTGCAAGGAAGGTGCATACT+GGG | 0.476518 | 2.2:+5222889 | MS.gene30964:CDS |
| TTCAGTTCATTCAGGTAAAG+TGG | 0.477368 | 2.2:-5223512 | None:intergenic |
| TGAGAGAATTACCCAGTCTC+TGG | 0.488901 | 2.2:-5223059 | None:intergenic |
| GGCAATTGCAGCCCCTGTAA+TGG | 0.494547 | 2.2:-5223469 | None:intergenic |
| CTGAAGAAGATGTGCAAGGA+AGG | 0.520056 | 2.2:+5222878 | MS.gene30964:CDS |
| GCTATAGGTGGCGTATATGT+TGG | 0.523978 | 2.2:+5223004 | MS.gene30964:CDS |
| TATATGTTGGAACAGAATAC+GGG | 0.532988 | 2.2:+5223017 | MS.gene30964:CDS |
| GTCAGTGTCTTCTCCACAGG+TGG | 0.548058 | 2.2:+5221584 | MS.gene30964:CDS |
| TTGCAGTAGATGCCATTACA+GGG | 0.565602 | 2.2:+5223457 | MS.gene30964:CDS |
| CTGCAGAAGAATGCCATGAT+CGG | 0.581201 | 2.2:+5223378 | MS.gene30964:intron |
| GATCGGAGGTGCGGTGACAG+GGG | 0.583014 | 2.2:+5223395 | MS.gene30964:CDS |
| ACTCTTTCTGACAATATGAA+AGG | 0.589407 | 2.2:-5221788 | None:intergenic |
| GTTTATGAATTCTGCAGCAG+TGG | 0.590673 | 2.2:-5223490 | None:intergenic |
| TTACCCAGTCTCTGGTGCCA+CGG | 0.593471 | 2.2:-5223051 | None:intergenic |
| GATCCGTGGCACCAGAGACT+GGG | 0.594640 | 2.2:+5223048 | MS.gene30964:CDS |
| AGCTACAAGGGCACTTGCAG+AGG | 0.594831 | 2.2:+5221762 | MS.gene30964:CDS |
| GGTGGATGTGGTCATAGACA+TGG | 0.601669 | 2.2:+5221602 | MS.gene30964:CDS |
| GAACAGAATACGGGGTAGAG+AGG | 0.617900 | 2.2:+5223026 | MS.gene30964:CDS |
| CTGTGGAGAAGACACTGACC+CGG | 0.631326 | 2.2:-5221580 | None:intergenic |
| GACCCGGAAATTCTGCTCCA+AGG | 0.633432 | 2.2:-5221564 | None:intergenic |
| GAATGCCATGATCGGAGGTG+CGG | 0.635353 | 2.2:+5223386 | MS.gene30964:CDS |
| CAGAAGAATGCCATGATCGG+AGG | 0.646513 | 2.2:+5223381 | MS.gene30964:intron |
| TCAACAGCTAGATTAAGGAA+AGG | 0.647866 | 2.2:-5221630 | None:intergenic |
| GTGGATGTGGTCATAGACAT+GGG | 0.661394 | 2.2:+5221603 | MS.gene30964:CDS |
| TCTATGACCACATCCACCTG+TGG | 0.676186 | 2.2:-5221597 | None:intergenic |
| TACGGGGTAGAGAGGATCCG+TGG | 0.679908 | 2.2:+5223034 | MS.gene30964:CDS |
| TGCAAGGAAGGTGCATACTG+GGG | 0.686067 | 2.2:+5222890 | MS.gene30964:CDS |
| ACGCTCACAGGAGCTATAGG+TGG | 0.692992 | 2.2:+5222992 | MS.gene30964:intron |
| TGCAGTAGATGCCATTACAG+GGG | 0.693597 | 2.2:+5223458 | MS.gene30964:CDS |
| GCAGCTGAAGAAGATGTGCA+AGG | 0.725846 | 2.2:+5222874 | MS.gene30964:intron |
| ATATGTTGGAACAGAATACG+GGG | 0.766118 | 2.2:+5223018 | MS.gene30964:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAAATTCATTAATTAAA+GGG | - | chr2.2:5222591-5222610 | None:intergenic | 10.0% |
| !! | GATTGAAATTCATTAATTAA+AGG | - | chr2.2:5222592-5222611 | None:intergenic | 15.0% |
| !!! | TTTTGACAATTTTAACAAAA+GGG | - | chr2.2:5221839-5221858 | None:intergenic | 15.0% |
| !! | AAAGATGAAAAATTTGATTC+TGG | + | chr2.2:5221856-5221875 | MS.gene30964:intron | 20.0% |
| !! | ACAATACTTCAAAAAGAAAA+AGG | - | chr2.2:5221960-5221979 | None:intergenic | 20.0% |
| !! | CAATTAGAAATGTATAAAAC+TGG | - | chr2.2:5222156-5222175 | None:intergenic | 20.0% |
| !! | GAAATTTAACACATTGATAT+TGG | - | chr2.2:5221930-5221949 | None:intergenic | 20.0% |
| !! | TAATAACACAAATCTAAACA+AGG | - | chr2.2:5221903-5221922 | None:intergenic | 20.0% |
| !!! | ATTTAACATTGTTGTTATCA+TGG | + | chr2.2:5222081-5222100 | MS.gene30964:intron | 20.0% |
| !!! | CTTTTGACAATTTTAACAAA+AGG | - | chr2.2:5221840-5221859 | None:intergenic | 20.0% |
| !!! | TAGAGAAAACACTTTATTTT+TGG | + | chr2.2:5223146-5223165 | MS.gene30964:intron | 20.0% |
| ! | AAGATTATCTCTCATTAACA+AGG | - | chr2.2:5222851-5222870 | None:intergenic | 25.0% |
| ! | ATGTTTGGAAATGAATTTAC+TGG | + | chr2.2:5223230-5223249 | MS.gene30964:intron | 25.0% |
| ! | ATTTCTGTTTCGTAAATTTG+AGG | + | chr2.2:5222742-5222761 | MS.gene30964:intron | 25.0% |
| ! | CTTAACTGTCAAATCAAAAT+TGG | + | chr2.2:5222361-5222380 | MS.gene30964:intron | 25.0% |
| ! | GAGAATCTAAATTCTCAAAA+AGG | + | chr2.2:5222500-5222519 | MS.gene30964:intron | 25.0% |
| ! | TGTGAGTAAAATAAGCATTT+CGG | + | chr2.2:5222533-5222552 | MS.gene30964:intron | 25.0% |
| ! | TGTTTGGAAATGAATTTACT+GGG | + | chr2.2:5223231-5223250 | MS.gene30964:intron | 25.0% |
| ! | TTATTAACAAGCATCATGTT+TGG | + | chr2.2:5223215-5223234 | MS.gene30964:intron | 25.0% |
| ! | TTGTGTTGCATTATGTAATA+TGG | + | chr2.2:5222919-5222938 | MS.gene30964:intron | 25.0% |
| ! | TTTCTGTTTCGTAAATTTGA+GGG | + | chr2.2:5222743-5222762 | MS.gene30964:intron | 25.0% |
| !! | AAATATCAGCATAGATTTTC+AGG | - | chr2.2:5222133-5222152 | None:intergenic | 25.0% |
| !! | ATTGTGAGTATTTTACAGAT+TGG | + | chr2.2:5222172-5222191 | MS.gene30964:intron | 25.0% |
| !!! | ACATATAACCTTTGAAATTG+TGG | + | chr2.2:5222686-5222705 | MS.gene30964:intron | 25.0% |
| !!! | TTATCATGGTTGATTCTTTT+GGG | + | chr2.2:5222095-5222114 | MS.gene30964:intron | 25.0% |
| ACACATAACCTTTCAATTCA+AGG | + | chr2.2:5222713-5222732 | MS.gene30964:intron | 30.0% | |
| ACTCTTTCTGACAATATGAA+AGG | - | chr2.2:5221791-5221810 | None:intergenic | 30.0% | |
| ATTTAGTCCCTTGAATTGAA+AGG | - | chr2.2:5222724-5222743 | None:intergenic | 30.0% | |
| CACATAACCTTTCAATTCAA+GGG | + | chr2.2:5222714-5222733 | MS.gene30964:intron | 30.0% | |
| GTATATGTTGGAACAGAATA+CGG | + | chr2.2:5223016-5223035 | MS.gene30964:CDS | 30.0% | |
| TAGATAAGCGATGATGAAAA+AGG | - | chr2.2:5222223-5222242 | None:intergenic | 30.0% | |
| TATATGTTGGAACAGAATAC+GGG | + | chr2.2:5223017-5223036 | MS.gene30964:CDS | 30.0% | |
| TATTTATCAAAGTCTGAACG+CGG | - | chr2.2:5222392-5222411 | None:intergenic | 30.0% | |
| TCTAAATTCTCAAAAAGGCA+TGG | + | chr2.2:5222505-5222524 | MS.gene30964:intron | 30.0% | |
| TCTTAGCTAGGGAAAAATAA+TGG | + | chr2.2:5222272-5222291 | MS.gene30964:intron | 30.0% | |
| TTCTGTTTCGTAAATTTGAG+GGG | + | chr2.2:5222744-5222763 | MS.gene30964:intron | 30.0% | |
| ! | ATCTGGATTCTCTCATTTTA+GGG | + | chr2.2:5222310-5222329 | MS.gene30964:intron | 30.0% |
| ! | CTAAATTCTCAAAAAGGCAT+GGG | + | chr2.2:5222506-5222525 | MS.gene30964:intron | 30.0% |
| ! | GTATCATCATCTTTGCATTT+TGG | - | chr2.2:5222418-5222437 | None:intergenic | 30.0% |
| ! | TGTGTACACTTTCTTTTAGA+CGG | + | chr2.2:5223263-5223282 | MS.gene30964:intron | 30.0% |
| !! | AGTCTTTCATTGACTTTGAT+AGG | - | chr2.2:5222627-5222646 | None:intergenic | 30.0% |
| !! | GTTATCATGGTTGATTCTTT+TGG | + | chr2.2:5222094-5222113 | MS.gene30964:intron | 30.0% |
| !! | TATCATGGTTGATTCTTTTG+GGG | + | chr2.2:5222096-5222115 | MS.gene30964:intron | 30.0% |
| !! | TTGATTTGTCAGTATAGATC+CGG | + | chr2.2:5222453-5222472 | MS.gene30964:intron | 30.0% |
| !! | TTTCATTGACTTTGATAGGA+GGG | - | chr2.2:5222623-5222642 | None:intergenic | 30.0% |
| AACCATCAACAGCTAGATTA+AGG | - | chr2.2:5221638-5221657 | None:intergenic | 35.0% | |
| AACCTGAAAAAGAAGAAGGT+TGG | - | chr2.2:5221740-5221759 | None:intergenic | 35.0% | |
| ACTGGGTAATTCTCTCAATA+GGG | + | chr2.2:5223065-5223084 | MS.gene30964:intron | 35.0% | |
| ATATGTTGGAACAGAATACG+GGG | + | chr2.2:5223018-5223037 | MS.gene30964:CDS | 35.0% | |
| ATTTATCAAAGTCTGAACGC+GGG | - | chr2.2:5222391-5222410 | None:intergenic | 35.0% | |
| CTTATCTAAGAGTAGAGTGT+TGG | + | chr2.2:5222235-5222254 | MS.gene30964:intron | 35.0% | |
| GCAGTACATCAAAAGACAAA+GGG | - | chr2.2:5223362-5223381 | None:intergenic | 35.0% | |
| GCGTTCAGACTTTGATAAAT+AGG | + | chr2.2:5222391-5222410 | MS.gene30964:intron | 35.0% | |
| TAACAAAACATGTCTGTTCC+AGG | + | chr2.2:5222007-5222026 | MS.gene30964:intron | 35.0% | |
| TCAACAGCTAGATTAAGGAA+AGG | - | chr2.2:5221633-5221652 | None:intergenic | 35.0% | |
| TCATTACTTGAAACACTTCC+TGG | - | chr2.2:5222028-5222047 | None:intergenic | 35.0% | |
| TGCAGTACATCAAAAGACAA+AGG | - | chr2.2:5223363-5223382 | None:intergenic | 35.0% | |
| TTCCTTAATCTAGCTGTTGA+TGG | + | chr2.2:5221633-5221652 | MS.gene30964:CDS | 35.0% | |
| ! | AACCAACCTTCTTCTTTTTC+AGG | + | chr2.2:5221735-5221754 | MS.gene30964:intron | 35.0% |
| ! | AACCAGCTTGTACAATTTTG+AGG | + | chr2.2:5222775-5222794 | MS.gene30964:intron | 35.0% |
| ! | GATCTGGATTCTCTCATTTT+AGG | + | chr2.2:5222309-5222328 | MS.gene30964:intron | 35.0% |
| ! | TGAAAAAGAAGAAGGTTGGT+TGG | - | chr2.2:5221736-5221755 | None:intergenic | 35.0% |
| !! | CTTTCATTGACTTTGATAGG+AGG | - | chr2.2:5222624-5222643 | None:intergenic | 35.0% |
| !! | GTTGATGGTTTCTTGAAGAT+TGG | + | chr2.2:5221648-5221667 | MS.gene30964:CDS | 35.0% |
| !! | TAAGAGTAGAGTGTTGGATT+GGG | + | chr2.2:5222241-5222260 | MS.gene30964:intron | 35.0% |
| !!! | CTTGTCTTTTTTGTTGTTGC+TGG | - | chr2.2:5223436-5223455 | None:intergenic | 35.0% |
| AAAAGACAAAGGGAACAGAG+TGG | - | chr2.2:5223352-5223371 | None:intergenic | 40.0% | |
| AGCTAGGGAAAAATAATGGC+AGG | + | chr2.2:5222276-5222295 | MS.gene30964:intron | 40.0% | |
| ATGAGAGAATCCAGATCTAG+AGG | - | chr2.2:5222306-5222325 | None:intergenic | 40.0% | |
| ATTGCAGTAGATGCCATTAC+AGG | + | chr2.2:5223456-5223475 | MS.gene30964:CDS | 40.0% | |
| CAAAAGGGCTATAGCAAAAG+TGG | - | chr2.2:5221824-5221843 | None:intergenic | 40.0% | |
| CTGCAACCTGAAAAAGAAGA+AGG | - | chr2.2:5221744-5221763 | None:intergenic | 40.0% | |
| GACTGGGTAATTCTCTCAAT+AGG | + | chr2.2:5223064-5223083 | MS.gene30964:intron | 40.0% | |
| GCTAGGGAAAAATAATGGCA+GGG | + | chr2.2:5222277-5222296 | MS.gene30964:intron | 40.0% | |
| GTCCTCAAAATTGTACAAGC+TGG | - | chr2.2:5222780-5222799 | None:intergenic | 40.0% | |
| GTGTAGCACCACAATTTCAA+AGG | - | chr2.2:5222697-5222716 | None:intergenic | 40.0% | |
| GTTTATGAATTCTGCAGCAG+TGG | - | chr2.2:5223493-5223512 | None:intergenic | 40.0% | |
| TCAGTTGAGAGTCTTACCTA+AGG | + | chr2.2:5223325-5223344 | MS.gene30964:intron | 40.0% | |
| TTGCAGTAGATGCCATTACA+GGG | + | chr2.2:5223457-5223476 | MS.gene30964:CDS | 40.0% | |
| TTTCGGTCTTCGAAATTGCA+AGG | + | chr2.2:5222550-5222569 | MS.gene30964:intron | 40.0% | |
| ! | ATTTTCCTTTCTACGCTCAC+AGG | + | chr2.2:5222980-5222999 | MS.gene30964:intron | 40.0% |
| !! | CTAAGAGTAGAGTGTTGGAT+TGG | + | chr2.2:5222240-5222259 | MS.gene30964:intron | 40.0% |
| !!! | TTTTCAGGTTGCAGCTACAA+GGG | + | chr2.2:5221750-5221769 | MS.gene30964:intron | 40.0% |
| !!! | TTTTTCAGGTTGCAGCTACA+AGG | + | chr2.2:5221749-5221768 | MS.gene30964:intron | 40.0% |
| ATGCCTTGGAGCAGAATTTC+CGG | + | chr2.2:5221561-5221580 | MS.gene30964:CDS | 45.0% | |
| CTGAAGAAGATGTGCAAGGA+AGG | + | chr2.2:5222878-5222897 | MS.gene30964:CDS | 45.0% | |
| CTGCAGAAGAATGCCATGAT+CGG | + | chr2.2:5223378-5223397 | MS.gene30964:intron | 45.0% | |
| GCTATAGGTGGCGTATATGT+TGG | + | chr2.2:5223004-5223023 | MS.gene30964:CDS | 45.0% | |
| GGGTAATTCTCTCAATAGGG+TGG | + | chr2.2:5223068-5223087 | MS.gene30964:intron | 45.0% | |
| GTGGATGTGGTCATAGACAT+GGG | + | chr2.2:5221603-5221622 | MS.gene30964:CDS | 45.0% | |
| TGAGAGAATTACCCAGTCTC+TGG | - | chr2.2:5223062-5223081 | None:intergenic | 45.0% | |
| TGCAGTAGATGCCATTACAG+GGG | + | chr2.2:5223458-5223477 | MS.gene30964:CDS | 45.0% | |
| !! | GGGAGGTTTAGTCTTAGCTA+GGG | + | chr2.2:5222261-5222280 | MS.gene30964:intron | 45.0% |
| !! | TGGGAGGTTTAGTCTTAGCT+AGG | + | chr2.2:5222260-5222279 | MS.gene30964:intron | 45.0% |
| AAGGGAACAGAGTGGTCCTT+AGG | - | chr2.2:5223344-5223363 | None:intergenic | 50.0% | |
| CAGAAGAATGCCATGATCGG+AGG | + | chr2.2:5223381-5223400 | MS.gene30964:intron | 50.0% | |
| GAACAGAATACGGGGTAGAG+AGG | + | chr2.2:5223026-5223045 | MS.gene30964:CDS | 50.0% | |
| GCAGCTGAAGAAGATGTGCA+AGG | + | chr2.2:5222874-5222893 | MS.gene30964:intron | 50.0% | |
| GGTGGATGTGGTCATAGACA+TGG | + | chr2.2:5221602-5221621 | MS.gene30964:CDS | 50.0% | |
| TAGCTCCTGTGAGCGTAGAA+AGG | - | chr2.2:5222988-5223007 | None:intergenic | 50.0% | |
| TCTACGCTCACAGGAGCTAT+AGG | + | chr2.2:5222989-5223008 | MS.gene30964:intron | 50.0% | |
| TCTATGACCACATCCACCTG+TGG | - | chr2.2:5221600-5221619 | None:intergenic | 50.0% | |
| TGCCTTGGAGCAGAATTTCC+GGG | + | chr2.2:5221562-5221581 | MS.gene30964:CDS | 50.0% | |
| TGGACTTGTCGTCAACGTGA+TGG | + | chr2.2:5223166-5223185 | MS.gene30964:intron | 50.0% | |
| ! | GTGCAAGGAAGGTGCATACT+GGG | + | chr2.2:5222889-5222908 | MS.gene30964:CDS | 50.0% |
| ! | TGCAAGGAAGGTGCATACTG+GGG | + | chr2.2:5222890-5222909 | MS.gene30964:CDS | 50.0% |
| ! | TGTGCAAGGAAGGTGCATAC+TGG | + | chr2.2:5222888-5222907 | MS.gene30964:CDS | 50.0% |
| !! | GAGTAGAGTGTTGGATTGGG+AGG | + | chr2.2:5222244-5222263 | MS.gene30964:intron | 50.0% |
| ACGCTCACAGGAGCTATAGG+TGG | + | chr2.2:5222992-5223011 | MS.gene30964:intron | 55.0% | |
| CTGTGGAGAAGACACTGACC+CGG | - | chr2.2:5221583-5221602 | None:intergenic | 55.0% | |
| GAATGCCATGATCGGAGGTG+CGG | + | chr2.2:5223386-5223405 | MS.gene30964:CDS | 55.0% | |
| GACCCGGAAATTCTGCTCCA+AGG | - | chr2.2:5221567-5221586 | None:intergenic | 55.0% | |
| GGCAATTGCAGCCCCTGTAA+TGG | - | chr2.2:5223472-5223491 | None:intergenic | 55.0% | |
| GGCAGGGAAACCTCTAGATC+TGG | + | chr2.2:5222293-5222312 | MS.gene30964:intron | 55.0% | |
| GTCAGTGTCTTCTCCACAGG+TGG | + | chr2.2:5221584-5221603 | MS.gene30964:CDS | 55.0% | |
| GTCTTCTCCACAGGTGGATG+TGG | + | chr2.2:5221590-5221609 | MS.gene30964:CDS | 55.0% | |
| TCATGCACTCGTACAGCTGC+CGG | - | chr2.2:5222475-5222494 | None:intergenic | 55.0% | |
| ! | TTACCCAGTCTCTGGTGCCA+CGG | - | chr2.2:5223054-5223073 | None:intergenic | 55.0% |
| !! | AGCTACAAGGGCACTTGCAG+AGG | + | chr2.2:5221762-5221781 | MS.gene30964:CDS | 55.0% |
| CGGGTCAGTGTCTTCTCCAC+AGG | + | chr2.2:5221581-5221600 | MS.gene30964:CDS | 60.0% | |
| GATCCGTGGCACCAGAGACT+GGG | + | chr2.2:5223048-5223067 | MS.gene30964:CDS | 60.0% | |
| TACGGGGTAGAGAGGATCCG+TGG | + | chr2.2:5223034-5223053 | MS.gene30964:CDS | 60.0% | |
| TGTCACCGCACCTCCGATCA+TGG | - | chr2.2:5223394-5223413 | None:intergenic | 60.0% | |
| ! | ATGATCGGAGGTGCGGTGAC+AGG | + | chr2.2:5223393-5223412 | MS.gene30964:CDS | 60.0% |
| ! | TGATCGGAGGTGCGGTGACA+GGG | + | chr2.2:5223394-5223413 | MS.gene30964:CDS | 60.0% |
| GGATCCGTGGCACCAGAGAC+TGG | + | chr2.2:5223047-5223066 | MS.gene30964:CDS | 65.0% | |
| ! | GATCGGAGGTGCGGTGACAG+GGG | + | chr2.2:5223395-5223414 | MS.gene30964:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 5221561 | 5223524 | 5221561 | ID=MS.gene30964 |
| chr2.2 | mRNA | 5221561 | 5223524 | 5221561 | ID=MS.gene30964.t1;Parent=MS.gene30964 |
| chr2.2 | exon | 5221561 | 5221674 | 5221561 | ID=MS.gene30964.t1.exon1;Parent=MS.gene30964.t1 |
| chr2.2 | CDS | 5221561 | 5221674 | 5221561 | ID=cds.MS.gene30964.t1;Parent=MS.gene30964.t1 |
| chr2.2 | exon | 5221757 | 5221808 | 5221757 | ID=MS.gene30964.t1.exon2;Parent=MS.gene30964.t1 |
| chr2.2 | CDS | 5221757 | 5221808 | 5221757 | ID=cds.MS.gene30964.t1;Parent=MS.gene30964.t1 |
| chr2.2 | exon | 5222029 | 5222060 | 5222029 | ID=MS.gene30964.t1.exon3;Parent=MS.gene30964.t1 |
| chr2.2 | CDS | 5222029 | 5222060 | 5222029 | ID=cds.MS.gene30964.t1;Parent=MS.gene30964.t1 |
| chr2.2 | exon | 5222878 | 5222911 | 5222878 | ID=MS.gene30964.t1.exon4;Parent=MS.gene30964.t1 |
| chr2.2 | CDS | 5222878 | 5222911 | 5222878 | ID=cds.MS.gene30964.t1;Parent=MS.gene30964.t1 |
| chr2.2 | exon | 5223002 | 5223069 | 5223002 | ID=MS.gene30964.t1.exon5;Parent=MS.gene30964.t1 |
| chr2.2 | CDS | 5223002 | 5223069 | 5223002 | ID=cds.MS.gene30964.t1;Parent=MS.gene30964.t1 |
| chr2.2 | exon | 5223384 | 5223524 | 5223384 | ID=MS.gene30964.t1.exon6;Parent=MS.gene30964.t1 |
| chr2.2 | CDS | 5223384 | 5223524 | 5223384 | ID=cds.MS.gene30964.t1;Parent=MS.gene30964.t1 |
| Gene Sequence |
| Protein sequence |
