Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053960.t1 | KEH27916.1 | 97.2 | 252 | 7 | 0 | 1 | 252 | 2 | 253 | 1.80E-135 | 491.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053960.t1 | Q8W4Y5 | 70.2 | 252 | 73 | 1 | 1 | 252 | 46 | 295 | 6.1e-100 | 365.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053960.t1 | A0A072UET0 | 97.2 | 252 | 7 | 0 | 1 | 252 | 2 | 253 | 1.3e-135 | 491.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052286 | MS.gene053960 | 0.805312 | 1.42E-49 | -1.69E-46 |
| MS.gene053960 | MS.gene053962 | 0.967319 | 4.10E-127 | -1.69E-46 |
| MS.gene053960 | MS.gene054994 | 0.803312 | 3.70E-49 | -1.69E-46 |
| MS.gene053960 | MS.gene068828 | 0.952179 | 4.23E-110 | -1.69E-46 |
| MS.gene053960 | MS.gene068829 | 0.828309 | 9.66E-55 | -1.69E-46 |
| MS.gene053960 | MS.gene28498 | 0.806698 | 7.25E-50 | -1.69E-46 |
| MS.gene053960 | MS.gene72149 | 0.806 | 1.02E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053960.t1 | MTR_5g049240 | 97.222 | 252 | 7 | 0 | 1 | 252 | 2 | 253 | 0.0 | 502 |
| MS.gene053960.t1 | MTR_5g049240 | 97.222 | 252 | 7 | 0 | 1 | 252 | 47 | 298 | 0.0 | 501 |
| MS.gene053960.t1 | MTR_5g049230 | 87.649 | 251 | 31 | 0 | 1 | 251 | 47 | 297 | 7.36e-161 | 448 |
| MS.gene053960.t1 | MTR_8g069850 | 74.603 | 252 | 64 | 0 | 1 | 252 | 47 | 298 | 1.22e-140 | 397 |
| MS.gene053960.t1 | MTR_4g086150 | 42.913 | 254 | 134 | 4 | 2 | 252 | 42 | 287 | 4.00e-63 | 201 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053960.t1 | AT1G13580 | 69.841 | 252 | 76 | 0 | 1 | 252 | 47 | 298 | 6.08e-127 | 362 |
| MS.gene053960.t1 | AT1G13580 | 69.841 | 252 | 76 | 0 | 1 | 252 | 47 | 298 | 6.08e-127 | 362 |
| MS.gene053960.t1 | AT3G25540 | 63.306 | 248 | 88 | 2 | 5 | 252 | 56 | 300 | 1.35e-114 | 331 |
| MS.gene053960.t1 | AT3G25540 | 63.306 | 248 | 88 | 2 | 5 | 252 | 56 | 300 | 1.35e-114 | 331 |
| MS.gene053960.t1 | AT1G26200 | 58.687 | 259 | 97 | 3 | 1 | 252 | 46 | 301 | 9.98e-106 | 308 |
| MS.gene053960.t1 | AT1G26200 | 55.185 | 270 | 100 | 3 | 1 | 252 | 46 | 312 | 1.43e-102 | 301 |
| MS.gene053960.t1 | AT1G13580 | 70.833 | 192 | 56 | 0 | 1 | 192 | 47 | 238 | 3.44e-96 | 282 |
| MS.gene053960.t1 | AT3G25540 | 65.426 | 188 | 63 | 1 | 5 | 192 | 56 | 241 | 1.06e-90 | 268 |
| MS.gene053960.t1 | AT1G26200 | 60.938 | 192 | 72 | 1 | 1 | 192 | 46 | 234 | 1.26e-83 | 249 |
| MS.gene053960.t1 | AT3G19260 | 47.619 | 231 | 114 | 2 | 22 | 252 | 66 | 289 | 4.71e-70 | 217 |
Find 39 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATACTTGCTTTAATATTC+TGG | 0.136312 | 5.3:+40960526 | MS.gene053960:CDS |
| AAAGAAGATTAGGAAATTTA+AGG | 0.149891 | 5.3:+40960169 | MS.gene053960:CDS |
| CGACGCTACTGATGTGTTTC+TGG | 0.166561 | 5.3:+40962712 | MS.gene053960:CDS |
| TGCTTGTTCTTAATATTTAT+TGG | 0.221668 | 5.3:+40964513 | MS.gene053960:CDS |
| CCAGAATATTAAAGCAAGTA+TGG | 0.250823 | 5.3:-40960526 | None:intergenic |
| GCATCATTTACTACCCATTC+TGG | 0.256348 | 5.3:+40962822 | MS.gene053960:CDS |
| GGTGATTGACACCTTGAAAT+TGG | 0.282939 | 5.3:+40964430 | MS.gene053960:CDS |
| TGATTCTGCACCGCTGTATA+TGG | 0.289604 | 5.3:-40962750 | None:intergenic |
| GCACTCAGGTTTGTTCGAAT+TGG | 0.314114 | 5.3:+40962668 | MS.gene053960:intron |
| TGGTCCAAGACAAGACAAAA+AGG | 0.376327 | 5.3:-40962793 | None:intergenic |
| CATACTTGCTTTAATATTCT+GGG | 0.380439 | 5.3:+40960527 | MS.gene053960:CDS |
| GTTGGTCAAATCTGCGCAAA+AGG | 0.396663 | 5.3:+40964560 | MS.gene053960:CDS |
| CTGATGCTTCGGATGCTTGT+TGG | 0.406436 | 5.3:+40964542 | MS.gene053960:CDS |
| CAGATGCTTGTCCAATTTCA+AGG | 0.422664 | 5.3:-40964441 | None:intergenic |
| TCGGGCCAGGGAATCAGATA+TGG | 0.427253 | 5.3:+40960291 | MS.gene053960:CDS |
| ATGATACGAGAAAGAAGATT+AGG | 0.436397 | 5.3:+40960159 | MS.gene053960:CDS |
| CTTGAAATTGGACAAGCATC+TGG | 0.449431 | 5.3:+40964442 | MS.gene053960:CDS |
| CATCATTTACTACCCATTCT+GGG | 0.450526 | 5.3:+40962823 | MS.gene053960:CDS |
| ATTGGTGGGTGCTGATGCTT+CGG | 0.460019 | 5.3:+40964531 | MS.gene053960:CDS |
| ACTGATGTGTTTCTGGAGAT+AGG | 0.473929 | 5.3:+40962719 | MS.gene053960:CDS |
| GTTAGTGAAGATATTAGATC+TGG | 0.474457 | 5.3:+40964587 | MS.gene053960:CDS |
| TCTGGGTTCTTCGAAGTACA+AGG | 0.495871 | 5.3:+40962840 | MS.gene053960:CDS |
| TTGTTCTTAATATTTATTGG+TGG | 0.510641 | 5.3:+40964516 | MS.gene053960:CDS |
| TCTGGCCATATCTGATTCCC+TGG | 0.512470 | 5.3:-40960296 | None:intergenic |
| TGTTCTTAATATTTATTGGT+GGG | 0.517092 | 5.3:+40964517 | MS.gene053960:CDS |
| GGGCTGTATATGTATGGTGC+TGG | 0.521303 | 5.3:+40960489 | MS.gene053960:CDS |
| TTGGTCAAATCTGCGCAAAA+GGG | 0.554148 | 5.3:+40964561 | MS.gene053960:CDS |
| TTGAAGGGGCTGTATATGTA+TGG | 0.554283 | 5.3:+40960483 | MS.gene053960:CDS |
| TACTTCGAAGAACCCAGAAT+GGG | 0.559855 | 5.3:-40962835 | None:intergenic |
| ACACATCAGTAGCGTCGTGA+AGG | 0.571391 | 5.3:-40962706 | None:intergenic |
| CTGCAACATATGATGAACCT+TGG | 0.572580 | 5.3:+40960243 | MS.gene053960:CDS |
| CACATCAGTAGCGTCGTGAA+GGG | 0.597324 | 5.3:-40962705 | None:intergenic |
| GTACTTCGAAGAACCCAGAA+TGG | 0.597437 | 5.3:-40962836 | None:intergenic |
| GGAAATTTAAGGAATCAGCA+TGG | 0.606420 | 5.3:+40960180 | MS.gene053960:CDS |
| GTAGTAAATGATGCGCAGTA+TGG | 0.606821 | 5.3:-40962813 | None:intergenic |
| ATTTGCAGAAAGTGGCCAGA+CGG | 0.612078 | 5.3:+40960093 | None:intergenic |
| AGAGACAACATGATGTGTCA+TGG | 0.614305 | 5.3:-40960577 | None:intergenic |
| GAAATTGGACAAGCATCTGG+TGG | 0.641961 | 5.3:+40964445 | MS.gene053960:CDS |
| GGCAAAATGTCCATATACAG+CGG | 0.676062 | 5.3:+40962740 | MS.gene053960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAAAAAAATATTACATT+TGG | + | chr5.3:40963817-40963836 | MS.gene053960:intron | 10.0% |
| !! | ATTAAATTAAATTTGAACAA+TGG | - | chr5.3:40964371-40964390 | None:intergenic | 10.0% |
| !! | AAAAAATAAAAAAAAGAGCA+AGG | - | chr5.3:40963285-40963304 | None:intergenic | 15.0% |
| !! | ATATTAAAACGAAAAAAAGA+AGG | + | chr5.3:40960759-40960778 | MS.gene053960:intron | 15.0% |
| !! | TATAAGCTTATTAGTATTTA+TGG | + | chr5.3:40963584-40963603 | MS.gene053960:intron | 15.0% |
| !! | TATTAAAACGAAAAAAAGAA+GGG | + | chr5.3:40960760-40960779 | MS.gene053960:intron | 15.0% |
| !! | TGAAATTCATATTTCAAAAA+AGG | + | chr5.3:40962915-40962934 | MS.gene053960:intron | 15.0% |
| !! | TTCAATCTGAAAATTAAAAA+TGG | - | chr5.3:40960462-40960481 | None:intergenic | 15.0% |
| !!! | AATTTTGCTTTAAAATAATC+TGG | + | chr5.3:40961427-40961446 | MS.gene053960:intron | 15.0% |
| !!! | ATTTTGCTTTAAAATAATCT+GGG | + | chr5.3:40961428-40961447 | MS.gene053960:intron | 15.0% |
| !!! | TACTGATACAAAATATTTTT+GGG | + | chr5.3:40960268-40960287 | MS.gene053960:CDS | 15.0% |
| !!! | TTACTGATACAAAATATTTT+TGG | + | chr5.3:40960267-40960286 | MS.gene053960:CDS | 15.0% |
| !! | AAAGAAGATTAGGAAATTTA+AGG | + | chr5.3:40960169-40960188 | MS.gene053960:CDS | 20.0% |
| !! | AAATAAAATAAAGTTAGTGC+AGG | - | chr5.3:40960711-40960730 | None:intergenic | 20.0% |
| !! | AAATTGAACTTCCAATTTAA+AGG | - | chr5.3:40963219-40963238 | None:intergenic | 20.0% |
| !! | AATTGAACTTCCAATTTAAA+GGG | - | chr5.3:40963218-40963237 | None:intergenic | 20.0% |
| !! | AGGAAAACAAAATGTAAATT+CGG | - | chr5.3:40962883-40962902 | None:intergenic | 20.0% |
| !! | TAAAGAACAAACCTAAAATT+AGG | + | chr5.3:40960819-40960838 | MS.gene053960:intron | 20.0% |
| !! | TGCTTGTTCTTAATATTTAT+TGG | + | chr5.3:40964513-40964532 | MS.gene053960:CDS | 20.0% |
| !! | TGTTCTTAATATTTATTGGT+GGG | + | chr5.3:40964517-40964536 | MS.gene053960:CDS | 20.0% |
| !! | TTACCATTGCATAAAAATTA+AGG | - | chr5.3:40963249-40963268 | None:intergenic | 20.0% |
| !! | TTGTTCTTAATATTTATTGG+TGG | + | chr5.3:40964516-40964535 | MS.gene053960:CDS | 20.0% |
| !! | TTTATATAATCACTTAATGC+AGG | + | chr5.3:40963413-40963432 | MS.gene053960:intron | 20.0% |
| !! | TTTCAAACCCAATAAAAAAT+TGG | - | chr5.3:40964219-40964238 | None:intergenic | 20.0% |
| !!! | AACTTTAACTTATCTAGAAT+AGG | + | chr5.3:40962044-40962063 | MS.gene053960:intron | 20.0% |
| !!! | AATCTGAAGTAGTAAATTTA+TGG | + | chr5.3:40963538-40963557 | MS.gene053960:intron | 20.0% |
| !!! | AATTTTCAGATTGAAATTGA+AGG | + | chr5.3:40960467-40960486 | MS.gene053960:intron | 20.0% |
| !!! | ATTTTCAGATTGAAATTGAA+GGG | + | chr5.3:40960468-40960487 | MS.gene053960:intron | 20.0% |
| !!! | CAGGTTTTTTTATTCATAAA+CGG | - | chr5.3:40963104-40963123 | None:intergenic | 20.0% |
| !!! | GAATTTTCAGTTTGAATTAT+AGG | + | chr5.3:40961367-40961386 | MS.gene053960:intron | 20.0% |
| !!! | TAGGTTTCCAATTTTTTATT+GGG | + | chr5.3:40964209-40964228 | MS.gene053960:intron | 20.0% |
| !!! | TCTTGATGATTTACTATTAT+AGG | + | chr5.3:40963377-40963396 | MS.gene053960:intron | 20.0% |
| !!! | TTAGGTTTCCAATTTTTTAT+TGG | + | chr5.3:40964208-40964227 | MS.gene053960:intron | 20.0% |
| !!! | TTCATACATATTTTAAGAGT+AGG | - | chr5.3:40961062-40961081 | None:intergenic | 20.0% |
| !!! | TTCATACATATTTTTAGAGT+AGG | - | chr5.3:40960960-40960979 | None:intergenic | 20.0% |
| !!! | TTCTGTTTTGAACATAATTT+TGG | - | chr5.3:40963004-40963023 | None:intergenic | 20.0% |
| !!! | TTTAGGTTTGTTCTTTAATT+GGG | - | chr5.3:40960816-40960835 | None:intergenic | 20.0% |
| !!! | TTTGAAATATGAATTTCAAC+AGG | - | chr5.3:40962913-40962932 | None:intergenic | 20.0% |
| !!! | TTTTAGGTTTGTTCTTTAAT+TGG | - | chr5.3:40960817-40960836 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTGAAAGATTATT+TGG | - | chr5.3:40962417-40962436 | None:intergenic | 20.0% |
| ! | AAATATTACATTTGGCAGTT+AGG | + | chr5.3:40963825-40963844 | MS.gene053960:intron | 25.0% |
| ! | AACAAAATGTAAATTCGGAA+CGG | - | chr5.3:40962878-40962897 | None:intergenic | 25.0% |
| ! | AACACCTAGATATATAAAAG+GGG | + | chr5.3:40962096-40962115 | MS.gene053960:intron | 25.0% |
| ! | AAGAAAACATGATGAACAAT+TGG | + | chr5.3:40961654-40961673 | MS.gene053960:intron | 25.0% |
| ! | AATAACAATTTGTACAAGTG+TGG | - | chr5.3:40963661-40963680 | None:intergenic | 25.0% |
| ! | AATTTACTACTTCAGATTAC+AGG | - | chr5.3:40963536-40963555 | None:intergenic | 25.0% |
| ! | ACTGCTGAATTAATAAACTT+AGG | - | chr5.3:40960437-40960456 | None:intergenic | 25.0% |
| ! | AGCAAGAAAAATCAATAATC+AGG | + | chr5.3:40962442-40962461 | MS.gene053960:intron | 25.0% |
| ! | ATAAAAATATTTGTGTGGAG+TGG | - | chr5.3:40961873-40961892 | None:intergenic | 25.0% |
| ! | ATAGCAGATTATACATTAGA+TGG | - | chr5.3:40961466-40961485 | None:intergenic | 25.0% |
| ! | CATACTTGCTTTAATATTCT+GGG | + | chr5.3:40960527-40960546 | MS.gene053960:CDS | 25.0% |
| ! | CATTCAACAAACAAAGTTTA+GGG | + | chr5.3:40962469-40962488 | MS.gene053960:intron | 25.0% |
| ! | CTTGCATAAAAATATTTGTG+TGG | - | chr5.3:40961878-40961897 | None:intergenic | 25.0% |
| ! | GAACACCTAGATATATAAAA+GGG | + | chr5.3:40962095-40962114 | MS.gene053960:intron | 25.0% |
| ! | GAAGAAAACAATTAAACAGA+AGG | - | chr5.3:40964394-40964413 | None:intergenic | 25.0% |
| ! | TACCTTCTTTATCATCTAAA+GGG | - | chr5.3:40963074-40963093 | None:intergenic | 25.0% |
| ! | TTACCTTCTTTATCATCTAA+AGG | - | chr5.3:40963075-40963094 | None:intergenic | 25.0% |
| ! | TTTCCTTCAGAATTTATACT+TGG | - | chr5.3:40961929-40961948 | None:intergenic | 25.0% |
| ! | TTTCTTAAGCAGAAAAAGTT+TGG | + | chr5.3:40963439-40963458 | MS.gene053960:intron | 25.0% |
| !! | AGTCCTTAATTTTTATGCAA+TGG | + | chr5.3:40963243-40963262 | MS.gene053960:intron | 25.0% |
| !! | ATCTTTGTTTCAGAGAAATT+TGG | - | chr5.3:40962570-40962589 | None:intergenic | 25.0% |
| !! | TATTTTGTATCAGTAAACCA+AGG | - | chr5.3:40960263-40960282 | None:intergenic | 25.0% |
| !! | TCATACTTTTCCCTTTAAAT+TGG | + | chr5.3:40963205-40963224 | MS.gene053960:intron | 25.0% |
| !! | TCTTACTTAATCTTTTGATC+TGG | - | chr5.3:40960317-40960336 | None:intergenic | 25.0% |
| !! | TTCTACTTTAGAGATTTGTT+AGG | - | chr5.3:40960849-40960868 | None:intergenic | 25.0% |
| !! | TTGTGTTATCGTACATTTTT+AGG | + | chr5.3:40960610-40960629 | MS.gene053960:CDS | 25.0% |
| !! | TTTTCAAACCACTTAATGAA+GGG | - | chr5.3:40961806-40961825 | None:intergenic | 25.0% |
| !! | TTTTCAGATTGAAATTGAAG+GGG | + | chr5.3:40960469-40960488 | MS.gene053960:intron | 25.0% |
| !! | TTTTTCTGCAGTTTATGAAT+TGG | + | chr5.3:40962182-40962201 | MS.gene053960:intron | 25.0% |
| !!! | AAATCAGCCTTTACTTTTAA+AGG | - | chr5.3:40964167-40964186 | None:intergenic | 25.0% |
| !!! | AACAAATCTCTAAAGTAGAA+AGG | + | chr5.3:40960849-40960868 | MS.gene053960:intron | 25.0% |
| !!! | AATATTTTTGACAGCATTCA+TGG | - | chr5.3:40964071-40964090 | None:intergenic | 25.0% |
| !!! | ATACAAAATATTTTTGGGTC+GGG | + | chr5.3:40960273-40960292 | MS.gene053960:CDS | 25.0% |
| !!! | GATACAAAATATTTTTGGGT+CGG | + | chr5.3:40960272-40960291 | MS.gene053960:CDS | 25.0% |
| !!! | GTTTTTTGACAAAGTTACAA+AGG | - | chr5.3:40961401-40961420 | None:intergenic | 25.0% |
| !!! | TATAAGAACTTTTTTGTCAG+TGG | - | chr5.3:40963568-40963587 | None:intergenic | 25.0% |
| AAAAAGAAGGGTTACAAGAT+TGG | + | chr5.3:40960772-40960791 | MS.gene053960:intron | 30.0% | |
| AAAAGAAGGGTTACAAGATT+GGG | + | chr5.3:40960773-40960792 | MS.gene053960:intron | 30.0% | |
| AAACTGAAAATTCTCTCAAC+TGG | - | chr5.3:40961360-40961379 | None:intergenic | 30.0% | |
| AACCAAGTAAAGTTTGTCTT+TGG | - | chr5.3:40964252-40964271 | None:intergenic | 30.0% | |
| AATCAAGCTATTGAAGGAAT+TGG | - | chr5.3:40961904-40961923 | None:intergenic | 30.0% | |
| AATTCCTTCAATAGCTTGAT+TGG | + | chr5.3:40961903-40961922 | MS.gene053960:intron | 30.0% | |
| AGACAAACTTTACTTGGTTT+AGG | + | chr5.3:40964253-40964272 | MS.gene053960:intron | 30.0% | |
| AGTTAGAAGCTAATCTAAAC+TGG | - | chr5.3:40963505-40963524 | None:intergenic | 30.0% | |
| ATCATTATATCCTGTAGGAT+AGG | + | chr5.3:40963877-40963896 | MS.gene053960:intron | 30.0% | |
| ATGATACGAGAAAGAAGATT+AGG | + | chr5.3:40960159-40960178 | MS.gene053960:CDS | 30.0% | |
| ATTATACATTAGATGGCAGA+TGG | - | chr5.3:40961459-40961478 | None:intergenic | 30.0% | |
| ATTATTTGTTCAATGCACTC+AGG | + | chr5.3:40962654-40962673 | MS.gene053960:intron | 30.0% | |
| ATTTCGGAATGAAATGTCAT+CGG | + | chr5.3:40962527-40962546 | MS.gene053960:intron | 30.0% | |
| CAAGCACTTAATTGGTAAAA+TGG | - | chr5.3:40963349-40963368 | None:intergenic | 30.0% | |
| CAATTGGATTATTGTTCCTT+AGG | + | chr5.3:40961670-40961689 | MS.gene053960:intron | 30.0% | |
| CCAGAATATTAAAGCAAGTA+TGG | - | chr5.3:40960529-40960548 | None:intergenic | 30.0% | |
| CCATACTTGCTTTAATATTC+TGG | + | chr5.3:40960526-40960545 | MS.gene053960:CDS | 30.0% | |
| CCATTCAACAAACAAAGTTT+AGG | + | chr5.3:40962468-40962487 | MS.gene053960:intron | 30.0% | |
| CGGTAAAATAATTCCAACAT+AGG | + | chr5.3:40961730-40961749 | MS.gene053960:intron | 30.0% | |
| GACAAACTTTACTTGGTTTA+GGG | + | chr5.3:40964254-40964273 | MS.gene053960:intron | 30.0% | |
| GAGAACTCTTTGTTAAGAAT+GGG | + | chr5.3:40964012-40964031 | MS.gene053960:intron | 30.0% | |
| GGAACACCTAGATATATAAA+AGG | + | chr5.3:40962094-40962113 | MS.gene053960:intron | 30.0% | |
| GTTAGAAGCTAATCTAAACT+GGG | - | chr5.3:40963504-40963523 | None:intergenic | 30.0% | |
| TAAAGTTGAAACTTGCAACT+TGG | - | chr5.3:40962031-40962050 | None:intergenic | 30.0% | |
| TAACTAATCATGGATACGTT+AGG | + | chr5.3:40963145-40963164 | MS.gene053960:intron | 30.0% | |
| TAATAATAACTGACTGCTAC+TGG | - | chr5.3:40963945-40963964 | None:intergenic | 30.0% | |
| TGAATCACAGAATAAACTTC+AGG | - | chr5.3:40964324-40964343 | None:intergenic | 30.0% | |
| TGATATCCAAGTCTGATATT+AGG | + | chr5.3:40964190-40964209 | MS.gene053960:intron | 30.0% | |
| TGGAAATCATTATATCCTGT+AGG | + | chr5.3:40963872-40963891 | MS.gene053960:intron | 30.0% | |
| TGGCAATTTGACTACTAAAT+TGG | - | chr5.3:40961331-40961350 | None:intergenic | 30.0% | |
| TGTAAGAACAAAGTGGAAAT+TGG | + | chr5.3:40962276-40962295 | MS.gene053960:intron | 30.0% | |
| TTCCACTTTGTTCTTACAAA+GGG | - | chr5.3:40962274-40962293 | None:intergenic | 30.0% | |
| TTCCCTTTAGATGATAAAGA+AGG | + | chr5.3:40963069-40963088 | MS.gene053960:intron | 30.0% | |
| TTCTTAATGCCTTTACCTAA+AGG | + | chr5.3:40960645-40960664 | MS.gene053960:intron | 30.0% | |
| TTGAAGCAGCAAAATATGAA+TGG | - | chr5.3:40963757-40963776 | None:intergenic | 30.0% | |
| TTTCCACTTTGTTCTTACAA+AGG | - | chr5.3:40962275-40962294 | None:intergenic | 30.0% | |
| TTTGTTTCAGAGAAATTTGG+AGG | - | chr5.3:40962567-40962586 | None:intergenic | 30.0% | |
| ! | ATTTTACCGACAAAGATCAA+TGG | - | chr5.3:40961719-40961738 | None:intergenic | 30.0% |
| ! | CATCATGTTTTCTTTCCATT+TGG | - | chr5.3:40961648-40961667 | None:intergenic | 30.0% |
| ! | CATTTTACCAATTAAGTGCT+TGG | + | chr5.3:40963347-40963366 | MS.gene053960:intron | 30.0% |
| ! | CCTAAACTTTGTTTGTTGAA+TGG | - | chr5.3:40962471-40962490 | None:intergenic | 30.0% |
| ! | GTTTTCAAACCACTTAATGA+AGG | - | chr5.3:40961807-40961826 | None:intergenic | 30.0% |
| ! | TGATTTTCCAAGCACTTAAT+TGG | - | chr5.3:40963357-40963376 | None:intergenic | 30.0% |
| ! | TGTTAGGTTTGCCTAATTTT+AGG | - | chr5.3:40960833-40960852 | None:intergenic | 30.0% |
| ! | TTATCCTTTTTGTCTTGTCT+TGG | + | chr5.3:40962789-40962808 | MS.gene053960:CDS | 30.0% |
| ! | TTTCTGGCCTTTAAAAGTAA+AGG | + | chr5.3:40964157-40964176 | MS.gene053960:intron | 30.0% |
| ! | TTTTACCGACAAAGATCAAT+GGG | - | chr5.3:40961718-40961737 | None:intergenic | 30.0% |
| !! | ATTCAAGAATCTTTGAGACA+TGG | - | chr5.3:40962135-40962154 | None:intergenic | 30.0% |
| !! | GAAGTGCGTTTATTTTCTAT+CGG | + | chr5.3:40960202-40960221 | MS.gene053960:CDS | 30.0% |
| AAAGGCCAATACAACATTCT+GGG | + | chr5.3:40961163-40961182 | MS.gene053960:intron | 35.0% | |
| AACCAACTTAAGTGTCCTTT+AGG | - | chr5.3:40960663-40960682 | None:intergenic | 35.0% | |
| AACCATATGGACATTGCTAA+AGG | + | chr5.3:40961145-40961164 | MS.gene053960:intron | 35.0% | |
| AAGAGTAGGTAATGTCCATA+TGG | - | chr5.3:40961048-40961067 | None:intergenic | 35.0% | |
| ACAAAATTTCTACTGTGGCT+TGG | - | chr5.3:40961836-40961855 | None:intergenic | 35.0% | |
| ACCTAGATATATAAAAGGGG+TGG | + | chr5.3:40962099-40962118 | MS.gene053960:intron | 35.0% | |
| AGCCAAAGACAAACTTTACT+TGG | + | chr5.3:40964247-40964266 | MS.gene053960:intron | 35.0% | |
| AGGATAGGATGAGATTATGA+TGG | + | chr5.3:40963892-40963911 | MS.gene053960:intron | 35.0% | |
| AGGTTGACAATTAAAGTCAC+TGG | - | chr5.3:40960417-40960436 | None:intergenic | 35.0% | |
| AGTGATAACTGATAACTAGC+AGG | - | chr5.3:40961961-40961980 | None:intergenic | 35.0% | |
| ATAATCTCATCCTATCCTAC+AGG | - | chr5.3:40963890-40963909 | None:intergenic | 35.0% | |
| ATGCTTAATTCCATGCCAAA+TGG | + | chr5.3:40961630-40961649 | MS.gene053960:intron | 35.0% | |
| ATTCTAGCATCACTTTCAAC+TGG | - | chr5.3:40961290-40961309 | None:intergenic | 35.0% | |
| ATTCTCTCAACTGGAATAGA+TGG | - | chr5.3:40961351-40961370 | None:intergenic | 35.0% | |
| CACCAACAAAATTTCTACTG+TGG | - | chr5.3:40961841-40961860 | None:intergenic | 35.0% | |
| CACGTAGACAAAATATCAAC+AGG | - | chr5.3:40963123-40963142 | None:intergenic | 35.0% | |
| CATCATTTACTACCCATTCT+GGG | + | chr5.3:40962823-40962842 | MS.gene053960:CDS | 35.0% | |
| CCAGAAATAACATGTCAAGA+AGG | - | chr5.3:40964144-40964163 | None:intergenic | 35.0% | |
| CGCTTCTTCAGAATATGAAT+AGG | - | chr5.3:40962956-40962975 | None:intergenic | 35.0% | |
| CTTAAGCAGAAAAAGTTTGG+TGG | + | chr5.3:40963442-40963461 | MS.gene053960:intron | 35.0% | |
| CTTAAGTGTCCTTTAGGTAA+AGG | - | chr5.3:40960657-40960676 | None:intergenic | 35.0% | |
| GAAATGTATCCAAGCTAACT+AGG | + | chr5.3:40963727-40963746 | MS.gene053960:intron | 35.0% | |
| GAATTTCAACAGGTGACAAA+AGG | - | chr5.3:40962903-40962922 | None:intergenic | 35.0% | |
| GCTATGAAAAGAGACTCATA+AGG | + | chr5.3:40962222-40962241 | MS.gene053960:intron | 35.0% | |
| GGAAATTTAAGGAATCAGCA+TGG | + | chr5.3:40960180-40960199 | MS.gene053960:CDS | 35.0% | |
| GGAGAACTCTTTGTTAAGAA+TGG | + | chr5.3:40964011-40964030 | MS.gene053960:intron | 35.0% | |
| GGATAGGATGAGATTATGAT+GGG | + | chr5.3:40963893-40963912 | MS.gene053960:intron | 35.0% | |
| GTCAGCTATAACTATCAATG+AGG | - | chr5.3:40961769-40961788 | None:intergenic | 35.0% | |
| TAAAGGCCAATACAACATTC+TGG | + | chr5.3:40961162-40961181 | MS.gene053960:intron | 35.0% | |
| TACCTAAAGGACACTTAAGT+TGG | + | chr5.3:40960658-40960677 | MS.gene053960:intron | 35.0% | |
| TAGAAAGGTCTAGTGAAACT+AGG | + | chr5.3:40960864-40960883 | MS.gene053960:intron | 35.0% | |
| TCCACTTTGTTCTTACAAAG+GGG | - | chr5.3:40962273-40962292 | None:intergenic | 35.0% | |
| TCTACGTGCTTAACTAATCA+TGG | + | chr5.3:40963135-40963154 | MS.gene053960:intron | 35.0% | |
| TCTCCACAAAACAAAAGTTC+TGG | + | chr5.3:40961230-40961249 | MS.gene053960:intron | 35.0% | |
| TGATTCCCAGAATGTTGTAT+TGG | - | chr5.3:40961171-40961190 | None:intergenic | 35.0% | |
| TGGAAACCTAATATCAGACT+TGG | - | chr5.3:40964199-40964218 | None:intergenic | 35.0% | |
| TGGCCAAGTATAAATTCTGA+AGG | + | chr5.3:40961923-40961942 | MS.gene053960:intron | 35.0% | |
| TTCAAAGGGAAACCTATCTT+TGG | - | chr5.3:40962070-40962089 | None:intergenic | 35.0% | |
| TTCACAGCTTTCATGGAAAT+TGG | + | chr5.3:40962351-40962370 | MS.gene053960:intron | 35.0% | |
| TTCAGCTCATGATGAATTGT+GGG | + | chr5.3:40961493-40961512 | MS.gene053960:intron | 35.0% | |
| TTGAAACTTGCAACTTGGAA+GGG | - | chr5.3:40962026-40962045 | None:intergenic | 35.0% | |
| ! | ACCACCCCTTTTATATATCT+AGG | - | chr5.3:40962103-40962122 | None:intergenic | 35.0% |
| ! | AGCCACAGTAGAAATTTTGT+TGG | + | chr5.3:40961836-40961855 | MS.gene053960:intron | 35.0% |
| ! | ATAGGTTTCCCTTTGAAGAT+GGG | + | chr5.3:40962073-40962092 | MS.gene053960:intron | 35.0% |
| ! | ATCTAGAATAGGCCAAAGAT+AGG | + | chr5.3:40962055-40962074 | MS.gene053960:intron | 35.0% |
| ! | CACAAAACAAAAGTTCTGGT+GGG | + | chr5.3:40961234-40961253 | MS.gene053960:intron | 35.0% |
| ! | CTGCATTGTAAGTCTGAAAT+TGG | + | chr5.3:40963990-40964009 | MS.gene053960:intron | 35.0% |
| ! | GTTCTGAACTGATAAGTGAA+TGG | - | chr5.3:40961551-40961570 | None:intergenic | 35.0% |
| ! | TGAGTCTCTTTTCATAGCTA+TGG | - | chr5.3:40962220-40962239 | None:intergenic | 35.0% |
| ! | TGTTTTCTTTCCATTTGGCA+TGG | - | chr5.3:40961643-40961662 | None:intergenic | 35.0% |
| ! | TTTTCGAAAAATCAACCGTC+TGG | - | chr5.3:40960111-40960130 | None:intergenic | 35.0% |
| !! | AAAGTGGAAATTGGCTTTCA+TGG | + | chr5.3:40962285-40962304 | MS.gene053960:intron | 35.0% |
| !! | AGACGGTTGATTTTTCGAAA+AGG | + | chr5.3:40960110-40960129 | MS.gene053960:CDS | 35.0% |
| !! | CCTTCTTGACATGTTATTTC+TGG | + | chr5.3:40964141-40964160 | MS.gene053960:intron | 35.0% |
| !! | GACGGTTGATTTTTCGAAAA+GGG | + | chr5.3:40960111-40960130 | MS.gene053960:CDS | 35.0% |
| !! | TGTGGAGATTTTTCTAGCAA+GGG | - | chr5.3:40961218-40961237 | None:intergenic | 35.0% |
| !! | TTGTGGAGATTTTTCTAGCA+AGG | - | chr5.3:40961219-40961238 | None:intergenic | 35.0% |
| !!! | TCTTCTTTTTTGCAGCTATG+AGG | + | chr5.3:40964409-40964428 | MS.gene053960:intron | 35.0% |
| !!! | TTGGTTTTGTGAGCACATTA+TGG | + | chr5.3:40960677-40960696 | MS.gene053960:intron | 35.0% |
| AAACGTCTTCACAGCTTTCA+TGG | + | chr5.3:40962344-40962363 | MS.gene053960:intron | 40.0% | |
| AAACTGAGAGGTCAGGATTA+AGG | + | chr5.3:40963775-40963794 | MS.gene053960:intron | 40.0% | |
| AAGTGCCCATTGATCTTTGT+CGG | + | chr5.3:40961710-40961729 | MS.gene053960:intron | 40.0% | |
| AATGGATGACCTAGTTAGCT+TGG | - | chr5.3:40963739-40963758 | None:intergenic | 40.0% | |
| ACAATCTCTCTGATGAGCTA+TGG | - | chr5.3:40960902-40960921 | None:intergenic | 40.0% | |
| AGAGACAACATGATGTGTCA+TGG | - | chr5.3:40960580-40960599 | None:intergenic | 40.0% | |
| ATAGCTCATCAGAGAGATTG+TGG | + | chr5.3:40960901-40960920 | MS.gene053960:intron | 40.0% | |
| ATGAAGGGAGCTTAGCTATA+AGG | - | chr5.3:40961791-40961810 | None:intergenic | 40.0% | |
| ATTTCCTTCACCTATGTTCC+AGG | + | chr5.3:40961579-40961598 | MS.gene053960:intron | 40.0% | |
| CAATCTATGCTAATGCTACC+TGG | - | chr5.3:40961600-40961619 | None:intergenic | 40.0% | |
| CAGATGCTTGTCCAATTTCA+AGG | - | chr5.3:40964444-40964463 | None:intergenic | 40.0% | |
| CATAGCTATGGTGAGTATTC+TGG | - | chr5.3:40962208-40962227 | None:intergenic | 40.0% | |
| CCACTTTGTTCTTACAAAGG+GGG | - | chr5.3:40962272-40962291 | None:intergenic | 40.0% | |
| CCTGTCCATTATAGTCAGAA+GGG | + | chr5.3:40961998-40962017 | MS.gene053960:intron | 40.0% | |
| CTGCAACATATGATGAACCT+TGG | + | chr5.3:40960243-40960262 | MS.gene053960:CDS | 40.0% | |
| CTTGAAAGATTATTTGGCCG+TGG | - | chr5.3:40962411-40962430 | None:intergenic | 40.0% | |
| CTTGAAATTGGACAAGCATC+TGG | + | chr5.3:40964442-40964461 | MS.gene053960:CDS | 40.0% | |
| GAGGACATTGTGTGTATGTT+TGG | + | chr5.3:40963852-40963871 | MS.gene053960:intron | 40.0% | |
| GCATCATTTACTACCCATTC+TGG | + | chr5.3:40962822-40962841 | MS.gene053960:CDS | 40.0% | |
| GGCAAAATGTCCATATACAG+CGG | + | chr5.3:40962740-40962759 | MS.gene053960:CDS | 40.0% | |
| GGTGATTGACACCTTGAAAT+TGG | + | chr5.3:40964430-40964449 | MS.gene053960:CDS | 40.0% | |
| GTAATGTCCATATGGTTCCT+TGG | - | chr5.3:40961040-40961059 | None:intergenic | 40.0% | |
| GTAGTAAATGATGCGCAGTA+TGG | - | chr5.3:40962816-40962835 | None:intergenic | 40.0% | |
| GTTCAGCTCATGATGAATTG+TGG | + | chr5.3:40961492-40961511 | MS.gene053960:intron | 40.0% | |
| GTTGAAACTTGCAACTTGGA+AGG | - | chr5.3:40962027-40962046 | None:intergenic | 40.0% | |
| TAACTGCATTGTTGATGCCT+TGG | - | chr5.3:40960937-40960956 | None:intergenic | 40.0% | |
| TACTTCGAAGAACCCAGAAT+GGG | - | chr5.3:40962838-40962857 | None:intergenic | 40.0% | |
| TAGGTGTTCCCATCTTCAAA+GGG | - | chr5.3:40962084-40962103 | None:intergenic | 40.0% | |
| TATGCAGAGCTAGATTCCTA+AGG | - | chr5.3:40961689-40961708 | None:intergenic | 40.0% | |
| TCAACTGGTGCAAACTGATA+TGG | - | chr5.3:40961275-40961294 | None:intergenic | 40.0% | |
| TGAAACTTGCAACTTGGAAG+GGG | - | chr5.3:40962025-40962044 | None:intergenic | 40.0% | |
| TGGTCCAAGACAAGACAAAA+AGG | - | chr5.3:40962796-40962815 | None:intergenic | 40.0% | |
| TTGAAGGGGCTGTATATGTA+TGG | + | chr5.3:40960483-40960502 | MS.gene053960:CDS | 40.0% | |
| TTGGCCAATCAAGCTATTGA+AGG | - | chr5.3:40961910-40961929 | None:intergenic | 40.0% | |
| TTGGTCAAATCTGCGCAAAA+GGG | + | chr5.3:40964561-40964580 | MS.gene053960:CDS | 40.0% | |
| TTGTTCTTACAAAGGGGGTT+CGG | - | chr5.3:40962267-40962286 | None:intergenic | 40.0% | |
| ! | AAAACAAAAGTTCTGGTGGG+CGG | + | chr5.3:40961237-40961256 | MS.gene053960:intron | 40.0% |
| ! | AAATTTCTACTGTGGCTTGG+AGG | - | chr5.3:40961833-40961852 | None:intergenic | 40.0% |
| ! | ATTCTGAAGAAGCGACCATT+GGG | + | chr5.3:40962962-40962981 | MS.gene053960:intron | 40.0% |
| ! | CCACAAAACAAAAGTTCTGG+TGG | + | chr5.3:40961233-40961252 | MS.gene053960:intron | 40.0% |
| ! | GATAGGTTTCCCTTTGAAGA+TGG | + | chr5.3:40962072-40962091 | MS.gene053960:intron | 40.0% |
| ! | TATTCTGAAGAAGCGACCAT+TGG | + | chr5.3:40962961-40962980 | MS.gene053960:intron | 40.0% |
| !! | ACTGATGTGTTTCTGGAGAT+AGG | + | chr5.3:40962719-40962738 | MS.gene053960:CDS | 40.0% |
| !! | AGAAGAGTACTTATCCCCAA+TGG | - | chr5.3:40962980-40962999 | None:intergenic | 40.0% |
| !! | ATCTTTGAGACATGGCACAT+TGG | - | chr5.3:40962127-40962146 | None:intergenic | 40.0% |
| !! | ATGGAAATTGGCTTTCAGTG+TGG | + | chr5.3:40962363-40962382 | MS.gene053960:intron | 40.0% |
| !! | CCTTCTGACTATAATGGACA+GGG | - | chr5.3:40962000-40962019 | None:intergenic | 40.0% |
| !! | TTTTGCTGCTTCAAACTGAG+AGG | + | chr5.3:40963763-40963782 | MS.gene053960:intron | 40.0% |
| !!! | ACAGCTCTAGCGTTACTTTT+GGG | - | chr5.3:40964348-40964367 | None:intergenic | 40.0% |
| !!! | CCACCAGAACTTTTGTTTTG+TGG | - | chr5.3:40961236-40961255 | None:intergenic | 40.0% |
| AGAAGGGTTACAAGATTGGG+AGG | + | chr5.3:40960776-40960795 | MS.gene053960:intron | 45.0% | |
| ATATGGTTCCTTGGACCACA+AGG | - | chr5.3:40961031-40961050 | None:intergenic | 45.0% | |
| ATCTCTCTGATGAGCTATGG+TGG | - | chr5.3:40960899-40960918 | None:intergenic | 45.0% | |
| CATTTGGCAGTTAGGCTAAG+AGG | + | chr5.3:40963833-40963852 | MS.gene053960:intron | 45.0% | |
| CCCCCTTTGTAAGAACAAAG+TGG | + | chr5.3:40962269-40962288 | MS.gene053960:intron | 45.0% | |
| CCCTGTCCATTATAGTCAGA+AGG | + | chr5.3:40961997-40962016 | MS.gene053960:intron | 45.0% | |
| CTAGGTGTTCCCATCTTCAA+AGG | - | chr5.3:40962085-40962104 | None:intergenic | 45.0% | |
| CTGCTATGTTGCACCTATGT+TGG | - | chr5.3:40961746-40961765 | None:intergenic | 45.0% | |
| GAAATTGGACAAGCATCTGG+TGG | + | chr5.3:40964445-40964464 | MS.gene053960:CDS | 45.0% | |
| GCAAGGGCTGGAATAACTTA+TGG | - | chr5.3:40961202-40961221 | None:intergenic | 45.0% | |
| GCAATGTCCATATGGTTCCT+TGG | - | chr5.3:40961142-40961161 | None:intergenic | 45.0% | |
| GCTAAGCTCCCTTCATTAAG+TGG | + | chr5.3:40961795-40961814 | MS.gene053960:intron | 45.0% | |
| GCTAATGCTACCTGGAACAT+AGG | - | chr5.3:40961592-40961611 | None:intergenic | 45.0% | |
| GGCCTTTAGCAATGTCCATA+TGG | - | chr5.3:40961150-40961169 | None:intergenic | 45.0% | |
| GTACTTCGAAGAACCCAGAA+TGG | - | chr5.3:40962839-40962858 | None:intergenic | 45.0% | |
| GTTGGTCAAATCTGCGCAAA+AGG | + | chr5.3:40964560-40964579 | MS.gene053960:CDS | 45.0% | |
| TCGGTAAGTGCAAATGTGGA+AGG | - | chr5.3:40962248-40962267 | None:intergenic | 45.0% | |
| TCTGGGTTCTTCGAAGTACA+AGG | + | chr5.3:40962840-40962859 | MS.gene053960:CDS | 45.0% | |
| TGATTCTGCACCGCTGTATA+TGG | - | chr5.3:40962753-40962772 | None:intergenic | 45.0% | |
| TTGTGGTCCAAGGAACCATA+TGG | + | chr5.3:40961030-40961049 | MS.gene053960:intron | 45.0% | |
| ! | AGTTTAGGGCTTGATCAGAG+AGG | + | chr5.3:40962483-40962502 | MS.gene053960:intron | 45.0% |
| ! | GCACTCAGGTTTGTTCGAAT+TGG | + | chr5.3:40962668-40962687 | MS.gene053960:intron | 45.0% |
| ! | TATTTGGCCGTGGAAGCTTT+TGG | - | chr5.3:40962401-40962420 | None:intergenic | 45.0% |
| ! | TTCTGAAGAAGCGACCATTG+GGG | + | chr5.3:40962963-40962982 | MS.gene053960:intron | 45.0% |
| ! | TTGGCTTTCAGTGTGGATTC+CGG | + | chr5.3:40962370-40962389 | MS.gene053960:intron | 45.0% |
| !! | CCCTTCTGACTATAATGGAC+AGG | - | chr5.3:40962001-40962020 | None:intergenic | 45.0% |
| !! | GACAGCTCTAGCGTTACTTT+TGG | - | chr5.3:40964349-40964368 | None:intergenic | 45.0% |
| !! | GAGATTTTTCTAGCAAGGGC+TGG | - | chr5.3:40961214-40961233 | None:intergenic | 45.0% |
| !! | GTGGAAATTGGCTTTCATGG+AGG | + | chr5.3:40962288-40962307 | MS.gene053960:intron | 45.0% |
| !! | TATAATGGACAGGGTACAGC+TGG | - | chr5.3:40961991-40962010 | None:intergenic | 45.0% |
| !!! | AAATATTTTTGGGTCGGGCC+AGG | + | chr5.3:40960278-40960297 | MS.gene053960:CDS | 45.0% |
| !!! | AATATTTTTGGGTCGGGCCA+GGG | + | chr5.3:40960279-40960298 | MS.gene053960:CDS | 45.0% |
| ACACATCAGTAGCGTCGTGA+AGG | - | chr5.3:40962709-40962728 | None:intergenic | 50.0% | |
| ATTGTGGCCATGCTTAGCCA+AGG | + | chr5.3:40960917-40960936 | MS.gene053960:intron | 50.0% | |
| CACATCAGTAGCGTCGTGAA+GGG | - | chr5.3:40962708-40962727 | None:intergenic | 50.0% | |
| CCAACAGAACGCAGCGATTT+CGG | + | chr5.3:40962511-40962530 | MS.gene053960:intron | 50.0% | |
| CCATCTCCATGCAATTGCTC+CGG | + | chr5.3:40961000-40961019 | MS.gene053960:intron | 50.0% | |
| CGACGCTACTGATGTGTTTC+TGG | + | chr5.3:40962712-40962731 | MS.gene053960:CDS | 50.0% | |
| CTGATGCTTCGGATGCTTGT+TGG | + | chr5.3:40964542-40964561 | MS.gene053960:CDS | 50.0% | |
| CTGCTTCAAACTGAGAGGTC+AGG | + | chr5.3:40963768-40963787 | MS.gene053960:intron | 50.0% | |
| GCTACCTGGAACATAGGTGA+AGG | - | chr5.3:40961586-40961605 | None:intergenic | 50.0% | |
| GGGCTGTATATGTATGGTGC+TGG | + | chr5.3:40960489-40960508 | MS.gene053960:CDS | 50.0% | |
| GGGGTCCCTTCTGACTATAA+TGG | - | chr5.3:40962006-40962025 | None:intergenic | 50.0% | |
| GTTGATGCCTTGGCTAAGCA+TGG | - | chr5.3:40960927-40960946 | None:intergenic | 50.0% | |
| TCTGGCCATATCTGATTCCC+TGG | - | chr5.3:40960299-40960318 | None:intergenic | 50.0% | |
| ! | GGGTTCGGTAAGTGCAAATG+TGG | - | chr5.3:40962252-40962271 | None:intergenic | 50.0% |
| !! | ATTGGTGGGTGCTGATGCTT+CGG | + | chr5.3:40964531-40964550 | MS.gene053960:CDS | 50.0% |
| ATTGCTCCGGCGATTCCTTG+TGG | + | chr5.3:40961013-40961032 | MS.gene053960:intron | 55.0% | |
| CCGAAATCGCTGCGTTCTGT+TGG | - | chr5.3:40962514-40962533 | None:intergenic | 55.0% | |
| CCGGAGCAATTGCATGGAGA+TGG | - | chr5.3:40961003-40961022 | None:intergenic | 55.0% | |
| CTTGGACCACAAGGAATCGC+CGG | - | chr5.3:40961022-40961041 | None:intergenic | 55.0% | |
| GAATCGCCGGAGCAATTGCA+TGG | - | chr5.3:40961009-40961028 | None:intergenic | 55.0% | |
| GCTGTGAAGACGTTTGCGCA+TGG | - | chr5.3:40962339-40962358 | None:intergenic | 55.0% | |
| GCTTTCAGTGTGGATTCCGG+CGG | + | chr5.3:40962373-40962392 | MS.gene053960:intron | 55.0% | |
| TCGGGCCAGGGAATCAGATA+TGG | + | chr5.3:40960291-40960310 | MS.gene053960:CDS | 55.0% | |
| CGGCGATTCCTTGTGGTCCA+AGG | + | chr5.3:40961020-40961039 | MS.gene053960:intron | 60.0% | |
| GGCGGAGCCAAAAGCTTCCA+CGG | + | chr5.3:40962391-40962410 | MS.gene053960:intron | 60.0% | |
| !!! | GTGGAAGCTTTTGGCTCCGC+CGG | - | chr5.3:40962392-40962411 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 40960101 | 40964608 | 40960101 | ID=MS.gene053960 |
| chr5.3 | mRNA | 40960101 | 40964608 | 40960101 | ID=MS.gene053960.t1;Parent=MS.gene053960 |
| chr5.3 | exon | 40960101 | 40960330 | 40960101 | ID=MS.gene053960.t1.exon1;Parent=MS.gene053960.t1 |
| chr5.3 | CDS | 40960101 | 40960330 | 40960101 | ID=cds.MS.gene053960.t1;Parent=MS.gene053960.t1 |
| chr5.3 | exon | 40960476 | 40960631 | 40960476 | ID=MS.gene053960.t1.exon2;Parent=MS.gene053960.t1 |
| chr5.3 | CDS | 40960476 | 40960631 | 40960476 | ID=cds.MS.gene053960.t1;Parent=MS.gene053960.t1 |
| chr5.3 | exon | 40962676 | 40962861 | 40962676 | ID=MS.gene053960.t1.exon3;Parent=MS.gene053960.t1 |
| chr5.3 | CDS | 40962676 | 40962861 | 40962676 | ID=cds.MS.gene053960.t1;Parent=MS.gene053960.t1 |
| chr5.3 | exon | 40964424 | 40964608 | 40964424 | ID=MS.gene053960.t1.exon4;Parent=MS.gene053960.t1 |
| chr5.3 | CDS | 40964424 | 40964608 | 40964424 | ID=cds.MS.gene053960.t1;Parent=MS.gene053960.t1 |
| Gene Sequence |
| Protein sequence |
