Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72149.t1 | XP_003630518.1 | 93.3 | 179 | 5 | 1 | 1 | 179 | 1 | 172 | 2.10E-90 | 341.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72149.t1 | Q8LBU2 | 75.4 | 171 | 35 | 1 | 8 | 178 | 3 | 166 | 4.5e-73 | 275.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72149.t1 | G7LHZ7 | 93.3 | 179 | 5 | 1 | 1 | 179 | 1 | 172 | 1.5e-90 | 341.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049567 | MS.gene72149 | 0.803296 | 3.73E-49 | -1.69E-46 |
| MS.gene050438 | MS.gene72149 | 0.800546 | 1.37E-48 | -1.69E-46 |
| MS.gene050719 | MS.gene72149 | 0.84992 | 2.37E-60 | -1.69E-46 |
| MS.gene050721 | MS.gene72149 | 0.853667 | 2.05E-61 | -1.69E-46 |
| MS.gene050724 | MS.gene72149 | 0.83276 | 7.86E-56 | -1.69E-46 |
| MS.gene050780 | MS.gene72149 | 0.87548 | 2.98E-68 | -1.69E-46 |
| MS.gene050815 | MS.gene72149 | 0.807886 | 4.06E-50 | -1.69E-46 |
| MS.gene050844 | MS.gene72149 | 0.822172 | 2.73E-53 | -1.69E-46 |
| MS.gene051207 | MS.gene72149 | 0.806993 | 6.28E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene72149 | 0.826242 | 3.02E-54 | -1.69E-46 |
| MS.gene051744 | MS.gene72149 | 0.855861 | 4.75E-62 | -1.69E-46 |
| MS.gene051757 | MS.gene72149 | 0.81233 | 4.48E-51 | -1.69E-46 |
| MS.gene051975 | MS.gene72149 | 0.802637 | 5.10E-49 | -1.69E-46 |
| MS.gene052020 | MS.gene72149 | 0.80405 | 2.60E-49 | -1.69E-46 |
| MS.gene052208 | MS.gene72149 | 0.807764 | 4.31E-50 | -1.69E-46 |
| MS.gene052286 | MS.gene72149 | 0.841207 | 5.46E-58 | -1.69E-46 |
| MS.gene052773 | MS.gene72149 | 0.800349 | 1.50E-48 | -1.69E-46 |
| MS.gene052863 | MS.gene72149 | 0.807112 | 5.93E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene72149 | 0.818206 | 2.21E-52 | -1.69E-46 |
| MS.gene053006 | MS.gene72149 | 0.815747 | 7.89E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene72149 | 0.813705 | 2.24E-51 | -1.69E-46 |
| MS.gene053960 | MS.gene72149 | 0.806 | 1.02E-49 | -1.69E-46 |
| MS.gene053962 | MS.gene72149 | 0.814608 | 1.41E-51 | -1.69E-46 |
| MS.gene05414 | MS.gene72149 | 0.810838 | 9.45E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene72149 | 0.815084 | 1.11E-51 | -1.69E-46 |
| MS.gene05468 | MS.gene72149 | 0.802527 | 5.38E-49 | -1.69E-46 |
| MS.gene055512 | MS.gene72149 | 0.806421 | 8.30E-50 | -1.69E-46 |
| MS.gene055778 | MS.gene72149 | 0.81712 | 3.89E-52 | -1.69E-46 |
| MS.gene055818 | MS.gene72149 | 0.831742 | 1.40E-55 | -1.69E-46 |
| MS.gene056069 | MS.gene72149 | -0.807059 | 6.08E-50 | -1.69E-46 |
| MS.gene056631 | MS.gene72149 | 0.815065 | 1.12E-51 | -1.69E-46 |
| MS.gene056760 | MS.gene72149 | 0.833992 | 3.88E-56 | -1.69E-46 |
| MS.gene057026 | MS.gene72149 | 0.806738 | 7.11E-50 | -1.69E-46 |
| MS.gene057693 | MS.gene72149 | 0.825734 | 3.99E-54 | -1.69E-46 |
| MS.gene057915 | MS.gene72149 | 0.816869 | 4.43E-52 | -1.69E-46 |
| MS.gene05795 | MS.gene72149 | 0.81403 | 1.90E-51 | -1.69E-46 |
| MS.gene058636 | MS.gene72149 | 0.805748 | 1.15E-49 | -1.69E-46 |
| MS.gene058906 | MS.gene72149 | 0.832175 | 1.10E-55 | -1.69E-46 |
| MS.gene058979 | MS.gene72149 | 0.810361 | 1.20E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene72149 | 0.815981 | 7.00E-52 | -1.69E-46 |
| MS.gene060572 | MS.gene72149 | 0.807612 | 4.64E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene72149 | 0.804155 | 2.47E-49 | -1.69E-46 |
| MS.gene060998 | MS.gene72149 | 0.806421 | 8.30E-50 | -1.69E-46 |
| MS.gene061040 | MS.gene72149 | -0.80175 | 7.77E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72149.t1 | MTR_8g098400 | 93.296 | 179 | 5 | 1 | 1 | 179 | 1 | 172 | 6.60e-119 | 333 |
| MS.gene72149.t1 | MTR_8g098400 | 92.899 | 169 | 5 | 1 | 1 | 169 | 1 | 162 | 8.26e-111 | 313 |
| MS.gene72149.t1 | MTR_8g098400 | 97.600 | 125 | 3 | 0 | 55 | 179 | 1 | 125 | 3.74e-87 | 251 |
| MS.gene72149.t1 | MTR_8g098410 | 66.082 | 171 | 51 | 1 | 6 | 176 | 68 | 231 | 3.80e-84 | 248 |
| MS.gene72149.t1 | MTR_8g098410 | 66.082 | 171 | 51 | 1 | 6 | 176 | 2 | 165 | 4.47e-84 | 245 |
| MS.gene72149.t1 | MTR_5g010340 | 68.391 | 174 | 47 | 2 | 5 | 177 | 3 | 169 | 5.26e-81 | 238 |
| MS.gene72149.t1 | MTR_8g105630 | 64.242 | 165 | 52 | 1 | 12 | 176 | 7 | 164 | 5.62e-75 | 222 |
| MS.gene72149.t1 | MTR_1g014210 | 61.677 | 167 | 57 | 1 | 12 | 178 | 77 | 236 | 1.54e-72 | 218 |
| MS.gene72149.t1 | MTR_7g094600 | 58.140 | 172 | 65 | 1 | 6 | 177 | 4 | 168 | 2.53e-70 | 211 |
| MS.gene72149.t1 | MTR_8g098400 | 88.596 | 114 | 6 | 1 | 1 | 114 | 1 | 107 | 1.04e-66 | 200 |
| MS.gene72149.t1 | MTR_1g072570 | 54.717 | 159 | 71 | 1 | 21 | 178 | 12 | 170 | 1.12e-61 | 189 |
| MS.gene72149.t1 | MTR_7g094600 | 61.290 | 124 | 48 | 0 | 54 | 177 | 7 | 130 | 2.81e-52 | 163 |
| MS.gene72149.t1 | MTR_8g098410 | 64.220 | 109 | 32 | 1 | 6 | 114 | 68 | 169 | 2.58e-48 | 156 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72149.t1 | AT1G63460 | 75.439 | 171 | 35 | 1 | 8 | 178 | 3 | 166 | 3.45e-94 | 271 |
| MS.gene72149.t1 | AT4G11600 | 70.520 | 173 | 44 | 1 | 6 | 178 | 65 | 230 | 6.20e-89 | 260 |
| MS.gene72149.t1 | AT4G31870 | 64.072 | 167 | 53 | 1 | 12 | 178 | 74 | 233 | 4.31e-74 | 222 |
| MS.gene72149.t1 | AT2G43350 | 61.905 | 168 | 64 | 0 | 10 | 177 | 37 | 204 | 3.85e-73 | 219 |
| MS.gene72149.t1 | AT2G43350 | 61.905 | 168 | 64 | 0 | 10 | 177 | 37 | 204 | 3.85e-73 | 219 |
| MS.gene72149.t1 | AT2G31570 | 62.874 | 167 | 55 | 1 | 11 | 177 | 6 | 165 | 6.85e-72 | 214 |
| MS.gene72149.t1 | AT2G25080 | 60.479 | 167 | 59 | 1 | 12 | 178 | 77 | 236 | 2.03e-70 | 213 |
| MS.gene72149.t1 | AT3G63080 | 57.233 | 159 | 68 | 0 | 21 | 179 | 14 | 172 | 6.82e-67 | 202 |
| MS.gene72149.t1 | AT2G48150 | 53.801 | 171 | 72 | 1 | 6 | 176 | 4 | 167 | 2.46e-63 | 193 |
| MS.gene72149.t1 | AT2G48150 | 58.156 | 141 | 59 | 0 | 36 | 176 | 1 | 141 | 1.37e-58 | 180 |
| MS.gene72149.t1 | AT4G31870 | 58.209 | 67 | 21 | 1 | 12 | 78 | 74 | 133 | 2.47e-18 | 78.2 |
Find 55 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATTAGGCCTTGAGATTC+TGG | 0.187620 | 4.1:+6182747 | MS.gene72149:intron |
| GTGAAGTCGTAGACCGATTT+TGG | 0.224009 | 4.1:-6182040 | None:intergenic |
| AATTCTTAAAGTCAGGTAAA+TGG | 0.245816 | 4.1:+6183493 | MS.gene72149:CDS |
| GCATTTCCAAGTAATCAATT+TGG | 0.254246 | 4.1:+6182769 | MS.gene72149:CDS |
| TCCTCGCCAAATTGATTACT+TGG | 0.314943 | 4.1:-6182775 | None:intergenic |
| AAAATCCAATATTTGATCAT+TGG | 0.340942 | 4.1:-6182809 | None:intergenic |
| ATTCTTAAAGTCAGGTAAAT+GGG | 0.352395 | 4.1:+6183494 | MS.gene72149:CDS |
| TGGAACCAATGATCAAATAT+TGG | 0.356345 | 4.1:+6182804 | MS.gene72149:CDS |
| TTGAATTACCTTATCAAAGA+TGG | 0.358414 | 4.1:-6182860 | None:intergenic |
| AATATTTGATCATTGGTTCC+AGG | 0.413256 | 4.1:-6182802 | None:intergenic |
| CGAGACATCTGTAAACTACT+TGG | 0.422116 | 4.1:+6183738 | MS.gene72149:CDS |
| TTCAATTCTGCAGGATGGTA+AGG | 0.423052 | 4.1:+6182189 | MS.gene72149:intron |
| AGAATTCCCCATCTTTGATA+AGG | 0.431153 | 4.1:+6182852 | MS.gene72149:CDS |
| CAATTTGGCGAGGAAGAACC+TGG | 0.436830 | 4.1:+6182784 | MS.gene72149:CDS |
| TTGTTAATGTTGCTTCCAAA+TGG | 0.457654 | 4.1:+6182257 | MS.gene72149:CDS |
| TTGTATAAATTCTTAAAGTC+AGG | 0.461142 | 4.1:+6183486 | MS.gene72149:CDS |
| TGTTGATCTCGCCACTTACA+AGG | 0.462862 | 4.1:+6182219 | MS.gene72149:CDS |
| TGAATTACCTTATCAAAGAT+GGG | 0.470782 | 4.1:-6182859 | None:intergenic |
| TAACAGTAAGGATCCAAAAT+CGG | 0.474969 | 4.1:+6182027 | MS.gene72149:CDS |
| TTTGGATCCTTACTGTTACT+GGG | 0.498091 | 4.1:-6182022 | None:intergenic |
| TAACTCCACATAATTTGAGT+TGG | 0.517130 | 4.1:-6182573 | None:intergenic |
| ATCCTTGTCAACTAGAAACT+TGG | 0.517555 | 4.1:-6183550 | None:intergenic |
| TGTGCTAGATTGAAGTGAAT+GGG | 0.521263 | 4.1:+6183448 | MS.gene72149:intron |
| GAGACATCTGTAAACTACTT+GGG | 0.521318 | 4.1:+6183739 | MS.gene72149:CDS |
| GAGGACTTTACCCTTGTAAG+TGG | 0.525139 | 4.1:-6182230 | None:intergenic |
| CATGACCAACTCAAATTATG+TGG | 0.528169 | 4.1:+6182568 | MS.gene72149:CDS |
| GAAAGCTCACAGACAGAGAG+AGG | 0.529328 | 4.1:-6182078 | None:intergenic |
| AAGGCTAAGAGGAGAGGTGG+TGG | 0.529913 | 4.1:-6183598 | None:intergenic |
| CCATGTACCTCAAGGCTAAG+AGG | 0.532425 | 4.1:-6183609 | None:intergenic |
| TTGTGCTAGATTGAAGTGAA+TGG | 0.540651 | 4.1:+6183447 | MS.gene72149:intron |
| TCAATTCTGCAGGATGGTAA+GGG | 0.547862 | 4.1:+6182190 | MS.gene72149:intron |
| TGACTTTAAGAATTTATACA+AGG | 0.560826 | 4.1:-6183484 | None:intergenic |
| CAGCGAACCCAGTAACAGTA+AGG | 0.563779 | 4.1:+6182015 | MS.gene72149:CDS |
| TGCCAAGTTTCTAGTTGACA+AGG | 0.569738 | 4.1:+6183548 | MS.gene72149:CDS |
| CACCTCTCCTCTTAGCCTTG+AGG | 0.570064 | 4.1:+6183602 | MS.gene72149:CDS |
| AGGCTAAGAGGAGAGGTGGT+GGG | 0.578274 | 4.1:-6183597 | None:intergenic |
| CTCAAGGCTAAGAGGAGAGG+TGG | 0.599220 | 4.1:-6183601 | None:intergenic |
| AAGTTTCTAGTTGACAAGGA+TGG | 0.601035 | 4.1:+6183552 | MS.gene72149:CDS |
| TTCTTAAAGTCAGGTAAATG+GGG | 0.604283 | 4.1:+6183495 | MS.gene72149:CDS |
| TTGGAAATGCCAGAATCTCA+AGG | 0.604387 | 4.1:-6182756 | None:intergenic |
| GAATTACCTTATCAAAGATG+GGG | 0.609426 | 4.1:-6182858 | None:intergenic |
| TGGAAGCAACATTAACAATG+AGG | 0.614719 | 4.1:-6182252 | None:intergenic |
| GACTTTAAGAATTTATACAA+GGG | 0.617926 | 4.1:-6183483 | None:intergenic |
| AGACATCTGTAAACTACTTG+GGG | 0.623906 | 4.1:+6183740 | MS.gene72149:CDS |
| TACCTCAAGGCTAAGAGGAG+AGG | 0.624418 | 4.1:-6183604 | None:intergenic |
| TGACAAGGATGGTCAAGTGG+TGG | 0.627347 | 4.1:+6183563 | MS.gene72149:CDS |
| AAAGCTCACAGACAGAGAGA+GGG | 0.629693 | 4.1:-6182077 | None:intergenic |
| GTTGATCTCGCCACTTACAA+GGG | 0.632755 | 4.1:+6182220 | MS.gene72149:CDS |
| TCCAAGTAATCAATTTGGCG+AGG | 0.638053 | 4.1:+6182774 | MS.gene72149:CDS |
| CTCACAGACAGAGAGAGGGA+AGG | 0.638465 | 4.1:-6182073 | None:intergenic |
| GGTCTACGACTTCACTCTCA+AGG | 0.640018 | 4.1:+6182048 | MS.gene72149:CDS |
| AGTTGACAAGGATGGTCAAG+TGG | 0.640869 | 4.1:+6183560 | MS.gene72149:CDS |
| TATGACAAGTACAAACACAA+AGG | 0.684030 | 4.1:+6182605 | MS.gene72149:CDS |
| GTGCTAGATTGAAGTGAATG+GGG | 0.691263 | 4.1:+6183449 | MS.gene72149:intron |
| AAGCAACATTAACAATGAGG+AGG | 0.704587 | 4.1:-6182249 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATAAAGATTATAAGATTAA+GGG | + | chr4.1:6183157-6183176 | MS.gene72149:intron | 15.0% |
| !! | AAAATCCAATATTTGATCAT+TGG | - | chr4.1:6182812-6182831 | None:intergenic | 20.0% |
| !! | AAAGAAAGAAACACTAATTT+AGG | - | chr4.1:6182659-6182678 | None:intergenic | 20.0% |
| !! | GGATAAAGATTATAAGATTA+AGG | + | chr4.1:6183156-6183175 | MS.gene72149:intron | 20.0% |
| !! | TATATCAATATCAATTGACA+TGG | + | chr4.1:6183666-6183685 | MS.gene72149:intron | 20.0% |
| !! | TTGTATAAATTCTTAAAGTC+AGG | + | chr4.1:6183486-6183505 | MS.gene72149:CDS | 20.0% |
| !!! | GACTTTAAGAATTTATACAA+GGG | - | chr4.1:6183486-6183505 | None:intergenic | 20.0% |
| !!! | TACATATATATCGCAAATTT+TGG | - | chr4.1:6183068-6183087 | None:intergenic | 20.0% |
| !!! | TGACTTTAAGAATTTATACA+AGG | - | chr4.1:6183487-6183506 | None:intergenic | 20.0% |
| ! | AAAGAAACACTAATTTAGGT+TGG | - | chr4.1:6182655-6182674 | None:intergenic | 25.0% |
| ! | AATTCTTAAAGTCAGGTAAA+TGG | + | chr4.1:6183493-6183512 | MS.gene72149:CDS | 25.0% |
| ! | ATTCTTAAAGTCAGGTAAAT+GGG | + | chr4.1:6183494-6183513 | MS.gene72149:CDS | 25.0% |
| ! | GAAATGAATAAAAGAGAGTA+TGG | - | chr4.1:6182296-6182315 | None:intergenic | 25.0% |
| ! | GCAGAATAACATTAATCTTA+GGG | - | chr4.1:6183353-6183372 | None:intergenic | 25.0% |
| ! | TCAGGTAAACATGTAATATT+TGG | - | chr4.1:6182695-6182714 | None:intergenic | 25.0% |
| ! | TGAAGATCGATAATTACAAT+TGG | - | chr4.1:6183027-6183046 | None:intergenic | 25.0% |
| ! | TGAATTACCTTATCAAAGAT+GGG | - | chr4.1:6182862-6182881 | None:intergenic | 25.0% |
| ! | TGCAGAATAACATTAATCTT+AGG | - | chr4.1:6183354-6183373 | None:intergenic | 25.0% |
| ! | TTGAATTACCTTATCAAAGA+TGG | - | chr4.1:6182863-6182882 | None:intergenic | 25.0% |
| !! | ATTTTTATAAACTATCGAGG+AGG | - | chr4.1:6182438-6182457 | None:intergenic | 25.0% |
| !! | TTTTTATAAACTATCGAGGA+GGG | - | chr4.1:6182437-6182456 | None:intergenic | 25.0% |
| !!! | GCTATTTTTATAAACTATCG+AGG | - | chr4.1:6182441-6182460 | None:intergenic | 25.0% |
| ACACATCAATTGACACAATT+TGG | + | chr4.1:6182326-6182345 | MS.gene72149:intron | 30.0% | |
| CTTGACTATTTGTACTTAGT+TGG | + | chr4.1:6183135-6183154 | MS.gene72149:intron | 30.0% | |
| GAATTACCTTATCAAAGATG+GGG | - | chr4.1:6182861-6182880 | None:intergenic | 30.0% | |
| GCATAAACAAAACAAAACAG+TGG | - | chr4.1:6182114-6182133 | None:intergenic | 30.0% | |
| GCATTTCCAAGTAATCAATT+TGG | + | chr4.1:6182769-6182788 | MS.gene72149:CDS | 30.0% | |
| GCTTAAAGTATAAGTGCTTA+CGG | - | chr4.1:6182485-6182504 | None:intergenic | 30.0% | |
| TAACAGTAAGGATCCAAAAT+CGG | + | chr4.1:6182027-6182046 | MS.gene72149:CDS | 30.0% | |
| TAACTCCACATAATTTGAGT+TGG | - | chr4.1:6182576-6182595 | None:intergenic | 30.0% | |
| TATGACAAGTACAAACACAA+AGG | + | chr4.1:6182605-6182624 | MS.gene72149:CDS | 30.0% | |
| TCAATATCAATTGACATGGA+TGG | + | chr4.1:6183670-6183689 | MS.gene72149:intron | 30.0% | |
| TGCTAAGTAAGCTGTTTATT+TGG | + | chr4.1:6182505-6182524 | MS.gene72149:intron | 30.0% | |
| TGGAACCAATGATCAAATAT+TGG | + | chr4.1:6182804-6182823 | MS.gene72149:CDS | 30.0% | |
| TTCTTAAAGTCAGGTAAATG+GGG | + | chr4.1:6183495-6183514 | MS.gene72149:CDS | 30.0% | |
| TTTCAATTATGTGTTTGCAG+TGG | + | chr4.1:6182948-6182967 | MS.gene72149:intron | 30.0% | |
| ! | AATGCAAAGTTGCTCTTTTT+GGG | - | chr4.1:6183221-6183240 | None:intergenic | 30.0% |
| ! | ACTGAATTGGTAGCTTAATT+AGG | + | chr4.1:6182733-6182752 | MS.gene72149:intron | 30.0% |
| ! | TGAATAAAAGAGAGTATGGT+CGG | - | chr4.1:6182292-6182311 | None:intergenic | 30.0% |
| ! | TTGTTAATGTTGCTTCCAAA+TGG | + | chr4.1:6182257-6182276 | MS.gene72149:CDS | 30.0% |
| !! | AATATTTGATCATTGGTTCC+AGG | - | chr4.1:6182805-6182824 | None:intergenic | 30.0% |
| !! | GTTTTCGATTGATTTCATTG+AGG | + | chr4.1:6182539-6182558 | MS.gene72149:intron | 30.0% |
| !! | TTTGTTTTCTTCAATTCTGC+AGG | + | chr4.1:6182180-6182199 | MS.gene72149:intron | 30.0% |
| AACTTATAAGTTCATCTCCG+TGG | + | chr4.1:6183424-6183443 | MS.gene72149:intron | 35.0% | |
| AAGCAACATTAACAATGAGG+AGG | - | chr4.1:6182252-6182271 | None:intergenic | 35.0% | |
| AGAATTCCCCATCTTTGATA+AGG | + | chr4.1:6182852-6182871 | MS.gene72149:CDS | 35.0% | |
| AGACATCTGTAAACTACTTG+GGG | + | chr4.1:6183740-6183759 | MS.gene72149:CDS | 35.0% | |
| ATCCTTGTCAACTAGAAACT+TGG | - | chr4.1:6183553-6183572 | None:intergenic | 35.0% | |
| ATGAGATGAGATGACTGAAT+TGG | + | chr4.1:6182720-6182739 | MS.gene72149:intron | 35.0% | |
| ATTACAGTTCACATTAGCAG+TGG | - | chr4.1:6183100-6183119 | None:intergenic | 35.0% | |
| CAAAAAGAGCAACTTTGCAT+TGG | + | chr4.1:6183220-6183239 | MS.gene72149:intron | 35.0% | |
| CATGACCAACTCAAATTATG+TGG | + | chr4.1:6182568-6182587 | MS.gene72149:CDS | 35.0% | |
| GAGACATCTGTAAACTACTT+GGG | + | chr4.1:6183739-6183758 | MS.gene72149:CDS | 35.0% | |
| TGGAAGCAACATTAACAATG+AGG | - | chr4.1:6182255-6182274 | None:intergenic | 35.0% | |
| TGTGCTAGATTGAAGTGAAT+GGG | + | chr4.1:6183448-6183467 | MS.gene72149:intron | 35.0% | |
| TGTTGCGTATGTAATTCTTC+TGG | + | chr4.1:6183697-6183716 | MS.gene72149:intron | 35.0% | |
| TTAATTAGGCCTTGAGATTC+TGG | + | chr4.1:6182747-6182766 | MS.gene72149:intron | 35.0% | |
| TTGTGCTAGATTGAAGTGAA+TGG | + | chr4.1:6183447-6183466 | MS.gene72149:intron | 35.0% | |
| TTTGGATCCTTACTGTTACT+GGG | - | chr4.1:6182025-6182044 | None:intergenic | 35.0% | |
| ! | AGGTAAATGGGGAATTTTTG+GGG | + | chr4.1:6183506-6183525 | MS.gene72149:CDS | 35.0% |
| ! | CAATGCAAAGTTGCTCTTTT+TGG | - | chr4.1:6183222-6183241 | None:intergenic | 35.0% |
| ! | CAGGTAAATGGGGAATTTTT+GGG | + | chr4.1:6183505-6183524 | MS.gene72149:CDS | 35.0% |
| ! | TCAGGTAAATGGGGAATTTT+TGG | + | chr4.1:6183504-6183523 | MS.gene72149:CDS | 35.0% |
| ! | TTGACTGCACGACTTTTAAT+AGG | + | chr4.1:6183271-6183290 | MS.gene72149:intron | 35.0% |
| ! | TTTTCTTCAATTCTGCAGGA+TGG | + | chr4.1:6182184-6182203 | MS.gene72149:intron | 35.0% |
| ! | TTTTGGATCCTTACTGTTAC+TGG | - | chr4.1:6182026-6182045 | None:intergenic | 35.0% |
| !! | AAGTTTCTAGTTGACAAGGA+TGG | + | chr4.1:6183552-6183571 | MS.gene72149:CDS | 35.0% |
| !! | TTTTTGGGGATGATATTCAG+TGG | + | chr4.1:6183520-6183539 | MS.gene72149:CDS | 35.0% |
| AACTATCGAGGAGGGATTAT+AGG | - | chr4.1:6182429-6182448 | None:intergenic | 40.0% | |
| ACACTTTGCATTGTTTGCAG+TGG | + | chr4.1:6182979-6182998 | MS.gene72149:intron | 40.0% | |
| ACTTCAATCTAGCACAACCA+CGG | - | chr4.1:6183444-6183463 | None:intergenic | 40.0% | |
| ATAATGCTCCATGTACCTCA+AGG | - | chr4.1:6183620-6183639 | None:intergenic | 40.0% | |
| CATCTCATCTCATGTGTATC+AGG | - | chr4.1:6182713-6182732 | None:intergenic | 40.0% | |
| CGAGACATCTGTAAACTACT+TGG | + | chr4.1:6183738-6183757 | MS.gene72149:CDS | 40.0% | |
| GGTCGGATATACATACCATT+TGG | - | chr4.1:6182275-6182294 | None:intergenic | 40.0% | |
| GTGCTAGATTGAAGTGAATG+GGG | + | chr4.1:6183449-6183468 | MS.gene72149:intron | 40.0% | |
| TCAATTCTGCAGGATGGTAA+GGG | + | chr4.1:6182190-6182209 | MS.gene72149:intron | 40.0% | |
| TCCAAGTAATCAATTTGGCG+AGG | + | chr4.1:6182774-6182793 | MS.gene72149:CDS | 40.0% | |
| TCCTCGCCAAATTGATTACT+TGG | - | chr4.1:6182778-6182797 | None:intergenic | 40.0% | |
| TTCAATTCTGCAGGATGGTA+AGG | + | chr4.1:6182189-6182208 | MS.gene72149:intron | 40.0% | |
| TTCCTTAACATGTGCCCTTA+GGG | - | chr4.1:6183198-6183217 | None:intergenic | 40.0% | |
| TTGGAAATGCCAGAATCTCA+AGG | - | chr4.1:6182759-6182778 | None:intergenic | 40.0% | |
| ! | GATTGATTTCATTGAGGCAG+TGG | + | chr4.1:6182545-6182564 | MS.gene72149:intron | 40.0% |
| !! | AATGTTAACTTGTGCCCTCA+AGG | - | chr4.1:6183329-6183348 | None:intergenic | 40.0% |
| !! | ATGTTAACTTGTGCCCTCAA+GGG | - | chr4.1:6183328-6183347 | None:intergenic | 40.0% |
| !! | CATGTTAACTTGTGCCCTAA+GGG | + | chr4.1:6183181-6183200 | MS.gene72149:intron | 40.0% |
| !! | TCATGTTAACTTGTGCCCTA+AGG | + | chr4.1:6183180-6183199 | MS.gene72149:intron | 40.0% |
| !! | TGCCAAGTTTCTAGTTGACA+AGG | + | chr4.1:6183548-6183567 | MS.gene72149:CDS | 40.0% |
| AAAGCTCACAGACAGAGAGA+GGG | - | chr4.1:6182080-6182099 | None:intergenic | 45.0% | |
| AGTTGACAAGGATGGTCAAG+TGG | + | chr4.1:6183560-6183579 | MS.gene72149:CDS | 45.0% | |
| CGATATCACAAGTGTGCTTC+TGG | - | chr4.1:6182378-6182397 | None:intergenic | 45.0% | |
| GAGGACTTTACCCTTGTAAG+TGG | - | chr4.1:6182233-6182252 | None:intergenic | 45.0% | |
| GTTCCTTAACATGTGCCCTT+AGG | - | chr4.1:6183329-6183310 | None:intergenic | 45.0% | |
| GTTGATCTCGCCACTTACAA+GGG | + | chr4.1:6182220-6182239 | MS.gene72149:CDS | 45.0% | |
| TCCTTAACATGTGCCCTTGA+GGG | + | chr4.1:6183312-6183331 | MS.gene72149:intron | 45.0% | |
| TGTTGATCTCGCCACTTACA+AGG | + | chr4.1:6182219-6182238 | MS.gene72149:CDS | 45.0% | |
| TTCCTTAACATGTGCCCTTG+AGG | + | chr4.1:6183311-6183330 | MS.gene72149:intron | 45.0% | |
| !! | GTGAAGTCGTAGACCGATTT+TGG | - | chr4.1:6182043-6182062 | None:intergenic | 45.0% |
| ACCGAGCAAACATAGTGCAG+AGG | - | chr4.1:6182923-6182942 | None:intergenic | 50.0% | |
| CAATTTGGCGAGGAAGAACC+TGG | + | chr4.1:6182784-6182803 | MS.gene72149:CDS | 50.0% | |
| CAGCGAACCCAGTAACAGTA+AGG | + | chr4.1:6182015-6182034 | MS.gene72149:CDS | 50.0% | |
| CCATGTACCTCAAGGCTAAG+AGG | - | chr4.1:6183612-6183631 | None:intergenic | 50.0% | |
| GAAAGCTCACAGACAGAGAG+AGG | - | chr4.1:6182081-6182100 | None:intergenic | 50.0% | |
| GCCTCTGCACTATGTTTGCT+CGG | + | chr4.1:6182919-6182938 | MS.gene72149:intron | 50.0% | |
| GGTCTACGACTTCACTCTCA+AGG | + | chr4.1:6182048-6182067 | MS.gene72149:CDS | 50.0% | |
| TACCTCAAGGCTAAGAGGAG+AGG | - | chr4.1:6183607-6183626 | None:intergenic | 50.0% | |
| TGACAAGGATGGTCAAGTGG+TGG | + | chr4.1:6183563-6183582 | MS.gene72149:CDS | 50.0% | |
| ! | TGCCCTAAGGGCACATGTTA+AGG | + | chr4.1:6183193-6183212 | MS.gene72149:intron | 50.0% |
| !! | CCTCTTAGCCTTGAGGTACA+TGG | + | chr4.1:6183609-6183628 | MS.gene72149:intron | 50.0% |
| AAGGCTAAGAGGAGAGGTGG+TGG | - | chr4.1:6183601-6183620 | None:intergenic | 55.0% | |
| AGGCTAAGAGGAGAGGTGGT+GGG | - | chr4.1:6183600-6183619 | None:intergenic | 55.0% | |
| CTCAAGGCTAAGAGGAGAGG+TGG | - | chr4.1:6183604-6183623 | None:intergenic | 55.0% | |
| CTCACAGACAGAGAGAGGGA+AGG | - | chr4.1:6182076-6182095 | None:intergenic | 55.0% | |
| ! | GCCCTCAAGGGCACATGTTA+AGG | - | chr4.1:6183316-6183335 | None:intergenic | 55.0% |
| !! | CACCTCTCCTCTTAGCCTTG+AGG | + | chr4.1:6183602-6183621 | MS.gene72149:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 6182010 | 6183770 | 6182010 | ID=MS.gene72149 |
| chr4.1 | mRNA | 6182010 | 6183770 | 6182010 | ID=MS.gene72149.t1;Parent=MS.gene72149 |
| chr4.1 | exon | 6182010 | 6182090 | 6182010 | ID=MS.gene72149.t1.exon1;Parent=MS.gene72149.t1 |
| chr4.1 | CDS | 6182010 | 6182090 | 6182010 | ID=cds.MS.gene72149.t1;Parent=MS.gene72149.t1 |
| chr4.1 | exon | 6182202 | 6182278 | 6182202 | ID=MS.gene72149.t1.exon2;Parent=MS.gene72149.t1 |
| chr4.1 | CDS | 6182202 | 6182278 | 6182202 | ID=cds.MS.gene72149.t1;Parent=MS.gene72149.t1 |
| chr4.1 | exon | 6182565 | 6182626 | 6182565 | ID=MS.gene72149.t1.exon3;Parent=MS.gene72149.t1 |
| chr4.1 | CDS | 6182565 | 6182626 | 6182565 | ID=cds.MS.gene72149.t1;Parent=MS.gene72149.t1 |
| chr4.1 | exon | 6182755 | 6182873 | 6182755 | ID=MS.gene72149.t1.exon4;Parent=MS.gene72149.t1 |
| chr4.1 | CDS | 6182755 | 6182873 | 6182755 | ID=cds.MS.gene72149.t1;Parent=MS.gene72149.t1 |
| chr4.1 | exon | 6183456 | 6183623 | 6183456 | ID=MS.gene72149.t1.exon5;Parent=MS.gene72149.t1 |
| chr4.1 | CDS | 6183456 | 6183623 | 6183456 | ID=cds.MS.gene72149.t1;Parent=MS.gene72149.t1 |
| chr4.1 | exon | 6183738 | 6183770 | 6183738 | ID=MS.gene72149.t1.exon6;Parent=MS.gene72149.t1 |
| chr4.1 | CDS | 6183738 | 6183770 | 6183738 | ID=cds.MS.gene72149.t1;Parent=MS.gene72149.t1 |
| Gene Sequence |
| Protein sequence |
