Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32673.t1 | XP_003603333.2 | 95.8 | 479 | 16 | 2 | 1 | 479 | 1 | 475 | 3.40E-204 | 721.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32673.t1 | D2XNR1 | 95.8 | 479 | 16 | 2 | 1 | 479 | 1 | 475 | 8.3e-207 | 721.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32673.t1 | G7JAE5 | 95.8 | 479 | 16 | 2 | 1 | 479 | 1 | 475 | 2.5e-204 | 721.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050173 | MS.gene32673 | 0.800983 | 1.12E-48 | -1.69E-46 |
| MS.gene050363 | MS.gene32673 | 0.807032 | 6.16E-50 | -1.69E-46 |
| MS.gene050961 | MS.gene32673 | 0.800721 | 1.26E-48 | -1.69E-46 |
| MS.gene052053 | MS.gene32673 | 0.852883 | 3.45E-61 | -1.69E-46 |
| MS.gene054626 | MS.gene32673 | 0.808798 | 2.59E-50 | -1.69E-46 |
| MS.gene055549 | MS.gene32673 | 0.81343 | 2.57E-51 | -1.69E-46 |
| MS.gene055550 | MS.gene32673 | 0.810239 | 1.27E-50 | -1.69E-46 |
| MS.gene057226 | MS.gene32673 | 0.805661 | 1.20E-49 | -1.69E-46 |
| MS.gene058628 | MS.gene32673 | 0.817904 | 2.59E-52 | -1.69E-46 |
| MS.gene058629 | MS.gene32673 | 0.805168 | 1.52E-49 | -1.69E-46 |
| MS.gene058630 | MS.gene32673 | 0.801816 | 7.53E-49 | -1.69E-46 |
| MS.gene05884 | MS.gene32673 | 0.818302 | 2.10E-52 | -1.69E-46 |
| MS.gene06012 | MS.gene32673 | 0.802831 | 4.65E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32673.t1 | MTR_3g106430 | 98.330 | 479 | 4 | 2 | 1 | 479 | 1 | 475 | 0.0 | 942 |
| MS.gene32673.t1 | MTR_3g106480 | 92.678 | 478 | 35 | 0 | 1 | 478 | 1 | 478 | 0.0 | 904 |
| MS.gene32673.t1 | MTR_3g106420 | 91.841 | 478 | 39 | 0 | 1 | 478 | 3 | 480 | 0.0 | 868 |
| MS.gene32673.t1 | MTR_3g106485 | 91.423 | 478 | 37 | 2 | 1 | 478 | 1 | 474 | 0.0 | 855 |
| MS.gene32673.t1 | MTR_1g083190 | 91.632 | 478 | 32 | 1 | 1 | 478 | 3 | 472 | 0.0 | 850 |
| MS.gene32673.t1 | MTR_1g073400 | 91.632 | 478 | 36 | 1 | 1 | 478 | 1 | 474 | 0.0 | 843 |
| MS.gene32673.t1 | MTR_1g115145 | 88.935 | 479 | 46 | 3 | 1 | 478 | 1 | 473 | 0.0 | 840 |
| MS.gene32673.t1 | MTR_1g071130 | 86.192 | 478 | 37 | 2 | 1 | 478 | 1 | 449 | 0.0 | 833 |
| MS.gene32673.t1 | MTR_3g106470 | 81.971 | 477 | 30 | 2 | 1 | 477 | 32 | 452 | 0.0 | 739 |
| MS.gene32673.t1 | MTR_8g063830 | 80.860 | 465 | 48 | 5 | 1 | 464 | 1 | 425 | 0.0 | 667 |
| MS.gene32673.t1 | MTR_3g065540 | 66.087 | 115 | 12 | 1 | 40 | 154 | 14 | 101 | 2.40e-41 | 143 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32673.t1 | AT5G25260 | 74.419 | 473 | 109 | 2 | 1 | 473 | 1 | 461 | 0.0 | 721 |
| MS.gene32673.t1 | AT5G25250 | 74.841 | 473 | 105 | 2 | 1 | 473 | 1 | 459 | 0.0 | 718 |
| MS.gene32673.t1 | AT5G64870 | 70.763 | 472 | 127 | 1 | 2 | 473 | 3 | 463 | 0.0 | 646 |
Find 121 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAATATTTCTCATATT+TGG | 0.034420 | 3.1:-84450680 | MS.gene32673:CDS |
| GTGAGATTGGTTCGAAATTA+AGG | 0.141080 | 3.1:-84450591 | MS.gene32673:CDS |
| CTGCTTCCATTTGTGTCTTT+TGG | 0.142752 | 3.1:+84450656 | None:intergenic |
| GAGTTTAAACAAGAAGTATT+TGG | 0.198991 | 3.1:-84450781 | MS.gene32673:CDS |
| ACTTCAAAGGTGTAATTTAC+AGG | 0.279006 | 3.1:+84451027 | None:intergenic |
| CATGAATATTTCTCATATTT+GGG | 0.285753 | 3.1:-84450679 | MS.gene32673:CDS |
| AGGGATTACTTAATGATAAA+TGG | 0.291040 | 3.1:-84449166 | MS.gene32673:CDS |
| CTGCTAAAGCCGTAGCTCTA+AGG | 0.291473 | 3.1:-84450351 | MS.gene32673:CDS |
| AACAAGTTCCTTAACATGAT+TGG | 0.309318 | 3.1:+84450879 | None:intergenic |
| AGTTTAAACAAGAAGTATTT+GGG | 0.333241 | 3.1:-84450780 | MS.gene32673:CDS |
| TCACAATACCTTGTGATAAC+TGG | 0.348490 | 3.1:-84451129 | MS.gene32673:CDS |
| AGAGCTATATGCAAAGAAAA+AGG | 0.353826 | 3.1:-84449278 | MS.gene32673:CDS |
| ATCATGAGGGGAAATTAGTT+TGG | 0.369987 | 3.1:+84450909 | None:intergenic |
| TGTAAATCAATAAACCGAAT+TGG | 0.376492 | 3.1:+84450737 | None:intergenic |
| GTAACATTCCCGTTTGTTCA+TGG | 0.378374 | 3.1:+84448969 | None:intergenic |
| AAGATTAGCATTTGGACTAA+TGG | 0.384982 | 3.1:-84449085 | MS.gene32673:CDS |
| TATAGGTACAAGAAGCAAAC+TGG | 0.387176 | 3.1:-84449420 | MS.gene32673:intron |
| TGAGATTGGTTCGAAATTAA+GGG | 0.391205 | 3.1:-84450590 | MS.gene32673:CDS |
| TTAGTCCAAATGCTAATCTT+AGG | 0.400981 | 3.1:+84449088 | None:intergenic |
| CAACTTGAACTAAACCAATT+CGG | 0.410262 | 3.1:-84450751 | MS.gene32673:CDS |
| GGCTGAGGCTAATTCTGAAT+TGG | 0.413100 | 3.1:-84450425 | MS.gene32673:CDS |
| TTGAGCCTAAGATTAGCATT+TGG | 0.413132 | 3.1:-84449093 | MS.gene32673:CDS |
| CGGTCCTCGTGTGGATGATA+AGG | 0.423356 | 3.1:-84450950 | MS.gene32673:CDS |
| ACTAATGGTGGTGATAATAG+TGG | 0.431222 | 3.1:-84449070 | MS.gene32673:CDS |
| GAAGAAAGCGGCTTGGACTA+AGG | 0.439534 | 3.1:-84450398 | MS.gene32673:CDS |
| TACCTTGTGATAACTGGAAT+CGG | 0.450729 | 3.1:-84451123 | MS.gene32673:CDS |
| TAAACTCTCCAATCATGTTA+AGG | 0.453562 | 3.1:-84450887 | MS.gene32673:CDS |
| AATGCTCAAGGGGTGTATCT+AGG | 0.460037 | 3.1:-84449229 | MS.gene32673:CDS |
| AATGTTACCACCTGCTTGGA+TGG | 0.462701 | 3.1:-84448954 | MS.gene32673:CDS |
| AAGACAGCGGGGAGAACAAA+AGG | 0.470694 | 3.1:+84450979 | None:intergenic |
| CATGTTAAGGAACTTGTTCA+AGG | 0.472007 | 3.1:-84450874 | MS.gene32673:CDS |
| GCTAAGATGAAAGGTGAGAT+TGG | 0.475874 | 3.1:-84450604 | MS.gene32673:CDS |
| CTCCCCGCTGTCTTCACTAT+CGG | 0.478414 | 3.1:-84450970 | MS.gene32673:CDS |
| TAAGACTGTCCATGAACAAA+CGG | 0.483381 | 3.1:-84448978 | MS.gene32673:CDS |
| GGGAATAACTGAAGGTGCCA+TGG | 0.487818 | 3.1:-84449047 | MS.gene32673:CDS |
| GAAACAACTACACAGCTGTA+AGG | 0.490449 | 3.1:-84449186 | MS.gene32673:CDS |
| CTCAAGTCCGCGTACCGCCT+CGG | 0.491620 | 3.1:+84449111 | None:intergenic |
| TTTGGGCCAAAAGACACAAA+TGG | 0.502028 | 3.1:-84450662 | MS.gene32673:CDS |
| CGGGAATGTTACCACCTGCT+TGG | 0.507160 | 3.1:-84448958 | MS.gene32673:CDS |
| TGCTTCAATGACAATGGAAG+AGG | 0.507417 | 3.1:-84450821 | MS.gene32673:CDS |
| CTCAAAATCAACCATGTACA+AGG | 0.508124 | 3.1:-84451163 | None:intergenic |
| CTAAGGGATGCTGAGTTACA+AGG | 0.508698 | 3.1:-84450334 | MS.gene32673:CDS |
| GAGAGAAGCTGAAGTGGCTG+AGG | 0.509792 | 3.1:-84450440 | MS.gene32673:CDS |
| CTTGTTCAAGGAATCATTGA+AGG | 0.510892 | 3.1:-84450862 | MS.gene32673:CDS |
| TTGGACTAAGGCGGCTCAAG+TGG | 0.511474 | 3.1:-84450386 | MS.gene32673:CDS |
| GAATCAGAGAGAAGCTGAAG+TGG | 0.511635 | 3.1:-84450446 | MS.gene32673:CDS |
| GTTATTGCGATGCAGAGGGC+TGG | 0.513050 | 3.1:-84450520 | MS.gene32673:CDS |
| GGACCGATAGTGAAGACAGC+GGG | 0.513792 | 3.1:+84450967 | None:intergenic |
| AAGACTGTCCATGAACAAAC+GGG | 0.515531 | 3.1:-84448977 | MS.gene32673:CDS |
| GGCTCAAGTGGCCGAAGTTG+AGG | 0.521394 | 3.1:-84450374 | MS.gene32673:CDS |
| GCTGGAGAGGGCGACAAGGA+GGG | 0.521545 | 3.1:-84450502 | MS.gene32673:CDS |
| GAAGACGGAGTAGGATTGAC+CGG | 0.524836 | 3.1:+84451059 | None:intergenic |
| GAGGGCTGGAGAGGGCGACA+AGG | 0.525696 | 3.1:-84450506 | MS.gene32673:CDS |
| GTAACACTTGGGAATGCTCA+AGG | 0.527999 | 3.1:-84449241 | MS.gene32673:CDS |
| TGCTAAAGCCGTAGCTCTAA+GGG | 0.534229 | 3.1:-84450350 | MS.gene32673:CDS |
| GGAATAACTGAAGGTGCCAT+GGG | 0.534697 | 3.1:-84449046 | MS.gene32673:CDS |
| AGCAACTTCTTTCATACCCA+TGG | 0.534773 | 3.1:+84449030 | None:intergenic |
| GGCAAGACTCCCATCCAAGC+AGG | 0.534806 | 3.1:+84448944 | None:intergenic |
| GCAGAGGGAATTGTAACACT+TGG | 0.536418 | 3.1:-84449253 | MS.gene32673:CDS |
| GGCTGGAGAGGGCGACAAGG+AGG | 0.536888 | 3.1:-84450503 | MS.gene32673:CDS |
| GCTCATTGCTTGAACTTCAA+AGG | 0.540493 | 3.1:+84451014 | None:intergenic |
| GCGATGCAGAGGGCTGGAGA+GGG | 0.540981 | 3.1:-84450514 | MS.gene32673:CDS |
| CTCAGCATCCCTTAGAGCTA+CGG | 0.547484 | 3.1:+84450342 | None:intergenic |
| TGCGATGCAGAGGGCTGGAG+AGG | 0.550159 | 3.1:-84450515 | MS.gene32673:CDS |
| ATTGAACGCTAGCTTTGCTA+AGG | 0.553614 | 3.1:+84450257 | None:intergenic |
| TAAAGCTTGCAAAGAAAGCA+TGG | 0.553863 | 3.1:-84451089 | MS.gene32673:CDS |
| TTAGTTTGGCGTATTTGAGA+AGG | 0.553890 | 3.1:+84450923 | None:intergenic |
| TAAAGTGAGGACTGAAGTGA+AGG | 0.556664 | 3.1:-84450476 | MS.gene32673:CDS |
| TGGCTAAGAAGAAAGCGGCT+TGG | 0.558254 | 3.1:-84450405 | MS.gene32673:CDS |
| AAACAGTTAGTTGATGTGCC+AGG | 0.562976 | 3.1:-84450703 | MS.gene32673:CDS |
| TTTGTATGAGAAGAAGGCAG+AGG | 0.567950 | 3.1:-84449362 | MS.gene32673:CDS |
| ATGTTACCACCTGCTTGGAT+GGG | 0.569893 | 3.1:-84448953 | MS.gene32673:CDS |
| GGAGCTGTACAAGAAACAAA+AGG | 0.571542 | 3.1:-84449398 | MS.gene32673:CDS |
| TCATGGACAGTCTTAAACAA+AGG | 0.574375 | 3.1:+84448986 | None:intergenic |
| TGGAAGCAGCGAATCAAGCA+AGG | 0.574713 | 3.1:-84450642 | MS.gene32673:CDS |
| CTTCACTATCGGTCCTCGTG+TGG | 0.576587 | 3.1:-84450959 | MS.gene32673:CDS |
| TGAGAGGTCGAAGACGGAGT+AGG | 0.579128 | 3.1:+84451050 | None:intergenic |
| ATGGGTATGAAAGAAGTTGC+TGG | 0.579940 | 3.1:-84449028 | MS.gene32673:CDS |
| TAACACTTGGGAATGCTCAA+GGG | 0.580610 | 3.1:-84449240 | MS.gene32673:CDS |
| GGTGCACTTCTGAATGCACT+TGG | 0.581068 | 3.1:-84449208 | MS.gene32673:CDS |
| CCTCGCTGCTTCAATGACAA+TGG | 0.585018 | 3.1:-84450827 | MS.gene32673:CDS |
| AAACAACTACACAGCTGTAA+GGG | 0.585417 | 3.1:-84449185 | MS.gene32673:CDS |
| CTAATGGTGGTGATAATAGT+GGG | 0.587233 | 3.1:-84449069 | MS.gene32673:CDS |
| GGCTTTAGCAGCCTCAACTT+CGG | 0.588855 | 3.1:+84450363 | None:intergenic |
| ATTAGCATTTGGACTAATGG+TGG | 0.590526 | 3.1:-84449082 | MS.gene32673:CDS |
| GATTGGAGAGTTTATCATGA+GGG | 0.592992 | 3.1:+84450896 | None:intergenic |
| CAAAGGTTATTGCGATGCAG+AGG | 0.594400 | 3.1:-84450525 | MS.gene32673:CDS |
| TTCCGATTCCAGTTATCACA+AGG | 0.603437 | 3.1:+84451121 | None:intergenic |
| GTATCAGAAGCTAAGATGAA+AGG | 0.607033 | 3.1:-84450613 | MS.gene32673:CDS |
| AGTTACAAGGTGAAGTTGAG+AGG | 0.609202 | 3.1:-84450321 | MS.gene32673:CDS |
| ATTGGAGAGTTTATCATGAG+GGG | 0.615848 | 3.1:+84450897 | None:intergenic |
| TGAATTGGCTAAGAAGAAAG+CGG | 0.615999 | 3.1:-84450410 | MS.gene32673:CDS |
| CAGAGGGAATTGTAACACTT+GGG | 0.616845 | 3.1:-84449252 | MS.gene32673:CDS |
| ATAGGTACAAGAAGCAAACT+GGG | 0.617338 | 3.1:-84449419 | MS.gene32673:intron |
| TACAGGTGAGAGGTCGAAGA+CGG | 0.620713 | 3.1:+84451044 | None:intergenic |
| AAAGGTTATTGCGATGCAGA+GGG | 0.625617 | 3.1:-84450524 | MS.gene32673:CDS |
| GTACAAGAAACAAAAGGAGG+CGG | 0.626062 | 3.1:-84449392 | MS.gene32673:CDS |
| AACACTTGGGAATGCTCAAG+GGG | 0.627744 | 3.1:-84449239 | MS.gene32673:CDS |
| AATGGTGGTGATAATAGTGG+GGG | 0.629638 | 3.1:-84449067 | MS.gene32673:CDS |
| AGGTGTAATTTACAGGTGAG+AGG | 0.630097 | 3.1:+84451034 | None:intergenic |
| ATTGGTTCGAAATTAAGGGA+AGG | 0.631020 | 3.1:-84450586 | MS.gene32673:CDS |
| TAATGGTGGTGATAATAGTG+GGG | 0.634711 | 3.1:-84449068 | MS.gene32673:CDS |
| GATTACTTAATGATAAATGG+TGG | 0.642965 | 3.1:-84449163 | MS.gene32673:CDS |
| GATTGCTAAGATTAATGCCG+AGG | 0.643593 | 3.1:-84449128 | MS.gene32673:CDS |
| TGGACAGTCTTAAACAAAGG+TGG | 0.647859 | 3.1:+84448989 | None:intergenic |
| TATGAGAAATATTCATGACC+TGG | 0.653740 | 3.1:+84450685 | None:intergenic |
| AAGACGGAGTAGGATTGACC+GGG | 0.657113 | 3.1:+84451060 | None:intergenic |
| TGCTAAGATTAATGCCGAGG+CGG | 0.661554 | 3.1:-84449125 | MS.gene32673:CDS |
| TAGCGTTCAATATGAAACCA+AGG | 0.661629 | 3.1:-84450245 | MS.gene32673:intron |
| AAGAAAGCATGGATTCTACC+CGG | 0.664070 | 3.1:-84451078 | MS.gene32673:CDS |
| GGAAGCAGCGAATCAAGCAA+GGG | 0.666342 | 3.1:-84450641 | MS.gene32673:CDS |
| TGATTGGAGAGTTTATCATG+AGG | 0.672105 | 3.1:+84450895 | None:intergenic |
| AAGACTCCCATCCAAGCAGG+TGG | 0.679480 | 3.1:+84448947 | None:intergenic |
| ATTAATGCCGAGGCGGTACG+CGG | 0.680968 | 3.1:-84449118 | MS.gene32673:CDS |
| ACAAGGAGGGAATTAAAGTG+AGG | 0.693697 | 3.1:-84450489 | MS.gene32673:CDS |
| CTTTCCTTATCATCCACACG+AGG | 0.701431 | 3.1:+84450946 | None:intergenic |
| CCATTGTCATTGAAGCAGCG+AGG | 0.707893 | 3.1:+84450827 | None:intergenic |
| GACCGATAGTGAAGACAGCG+GGG | 0.713902 | 3.1:+84450968 | None:intergenic |
| GCTGTACAAGAAACAAAAGG+AGG | 0.725038 | 3.1:-84449395 | MS.gene32673:CDS |
| GAAAGCGGCTTGGACTAAGG+CGG | 0.747622 | 3.1:-84450395 | MS.gene32673:CDS |
| AGGACCGATAGTGAAGACAG+CGG | 0.753084 | 3.1:+84450966 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATAGTTAATACCTATT+AGG | - | chr3.1:84450558-84450577 | MS.gene32673:CDS | 15.0% |
| !! | TAGGTATTAACTATTAATTT+AGG | + | chr3.1:84450556-84450575 | None:intergenic | 15.0% |
| !!! | GTTGCATTTTTTTAAATAAT+TGG | - | chr3.1:84450286-84450305 | MS.gene32673:CDS | 15.0% |
| !! | CATGAATATTTCTCATATTT+GGG | - | chr3.1:84449396-84449415 | MS.gene32673:CDS | 20.0% |
| !! | TCATGAATATTTCTCATATT+TGG | - | chr3.1:84449395-84449414 | MS.gene32673:CDS | 20.0% |
| !!! | AGTTTAAACAAGAAGTATTT+GGG | - | chr3.1:84449295-84449314 | MS.gene32673:CDS | 20.0% |
| !!! | TGATTATTGATTCTGTTATA+TGG | - | chr3.1:84450253-84450272 | MS.gene32673:CDS | 20.0% |
| ! | AATTCTCTATTAAGCTGTTA+TGG | + | chr3.1:84450342-84450361 | None:intergenic | 25.0% |
| ! | AGGGATTACTTAATGATAAA+TGG | - | chr3.1:84450909-84450928 | MS.gene32673:CDS | 25.0% |
| ! | ATGCATTATACAATTACAAG+TGG | - | chr3.1:84450510-84450529 | MS.gene32673:CDS | 25.0% |
| ! | ATTTATTTACTAGGCCTAAT+AGG | + | chr3.1:84450575-84450594 | None:intergenic | 25.0% |
| ! | CATTTGGTTAAACCTTAAAA+GGG | + | chr3.1:84450113-84450132 | None:intergenic | 25.0% |
| ! | GATTACTTAATGATAAATGG+TGG | - | chr3.1:84450912-84450931 | MS.gene32673:CDS | 25.0% |
| ! | TAGCAACAAGATTAATAGTT+TGG | - | chr3.1:84449988-84450007 | MS.gene32673:intron | 25.0% |
| ! | TCATTTGGTTAAACCTTAAA+AGG | + | chr3.1:84450114-84450133 | None:intergenic | 25.0% |
| ! | TGTAAATCAATAAACCGAAT+TGG | + | chr3.1:84449341-84449360 | None:intergenic | 25.0% |
| !!! | GAGTTTAAACAAGAAGTATT+TGG | - | chr3.1:84449294-84449313 | MS.gene32673:CDS | 25.0% |
| !!! | TTTTTTCGTGATTGAAATTC+TGG | - | chr3.1:84450628-84450647 | MS.gene32673:CDS | 25.0% |
| AAAAATTGATGCAGAGACAA+AGG | - | chr3.1:84449533-84449552 | MS.gene32673:intron | 30.0% | |
| AACAAGTTCCTTAACATGAT+TGG | + | chr3.1:84449199-84449218 | None:intergenic | 30.0% | |
| AAGATTAGCATTTGGACTAA+TGG | - | chr3.1:84450990-84451009 | MS.gene32673:CDS | 30.0% | |
| AGAGCTATATGCAAAGAAAA+AGG | - | chr3.1:84450797-84450816 | MS.gene32673:CDS | 30.0% | |
| ATATTATTCTATCGAGTAGC+GGG | + | chr3.1:84450492-84450511 | None:intergenic | 30.0% | |
| ATTGAAATTCTGGATGGTAT+AGG | - | chr3.1:84450638-84450657 | MS.gene32673:CDS | 30.0% | |
| CAACTTGAACTAAACCAATT+CGG | - | chr3.1:84449324-84449343 | MS.gene32673:CDS | 30.0% | |
| CATATTATTCTATCGAGTAG+CGG | + | chr3.1:84450493-84450512 | None:intergenic | 30.0% | |
| TAAACTCTCCAATCATGTTA+AGG | - | chr3.1:84449188-84449207 | MS.gene32673:CDS | 30.0% | |
| TACTATAATGAGATCACAGT+TGG | - | chr3.1:84450437-84450456 | MS.gene32673:CDS | 30.0% | |
| TATGAGAAATATTCATGACC+TGG | + | chr3.1:84449393-84449412 | None:intergenic | 30.0% | |
| TTAGTCCAAATGCTAATCTT+AGG | + | chr3.1:84450990-84451009 | None:intergenic | 30.0% | |
| ! | ACTTCAAAGGTGTAATTTAC+AGG | + | chr3.1:84449051-84449070 | None:intergenic | 30.0% |
| ! | TCAACACTATTTTACAACCT+TGG | - | chr3.1:84450361-84450380 | MS.gene32673:CDS | 30.0% |
| !! | GTTTTAAACTCTCCCTTTTA+AGG | - | chr3.1:84450098-84450117 | MS.gene32673:intron | 30.0% |
| !! | TATTTTACAACCTTGGTGAT+TGG | - | chr3.1:84450368-84450387 | MS.gene32673:CDS | 30.0% |
| !! | TGAGATTGGTTCGAAATTAA+GGG | - | chr3.1:84449485-84449504 | MS.gene32673:intron | 30.0% |
| AAACAACTACACAGCTGTAA+GGG | - | chr3.1:84450890-84450909 | MS.gene32673:CDS | 35.0% | |
| ACTCATGATCAATGGACAAT+GGG | - | chr3.1:84450139-84450158 | MS.gene32673:intron | 35.0% | |
| ATAGGTACAAGAAGCAAACT+GGG | - | chr3.1:84450656-84450675 | MS.gene32673:CDS | 35.0% | |
| ATCATGAGGGGAAATTAGTT+TGG | + | chr3.1:84449169-84449188 | None:intergenic | 35.0% | |
| ATTAGCATTTGGACTAATGG+TGG | - | chr3.1:84450993-84451012 | MS.gene32673:CDS | 35.0% | |
| ATTGGAGAGTTTATCATGAG+GGG | + | chr3.1:84449181-84449200 | None:intergenic | 35.0% | |
| CTTGTTCAAGGAATCATTGA+AGG | - | chr3.1:84449213-84449232 | MS.gene32673:CDS | 35.0% | |
| GATTGGAGAGTTTATCATGA+GGG | + | chr3.1:84449182-84449201 | None:intergenic | 35.0% | |
| GCTATATGCAAAGAAAAAGG+AGG | - | chr3.1:84450800-84450819 | MS.gene32673:CDS | 35.0% | |
| GTATCAGAAGCTAAGATGAA+AGG | - | chr3.1:84449462-84449481 | MS.gene32673:intron | 35.0% | |
| TAAAGCTTGCAAAGAAAGCA+TGG | - | chr3.1:84448986-84449005 | MS.gene32673:CDS | 35.0% | |
| TAAGACTGTCCATGAACAAA+CGG | - | chr3.1:84451097-84451116 | MS.gene32673:CDS | 35.0% | |
| TACCTTGTGATAACTGGAAT+CGG | - | chr3.1:84448952-84448971 | MS.gene32673:CDS | 35.0% | |
| TAGCGTTCAATATGAAACCA+AGG | - | chr3.1:84449830-84449849 | MS.gene32673:intron | 35.0% | |
| TATAGGTACAAGAAGCAAAC+TGG | - | chr3.1:84450655-84450674 | MS.gene32673:CDS | 35.0% | |
| TATTATTCTATCGAGTAGCG+GGG | + | chr3.1:84450491-84450510 | None:intergenic | 35.0% | |
| TCACAATACCTTGTGATAAC+TGG | - | chr3.1:84448946-84448965 | MS.gene32673:CDS | 35.0% | |
| TCATGGACAGTCTTAAACAA+AGG | + | chr3.1:84451092-84451111 | None:intergenic | 35.0% | |
| TGAATTGGCTAAGAAGAAAG+CGG | - | chr3.1:84449665-84449684 | MS.gene32673:intron | 35.0% | |
| TGATTGGAGAGTTTATCATG+AGG | + | chr3.1:84449183-84449202 | None:intergenic | 35.0% | |
| TGCATGTACTAAACTAACCT+TGG | + | chr3.1:84449850-84449869 | None:intergenic | 35.0% | |
| TTCGTGATTGAAATTCTGGA+TGG | - | chr3.1:84450632-84450651 | MS.gene32673:CDS | 35.0% | |
| TTGAGCCTAAGATTAGCATT+TGG | - | chr3.1:84450982-84451001 | MS.gene32673:CDS | 35.0% | |
| TTGATTGATACCAATCACCA+AGG | + | chr3.1:84450381-84450400 | None:intergenic | 35.0% | |
| ! | ACTAATGGTGGTGATAATAG+TGG | - | chr3.1:84451005-84451024 | MS.gene32673:CDS | 35.0% |
| ! | AGCGATTTTGTATGAGAAGA+AGG | - | chr3.1:84450707-84450726 | MS.gene32673:CDS | 35.0% |
| ! | CATGTTAAGGAACTTGTTCA+AGG | - | chr3.1:84449201-84449220 | MS.gene32673:CDS | 35.0% |
| ! | CTAATGGTGGTGATAATAGT+GGG | - | chr3.1:84451006-84451025 | MS.gene32673:CDS | 35.0% |
| ! | TAATGGTGGTGATAATAGTG+GGG | - | chr3.1:84451007-84451026 | MS.gene32673:CDS | 35.0% |
| ! | TTAGTTTGGCGTATTTGAGA+AGG | + | chr3.1:84449155-84449174 | None:intergenic | 35.0% |
| !! | ATTGGTTCGAAATTAAGGGA+AGG | - | chr3.1:84449489-84449508 | MS.gene32673:intron | 35.0% |
| !! | GTGAGATTGGTTCGAAATTA+AGG | - | chr3.1:84449484-84449503 | MS.gene32673:intron | 35.0% |
| AAAGGTTATTGCGATGCAGA+GGG | - | chr3.1:84449551-84449570 | MS.gene32673:intron | 40.0% | |
| AAGACTGTCCATGAACAAAC+GGG | - | chr3.1:84451098-84451117 | MS.gene32673:CDS | 40.0% | |
| ACAAGGAGGGAATTAAAGTG+AGG | - | chr3.1:84449586-84449605 | MS.gene32673:intron | 40.0% | |
| AGCAACTTCTTTCATACCCA+TGG | + | chr3.1:84451048-84451067 | None:intergenic | 40.0% | |
| AGGTGTAATTTACAGGTGAG+AGG | + | chr3.1:84449044-84449063 | None:intergenic | 40.0% | |
| AGTTACAAGGTGAAGTTGAG+AGG | - | chr3.1:84449754-84449773 | MS.gene32673:intron | 40.0% | |
| ATGGGTATGAAAGAAGTTGC+TGG | - | chr3.1:84451047-84451066 | MS.gene32673:CDS | 40.0% | |
| ATTATTCTATCGAGTAGCGG+GGG | + | chr3.1:84450490-84450509 | None:intergenic | 40.0% | |
| CACTCATGATCAATGGACAA+TGG | - | chr3.1:84450138-84450157 | MS.gene32673:intron | 40.0% | |
| CAGAGGGAATTGTAACACTT+GGG | - | chr3.1:84450823-84450842 | MS.gene32673:CDS | 40.0% | |
| GAAACAACTACACAGCTGTA+AGG | - | chr3.1:84450889-84450908 | MS.gene32673:CDS | 40.0% | |
| GATCATGAGTGTGACTCATT+TGG | + | chr3.1:84450129-84450148 | None:intergenic | 40.0% | |
| GATTGCTAAGATTAATGCCG+AGG | - | chr3.1:84450947-84450966 | MS.gene32673:CDS | 40.0% | |
| GCTAAGATGAAAGGTGAGAT+TGG | - | chr3.1:84449471-84449490 | MS.gene32673:intron | 40.0% | |
| GCTCATTGCTTGAACTTCAA+AGG | + | chr3.1:84449064-84449083 | None:intergenic | 40.0% | |
| GCTGTACAAGAAACAAAAGG+AGG | - | chr3.1:84450680-84450699 | MS.gene32673:CDS | 40.0% | |
| GGAGCTGTACAAGAAACAAA+AGG | - | chr3.1:84450677-84450696 | MS.gene32673:CDS | 40.0% | |
| GTAACATTCCCGTTTGTTCA+TGG | + | chr3.1:84451109-84451128 | None:intergenic | 40.0% | |
| GTACAAGAAACAAAAGGAGG+CGG | - | chr3.1:84450683-84450702 | MS.gene32673:CDS | 40.0% | |
| TAAAGTGAGGACTGAAGTGA+AGG | - | chr3.1:84449599-84449618 | MS.gene32673:intron | 40.0% | |
| TAACACTTGGGAATGCTCAA+GGG | - | chr3.1:84450835-84450854 | MS.gene32673:CDS | 40.0% | |
| TGAGTCACACTCATGATCAA+TGG | - | chr3.1:84450131-84450150 | MS.gene32673:intron | 40.0% | |
| TGCTTCAATGACAATGGAAG+AGG | - | chr3.1:84449254-84449273 | MS.gene32673:CDS | 40.0% | |
| TGGACAGTCTTAAACAAAGG+TGG | + | chr3.1:84451089-84451108 | None:intergenic | 40.0% | |
| TTCCGATTCCAGTTATCACA+AGG | + | chr3.1:84448957-84448976 | None:intergenic | 40.0% | |
| TTTGGGCCAAAAGACACAAA+TGG | - | chr3.1:84449413-84449432 | MS.gene32673:CDS | 40.0% | |
| TTTGTATGAGAAGAAGGCAG+AGG | - | chr3.1:84450713-84450732 | MS.gene32673:CDS | 40.0% | |
| ! | AAACAGTTAGTTGATGTGCC+AGG | - | chr3.1:84449372-84449391 | MS.gene32673:CDS | 40.0% |
| ! | AAGAAAGCATGGATTCTACC+CGG | - | chr3.1:84448997-84449016 | MS.gene32673:CDS | 40.0% |
| ! | AATAGTGGGGGAATAACTGA+AGG | - | chr3.1:84451020-84451039 | MS.gene32673:CDS | 40.0% |
| ! | AATGGTGGTGATAATAGTGG+GGG | - | chr3.1:84451008-84451027 | MS.gene32673:CDS | 40.0% |
| ! | ACAATGGAAGAGGTTTTCAG+AGG | - | chr3.1:84449264-84449283 | MS.gene32673:CDS | 40.0% |
| ! | CTGCTTCCATTTGTGTCTTT+TGG | + | chr3.1:84449422-84449441 | None:intergenic | 40.0% |
| !! | ATTGAACGCTAGCTTTGCTA+AGG | + | chr3.1:84449821-84449840 | None:intergenic | 40.0% |
| AACACTTGGGAATGCTCAAG+GGG | - | chr3.1:84450836-84450855 | MS.gene32673:CDS | 45.0% | |
| AATGTTACCACCTGCTTGGA+TGG | - | chr3.1:84451121-84451140 | MS.gene32673:CDS | 45.0% | |
| ATGTTACCACCTGCTTGGAT+GGG | - | chr3.1:84451122-84451141 | MS.gene32673:CDS | 45.0% | |
| CAAAGGTTATTGCGATGCAG+AGG | - | chr3.1:84449550-84449569 | MS.gene32673:intron | 45.0% | |
| CTAAGGGATGCTGAGTTACA+AGG | - | chr3.1:84449741-84449760 | MS.gene32673:intron | 45.0% | |
| CTTTCCTTATCATCCACACG+AGG | + | chr3.1:84449132-84449151 | None:intergenic | 45.0% | |
| GAATCAGAGAGAAGCTGAAG+TGG | - | chr3.1:84449629-84449648 | MS.gene32673:intron | 45.0% | |
| GCAAAGAAAAAGGAGGCAGA+GGG | - | chr3.1:84450807-84450826 | MS.gene32673:CDS | 45.0% | |
| GCAGAGGGAATTGTAACACT+TGG | - | chr3.1:84450822-84450841 | MS.gene32673:CDS | 45.0% | |
| GGCTGAGGCTAATTCTGAAT+TGG | - | chr3.1:84449650-84449669 | MS.gene32673:intron | 45.0% | |
| GTAACACTTGGGAATGCTCA+AGG | - | chr3.1:84450834-84450853 | MS.gene32673:CDS | 45.0% | |
| TGCAAAGAAAAAGGAGGCAG+AGG | - | chr3.1:84450806-84450825 | MS.gene32673:CDS | 45.0% | |
| TGCTAAGATTAATGCCGAGG+CGG | - | chr3.1:84450950-84450969 | MS.gene32673:CDS | 45.0% | |
| ! | AATGCTCAAGGGGTGTATCT+AGG | - | chr3.1:84450846-84450865 | MS.gene32673:CDS | 45.0% |
| !! | GGAATAACTGAAGGTGCCAT+GGG | - | chr3.1:84451029-84451048 | MS.gene32673:CDS | 45.0% |
| !! | TGCTAAAGCCGTAGCTCTAA+GGG | - | chr3.1:84449725-84449744 | MS.gene32673:intron | 45.0% |
| !! | ATATATATAATTTATTTACT+AGG | + | chr3.1:84450584-84450603 | None:intergenic | 5.0% |
| !!! | ATAAAAGATTAATATTTTTA+AGG | - | chr3.1:84450164-84450183 | MS.gene32673:intron | 5.0% |
| AAGACAGCGGGGAGAACAAA+AGG | + | chr3.1:84449099-84449118 | None:intergenic | 50.0% | |
| AAGACGGAGTAGGATTGACC+GGG | + | chr3.1:84449018-84449037 | None:intergenic | 50.0% | |
| AGGACCGATAGTGAAGACAG+CGG | + | chr3.1:84449112-84449131 | None:intergenic | 50.0% | |
| CCATTGTCATTGAAGCAGCG+AGG | + | chr3.1:84449251-84449270 | None:intergenic | 50.0% | |
| CCTCGCTGCTTCAATGACAA+TGG | - | chr3.1:84449248-84449267 | MS.gene32673:CDS | 50.0% | |
| CTCAGCATCCCTTAGAGCTA+CGG | + | chr3.1:84449736-84449755 | None:intergenic | 50.0% | |
| GAAGACGGAGTAGGATTGAC+CGG | + | chr3.1:84449019-84449038 | None:intergenic | 50.0% | |
| GGAAGCAGCGAATCAAGCAA+GGG | - | chr3.1:84449434-84449453 | MS.gene32673:intron | 50.0% | |
| GGTGCACTTCTGAATGCACT+TGG | - | chr3.1:84450867-84450886 | MS.gene32673:CDS | 50.0% | |
| TACAGGTGAGAGGTCGAAGA+CGG | + | chr3.1:84449034-84449053 | None:intergenic | 50.0% | |
| TGGAAGCAGCGAATCAAGCA+AGG | - | chr3.1:84449433-84449452 | MS.gene32673:intron | 50.0% | |
| TGGCTAAGAAGAAAGCGGCT+TGG | - | chr3.1:84449670-84449689 | MS.gene32673:intron | 50.0% | |
| ! | CTGCTAAAGCCGTAGCTCTA+AGG | - | chr3.1:84449724-84449743 | MS.gene32673:intron | 50.0% |
| ! | GAAGAAAGCGGCTTGGACTA+AGG | - | chr3.1:84449677-84449696 | MS.gene32673:intron | 50.0% |
| ! | GGCTTTAGCAGCCTCAACTT+CGG | + | chr3.1:84449715-84449734 | None:intergenic | 50.0% |
| ! | TAGCGGGGGAGCTAACTTTT+GGG | + | chr3.1:84450476-84450495 | None:intergenic | 50.0% |
| !! | GGGAATAACTGAAGGTGCCA+TGG | - | chr3.1:84451028-84451047 | MS.gene32673:CDS | 50.0% |
| AAGACTCCCATCCAAGCAGG+TGG | + | chr3.1:84451131-84451150 | None:intergenic | 55.0% | |
| ATTAATGCCGAGGCGGTACG+CGG | - | chr3.1:84450957-84450976 | MS.gene32673:CDS | 55.0% | |
| CGGGAATGTTACCACCTGCT+TGG | - | chr3.1:84451117-84451136 | MS.gene32673:CDS | 55.0% | |
| CGGTCCTCGTGTGGATGATA+AGG | - | chr3.1:84449125-84449144 | MS.gene32673:CDS | 55.0% | |
| CTCCCCGCTGTCTTCACTAT+CGG | - | chr3.1:84449105-84449124 | MS.gene32673:CDS | 55.0% | |
| CTTCACTATCGGTCCTCGTG+TGG | - | chr3.1:84449116-84449135 | MS.gene32673:CDS | 55.0% | |
| GACCGATAGTGAAGACAGCG+GGG | + | chr3.1:84449110-84449129 | None:intergenic | 55.0% | |
| GAGAGAAGCTGAAGTGGCTG+AGG | - | chr3.1:84449635-84449654 | MS.gene32673:intron | 55.0% | |
| GGACCGATAGTGAAGACAGC+GGG | + | chr3.1:84449111-84449130 | None:intergenic | 55.0% | |
| GTTATTGCGATGCAGAGGGC+TGG | - | chr3.1:84449555-84449574 | MS.gene32673:intron | 55.0% | |
| TGAGAGGTCGAAGACGGAGT+AGG | + | chr3.1:84449028-84449047 | None:intergenic | 55.0% | |
| TTGGACTAAGGCGGCTCAAG+TGG | - | chr3.1:84449689-84449708 | MS.gene32673:intron | 55.0% | |
| ! | GAAAGCGGCTTGGACTAAGG+CGG | - | chr3.1:84449680-84449699 | MS.gene32673:intron | 55.0% |
| !! | GTAGCGGGGGAGCTAACTTT+TGG | + | chr3.1:84450477-84450496 | None:intergenic | 55.0% |
| GGCAAGACTCCCATCCAAGC+AGG | + | chr3.1:84451134-84451153 | None:intergenic | 60.0% | |
| GGCTCAAGTGGCCGAAGTTG+AGG | - | chr3.1:84449701-84449720 | MS.gene32673:intron | 60.0% | |
| CTCAAGTCCGCGTACCGCCT+CGG | + | chr3.1:84450967-84450986 | None:intergenic | 65.0% | |
| GCGATGCAGAGGGCTGGAGA+GGG | - | chr3.1:84449561-84449580 | MS.gene32673:intron | 65.0% | |
| GCTGGAGAGGGCGACAAGGA+GGG | - | chr3.1:84449573-84449592 | MS.gene32673:intron | 65.0% | |
| TGCGATGCAGAGGGCTGGAG+AGG | - | chr3.1:84449560-84449579 | MS.gene32673:intron | 65.0% | |
| GAGGGCTGGAGAGGGCGACA+AGG | - | chr3.1:84449569-84449588 | MS.gene32673:intron | 70.0% | |
| GGCTGGAGAGGGCGACAAGG+AGG | - | chr3.1:84449572-84449591 | MS.gene32673:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 84448925 | 84451172 | 84448925 | ID=MS.gene32673 |
| chr3.1 | mRNA | 84448925 | 84451172 | 84448925 | ID=MS.gene32673.t1;Parent=MS.gene32673 |
| chr3.1 | exon | 84450246 | 84451172 | 84450246 | ID=MS.gene32673.t1.exon1;Parent=MS.gene32673.t1 |
| chr3.1 | CDS | 84450246 | 84451172 | 84450246 | ID=cds.MS.gene32673.t1;Parent=MS.gene32673.t1 |
| chr3.1 | exon | 84448925 | 84449437 | 84448925 | ID=MS.gene32673.t1.exon2;Parent=MS.gene32673.t1 |
| chr3.1 | CDS | 84448925 | 84449437 | 84448925 | ID=cds.MS.gene32673.t1;Parent=MS.gene32673.t1 |
| Gene Sequence |
| Protein sequence |
