Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07536.t1 | XP_013468904.1 | 100 | 360 | 0 | 0 | 1 | 360 | 69 | 428 | 1.80E-213 | 751.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07536.t1 | Q9S9K4 | 52.5 | 360 | 164 | 4 | 1 | 360 | 73 | 425 | 4.4e-112 | 406.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07536.t1 | A0A072VMV4 | 100.0 | 360 | 0 | 0 | 1 | 360 | 69 | 428 | 1.3e-213 | 751.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene07536 | 0.872843 | 2.33E-67 | -1.69E-46 |
| MS.gene049669 | MS.gene07536 | 0.819423 | 1.17E-52 | -1.69E-46 |
| MS.gene050226 | MS.gene07536 | 0.838024 | 3.68E-57 | -1.69E-46 |
| MS.gene050227 | MS.gene07536 | 0.859007 | 5.57E-63 | -1.69E-46 |
| MS.gene050228 | MS.gene07536 | 0.855984 | 4.37E-62 | -1.69E-46 |
| MS.gene050330 | MS.gene07536 | -0.811257 | 7.67E-51 | -1.69E-46 |
| MS.gene050442 | MS.gene07536 | 0.845592 | 3.69E-59 | -1.69E-46 |
| MS.gene050558 | MS.gene07536 | 0.81724 | 3.65E-52 | -1.69E-46 |
| MS.gene050623 | MS.gene07536 | -0.807287 | 5.44E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene07536 | 0.854414 | 1.25E-61 | -1.69E-46 |
| MS.gene050721 | MS.gene07536 | 0.850888 | 1.27E-60 | -1.69E-46 |
| MS.gene050724 | MS.gene07536 | 0.831085 | 2.04E-55 | -1.69E-46 |
| MS.gene050750 | MS.gene07536 | 0.806151 | 9.46E-50 | -1.69E-46 |
| MS.gene050780 | MS.gene07536 | 0.826723 | 2.32E-54 | -1.69E-46 |
| MS.gene050787 | MS.gene07536 | 0.812588 | 3.93E-51 | -1.69E-46 |
| MS.gene050820 | MS.gene07536 | 0.822516 | 2.27E-53 | -1.69E-46 |
| MS.gene050824 | MS.gene07536 | 0.806968 | 6.36E-50 | -1.69E-46 |
| MS.gene051265 | MS.gene07536 | 0.817178 | 3.77E-52 | -1.69E-46 |
| MS.gene051935 | MS.gene07536 | 0.806496 | 8.00E-50 | -1.69E-46 |
| MS.gene052176 | MS.gene07536 | 0.885338 | 8.86E-72 | -1.69E-46 |
| MS.gene052302 | MS.gene07536 | 0.808809 | 2.58E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene07536 | 0.815562 | 8.67E-52 | -1.69E-46 |
| MS.gene052389 | MS.gene07536 | 0.865154 | 7.26E-65 | -1.69E-46 |
| MS.gene052586 | MS.gene07536 | 0.811658 | 6.27E-51 | -1.69E-46 |
| MS.gene052856 | MS.gene07536 | 0.800475 | 1.42E-48 | -1.69E-46 |
| MS.gene052858 | MS.gene07536 | 0.800161 | 1.64E-48 | -1.69E-46 |
| MS.gene053147 | MS.gene07536 | 0.807284 | 5.45E-50 | -1.69E-46 |
| MS.gene053811 | MS.gene07536 | 0.835781 | 1.37E-56 | -1.69E-46 |
| MS.gene053836 | MS.gene07536 | 0.813642 | 2.31E-51 | -1.69E-46 |
| MS.gene054083 | MS.gene07536 | 0.802417 | 5.67E-49 | -1.69E-46 |
| MS.gene05414 | MS.gene07536 | 0.802027 | 6.82E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene07536 | 0.813431 | 2.57E-51 | -1.69E-46 |
| MS.gene054379 | MS.gene07536 | 0.813394 | 2.62E-51 | -1.69E-46 |
| MS.gene054467 | MS.gene07536 | 0.812337 | 4.46E-51 | -1.69E-46 |
| MS.gene054468 | MS.gene07536 | 0.877367 | 6.65E-69 | -1.69E-46 |
| MS.gene054826 | MS.gene07536 | 0.852462 | 4.54E-61 | -1.69E-46 |
| MS.gene054930 | MS.gene07536 | 0.858053 | 1.07E-62 | -1.69E-46 |
| MS.gene054942 | MS.gene07536 | 0.810292 | 1.24E-50 | -1.69E-46 |
| MS.gene054983 | MS.gene07536 | 0.805797 | 1.12E-49 | -1.69E-46 |
| MS.gene055542 | MS.gene07536 | 0.800459 | 1.43E-48 | -1.69E-46 |
| MS.gene055701 | MS.gene07536 | 0.807393 | 5.17E-50 | -1.69E-46 |
| MS.gene056506 | MS.gene07536 | 0.819743 | 9.90E-53 | -1.69E-46 |
| MS.gene056875 | MS.gene07536 | 0.805079 | 1.59E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene07536 | 0.846136 | 2.63E-59 | -1.69E-46 |
| MS.gene057194 | MS.gene07536 | 0.81067 | 1.03E-50 | -1.69E-46 |
| MS.gene05761 | MS.gene07536 | 0.834356 | 3.14E-56 | -1.69E-46 |
| MS.gene057929 | MS.gene07536 | 0.801339 | 9.44E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene07536 | 0.812485 | 4.14E-51 | -1.69E-46 |
| MS.gene058139 | MS.gene07536 | 0.810217 | 1.29E-50 | -1.69E-46 |
| MS.gene058378 | MS.gene07536 | 0.809322 | 2.00E-50 | -1.69E-46 |
| MS.gene058739 | MS.gene07536 | 0.819302 | 1.25E-52 | -1.69E-46 |
| MS.gene059128 | MS.gene07536 | 0.806339 | 8.63E-50 | -1.69E-46 |
| MS.gene060572 | MS.gene07536 | 0.815862 | 7.44E-52 | -1.69E-46 |
| MS.gene060879 | MS.gene07536 | 0.80645 | 8.18E-50 | -1.69E-46 |
| MS.gene060998 | MS.gene07536 | 0.803428 | 3.50E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene07536 | -0.854848 | 9.37E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 95 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGGAGTTGTTCTGACTTT+TGG | 0.238222 | 1.1:+58679523 | None:intergenic |
| GATTAATGAACATACATATT+TGG | 0.242714 | 1.1:+58679496 | None:intergenic |
| GAAGCCCTTGATGGAATAAT+TGG | 0.245572 | 1.1:-58679673 | MS.gene07536:CDS |
| TGGACATAGTAGTCCTTCTT+TGG | 0.254367 | 1.1:+58680543 | None:intergenic |
| CCCTCGGATATATTTGATTC+TGG | 0.259620 | 1.1:-58677558 | MS.gene07536:CDS |
| TGTCCTTTCCATCCTTAGTT+TGG | 0.271260 | 1.1:+58675908 | None:intergenic |
| GATATATTTGATTCTGGAAA+TGG | 0.285563 | 1.1:-58677552 | MS.gene07536:CDS |
| TGACTATCTGTTCCAATATA+AGG | 0.288332 | 1.1:-58676382 | MS.gene07536:intron |
| CTTGATGGAATAATTGGTTT+TGG | 0.295754 | 1.1:-58679667 | MS.gene07536:CDS |
| CTTGTACGATCTTGAGAATA+TGG | 0.302586 | 1.1:-58672640 | MS.gene07536:CDS |
| TCTCCATAAGTTATGCTATA+GGG | 0.307360 | 1.1:+58680195 | None:intergenic |
| GTCCTTTCCATCCTTAGTTT+GGG | 0.310111 | 1.1:+58675909 | None:intergenic |
| ACATATGATGGTCCGATTCC+TGG | 0.332528 | 1.1:-58680240 | MS.gene07536:CDS |
| ATGCGAGCTAATTTCAATTC+AGG | 0.348914 | 1.1:+58677366 | None:intergenic |
| GGAAAGGACATGACACTTCT+TGG | 0.353144 | 1.1:-58675895 | MS.gene07536:CDS |
| AAGTTCATACCACCTTATAT+TGG | 0.354647 | 1.1:+58676370 | None:intergenic |
| CAAATACCTTTGGAATTAGT+TGG | 0.360512 | 1.1:+58677469 | None:intergenic |
| AATATTTGCCATAGGGGAAT+TGG | 0.388793 | 1.1:-58679551 | MS.gene07536:CDS |
| TATTCCATCAAGGGCTTCTT+CGG | 0.390964 | 1.1:+58679678 | None:intergenic |
| AATGCATACATACACCGATT+TGG | 0.391207 | 1.1:+58680454 | None:intergenic |
| TAGGCTGGTGTCCGATGTAT+TGG | 0.403880 | 1.1:-58675949 | MS.gene07536:CDS |
| TGCCCCTATAGCATAACTTA+TGG | 0.404144 | 1.1:-58680198 | MS.gene07536:CDS |
| AGGTTGTATTTCACTAAACT+TGG | 0.408327 | 1.1:-58680576 | MS.gene07536:CDS |
| TCAAAATGTAGTTTGACAAC+TGG | 0.411155 | 1.1:+58676435 | None:intergenic |
| GATCTTGAGAATATGGCTAT+TGG | 0.412629 | 1.1:-58672633 | MS.gene07536:CDS |
| TATTTCACTAAACTTGGGCT+TGG | 0.419254 | 1.1:-58680570 | MS.gene07536:CDS |
| TTGAAGAATATTGAAGTTGA+TGG | 0.419885 | 1.1:-58677597 | MS.gene07536:CDS |
| TCTGAAGTATGAGATCCCTT+TGG | 0.425665 | 1.1:+58680297 | None:intergenic |
| TCTTCCGAAGAAGCCCTTGA+TGG | 0.436173 | 1.1:-58679682 | MS.gene07536:CDS |
| CTGAAGTATGAGATCCCTTT+GGG | 0.444221 | 1.1:+58680298 | None:intergenic |
| ATCTCCATAAGTTATGCTAT+AGG | 0.446865 | 1.1:+58680194 | None:intergenic |
| ATAAGTTATGCTATAGGGGC+AGG | 0.450756 | 1.1:+58680200 | None:intergenic |
| CAACTACTGGATACTATGTC+AGG | 0.454687 | 1.1:-58680164 | MS.gene07536:CDS |
| ATATATTTGATTCTGGAAAT+GGG | 0.463580 | 1.1:-58677551 | MS.gene07536:CDS |
| TTGTAACCTTGCAGTGTTGA+TGG | 0.473520 | 1.1:-58676465 | MS.gene07536:intron |
| TACTATGTCCAAGTTGATAC+AGG | 0.477388 | 1.1:-58680531 | MS.gene07536:CDS |
| TCCGCCTTACAACCAGGAAT+CGG | 0.485297 | 1.1:+58680228 | None:intergenic |
| TGGTTCCACCAATTCCCCTA+TGG | 0.487442 | 1.1:+58679543 | None:intergenic |
| GCTGTACAATCTGGCACATT+GGG | 0.492450 | 1.1:-58679709 | MS.gene07536:CDS |
| CACTGCCTTGACAATATTCG+TGG | 0.504030 | 1.1:-58679580 | MS.gene07536:CDS |
| TGTCCTACGAAAAGCCAAAT+CGG | 0.504507 | 1.1:-58680468 | MS.gene07536:CDS |
| CAAAACCAATTATTCCATCA+AGG | 0.505616 | 1.1:+58679668 | None:intergenic |
| CGCTGTACAATCTGGCACAT+TGG | 0.507679 | 1.1:-58679710 | MS.gene07536:CDS |
| ATTTGCCATAGGGGAATTGG+TGG | 0.515298 | 1.1:-58679548 | MS.gene07536:CDS |
| TGGTCCGATTCCTGGTTGTA+AGG | 0.515945 | 1.1:-58680232 | MS.gene07536:CDS |
| TAATTTCAATTCAGGCTGAC+GGG | 0.516305 | 1.1:+58677374 | None:intergenic |
| TATAGCATAACTTATGGAGA+TGG | 0.523472 | 1.1:-58680192 | MS.gene07536:CDS |
| GGTTGTATTTCACTAAACTT+GGG | 0.524940 | 1.1:-58680575 | MS.gene07536:CDS |
| GGAGATGGAAGTGCAACTAC+TGG | 0.525159 | 1.1:-58680177 | MS.gene07536:CDS |
| AGTTGGTCATAGACTATGAC+AGG | 0.528228 | 1.1:+58677486 | None:intergenic |
| AAAACCAATTATTCCATCAA+GGG | 0.529475 | 1.1:+58679669 | None:intergenic |
| TATGGAGATTTCCGTTGATC+CGG | 0.531316 | 1.1:+58680124 | None:intergenic |
| AAGGGCACAGTGATTGATAG+TGG | 0.533492 | 1.1:-58677528 | MS.gene07536:CDS |
| GGTGGTGGAATATTTGCCAT+AGG | 0.534159 | 1.1:-58679559 | MS.gene07536:CDS |
| TGGGCTTGGCTCTCCAAAGA+AGG | 0.534533 | 1.1:-58680556 | MS.gene07536:CDS |
| GTGGTGGAATATTTGCCATA+GGG | 0.535995 | 1.1:-58679558 | MS.gene07536:CDS |
| TTTGATTCTGGAAATGGGAA+GGG | 0.536848 | 1.1:-58677546 | MS.gene07536:CDS |
| GAAAAGTGTGACCCAAACTA+AGG | 0.537843 | 1.1:-58675920 | MS.gene07536:CDS |
| CTCCATAAGTTATGCTATAG+GGG | 0.541427 | 1.1:+58680196 | None:intergenic |
| GATTGATAGTGGAACAACCT+TGG | 0.548951 | 1.1:-58677517 | MS.gene07536:CDS |
| CTAATTTCAATTCAGGCTGA+CGG | 0.548990 | 1.1:+58677373 | None:intergenic |
| ATTTGATTCTGGAAATGGGA+AGG | 0.551449 | 1.1:-58677547 | MS.gene07536:CDS |
| ACAGCTTGCTGCATCTCGAA+AGG | 0.556530 | 1.1:-58679620 | MS.gene07536:CDS |
| AGTGTGACCCAAACTAAGGA+TGG | 0.559654 | 1.1:-58675916 | MS.gene07536:CDS |
| GGTGTTTCCGCCTTACAACC+AGG | 0.561933 | 1.1:+58680222 | None:intergenic |
| TAACCTTGCAGTGTTGATGG+TGG | 0.562260 | 1.1:-58676462 | MS.gene07536:intron |
| ACATACATATTTGGTACCAA+TGG | 0.562501 | 1.1:+58679505 | None:intergenic |
| TATCACTTCCTGTATCAACT+TGG | 0.567282 | 1.1:+58680523 | None:intergenic |
| AGGTGTGGCGCTGTACAATC+TGG | 0.571318 | 1.1:-58679718 | MS.gene07536:CDS |
| ATGGCGTACTTTCCAGCATA+CGG | 0.571746 | 1.1:+58677321 | None:intergenic |
| TTGAGAATATGGCTATTGGA+TGG | 0.573054 | 1.1:-58672629 | MS.gene07536:CDS |
| AAAAGTCAGAACAACTCCAT+TGG | 0.586123 | 1.1:-58679521 | MS.gene07536:CDS |
| CTTGACAATATTCGTGGTGG+TGG | 0.588390 | 1.1:-58679574 | MS.gene07536:CDS |
| TTGACTCTCTATGACCCAAA+GGG | 0.594661 | 1.1:-58680312 | MS.gene07536:CDS |
| AGGAATCGGACCATCATATG+TGG | 0.599832 | 1.1:+58680242 | None:intergenic |
| CTGGTGTCCGATGTATTGGC+TGG | 0.602129 | 1.1:-58675945 | MS.gene07536:CDS |
| AAGGACATGACACTTCTTGG+AGG | 0.602130 | 1.1:-58675892 | MS.gene07536:intron |
| GACCCAAACTAAGGATGGAA+AGG | 0.607035 | 1.1:-58675911 | MS.gene07536:CDS |
| CCAGAATCAAATATATCCGA+GGG | 0.608496 | 1.1:+58677558 | None:intergenic |
| ATTGAAATTAGCTCGCATTG+AGG | 0.611001 | 1.1:-58677361 | MS.gene07536:CDS |
| TCCAGAATCAAATATATCCG+AGG | 0.613600 | 1.1:+58677557 | None:intergenic |
| TGATGTTCTACAGCTTCCCT+CGG | 0.625997 | 1.1:-58677574 | MS.gene07536:CDS |
| CTTGACTCTCTATGACCCAA+AGG | 0.636415 | 1.1:-58680313 | MS.gene07536:CDS |
| TAAGTTATGCTATAGGGGCA+GGG | 0.637715 | 1.1:+58680201 | None:intergenic |
| CTATGACCAACTAATTCCAA+AGG | 0.638550 | 1.1:-58677475 | MS.gene07536:intron |
| TCCGATTCCTGGTTGTAAGG+CGG | 0.644021 | 1.1:-58680229 | MS.gene07536:CDS |
| CACCACCACGAATATTGTCA+AGG | 0.649946 | 1.1:+58679575 | None:intergenic |
| AACTACTGGATACTATGTCA+GGG | 0.651961 | 1.1:-58680163 | MS.gene07536:CDS |
| TGGTGGAATATTTGCCATAG+GGG | 0.652757 | 1.1:-58679557 | MS.gene07536:CDS |
| TATGACAGGAAGATAAGCCA+AGG | 0.661057 | 1.1:+58677500 | None:intergenic |
| TACAGGAAGTGATATTCTGT+GGG | 0.670376 | 1.1:-58680514 | MS.gene07536:CDS |
| ATACAGGAAGTGATATTCTG+TGG | 0.684061 | 1.1:-58680515 | MS.gene07536:CDS |
| TTGTAGGGCACATTACAATG+TGG | 0.689913 | 1.1:-58677622 | MS.gene07536:intron |
| TATTGGAACAGATAGTCATG+AGG | 0.699625 | 1.1:+58676387 | None:intergenic |
| TGCCTTGACAATATTCGTGG+TGG | 0.718049 | 1.1:-58679577 | MS.gene07536:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 58672616 | 58680596 | 58672616 | ID=MS.gene07536 |
| chr1.1 | mRNA | 58672616 | 58680596 | 58672616 | ID=MS.gene07536.t1;Parent=MS.gene07536 |
| chr1.1 | exon | 58680467 | 58680596 | 58680467 | ID=MS.gene07536.t1.exon1;Parent=MS.gene07536.t1 |
| chr1.1 | CDS | 58680467 | 58680596 | 58680467 | ID=cds.MS.gene07536.t1;Parent=MS.gene07536.t1 |
| chr1.1 | exon | 58680093 | 58680340 | 58680093 | ID=MS.gene07536.t1.exon2;Parent=MS.gene07536.t1 |
| chr1.1 | CDS | 58680093 | 58680340 | 58680093 | ID=cds.MS.gene07536.t1;Parent=MS.gene07536.t1 |
| chr1.1 | exon | 58679511 | 58679738 | 58679511 | ID=MS.gene07536.t1.exon3;Parent=MS.gene07536.t1 |
| chr1.1 | CDS | 58679511 | 58679738 | 58679511 | ID=cds.MS.gene07536.t1;Parent=MS.gene07536.t1 |
| chr1.1 | exon | 58677476 | 58677638 | 58677476 | ID=MS.gene07536.t1.exon4;Parent=MS.gene07536.t1 |
| chr1.1 | CDS | 58677476 | 58677638 | 58677476 | ID=cds.MS.gene07536.t1;Parent=MS.gene07536.t1 |
| chr1.1 | exon | 58677330 | 58677403 | 58677330 | ID=MS.gene07536.t1.exon5;Parent=MS.gene07536.t1 |
| chr1.1 | CDS | 58677330 | 58677403 | 58677330 | ID=cds.MS.gene07536.t1;Parent=MS.gene07536.t1 |
| chr1.1 | exon | 58676383 | 58676473 | 58676383 | ID=MS.gene07536.t1.exon6;Parent=MS.gene07536.t1 |
| chr1.1 | CDS | 58676383 | 58676473 | 58676383 | ID=cds.MS.gene07536.t1;Parent=MS.gene07536.t1 |
| chr1.1 | exon | 58675893 | 58675968 | 58675893 | ID=MS.gene07536.t1.exon7;Parent=MS.gene07536.t1 |
| chr1.1 | CDS | 58675893 | 58675968 | 58675893 | ID=cds.MS.gene07536.t1;Parent=MS.gene07536.t1 |
| chr1.1 | exon | 58672616 | 58672687 | 58672616 | ID=MS.gene07536.t1.exon8;Parent=MS.gene07536.t1 |
| chr1.1 | CDS | 58672616 | 58672687 | 58672616 | ID=cds.MS.gene07536.t1;Parent=MS.gene07536.t1 |
| Gene Sequence |
| Protein sequence |