Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43459.t1 | XP_013467098.1 | 90.9 | 460 | 23 | 9 | 1 | 454 | 1 | 447 | 2.50E-228 | 801.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43459.t1 | Q8L627 | 53.9 | 319 | 133 | 6 | 137 | 454 | 70 | 375 | 4.8e-87 | 323.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43459.t1 | I3S3I2 | 90.9 | 460 | 23 | 9 | 1 | 454 | 1 | 447 | 1.8e-228 | 801.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene43459 | 0.804594 | 2.00E-49 | -1.69E-46 |
| MS.gene049230 | MS.gene43459 | 0.809974 | 1.45E-50 | -1.69E-46 |
| MS.gene049378 | MS.gene43459 | 0.827414 | 1.59E-54 | -1.69E-46 |
| MS.gene049424 | MS.gene43459 | 0.815468 | 9.10E-52 | -1.69E-46 |
| MS.gene049435 | MS.gene43459 | 0.847708 | 9.75E-60 | -1.69E-46 |
| MS.gene049669 | MS.gene43459 | 0.815364 | 9.60E-52 | -1.69E-46 |
| MS.gene049877 | MS.gene43459 | 0.806968 | 6.36E-50 | -1.69E-46 |
| MS.gene050105 | MS.gene43459 | 0.801981 | 6.97E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene43459 | 0.840085 | 1.08E-57 | -1.69E-46 |
| MS.gene050227 | MS.gene43459 | 0.846422 | 2.19E-59 | -1.69E-46 |
| MS.gene050228 | MS.gene43459 | 0.853999 | 1.65E-61 | -1.69E-46 |
| MS.gene050442 | MS.gene43459 | 0.858626 | 7.24E-63 | -1.69E-46 |
| MS.gene050605 | MS.gene43459 | 0.813383 | 2.63E-51 | -1.69E-46 |
| MS.gene050623 | MS.gene43459 | -0.816106 | 6.56E-52 | -1.69E-46 |
| MS.gene050680 | MS.gene43459 | 0.834164 | 3.51E-56 | -1.69E-46 |
| MS.gene050750 | MS.gene43459 | 0.871154 | 8.48E-67 | -1.69E-46 |
| MS.gene050820 | MS.gene43459 | 0.81937 | 1.20E-52 | -1.69E-46 |
| MS.gene050953 | MS.gene43459 | 0.871353 | 7.29E-67 | -1.69E-46 |
| MS.gene050987 | MS.gene43459 | 0.815192 | 1.05E-51 | -1.69E-46 |
| MS.gene051198 | MS.gene43459 | 0.835376 | 1.74E-56 | -1.69E-46 |
| MS.gene051368 | MS.gene43459 | 0.810914 | 9.09E-51 | -1.69E-46 |
| MS.gene051370 | MS.gene43459 | 0.812275 | 4.60E-51 | -1.69E-46 |
| MS.gene051535 | MS.gene43459 | 0.800098 | 1.69E-48 | -1.69E-46 |
| MS.gene051983 | MS.gene43459 | 0.831256 | 1.85E-55 | -1.69E-46 |
| MS.gene052176 | MS.gene43459 | 0.816813 | 4.56E-52 | -1.69E-46 |
| MS.gene052190 | MS.gene43459 | 0.820107 | 8.17E-53 | -1.69E-46 |
| MS.gene052333 | MS.gene43459 | 0.841156 | 5.64E-58 | -1.69E-46 |
| MS.gene052426 | MS.gene43459 | 0.823301 | 1.49E-53 | -1.69E-46 |
| MS.gene052586 | MS.gene43459 | 0.811847 | 5.71E-51 | -1.69E-46 |
| MS.gene052867 | MS.gene43459 | 0.805292 | 1.43E-49 | -1.69E-46 |
| MS.gene052954 | MS.gene43459 | 0.82117 | 4.65E-53 | -1.69E-46 |
| MS.gene053166 | MS.gene43459 | 0.853459 | 2.36E-61 | -1.69E-46 |
| MS.gene053188 | MS.gene43459 | 0.823417 | 1.40E-53 | -1.69E-46 |
| MS.gene053201 | MS.gene43459 | 0.817447 | 3.28E-52 | -1.69E-46 |
| MS.gene053216 | MS.gene43459 | 0.824403 | 8.23E-54 | -1.69E-46 |
| MS.gene053584 | MS.gene43459 | 0.801389 | 9.21E-49 | -1.69E-46 |
| MS.gene05414 | MS.gene43459 | 0.80924 | 2.09E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene43459 | 0.842741 | 2.15E-58 | -1.69E-46 |
| MS.gene054291 | MS.gene43459 | -0.818473 | 1.92E-52 | -1.69E-46 |
| MS.gene054405 | MS.gene43459 | 0.86134 | 1.10E-63 | -1.69E-46 |
| MS.gene054468 | MS.gene43459 | 0.807756 | 4.33E-50 | -1.69E-46 |
| MS.gene054537 | MS.gene43459 | 0.808136 | 3.59E-50 | -1.69E-46 |
| MS.gene054559 | MS.gene43459 | 0.817753 | 2.80E-52 | -1.69E-46 |
| MS.gene054657 | MS.gene43459 | 0.833047 | 6.67E-56 | -1.69E-46 |
| MS.gene054930 | MS.gene43459 | 0.823186 | 1.59E-53 | -1.69E-46 |
| MS.gene05510 | MS.gene43459 | 0.857897 | 1.19E-62 | -1.69E-46 |
| MS.gene055367 | MS.gene43459 | 0.810854 | 9.37E-51 | -1.69E-46 |
| MS.gene055542 | MS.gene43459 | 0.800862 | 1.18E-48 | -1.69E-46 |
| MS.gene055623 | MS.gene43459 | 0.815861 | 7.44E-52 | -1.69E-46 |
| MS.gene055701 | MS.gene43459 | 0.858698 | 6.89E-63 | -1.69E-46 |
| MS.gene055818 | MS.gene43459 | 0.81161 | 6.42E-51 | -1.69E-46 |
| MS.gene05595 | MS.gene43459 | 0.809052 | 2.29E-50 | -1.69E-46 |
| MS.gene056173 | MS.gene43459 | 0.800439 | 1.44E-48 | -1.69E-46 |
| MS.gene056174 | MS.gene43459 | 0.807552 | 4.78E-50 | -1.69E-46 |
| MS.gene056480 | MS.gene43459 | 0.807304 | 5.40E-50 | -1.69E-46 |
| MS.gene056506 | MS.gene43459 | 0.87021 | 1.73E-66 | -1.69E-46 |
| MS.gene056776 | MS.gene43459 | 0.800162 | 1.64E-48 | -1.69E-46 |
| MS.gene056779 | MS.gene43459 | 0.803153 | 3.99E-49 | -1.69E-46 |
| MS.gene056873 | MS.gene43459 | 0.813959 | 1.97E-51 | -1.69E-46 |
| MS.gene056979 | MS.gene43459 | 0.825297 | 5.06E-54 | -1.69E-46 |
| MS.gene057026 | MS.gene43459 | 0.810105 | 1.36E-50 | -1.69E-46 |
| MS.gene057060 | MS.gene43459 | 0.825775 | 3.90E-54 | -1.69E-46 |
| MS.gene057194 | MS.gene43459 | 0.805174 | 1.52E-49 | -1.69E-46 |
| MS.gene057200 | MS.gene43459 | 0.805192 | 1.50E-49 | -1.69E-46 |
| MS.gene05761 | MS.gene43459 | 0.834276 | 3.29E-56 | -1.69E-46 |
| MS.gene057639 | MS.gene43459 | 0.807578 | 4.72E-50 | -1.69E-46 |
| MS.gene057750 | MS.gene43459 | 0.803218 | 3.87E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene43459 | 0.829234 | 5.77E-55 | -1.69E-46 |
| MS.gene058146 | MS.gene43459 | 0.822375 | 2.45E-53 | -1.69E-46 |
| MS.gene058435 | MS.gene43459 | 0.80603 | 1.00E-49 | -1.69E-46 |
| MS.gene058548 | MS.gene43459 | 0.806582 | 7.67E-50 | -1.69E-46 |
| MS.gene058595 | MS.gene43459 | 0.810598 | 1.06E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene43459 | 0.804274 | 2.34E-49 | -1.69E-46 |
| MS.gene059128 | MS.gene43459 | 0.83007 | 3.61E-55 | -1.69E-46 |
| MS.gene059161 | MS.gene43459 | 0.822002 | 2.99E-53 | -1.69E-46 |
| MS.gene060011 | MS.gene43459 | 0.830677 | 2.57E-55 | -1.69E-46 |
| MS.gene060137 | MS.gene43459 | -0.809068 | 2.27E-50 | -1.69E-46 |
| MS.gene060297 | MS.gene43459 | 0.824267 | 8.86E-54 | -1.69E-46 |
| MS.gene060310 | MS.gene43459 | 0.827074 | 1.91E-54 | -1.69E-46 |
| MS.gene060322 | MS.gene43459 | 0.806506 | 7.96E-50 | -1.69E-46 |
| MS.gene060553 | MS.gene43459 | 0.805435 | 1.34E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene43459 | 0.817024 | 4.09E-52 | -1.69E-46 |
| MS.gene060634 | MS.gene43459 | -0.820021 | 8.55E-53 | -1.69E-46 |
| MS.gene060683 | MS.gene43459 | 0.838704 | 2.46E-57 | -1.69E-46 |
| MS.gene060685 | MS.gene43459 | 0.834549 | 2.81E-56 | -1.69E-46 |
| MS.gene060802 | MS.gene43459 | 0.815354 | 9.65E-52 | -1.69E-46 |
| MS.gene060803 | MS.gene43459 | 0.808131 | 3.60E-50 | -1.69E-46 |
| MS.gene060879 | MS.gene43459 | 0.817273 | 3.59E-52 | -1.69E-46 |
| MS.gene060918 | MS.gene43459 | 0.827697 | 1.36E-54 | -1.69E-46 |
| MS.gene060998 | MS.gene43459 | 0.816529 | 5.28E-52 | -1.69E-46 |
| MS.gene061040 | MS.gene43459 | -0.809724 | 1.64E-50 | -1.69E-46 |
| MS.gene061114 | MS.gene43459 | -0.813885 | 2.04E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43459.t1 | MTR_1g043000 | 90.870 | 460 | 23 | 9 | 1 | 454 | 1 | 447 | 0.0 | 831 |
| MS.gene43459.t1 | MTR_4g134340 | 88.571 | 455 | 34 | 6 | 1 | 454 | 1 | 438 | 0.0 | 816 |
| MS.gene43459.t1 | MTR_4g134340 | 87.692 | 455 | 31 | 7 | 1 | 454 | 1 | 431 | 0.0 | 802 |
| MS.gene43459.t1 | MTR_4g134340 | 86.150 | 361 | 32 | 6 | 1 | 360 | 1 | 344 | 0.0 | 612 |
| MS.gene43459.t1 | MTR_4g064230 | 85.215 | 372 | 27 | 10 | 1 | 367 | 1 | 349 | 0.0 | 604 |
| MS.gene43459.t1 | MTR_8g042940 | 68.834 | 446 | 101 | 8 | 17 | 454 | 8 | 423 | 0.0 | 594 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43459.t1 | AT1G28560 | 46.272 | 456 | 206 | 10 | 23 | 454 | 22 | 462 | 2.68e-127 | 377 |
| MS.gene43459.t1 | AT1G28560 | 51.020 | 343 | 149 | 7 | 113 | 454 | 51 | 375 | 3.63e-111 | 333 |
| MS.gene43459.t1 | AT1G28560 | 51.020 | 343 | 149 | 7 | 113 | 454 | 62 | 386 | 5.29e-111 | 333 |
Find 99 sgRNAs with CRISPR-Local
Find 331 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGGGAATATATTATAAA+TGG | 0.182807 | 8.4:+450145 | MS.gene43459:CDS |
| GAAACAACAACAAGTCTTTC+AGG | 0.206736 | 8.4:+448994 | MS.gene43459:CDS |
| ATATGTCTGGCCCAATTGTT+AGG | 0.268431 | 8.4:+448831 | MS.gene43459:CDS |
| AGACATATTGGAGACGTAAA+TGG | 0.290839 | 8.4:-448816 | None:intergenic |
| CGATGAATTGGAATTGGAAT+TGG | 0.317249 | 8.4:+448742 | MS.gene43459:CDS |
| GGTCAACACAATGGCTCTTC+AGG | 0.336128 | 8.4:+449600 | MS.gene43459:intron |
| ACCCAAGAGCTGTTAGTTCT+TGG | 0.341773 | 8.4:+449851 | MS.gene43459:CDS |
| CTTGCTTTAGTCCTGATTCC+AGG | 0.346091 | 8.4:+449407 | MS.gene43459:intron |
| TCAAAGCCATGTCCATTAAC+TGG | 0.348465 | 8.4:-448973 | None:intergenic |
| AATAATGGATGACGATGAAT+TGG | 0.349436 | 8.4:+448730 | None:intergenic |
| AACAATTGGGCCAGACATAT+TGG | 0.350363 | 8.4:-448828 | None:intergenic |
| TTGGAATTGGAATGTTCAAT+TGG | 0.350971 | 8.4:+448755 | MS.gene43459:CDS |
| AATGGGAATATATTATAAAT+GGG | 0.355592 | 8.4:+450146 | MS.gene43459:CDS |
| TTTCTTCTGTGCCTCCTCCT+TGG | 0.362628 | 8.4:-450125 | None:intergenic |
| ATGCCGATGATGTACAGAAT+TGG | 0.370973 | 8.4:+452654 | MS.gene43459:CDS |
| TTCAGTTGAAAAGTGACAAT+TGG | 0.371285 | 8.4:-452686 | None:intergenic |
| CTCAAAGGATGATGTCTCTT+AGG | 0.383507 | 8.4:+449467 | MS.gene43459:CDS |
| AACTCTGCTGCTGCAGCATT+AGG | 0.385029 | 8.4:-449046 | None:intergenic |
| GCTGGCCAACATGACCCTTC+TGG | 0.386308 | 8.4:+449938 | MS.gene43459:CDS |
| AGGAGGAGGCACAGAAGAAA+TGG | 0.394153 | 8.4:+450128 | MS.gene43459:CDS |
| TTTACAATTACTATCAAGAA+TGG | 0.394641 | 8.4:-449216 | None:intergenic |
| GGATGACGATGAATTGGAAT+TGG | 0.402520 | 8.4:+448736 | MS.gene43459:CDS |
| CACCAAGAACTAACAGCTCT+TGG | 0.403372 | 8.4:-449853 | None:intergenic |
| AAAAGAGGAACCCTAACAAT+TGG | 0.405666 | 8.4:-448842 | None:intergenic |
| GATTGATTGATCCTGGAATC+AGG | 0.410653 | 8.4:-449418 | None:intergenic |
| GTCAGAATAACAAGCTCTTC+AGG | 0.418838 | 8.4:+449168 | MS.gene43459:CDS |
| TGATAGTAATTGTAAAGAAA+AGG | 0.442398 | 8.4:+449223 | MS.gene43459:CDS |
| TCATGATCATGATTCGAATC+AGG | 0.447002 | 8.4:-448914 | None:intergenic |
| TGGATACCTTTATTGTCATC+AGG | 0.448523 | 8.4:+450288 | MS.gene43459:CDS |
| AAACAACAACAAGTCTTTCA+GGG | 0.453600 | 8.4:+448995 | MS.gene43459:CDS |
| AATCAGGAGGTAATTCAGAT+TGG | 0.455691 | 8.4:-448898 | None:intergenic |
| CCAGAACTTATCTGTATTGA+GGG | 0.458583 | 8.4:+449877 | MS.gene43459:CDS |
| TATCTCGTATTACTAAGGTA+TGG | 0.460471 | 8.4:-452619 | None:intergenic |
| AAAGTACCTGATGACAATAA+AGG | 0.462826 | 8.4:-450294 | None:intergenic |
| CCCTCAATACAGATAAGTTC+TGG | 0.465397 | 8.4:-449877 | None:intergenic |
| CATCCTCTGCTAGGTGAAGA+AGG | 0.470985 | 8.4:-452820 | None:intergenic |
| GTTGGCAGATTGATTGATCC+TGG | 0.476704 | 8.4:-449425 | None:intergenic |
| AGGTCACTGTGGATGACAAA+TGG | 0.479331 | 8.4:+452756 | MS.gene43459:CDS |
| AACCTTTGTGGCAGAACTTG+TGG | 0.482472 | 8.4:-449491 | None:intergenic |
| TTACAATTACTATCAAGAAT+GGG | 0.489599 | 8.4:-449215 | None:intergenic |
| CTTCTTCACCTAGCAGAGGA+TGG | 0.493676 | 8.4:+452821 | MS.gene43459:CDS |
| GACATATTGGAGACGTAAAT+GGG | 0.500992 | 8.4:-448815 | None:intergenic |
| CCTCATATCTCGTATTACTA+AGG | 0.501935 | 8.4:-452624 | None:intergenic |
| CAAGAGCTGTTAGTTCTTGG+TGG | 0.503983 | 8.4:+449854 | MS.gene43459:CDS |
| TGCCGATGATGTACAGAATT+GGG | 0.506290 | 8.4:+452655 | MS.gene43459:CDS |
| AATGGGTTTATTTGTTCGAC+GGG | 0.510441 | 8.4:-449198 | None:intergenic |
| GCCAGAACTTATCTGTATTG+AGG | 0.512945 | 8.4:+449876 | MS.gene43459:CDS |
| ACCAAGAACTAACAGCTCTT+GGG | 0.513479 | 8.4:-449852 | None:intergenic |
| AAAGAGGAACCCTAACAATT+GGG | 0.516740 | 8.4:-448841 | None:intergenic |
| CCCCTCGGAATTGAGATTGA+AGG | 0.518085 | 8.4:-448788 | None:intergenic |
| AAGCCAATCGAGTATGGGTC+TGG | 0.519776 | 8.4:-450095 | None:intergenic |
| TTCCCTTCTTCACCTAGCAG+AGG | 0.521159 | 8.4:+452817 | MS.gene43459:CDS |
| TATGTCTGGCCCAATTGTTA+GGG | 0.523102 | 8.4:+448832 | MS.gene43459:CDS |
| CCTTAGTAATACGAGATATG+AGG | 0.530354 | 8.4:+452624 | MS.gene43459:CDS |
| ATTTACGTCTCCAATATGTC+TGG | 0.531439 | 8.4:+448818 | MS.gene43459:CDS |
| TCAGGAGCACATACCTGTGC+AGG | 0.532269 | 8.4:+449618 | MS.gene43459:CDS |
| TGACCAGACCCATACTCGAT+TGG | 0.536263 | 8.4:+450092 | MS.gene43459:CDS |
| ACACAAGCAGGAGGAAGATA+AGG | 0.539279 | 8.4:+449268 | MS.gene43459:CDS |
| ATCTCGTATTACTAAGGTAT+GGG | 0.540723 | 8.4:-452618 | None:intergenic |
| AGACTAACAACAATTAATCA+TGG | 0.540971 | 8.4:-452883 | None:intergenic |
| TTGTAAAGAAAAGGTGGAGG+AGG | 0.547523 | 8.4:+449232 | MS.gene43459:CDS |
| GAATGGGTTTATTTGTTCGA+CGG | 0.551185 | 8.4:-449199 | None:intergenic |
| ACGTAAATGGGTCCACCCCT+CGG | 0.551378 | 8.4:-448803 | None:intergenic |
| GGAGGAGGCACAGAAGAAAT+GGG | 0.551959 | 8.4:+450129 | MS.gene43459:CDS |
| CAAAATATTCAGAGCTACAA+AGG | 0.552654 | 8.4:+452736 | MS.gene43459:CDS |
| GATCAATTGCTCAACGGACC+AGG | 0.552708 | 8.4:+449904 | MS.gene43459:CDS |
| AGAATTTAGGAGAACCTTTG+TGG | 0.559405 | 8.4:-449503 | None:intergenic |
| ATGGAGAGCCATCCTCTGCT+AGG | 0.564427 | 8.4:-452829 | None:intergenic |
| TAGTAATTGTAAAGAAAAGG+TGG | 0.567221 | 8.4:+449226 | MS.gene43459:CDS |
| CTGGTCAAATCAATAGCAGA+TGG | 0.567575 | 8.4:-450076 | None:intergenic |
| TGTCAGAATCAAACACAAGC+AGG | 0.569616 | 8.4:+449256 | MS.gene43459:CDS |
| TCCTTCAATCTCAATTCCGA+GGG | 0.576834 | 8.4:+448787 | MS.gene43459:CDS |
| TCAATCTCAATTCCGAGGGG+TGG | 0.580163 | 8.4:+448791 | MS.gene43459:CDS |
| CAAAATCAATCAAAACTCAA+AGG | 0.581709 | 8.4:+449452 | MS.gene43459:CDS |
| TCAATTAGAAAATAACCAGA+AGG | 0.582127 | 8.4:-449953 | None:intergenic |
| TCTGCTGCTGCAGCATTAGG+AGG | 0.582300 | 8.4:-449043 | None:intergenic |
| ATGGGAATATATTATAAATG+GGG | 0.585026 | 8.4:+450147 | MS.gene43459:CDS |
| AGCCCAATTCTGTACATCAT+CGG | 0.585350 | 8.4:-452657 | None:intergenic |
| ATCCTTCAATCTCAATTCCG+AGG | 0.585910 | 8.4:+448786 | MS.gene43459:CDS |
| AATAACCAGAAGGGTCATGT+TGG | 0.592815 | 8.4:-449943 | None:intergenic |
| ATAATCATATTCTATGAAGT+CGG | 0.597290 | 8.4:-452858 | None:intergenic |
| ATCCTCTGCTAGGTGAAGAA+GGG | 0.601005 | 8.4:-452819 | None:intergenic |
| ACAACTTCTGAATCCTGCAC+AGG | 0.605667 | 8.4:-449631 | None:intergenic |
| GCTTCAAAACTCCAAGGAGG+AGG | 0.606372 | 8.4:+450114 | MS.gene43459:CDS |
| GTCCACAAGTTCTGCCACAA+AGG | 0.606734 | 8.4:+449489 | MS.gene43459:CDS |
| CGATTGGCTTCAAAACTCCA+AGG | 0.623497 | 8.4:+450108 | MS.gene43459:CDS |
| TGAGGACCAGTTAATGGACA+TGG | 0.631627 | 8.4:+448967 | MS.gene43459:CDS |
| TAATTGTAAAGAAAAGGTGG+AGG | 0.637738 | 8.4:+449229 | MS.gene43459:CDS |
| TCTATGAAGTCGGTATACGA+TGG | 0.646588 | 8.4:-452848 | None:intergenic |
| TGTTTCACAGGTCAACACAA+TGG | 0.647779 | 8.4:+449591 | MS.gene43459:intron |
| TGATCATGATTCGAATCAGG+AGG | 0.661526 | 8.4:-448911 | None:intergenic |
| ATCTCAAAAGATGCAAAACG+AGG | 0.663023 | 8.4:-450223 | None:intergenic |
| AAAACAAAAGGCAATTGTCG+GGG | 0.664942 | 8.4:+450180 | MS.gene43459:CDS |
| CAGAATCAAACACAAGCAGG+AGG | 0.676879 | 8.4:+449259 | MS.gene43459:CDS |
| CAATTAGAAAATAACCAGAA+GGG | 0.677062 | 8.4:-449952 | None:intergenic |
| GGACAAGATCAATTGCTCAA+CGG | 0.684391 | 8.4:+449898 | MS.gene43459:CDS |
| CAGAGCTACAAAGGTCACTG+TGG | 0.721614 | 8.4:+452745 | MS.gene43459:CDS |
| CCTTCAATCTCAATTCCGAG+GGG | 0.754073 | 8.4:+448788 | MS.gene43459:CDS |
| TTGGCTTCAAAACTCCAAGG+AGG | 0.756414 | 8.4:+450111 | MS.gene43459:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGCAAAAAATTAAAAAAA+TGG | - | chr8.4:450361-450380 | None:intergenic | 10.0% |
| !! | AATAATAATAATGAAAAAAG+AGG | - | chr8.4:449087-449106 | None:intergenic | 10.0% |
| !! | ATAATAATAATGAAAAAAGA+GGG | - | chr8.4:449086-449105 | None:intergenic | 10.0% |
| !! | TAAGAAAACAATTATAAATT+TGG | - | chr8.4:452545-452564 | None:intergenic | 10.0% |
| !!! | AATTATTATTTTGATTATGT+AGG | - | chr8.4:449736-449755 | None:intergenic | 10.0% |
| !!! | CTTTATTTTTCTTTAATTTT+GGG | + | chr8.4:450842-450861 | MS.gene43459:intron | 10.0% |
| !!! | TCTTTATTTTTCTTTAATTT+TGG | + | chr8.4:450841-450860 | MS.gene43459:intron | 10.0% |
| !!! | TTAATTTTTTGCTTTAAATT+TGG | + | chr8.4:450366-450385 | MS.gene43459:intron | 10.0% |
| !!! | TTTATTTTTCTTTAATTTTG+GGG | + | chr8.4:450843-450862 | MS.gene43459:intron | 10.0% |
| !! | AAATGGGAATATATTATAAA+TGG | + | chr8.4:450145-450164 | MS.gene43459:CDS | 15.0% |
| !! | AAATTGTATTATTGAATGAT+AGG | - | chr8.4:452357-452376 | None:intergenic | 15.0% |
| !! | AATGGGAATATATTATAAAT+GGG | + | chr8.4:450146-450165 | MS.gene43459:CDS | 15.0% |
| !! | ATGAAAAATAAACAAATATG+TGG | - | chr8.4:452388-452407 | None:intergenic | 15.0% |
| !!! | ATAATTGTTTTCTTAGAAAT+TGG | + | chr8.4:452550-452569 | MS.gene43459:intron | 15.0% |
| !!! | TCTCCTTTTAATTTATATAT+TGG | - | chr8.4:452446-452465 | None:intergenic | 15.0% |
| !!! | TTATTTTTCTTTAATTTTGG+GGG | + | chr8.4:450844-450863 | MS.gene43459:intron | 15.0% |
| !!! | TTCATTTTCAAAATGAATTT+TGG | + | chr8.4:449759-449778 | MS.gene43459:intron | 15.0% |
| !!! | TTTAAAGCTTCAATTAATTA+AGG | + | chr8.4:451350-451369 | MS.gene43459:intron | 15.0% |
| !!! | TTTCTTTTTCTTTTTCTTTT+GGG | + | chr8.4:449825-449844 | MS.gene43459:intron | 15.0% |
| !!! | TTTTCTTTTTCTTTTTCTTT+TGG | + | chr8.4:449824-449843 | MS.gene43459:intron | 15.0% |
| !! | AAAAAAAAATTGGGAAACTT+TGG | + | chr8.4:450869-450888 | MS.gene43459:intron | 20.0% |
| !! | AGTAGATTTGATGTATTATT+TGG | - | chr8.4:451763-451782 | None:intergenic | 20.0% |
| !! | ATAATCATATTCTATGAAGT+CGG | - | chr8.4:452861-452880 | None:intergenic | 20.0% |
| !! | ATCATTCATTAATTGATTAC+TGG | + | chr8.4:449128-449147 | MS.gene43459:intron | 20.0% |
| !! | ATGGGAATATATTATAAATG+GGG | + | chr8.4:450147-450166 | MS.gene43459:CDS | 20.0% |
| !! | ATTCATCACAAAAATAACAA+GGG | - | chr8.4:452793-452812 | None:intergenic | 20.0% |
| !! | CATGAAAATGAATTTAATTG+AGG | + | chr8.4:451297-451316 | MS.gene43459:intron | 20.0% |
| !! | TGATAGTAATTGTAAAGAAA+AGG | + | chr8.4:449223-449242 | MS.gene43459:CDS | 20.0% |
| !! | TGGCCAATATATAAATTAAA+AGG | + | chr8.4:452440-452459 | MS.gene43459:intron | 20.0% |
| !! | TTACAATTACTATCAAGAAT+GGG | - | chr8.4:449218-449237 | None:intergenic | 20.0% |
| !! | TTTACAATTACTATCAAGAA+TGG | - | chr8.4:449219-449238 | None:intergenic | 20.0% |
| !!! | AACATTGATGATATTCTAAA+CGG | + | chr8.4:451321-451340 | MS.gene43459:intron | 20.0% |
| !!! | AAGATACATTTTTGTGATTT+AGG | + | chr8.4:450250-450269 | MS.gene43459:CDS | 20.0% |
| !!! | ATTTACCATAATTTTCGAAA+AGG | + | chr8.4:449667-449686 | MS.gene43459:CDS | 20.0% |
| !!! | ATTTTTGTGATTTAGGTTTT+CGG | + | chr8.4:450257-450276 | MS.gene43459:CDS | 20.0% |
| !!! | CTCAATTAAATTCATTTTCA+TGG | - | chr8.4:451299-451318 | None:intergenic | 20.0% |
| !!! | TATTAAACCATGTTGTTTAA+AGG | - | chr8.4:450690-450709 | None:intergenic | 20.0% |
| !!! | TTTGATTGATTTTGATTTGT+TGG | - | chr8.4:449446-449465 | None:intergenic | 20.0% |
| ! | AAAAAAAAGTCACTTCACTA+TGG | - | chr8.4:451915-451934 | None:intergenic | 25.0% |
| ! | AAAGATAAGGAATATGAAGA+TGG | - | chr8.4:449553-449572 | None:intergenic | 25.0% |
| ! | AAGAAAAAGAAAAAGAACAG+AGG | - | chr8.4:449817-449836 | None:intergenic | 25.0% |
| ! | AAGAAAAATAAAGACATGCA+AGG | - | chr8.4:450835-450854 | None:intergenic | 25.0% |
| ! | AAGAGAGATTAAAAAACAGT+GGG | + | chr8.4:451124-451143 | MS.gene43459:intron | 25.0% |
| ! | AAGTAAAAAATGCGAAACAT+TGG | - | chr8.4:450588-450607 | None:intergenic | 25.0% |
| ! | AAGTGCTTACTATTATTGAA+AGG | - | chr8.4:451706-451725 | None:intergenic | 25.0% |
| ! | AATATGAAGATGGAAAAAAG+AGG | - | chr8.4:449543-449562 | None:intergenic | 25.0% |
| ! | ACAAGTATCAATTGATAGAA+AGG | - | chr8.4:451231-451250 | None:intergenic | 25.0% |
| ! | ATTTATATATTGGCCAATGA+TGG | - | chr8.4:452436-452455 | None:intergenic | 25.0% |
| ! | CAAAATCAATCAAAACTCAA+AGG | + | chr8.4:449452-449471 | MS.gene43459:CDS | 25.0% |
| ! | CAAGACTTATGACTAATATA+TGG | - | chr8.4:450924-450943 | None:intergenic | 25.0% |
| ! | CAAGTATCAATTGATAGAAA+GGG | - | chr8.4:451230-451249 | None:intergenic | 25.0% |
| ! | CAATTAGAAAATAACCAGAA+GGG | - | chr8.4:449955-449974 | None:intergenic | 25.0% |
| ! | CATTAATTGATTACTGGATT+TGG | + | chr8.4:449134-449153 | MS.gene43459:intron | 25.0% |
| ! | CATTCATCACAAAAATAACA+AGG | - | chr8.4:452794-452813 | None:intergenic | 25.0% |
| ! | CTTATGACTAATATATGGAA+AGG | - | chr8.4:450919-450938 | None:intergenic | 25.0% |
| ! | GCATTGTACTATTGTAAAAT+AGG | - | chr8.4:450448-450467 | None:intergenic | 25.0% |
| ! | GTAATGCATAGTAAGAATTT+AGG | - | chr8.4:449519-449538 | None:intergenic | 25.0% |
| ! | TAGTAATTGTAAAGAAAAGG+TGG | + | chr8.4:449226-449245 | MS.gene43459:CDS | 25.0% |
| ! | TATCATCAAAGTTAACATGT+AGG | + | chr8.4:449790-449809 | MS.gene43459:intron | 25.0% |
| ! | TATCTAACTGCAAAATTCTT+AGG | - | chr8.4:452246-452265 | None:intergenic | 25.0% |
| ! | TCAATTAGAAAATAACCAGA+AGG | - | chr8.4:449956-449975 | None:intergenic | 25.0% |
| ! | TTGGGGGTTAAAAAAAAATT+GGG | + | chr8.4:450860-450879 | MS.gene43459:intron | 25.0% |
| ! | TTGTATTATTGAATGATAGG+TGG | - | chr8.4:452354-452373 | None:intergenic | 25.0% |
| ! | TTTGGGGGTTAAAAAAAAAT+TGG | + | chr8.4:450859-450878 | MS.gene43459:intron | 25.0% |
| !! | ATTTGATGAGAGATTTTTGT+AGG | + | chr8.4:451669-451688 | MS.gene43459:intron | 25.0% |
| !! | TACTTTCTTTTATATGTCAC+AGG | + | chr8.4:450311-450330 | MS.gene43459:intron | 25.0% |
| !! | TGATCTTAAAGTTTTTACTG+AGG | + | chr8.4:448949-448968 | MS.gene43459:CDS | 25.0% |
| !! | TTTGATGAGAGATTTTTGTA+GGG | + | chr8.4:451670-451689 | MS.gene43459:intron | 25.0% |
| !!! | AAGCTTTAAAAAAATTCCTG+TGG | - | chr8.4:451402-451421 | None:intergenic | 25.0% |
| !!! | ATGTATTTTACACTGATTTG+AGG | + | chr8.4:450050-450069 | MS.gene43459:CDS | 25.0% |
| !!! | ATGTTCTTTAAGACATTGTT+GGG | + | chr8.4:450756-450775 | MS.gene43459:intron | 25.0% |
| !!! | GAAGTGACTTTTTTTTGAAT+CGG | + | chr8.4:451919-451938 | MS.gene43459:intron | 25.0% |
| !!! | TAATCTTTTTTCTGAGATTG+AGG | + | chr8.4:451977-451996 | MS.gene43459:intron | 25.0% |
| !!! | TGTATTTTACACTGATTTGA+GGG | + | chr8.4:450051-450070 | MS.gene43459:CDS | 25.0% |
| !!! | TGTTAGAATATGTTTTGAGA+GGG | - | chr8.4:451004-451023 | None:intergenic | 25.0% |
| !!! | TTATTTTGATTATGTAGGCA+TGG | - | chr8.4:449731-449750 | None:intergenic | 25.0% |
| !!! | TTCTGGTTATTTTCTAATTG+AGG | + | chr8.4:449955-449974 | MS.gene43459:CDS | 25.0% |
| !!! | TTTTCATTGCTTCTGAAAAT+TGG | + | chr8.4:452401-452420 | MS.gene43459:intron | 25.0% |
| AAAAAATTGGGAAACTTTGG+AGG | + | chr8.4:450872-450891 | MS.gene43459:intron | 30.0% | |
| AAAAACAAAAGGCAATTGTC+GGG | + | chr8.4:450179-450198 | MS.gene43459:CDS | 30.0% | |
| AAAAATTGGGAAACTTTGGA+GGG | + | chr8.4:450873-450892 | MS.gene43459:intron | 30.0% | |
| AAAATAAAGACATGCAAGGT+AGG | - | chr8.4:450831-450850 | None:intergenic | 30.0% | |
| AAACAACAACAAGTCTTTCA+GGG | + | chr8.4:448995-449014 | MS.gene43459:CDS | 30.0% | |
| AAATAAAGACATGCAAGGTA+GGG | - | chr8.4:450830-450849 | None:intergenic | 30.0% | |
| AAGAGAAAAAGAGGAGAAAT+GGG | - | chr8.4:451737-451756 | None:intergenic | 30.0% | |
| ACATATTCTAACACTGTGTT+TGG | + | chr8.4:451011-451030 | MS.gene43459:intron | 30.0% | |
| ATCTCGTATTACTAAGGTAT+GGG | - | chr8.4:452621-452640 | None:intergenic | 30.0% | |
| ATTGATAGAAAGGGCAAAAT+TGG | - | chr8.4:451221-451240 | None:intergenic | 30.0% | |
| ATTGGTTACACCAAAATTGA+TGG | - | chr8.4:450570-450589 | None:intergenic | 30.0% | |
| ATTTGGTAGAAGAGAAAAAG+AGG | - | chr8.4:451746-451765 | None:intergenic | 30.0% | |
| CAAAAACAAAAGGCAATTGT+CGG | + | chr8.4:450178-450197 | MS.gene43459:CDS | 30.0% | |
| CAAAATATTCAGAGCTACAA+AGG | + | chr8.4:452736-452755 | MS.gene43459:CDS | 30.0% | |
| CTTCTTCTTTAATGTTTCAC+AGG | + | chr8.4:449579-449598 | MS.gene43459:intron | 30.0% | |
| GAAGAAGAAGAAGAAAGATA+AGG | - | chr8.4:449566-449585 | None:intergenic | 30.0% | |
| GAAGAGAGATTAAAAAACAG+TGG | + | chr8.4:451123-451142 | MS.gene43459:intron | 30.0% | |
| TAATTGTAAAGAAAAGGTGG+AGG | + | chr8.4:449229-449248 | MS.gene43459:CDS | 30.0% | |
| TAGAAATTGGATCTTTAACG+CGG | + | chr8.4:452563-452582 | MS.gene43459:intron | 30.0% | |
| TATCTCGTATTACTAAGGTA+TGG | - | chr8.4:452622-452641 | None:intergenic | 30.0% | |
| TATTGAATGATAGGTGGAAT+TGG | - | chr8.4:452348-452367 | None:intergenic | 30.0% | |
| TGCTTATGAAATTTGTCTCA+TGG | + | chr8.4:450392-450411 | MS.gene43459:intron | 30.0% | |
| TGTTTGATGCAATGATAGAA+TGG | + | chr8.4:450498-450517 | MS.gene43459:intron | 30.0% | |
| TGTTTGGTTGAAGAGAAATA+AGG | + | chr8.4:451027-451046 | MS.gene43459:intron | 30.0% | |
| TTAACATAGTCACTTCACTA+TGG | - | chr8.4:451945-451964 | None:intergenic | 30.0% | |
| TTCAGTTGAAAAGTGACAAT+TGG | - | chr8.4:452689-452708 | None:intergenic | 30.0% | |
| TTCCTTATACTATGGACAAA+CGG | - | chr8.4:452199-452218 | None:intergenic | 30.0% | |
| TTGGAATTGGAATGTTCAAT+TGG | + | chr8.4:448755-448774 | MS.gene43459:CDS | 30.0% | |
| TTGTCTCATGGTAATTGAAA+GGG | + | chr8.4:450404-450423 | MS.gene43459:intron | 30.0% | |
| TTTGTCTCATGGTAATTGAA+AGG | + | chr8.4:450403-450422 | MS.gene43459:intron | 30.0% | |
| ! | AAAGTACCTGATGACAATAA+AGG | - | chr8.4:450297-450316 | None:intergenic | 30.0% |
| ! | AAGATACGTTTTCAGAAATG+CGG | + | chr8.4:452707-452726 | MS.gene43459:CDS | 30.0% |
| ! | GATAGTAGTTTTCTCTTGTT+TGG | + | chr8.4:451084-451103 | MS.gene43459:intron | 30.0% |
| ! | TCCCATTTCTTCTCTATTTT+GGG | - | chr8.4:451172-451191 | None:intergenic | 30.0% |
| ! | TGACACCTTTTCGAAAATTA+TGG | - | chr8.4:449675-449694 | None:intergenic | 30.0% |
| ! | TTGATGAGAGATTTTTGTAG+GGG | + | chr8.4:451671-451690 | MS.gene43459:intron | 30.0% |
| !! | CATGTTCTTTAAGACATTGT+TGG | + | chr8.4:450755-450774 | MS.gene43459:intron | 30.0% |
| !! | GTGTTAGAATATGTTTTGAG+AGG | - | chr8.4:451005-451024 | None:intergenic | 30.0% |
| !! | TTGTTTGGTTCCATCAATTT+TGG | + | chr8.4:450557-450576 | MS.gene43459:intron | 30.0% |
| !!! | CACTATGGCTACTTTTTTTA+TGG | - | chr8.4:451900-451919 | None:intergenic | 30.0% |
| !!! | GAATACCTTTTTTTTGGCAT+TGG | - | chr8.4:449704-449723 | None:intergenic | 30.0% |
| !!! | GGCATTGAATACCTTTTTTT+TGG | - | chr8.4:449710-449729 | None:intergenic | 30.0% |
| !!! | GTTAGAATATGTTTTGAGAG+GGG | - | chr8.4:451003-451022 | None:intergenic | 30.0% |
| !!! | GTTTGGAAGTGTTTTTAGAT+TGG | - | chr8.4:450956-450975 | None:intergenic | 30.0% |
| !!! | TTAGAATATGTTTTGAGAGG+GGG | - | chr8.4:451002-451021 | None:intergenic | 30.0% |
| AAAACAAAAGGCAATTGTCG+GGG | + | chr8.4:450180-450199 | MS.gene43459:CDS | 35.0% | |
| AAAACACTTCCAAACCTTGT+TGG | + | chr8.4:450961-450980 | MS.gene43459:intron | 35.0% | |
| AAAAGAGGAACCCTAACAAT+TGG | - | chr8.4:448845-448864 | None:intergenic | 35.0% | |
| AAACACTTCCAAACCTTGTT+GGG | + | chr8.4:450962-450981 | MS.gene43459:intron | 35.0% | |
| AAAGAGGAACCCTAACAATT+GGG | - | chr8.4:448844-448863 | None:intergenic | 35.0% | |
| AAATACATCCTGCAAGAAAC+TGG | - | chr8.4:450038-450057 | None:intergenic | 35.0% | |
| AACCGTTTGTCCATAGTATA+AGG | + | chr8.4:452194-452213 | MS.gene43459:intron | 35.0% | |
| AATAAAGACATGCAAGGTAG+GGG | - | chr8.4:450829-450848 | None:intergenic | 35.0% | |
| AATAGTGATCTCGTTACAAG+AGG | - | chr8.4:449996-450015 | None:intergenic | 35.0% | |
| AATCAGGACTAAAGCAAGAT+AGG | - | chr8.4:449405-449424 | None:intergenic | 35.0% | |
| AATCAGGAGGTAATTCAGAT+TGG | - | chr8.4:448901-448920 | None:intergenic | 35.0% | |
| AGAAGTGAATCCTGAAAAAG+AGG | - | chr8.4:448860-448879 | None:intergenic | 35.0% | |
| AGAATTTAGGAGAACCTTTG+TGG | - | chr8.4:449506-449525 | None:intergenic | 35.0% | |
| AGACATATTGGAGACGTAAA+TGG | - | chr8.4:448819-448838 | None:intergenic | 35.0% | |
| AGACATTGTTGGGAAGTTAT+AGG | + | chr8.4:450766-450785 | MS.gene43459:intron | 35.0% | |
| AGAGAAAAAGAGGAGAAATG+GGG | - | chr8.4:451736-451755 | None:intergenic | 35.0% | |
| AGCACTACCTTTAAACAACA+TGG | + | chr8.4:450680-450699 | MS.gene43459:intron | 35.0% | |
| AGCACTAGCAAACTTGAAAA+GGG | + | chr8.4:452476-452495 | MS.gene43459:intron | 35.0% | |
| AGTAAGCAATAGCTTCCTAT+AGG | + | chr8.4:452271-452290 | MS.gene43459:intron | 35.0% | |
| AGTATAAGGAATGAAGACGT+GGG | + | chr8.4:452208-452227 | MS.gene43459:intron | 35.0% | |
| ATAGTGATCTCGTTACAAGA+GGG | - | chr8.4:449995-450014 | None:intergenic | 35.0% | |
| ATCTCAAAAGATGCAAAACG+AGG | - | chr8.4:450226-450245 | None:intergenic | 35.0% | |
| ATGGTCTCATTCTTTCACTA+TGG | - | chr8.4:451881-451900 | None:intergenic | 35.0% | |
| ATTTACGTCTCCAATATGTC+TGG | + | chr8.4:448818-448837 | MS.gene43459:CDS | 35.0% | |
| CAAAAATAACAAGGGTTGTC+TGG | - | chr8.4:452785-452804 | None:intergenic | 35.0% | |
| CCAGAACTTATCTGTATTGA+GGG | + | chr8.4:449877-449896 | MS.gene43459:CDS | 35.0% | |
| CCCCAAAATAGAGAAGAAAT+GGG | + | chr8.4:451168-451187 | MS.gene43459:intron | 35.0% | |
| CCTCATATCTCGTATTACTA+AGG | - | chr8.4:452627-452646 | None:intergenic | 35.0% | |
| CCTTAGTAATACGAGATATG+AGG | + | chr8.4:452624-452643 | MS.gene43459:CDS | 35.0% | |
| CGATGAATTGGAATTGGAAT+TGG | + | chr8.4:448742-448761 | MS.gene43459:CDS | 35.0% | |
| CGTCTTCATTCCTTATACTA+TGG | - | chr8.4:452207-452226 | None:intergenic | 35.0% | |
| GAAACAACAACAAGTCTTTC+AGG | + | chr8.4:448994-449013 | MS.gene43459:CDS | 35.0% | |
| GAAGAGAAAAAGAGGAGAAA+TGG | - | chr8.4:451738-451757 | None:intergenic | 35.0% | |
| GAAGTTGTGAAGAGAGAAAT+AGG | - | chr8.4:451826-451845 | None:intergenic | 35.0% | |
| GACATATTGGAGACGTAAAT+GGG | - | chr8.4:448818-448837 | None:intergenic | 35.0% | |
| GCTATCCAATGCCAAAAAAA+AGG | + | chr8.4:449696-449715 | MS.gene43459:CDS | 35.0% | |
| GGAACTACAGCAAAAACAAA+AGG | + | chr8.4:450168-450187 | MS.gene43459:CDS | 35.0% | |
| GGTGACTCTAAGTAAAATTG+TGG | + | chr8.4:452147-452166 | MS.gene43459:intron | 35.0% | |
| TAAAGCAAGATAGGTGAATC+AGG | - | chr8.4:449396-449415 | None:intergenic | 35.0% | |
| TAGCACTAGCAAACTTGAAA+AGG | + | chr8.4:452475-452494 | MS.gene43459:intron | 35.0% | |
| TAGTATAAGGAATGAAGACG+TGG | + | chr8.4:452207-452226 | MS.gene43459:intron | 35.0% | |
| TCATGATCATGATTCGAATC+AGG | - | chr8.4:448917-448936 | None:intergenic | 35.0% | |
| TCCCCAAAATAGAGAAGAAA+TGG | + | chr8.4:451167-451186 | MS.gene43459:intron | 35.0% | |
| TGAGCACACAACAAAACATA+TGG | - | chr8.4:450661-450680 | None:intergenic | 35.0% | |
| TGGATACCTTTATTGTCATC+AGG | + | chr8.4:450288-450307 | MS.gene43459:CDS | 35.0% | |
| TGGTAATTGAAAGGGAAGTT+TGG | + | chr8.4:450412-450431 | MS.gene43459:intron | 35.0% | |
| TTGGATCCAATATGAACCAA+GGG | - | chr8.4:452073-452092 | None:intergenic | 35.0% | |
| TTTGGATCCAATATGAACCA+AGG | - | chr8.4:452074-452093 | None:intergenic | 35.0% | |
| TTTGGGGAGAAGATAAAAAG+TGG | - | chr8.4:451155-451174 | None:intergenic | 35.0% | |
| ! | AATGGGTTTATTTGTTCGAC+GGG | - | chr8.4:449201-449220 | None:intergenic | 35.0% |
| ! | CCCATTTCTTCTCTATTTTG+GGG | - | chr8.4:451171-451190 | None:intergenic | 35.0% |
| ! | CTCCCATTTCTTCTCTATTT+TGG | - | chr8.4:451173-451192 | None:intergenic | 35.0% |
| ! | CTTTTCTGATTGAATCATGC+AGG | - | chr8.4:452016-452035 | None:intergenic | 35.0% |
| ! | GAATGGGTTTATTTGTTCGA+CGG | - | chr8.4:449202-449221 | None:intergenic | 35.0% |
| ! | TTTTACTGAGGACCAGTTAA+TGG | + | chr8.4:448961-448980 | MS.gene43459:CDS | 35.0% |
| !!! | TAGAATATGTTTTGAGAGGG+GGG | - | chr8.4:451001-451020 | None:intergenic | 35.0% |
| !!! | TCTTTTTTCTGAGATTGAGG+TGG | + | chr8.4:451980-451999 | MS.gene43459:intron | 35.0% |
| !!! | TGGAAGTGTTTTTAGATTGG+AGG | - | chr8.4:450953-450972 | None:intergenic | 35.0% |
| !!! | TTTTGAAGCCAATCGAGTAT+GGG | - | chr8.4:450103-450122 | None:intergenic | 35.0% |
| AACAATTGGGCCAGACATAT+TGG | - | chr8.4:448831-448850 | None:intergenic | 40.0% | |
| AACTACGATGGTGTTTGATG+TGG | + | chr8.4:452519-452538 | MS.gene43459:intron | 40.0% | |
| AATAACCAGAAGGGTCATGT+TGG | - | chr8.4:449946-449965 | None:intergenic | 40.0% | |
| AATTGATACTTGTACTCGCG+TGG | + | chr8.4:451238-451257 | MS.gene43459:intron | 40.0% | |
| ACAAAACACTCAGAGCTTGA+CGG | - | chr8.4:450541-450560 | None:intergenic | 40.0% | |
| ACAATGCCTCTCAAGTGAAA+AGG | + | chr8.4:450461-450480 | MS.gene43459:intron | 40.0% | |
| ACCAAGAACTAACAGCTCTT+GGG | - | chr8.4:449855-449874 | None:intergenic | 40.0% | |
| AGCCCAATTCTGTACATCAT+CGG | - | chr8.4:452660-452679 | None:intergenic | 40.0% | |
| AGGGGTAAAAGAGGGAAAAA+GGG | + | chr8.4:452125-452144 | MS.gene43459:intron | 40.0% | |
| ATATGTCTGGCCCAATTGTT+AGG | + | chr8.4:448831-448850 | MS.gene43459:CDS | 40.0% | |
| ATCCTTCAATCTCAATTCCG+AGG | + | chr8.4:448786-448805 | MS.gene43459:CDS | 40.0% | |
| ATGCCGATGATGTACAGAAT+TGG | + | chr8.4:452654-452673 | MS.gene43459:CDS | 40.0% | |
| ATGTTCTCTGTCTACTTGCA+GGG | + | chr8.4:452587-452606 | MS.gene43459:intron | 40.0% | |
| ATTCCTGTGGAGCTTAATTG+AGG | - | chr8.4:451389-451408 | None:intergenic | 40.0% | |
| CATCAAACACCATCGTAGTT+AGG | - | chr8.4:452519-452538 | None:intergenic | 40.0% | |
| CATTGTTGGGAAGTTATAGG+AGG | + | chr8.4:450769-450788 | MS.gene43459:intron | 40.0% | |
| CCCTCAATACAGATAAGTTC+TGG | - | chr8.4:449880-449899 | None:intergenic | 40.0% | |
| CTCAAAGGATGATGTCTCTT+AGG | + | chr8.4:449467-449486 | MS.gene43459:CDS | 40.0% | |
| CTCTAAGTAAAATTGTGGCG+TGG | + | chr8.4:452152-452171 | MS.gene43459:intron | 40.0% | |
| CTGGTCAAATCAATAGCAGA+TGG | - | chr8.4:450079-450098 | None:intergenic | 40.0% | |
| GAAGTTGCGAAGAGAGAAAT+AGG | - | chr8.4:451796-451815 | None:intergenic | 40.0% | |
| GATTGATTGATCCTGGAATC+AGG | - | chr8.4:449421-449440 | None:intergenic | 40.0% | |
| GCCAGAACTTATCTGTATTG+AGG | + | chr8.4:449876-449895 | MS.gene43459:CDS | 40.0% | |
| GGACAAGATCAATTGCTCAA+CGG | + | chr8.4:449898-449917 | MS.gene43459:CDS | 40.0% | |
| GGATGACGATGAATTGGAAT+TGG | + | chr8.4:448736-448755 | MS.gene43459:CDS | 40.0% | |
| GGGAGAAGATAAAAAGTGGT+GGG | - | chr8.4:451151-451170 | None:intergenic | 40.0% | |
| GTCACAATCACAAGTACAGT+TGG | - | chr8.4:451277-451296 | None:intergenic | 40.0% | |
| GTCAGAATAACAAGCTCTTC+AGG | + | chr8.4:449168-449187 | MS.gene43459:CDS | 40.0% | |
| TATGTCTGGCCCAATTGTTA+GGG | + | chr8.4:448832-448851 | MS.gene43459:CDS | 40.0% | |
| TCAAAGCCATGTCCATTAAC+TGG | - | chr8.4:448976-448995 | None:intergenic | 40.0% | |
| TCACTATGGCTACTCACTTA+GGG | - | chr8.4:451867-451886 | None:intergenic | 40.0% | |
| TCATTGAGACCTAACTACGA+TGG | + | chr8.4:452507-452526 | MS.gene43459:intron | 40.0% | |
| TCCTTCAATCTCAATTCCGA+GGG | + | chr8.4:448787-448806 | MS.gene43459:CDS | 40.0% | |
| TCTATGAAGTCGGTATACGA+TGG | - | chr8.4:452851-452870 | None:intergenic | 40.0% | |
| TCTTGATCTAGCGACAGTTA+TGG | - | chr8.4:450714-450733 | None:intergenic | 40.0% | |
| TGATCATGATTCGAATCAGG+AGG | - | chr8.4:448914-448933 | None:intergenic | 40.0% | |
| TGCCGATGATGTACAGAATT+GGG | + | chr8.4:452655-452674 | MS.gene43459:CDS | 40.0% | |
| TGTCAGAATCAAACACAAGC+AGG | + | chr8.4:449256-449275 | MS.gene43459:CDS | 40.0% | |
| TGTTTCACAGGTCAACACAA+TGG | + | chr8.4:449591-449610 | MS.gene43459:intron | 40.0% | |
| TTCACTATGGCTACTCACTT+AGG | - | chr8.4:451868-451887 | None:intergenic | 40.0% | |
| TTGGAATGTTTGCAGATTCG+AGG | - | chr8.4:452329-452348 | None:intergenic | 40.0% | |
| TTGGGAAGTTATAGGAGGAA+GGG | + | chr8.4:450774-450793 | MS.gene43459:intron | 40.0% | |
| TTGTAAAGAAAAGGTGGAGG+AGG | + | chr8.4:449232-449251 | MS.gene43459:CDS | 40.0% | |
| ! | ACTTAGGGTGTGTTTGGTTT+AGG | - | chr8.4:451852-451871 | None:intergenic | 40.0% |
| ! | GATTCAATCAGAAAAGCACG+AGG | + | chr8.4:452020-452039 | MS.gene43459:intron | 40.0% |
| ! | GTTTTGCCTTTTCACTTGAG+AGG | - | chr8.4:450470-450489 | None:intergenic | 40.0% |
| ! | TGTTAGGGTTCCTCTTTTTC+AGG | + | chr8.4:448847-448866 | MS.gene43459:CDS | 40.0% |
| !! | TGTGATTTAGGTTTTCGGCT+TGG | + | chr8.4:450262-450281 | MS.gene43459:CDS | 40.0% |
| !!! | AGAATATGTTTTGAGAGGGG+GGG | - | chr8.4:451000-451019 | None:intergenic | 40.0% |
| !!! | CAAGCTCTGAGTGTTTTGTT+TGG | + | chr8.4:450542-450561 | MS.gene43459:intron | 40.0% |
| !!! | GTTTTGAAGCCAATCGAGTA+TGG | - | chr8.4:450104-450123 | None:intergenic | 40.0% |
| AACCTTTGTGGCAGAACTTG+TGG | - | chr8.4:449494-449513 | None:intergenic | 45.0% | |
| AAGCCTCAATTAAGCTCCAC+AGG | + | chr8.4:451383-451402 | MS.gene43459:intron | 45.0% | |
| AAGTTATAGGAGGAAGGGAG+GGG | + | chr8.4:450779-450798 | MS.gene43459:intron | 45.0% | |
| ACAACTTCTGAATCCTGCAC+AGG | - | chr8.4:449634-449653 | None:intergenic | 45.0% | |
| ACACAAGCAGGAGGAAGATA+AGG | + | chr8.4:449268-449287 | MS.gene43459:CDS | 45.0% | |
| AGAGTAAACTCTCCACGCTA+TGG | - | chr8.4:452102-452121 | None:intergenic | 45.0% | |
| AGCAAGATAGGTGAATCAGG+AGG | - | chr8.4:449393-449412 | None:intergenic | 45.0% | |
| AGGTCACTGTGGATGACAAA+TGG | + | chr8.4:452756-452775 | MS.gene43459:CDS | 45.0% | |
| ATCCAAATAAGCCCATAGCG+TGG | + | chr8.4:452087-452106 | MS.gene43459:intron | 45.0% | |
| ATCCTCTGCTAGGTGAAGAA+GGG | - | chr8.4:452822-452841 | None:intergenic | 45.0% | |
| ATTATTCTCATCCAGCAGCG+AGG | + | chr8.4:451427-451446 | MS.gene43459:intron | 45.0% | |
| CACCAAGAACTAACAGCTCT+TGG | - | chr8.4:449856-449875 | None:intergenic | 45.0% | |
| CAGAATCAAACACAAGCAGG+AGG | + | chr8.4:449259-449278 | MS.gene43459:CDS | 45.0% | |
| CATGTTCTCTGTCTACTTGC+AGG | + | chr8.4:452586-452605 | MS.gene43459:intron | 45.0% | |
| CCTTCAATCTCAATTCCGAG+GGG | + | chr8.4:448788-448807 | MS.gene43459:CDS | 45.0% | |
| CTACTCACTTAGGGTGTGTT+TGG | - | chr8.4:451858-451877 | None:intergenic | 45.0% | |
| CTGTTAGAGCTGATCAGCTT+GGG | + | chr8.4:452047-452066 | MS.gene43459:intron | 45.0% | |
| CTTGCTTTAGTCCTGATTCC+AGG | + | chr8.4:449407-449426 | MS.gene43459:intron | 45.0% | |
| GAAGTTATAGGAGGAAGGGA+GGG | + | chr8.4:450778-450797 | MS.gene43459:intron | 45.0% | |
| GACCAGGTTATGCAAAAAGC+TGG | + | chr8.4:449920-449939 | MS.gene43459:CDS | 45.0% | |
| GAGGGGTAAAAGAGGGAAAA+AGG | + | chr8.4:452124-452143 | MS.gene43459:intron | 45.0% | |
| GAGTAAACTCTCCACGCTAT+GGG | - | chr8.4:452101-452120 | None:intergenic | 45.0% | |
| GGGGAGAAGATAAAAAGTGG+TGG | - | chr8.4:451152-451171 | None:intergenic | 45.0% | |
| GGGGTAAAAGAGGGAAAAAG+GGG | + | chr8.4:452126-452145 | MS.gene43459:intron | 45.0% | |
| GTTGGCAGATTGATTGATCC+TGG | - | chr8.4:449428-449447 | None:intergenic | 45.0% | |
| GTTGGGAAGTTATAGGAGGA+AGG | + | chr8.4:450773-450792 | MS.gene43459:intron | 45.0% | |
| TAGCGTGGAGAGTTTACTCT+AGG | + | chr8.4:452102-452121 | MS.gene43459:intron | 45.0% | |
| TCTGTTAGAGCTGATCAGCT+TGG | + | chr8.4:452046-452065 | MS.gene43459:intron | 45.0% | |
| TTATTCTCATCCAGCAGCGA+GGG | + | chr8.4:451428-451447 | MS.gene43459:intron | 45.0% | |
| TTGGCTTCAAAACTCCAAGG+AGG | + | chr8.4:450111-450130 | MS.gene43459:CDS | 45.0% | |
| TTGGTTCCTAGCACCATCAT+TGG | + | chr8.4:452420-452439 | MS.gene43459:intron | 45.0% | |
| ! | ACCCAAGAGCTGTTAGTTCT+TGG | + | chr8.4:449851-449870 | MS.gene43459:CDS | 45.0% |
| ! | ACTCTAGGAGGGGTAAAAGA+GGG | + | chr8.4:452117-452136 | MS.gene43459:intron | 45.0% |
| ! | CAAGAGCTGTTAGTTCTTGG+TGG | + | chr8.4:449854-449873 | MS.gene43459:CDS | 45.0% |
| ! | GTGGAGAGTTTACTCTAGGA+GGG | + | chr8.4:452106-452125 | MS.gene43459:intron | 45.0% |
| ! | TACTCTAGGAGGGGTAAAAG+AGG | + | chr8.4:452116-452135 | MS.gene43459:intron | 45.0% |
| ! | TACTGGATTTGGTTGCAGCA+GGG | + | chr8.4:449145-449164 | MS.gene43459:intron | 45.0% |
| ! | TATTGGCCAATGATGGTGCT+AGG | - | chr8.4:452429-452448 | None:intergenic | 45.0% |
| ! | TGAGGACCAGTTAATGGACA+TGG | + | chr8.4:448967-448986 | MS.gene43459:CDS | 45.0% |
| ! | TGGAGAGTTTACTCTAGGAG+GGG | + | chr8.4:452107-452126 | MS.gene43459:intron | 45.0% |
| ! | TTACTGGATTTGGTTGCAGC+AGG | + | chr8.4:449144-449163 | MS.gene43459:intron | 45.0% |
| !! | CGATTGGCTTCAAAACTCCA+AGG | + | chr8.4:450108-450127 | MS.gene43459:CDS | 45.0% |
| !!! | AATATGTTTTGAGAGGGGGG+GGG | - | chr8.4:450998-451017 | None:intergenic | 45.0% |
| !!! | GAATATGTTTTGAGAGGGGG+GGG | - | chr8.4:450999-451018 | None:intergenic | 45.0% |
| AACTCTGCTGCTGCAGCATT+AGG | - | chr8.4:449049-449068 | None:intergenic | 50.0% | |
| AAGCCAATCGAGTATGGGTC+TGG | - | chr8.4:450098-450117 | None:intergenic | 50.0% | |
| ACTCAGAGCTTGACGGAACA+AGG | - | chr8.4:450534-450553 | None:intergenic | 50.0% | |
| CAGAGCTACAAAGGTCACTG+TGG | + | chr8.4:452745-452764 | MS.gene43459:CDS | 50.0% | |
| CATCCTCTGCTAGGTGAAGA+AGG | - | chr8.4:452823-452842 | None:intergenic | 50.0% | |
| CCCCTCGGAATTGAGATTGA+AGG | - | chr8.4:448791-448810 | None:intergenic | 50.0% | |
| CGTGGAGAGTTTACTCTAGG+AGG | + | chr8.4:452105-452124 | MS.gene43459:intron | 50.0% | |
| CTCCACGCTATGGGCTTATT+TGG | - | chr8.4:452092-452111 | None:intergenic | 50.0% | |
| CTCGTTACAAGAGGGACTAG+AGG | - | chr8.4:449987-450006 | None:intergenic | 50.0% | |
| CTTCTTCACCTAGCAGAGGA+TGG | + | chr8.4:452821-452840 | MS.gene43459:CDS | 50.0% | |
| CTTGGGCCCTTGGTTCATAT+TGG | + | chr8.4:452064-452083 | MS.gene43459:intron | 50.0% | |
| GATCAATTGCTCAACGGACC+AGG | + | chr8.4:449904-449923 | MS.gene43459:CDS | 50.0% | |
| GCTTCAAAACTCCAAGGAGG+AGG | + | chr8.4:450114-450133 | MS.gene43459:CDS | 50.0% | |
| GGAAGTTATAGGAGGAAGGG+AGG | + | chr8.4:450777-450796 | MS.gene43459:intron | 50.0% | |
| GGTCAACACAATGGCTCTTC+AGG | + | chr8.4:449600-449619 | MS.gene43459:intron | 50.0% | |
| GTCCACAAGTTCTGCCACAA+AGG | + | chr8.4:449489-449508 | MS.gene43459:CDS | 50.0% | |
| TCAATCTCAATTCCGAGGGG+TGG | + | chr8.4:448791-448810 | MS.gene43459:CDS | 50.0% | |
| TCCTATAGGAGCTACGCTCT+GGG | + | chr8.4:452285-452304 | MS.gene43459:intron | 50.0% | |
| TCTGACGACCAGTTTCTTGC+AGG | + | chr8.4:450027-450046 | MS.gene43459:intron | 50.0% | |
| TGACCAGACCCATACTCGAT+TGG | + | chr8.4:450092-450111 | MS.gene43459:CDS | 50.0% | |
| TTCCCTTCTTCACCTAGCAG+AGG | + | chr8.4:452817-452836 | MS.gene43459:CDS | 50.0% | |
| TTCCTATAGGAGCTACGCTC+TGG | + | chr8.4:452284-452303 | MS.gene43459:intron | 50.0% | |
| TTTCTTCTGTGCCTCCTCCT+TGG | - | chr8.4:450128-450147 | None:intergenic | 50.0% | |
| ! | ACTGGATTTGGTTGCAGCAG+GGG | + | chr8.4:449146-449165 | MS.gene43459:intron | 50.0% |
| ! | AGGAGGAGGCACAGAAGAAA+TGG | + | chr8.4:450128-450147 | MS.gene43459:CDS | 50.0% |
| ! | GGAGGAGGCACAGAAGAAAT+GGG | + | chr8.4:450129-450148 | MS.gene43459:CDS | 50.0% |
| ! | GGCCAGCTTTTTGCATAACC+TGG | - | chr8.4:449925-449944 | None:intergenic | 50.0% |
| !!! | ATATGTTTTGAGAGGGGGGG+GGG | - | chr8.4:450997-451016 | None:intergenic | 50.0% |
| !!! | TTAGGTTTTCGGCTTGGTGC+TGG | + | chr8.4:450268-450287 | MS.gene43459:CDS | 50.0% |
| ACGTAAATGGGTCCACCCCT+CGG | - | chr8.4:448806-448825 | None:intergenic | 55.0% | |
| AGGAAGGGAGGGGAAAGGAA+AGG | + | chr8.4:450789-450808 | MS.gene43459:intron | 55.0% | |
| AGGGGAAAGGAAAGGAGAGG+AGG | + | chr8.4:450797-450816 | MS.gene43459:intron | 55.0% | |
| ATAGGAGGAAGGGAGGGGAA+AGG | + | chr8.4:450784-450803 | MS.gene43459:intron | 55.0% | |
| ATGGAGAGCCATCCTCTGCT+AGG | - | chr8.4:452832-452851 | None:intergenic | 55.0% | |
| GGGAAAGGAAAGGAGAGGAG+GGG | + | chr8.4:450799-450818 | MS.gene43459:intron | 55.0% | |
| GGGGAAAGGAAAGGAGAGGA+GGG | + | chr8.4:450798-450817 | MS.gene43459:intron | 55.0% | |
| TCTGCTGCTGCAGCATTAGG+AGG | - | chr8.4:449046-449065 | None:intergenic | 55.0% | |
| ! | AGCTACGCTCTGGGCAGTTT+AGG | + | chr8.4:452294-452313 | MS.gene43459:intron | 55.0% |
| ! | TCAGGAGCACATACCTGTGC+AGG | + | chr8.4:449618-449637 | MS.gene43459:CDS | 55.0% |
| !!! | TATGTTTTGAGAGGGGGGGG+GGG | - | chr8.4:450996-451015 | None:intergenic | 55.0% |
| AGCTGATCAGCTTGGGCCCT+TGG | + | chr8.4:452054-452073 | MS.gene43459:intron | 60.0% | |
| GCCCAGAGCGTAGCTCCTAT+AGG | - | chr8.4:452289-452308 | None:intergenic | 60.0% | |
| GCTGGCCAACATGACCCTTC+TGG | + | chr8.4:449938-449957 | MS.gene43459:CDS | 60.0% | |
| GGGAGGGGAAAGGAAAGGAG+AGG | + | chr8.4:450794-450813 | MS.gene43459:intron | 60.0% | |
| !!! | ATGTTTTGAGAGGGGGGGGG+GGG | - | chr8.4:450995-451014 | None:intergenic | 60.0% |
| GGGGGGGACCCAACAAGGTT+TGG | - | chr8.4:450973-450992 | None:intergenic | 65.0% | |
| TTGCTGCGATCCCTCGCTGC+TGG | - | chr8.4:451441-451460 | None:intergenic | 65.0% | |
| !!! | TGTTTTGAGAGGGGGGGGGG+GGG | - | chr8.4:450994-451013 | None:intergenic | 65.0% |
| !! | TTTTGAGAGGGGGGGGGGGG+GGG | - | chr8.4:450992-451011 | None:intergenic | 70.0% |
| !!! | GTTTTGAGAGGGGGGGGGGG+GGG | - | chr8.4:450993-451012 | None:intergenic | 70.0% |
| TTTGAGAGGGGGGGGGGGGG+GGG | - | chr8.4:450991-451010 | None:intergenic | 75.0% | |
| ! | GGGGGGGGGGGGACCCAACA+AGG | - | chr8.4:450978-450997 | None:intergenic | 80.0% |
| ! | TTGAGAGGGGGGGGGGGGGG+GGG | - | chr8.4:450990-451009 | None:intergenic | 80.0% |
| ! | TGAGAGGGGGGGGGGGGGGG+GGG | - | chr8.4:450989-451008 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 448734 | 452892 | 448734 | ID=MS.gene43459 |
| chr8.4 | mRNA | 448734 | 452892 | 448734 | ID=MS.gene43459.t1;Parent=MS.gene43459 |
| chr8.4 | exon | 448734 | 449065 | 448734 | ID=MS.gene43459.t1.exon1;Parent=MS.gene43459.t1 |
| chr8.4 | CDS | 448734 | 449065 | 448734 | ID=cds.MS.gene43459.t1;Parent=MS.gene43459.t1 |
| chr8.4 | exon | 449166 | 449315 | 449166 | ID=MS.gene43459.t1.exon2;Parent=MS.gene43459.t1 |
| chr8.4 | CDS | 449166 | 449315 | 449166 | ID=cds.MS.gene43459.t1;Parent=MS.gene43459.t1 |
| chr8.4 | exon | 449417 | 449510 | 449417 | ID=MS.gene43459.t1.exon3;Parent=MS.gene43459.t1 |
| chr8.4 | CDS | 449417 | 449510 | 449417 | ID=cds.MS.gene43459.t1;Parent=MS.gene43459.t1 |
| chr8.4 | exon | 449601 | 449717 | 449601 | ID=MS.gene43459.t1.exon4;Parent=MS.gene43459.t1 |
| chr8.4 | CDS | 449601 | 449717 | 449601 | ID=cds.MS.gene43459.t1;Parent=MS.gene43459.t1 |
| chr8.4 | exon | 449851 | 449976 | 449851 | ID=MS.gene43459.t1.exon5;Parent=MS.gene43459.t1 |
| chr8.4 | CDS | 449851 | 449976 | 449851 | ID=cds.MS.gene43459.t1;Parent=MS.gene43459.t1 |
| chr8.4 | exon | 450049 | 450309 | 450049 | ID=MS.gene43459.t1.exon6;Parent=MS.gene43459.t1 |
| chr8.4 | CDS | 450049 | 450309 | 450049 | ID=cds.MS.gene43459.t1;Parent=MS.gene43459.t1 |
| chr8.4 | exon | 452608 | 452892 | 452608 | ID=MS.gene43459.t1.exon7;Parent=MS.gene43459.t1 |
| chr8.4 | CDS | 452608 | 452892 | 452608 | ID=cds.MS.gene43459.t1;Parent=MS.gene43459.t1 |
| Gene Sequence |
| Protein sequence |
