Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38976.t1 | XP_013445165.1 | 93.6 | 235 | 15 | 0 | 1 | 235 | 1 | 235 | 1.70E-108 | 402.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38976.t1 | Q9LH79 | 65.2 | 233 | 76 | 3 | 4 | 234 | 6 | 235 | 2.2e-75 | 283.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38976.t1 | G7ZV40 | 93.6 | 235 | 15 | 0 | 1 | 235 | 1 | 235 | 1.3e-108 | 402.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene38976 | 0.808396 | 3.16E-50 | -1.69E-46 |
| MS.gene049435 | MS.gene38976 | 0.81182 | 5.78E-51 | -1.69E-46 |
| MS.gene049666 | MS.gene38976 | 0.804336 | 2.27E-49 | -1.69E-46 |
| MS.gene050026 | MS.gene38976 | 0.850947 | 1.22E-60 | -1.69E-46 |
| MS.gene050201 | MS.gene38976 | 0.812034 | 5.19E-51 | -1.69E-46 |
| MS.gene050355 | MS.gene38976 | 0.813716 | 2.22E-51 | -1.69E-46 |
| MS.gene050442 | MS.gene38976 | 0.810867 | 9.31E-51 | -1.69E-46 |
| MS.gene050750 | MS.gene38976 | 0.803326 | 3.68E-49 | -1.69E-46 |
| MS.gene050780 | MS.gene38976 | 0.807705 | 4.44E-50 | -1.69E-46 |
| MS.gene051207 | MS.gene38976 | 0.806526 | 7.88E-50 | -1.69E-46 |
| MS.gene051265 | MS.gene38976 | 0.828076 | 1.10E-54 | -1.69E-46 |
| MS.gene051594 | MS.gene38976 | 0.824539 | 7.64E-54 | -1.69E-46 |
| MS.gene051719 | MS.gene38976 | 0.800313 | 1.53E-48 | -1.69E-46 |
| MS.gene051744 | MS.gene38976 | 0.817445 | 3.29E-52 | -1.69E-46 |
| MS.gene052190 | MS.gene38976 | 0.811687 | 6.18E-51 | -1.69E-46 |
| MS.gene052208 | MS.gene38976 | 0.824196 | 9.20E-54 | -1.69E-46 |
| MS.gene052447 | MS.gene38976 | 0.808145 | 3.58E-50 | -1.69E-46 |
| MS.gene052488 | MS.gene38976 | 0.820269 | 7.50E-53 | -1.69E-46 |
| MS.gene052519 | MS.gene38976 | 0.811395 | 7.15E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene38976 | 0.811617 | 6.40E-51 | -1.69E-46 |
| MS.gene052616 | MS.gene38976 | 0.806761 | 7.03E-50 | -1.69E-46 |
| MS.gene052843 | MS.gene38976 | 0.817807 | 2.72E-52 | -1.69E-46 |
| MS.gene053054 | MS.gene38976 | -0.801727 | 7.86E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene38976 | 0.806651 | 7.42E-50 | -1.69E-46 |
| MS.gene053883 | MS.gene38976 | 0.818136 | 2.29E-52 | -1.69E-46 |
| MS.gene053966 | MS.gene38976 | 0.802932 | 4.44E-49 | -1.69E-46 |
| MS.gene053974 | MS.gene38976 | 0.809681 | 1.68E-50 | -1.69E-46 |
| MS.gene053998 | MS.gene38976 | 0.818133 | 2.30E-52 | -1.69E-46 |
| MS.gene05414 | MS.gene38976 | 0.840216 | 9.94E-58 | -1.69E-46 |
| MS.gene05415 | MS.gene38976 | 0.850053 | 2.18E-60 | -1.69E-46 |
| MS.gene054291 | MS.gene38976 | -0.818449 | 1.95E-52 | -1.69E-46 |
| MS.gene054467 | MS.gene38976 | 0.800918 | 1.15E-48 | -1.69E-46 |
| MS.gene054468 | MS.gene38976 | 0.803717 | 3.05E-49 | -1.69E-46 |
| MS.gene055357 | MS.gene38976 | 0.838651 | 2.53E-57 | -1.69E-46 |
| MS.gene055542 | MS.gene38976 | 0.809005 | 2.34E-50 | -1.69E-46 |
| MS.gene055778 | MS.gene38976 | 0.804237 | 2.38E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene38976 | 0.836553 | 8.75E-57 | -1.69E-46 |
| MS.gene056050 | MS.gene38976 | 0.823284 | 1.51E-53 | -1.69E-46 |
| MS.gene056174 | MS.gene38976 | 0.80933 | 2.00E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene38976 | 0.810205 | 1.29E-50 | -1.69E-46 |
| MS.gene056373 | MS.gene38976 | 0.801619 | 8.27E-49 | -1.69E-46 |
| MS.gene056498 | MS.gene38976 | 0.823371 | 1.44E-53 | -1.69E-46 |
| MS.gene057021 | MS.gene38976 | 0.80319 | 3.92E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene38976 | 0.83243 | 9.50E-56 | -1.69E-46 |
| MS.gene057314 | MS.gene38976 | 0.810701 | 1.01E-50 | -1.69E-46 |
| MS.gene057414 | MS.gene38976 | 0.822405 | 2.41E-53 | -1.69E-46 |
| MS.gene057444 | MS.gene38976 | 0.839704 | 1.35E-57 | -1.69E-46 |
| MS.gene058037 | MS.gene38976 | 0.802514 | 5.41E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene38976 | 0.812524 | 4.06E-51 | -1.69E-46 |
| MS.gene058979 | MS.gene38976 | 0.815712 | 8.03E-52 | -1.69E-46 |
| MS.gene059015 | MS.gene38976 | 0.805101 | 1.57E-49 | -1.69E-46 |
| MS.gene05925 | MS.gene38976 | 0.803845 | 2.87E-49 | -1.69E-46 |
| MS.gene059272 | MS.gene38976 | 0.806696 | 7.26E-50 | -1.69E-46 |
| MS.gene059459 | MS.gene38976 | 0.802073 | 6.67E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene38976 | 0.801951 | 7.07E-49 | -1.69E-46 |
| MS.gene059584 | MS.gene38976 | 0.845324 | 4.36E-59 | -1.69E-46 |
| MS.gene059625 | MS.gene38976 | 0.814771 | 1.30E-51 | -1.69E-46 |
| MS.gene060137 | MS.gene38976 | -0.802727 | 4.89E-49 | -1.69E-46 |
| MS.gene060521 | MS.gene38976 | 0.807972 | 3.89E-50 | -1.69E-46 |
| MS.gene060553 | MS.gene38976 | 0.806552 | 7.78E-50 | -1.69E-46 |
| MS.gene060634 | MS.gene38976 | -0.816434 | 5.54E-52 | -1.69E-46 |
| MS.gene060918 | MS.gene38976 | 0.812255 | 4.65E-51 | -1.69E-46 |
| MS.gene060919 | MS.gene38976 | 0.806801 | 6.90E-50 | -1.69E-46 |
| MS.gene061040 | MS.gene38976 | -0.810734 | 9.95E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38976.t1 | MTR_8g042490 | 95.319 | 235 | 11 | 0 | 1 | 235 | 1 | 235 | 1.58e-160 | 444 |
| MS.gene38976.t1 | MTR_2g073190 | 77.021 | 235 | 53 | 1 | 1 | 234 | 1 | 235 | 5.96e-125 | 369 |
| MS.gene38976.t1 | MTR_1g029380 | 48.095 | 210 | 109 | 0 | 18 | 227 | 9 | 218 | 5.56e-66 | 204 |
| MS.gene38976.t1 | MTR_3g089125 | 48.357 | 213 | 109 | 1 | 18 | 229 | 9 | 221 | 1.89e-65 | 203 |
| MS.gene38976.t1 | MTR_3g080990 | 44.749 | 219 | 119 | 2 | 8 | 224 | 2 | 220 | 7.95e-56 | 179 |
| MS.gene38976.t1 | MTR_6g007633 | 41.441 | 222 | 122 | 4 | 14 | 228 | 8 | 228 | 1.03e-51 | 167 |
| MS.gene38976.t1 | MTR_1g028460 | 40.376 | 213 | 124 | 2 | 9 | 218 | 1 | 213 | 1.86e-49 | 162 |
| MS.gene38976.t1 | MTR_6g007637 | 41.204 | 216 | 123 | 3 | 10 | 222 | 5 | 219 | 3.72e-49 | 161 |
| MS.gene38976.t1 | MTR_8g099730 | 40.000 | 215 | 127 | 2 | 10 | 222 | 14 | 228 | 2.20e-48 | 160 |
| MS.gene38976.t1 | MTR_3g090940 | 37.500 | 216 | 132 | 2 | 16 | 228 | 8 | 223 | 8.54e-48 | 158 |
| MS.gene38976.t1 | MTR_3g090950 | 37.500 | 216 | 132 | 2 | 16 | 228 | 8 | 223 | 5.83e-47 | 156 |
| MS.gene38976.t1 | MTR_6g007623 | 39.189 | 222 | 129 | 3 | 14 | 229 | 5 | 226 | 1.77e-46 | 154 |
| MS.gene38976.t1 | MTR_5g067530 | 38.605 | 215 | 128 | 3 | 18 | 230 | 14 | 226 | 4.00e-41 | 141 |
| MS.gene38976.t1 | MTR_8g096320 | 38.756 | 209 | 120 | 4 | 18 | 222 | 13 | 217 | 1.60e-40 | 139 |
| MS.gene38976.t1 | MTR_2g007890 | 35.455 | 220 | 136 | 3 | 16 | 233 | 14 | 229 | 1.64e-40 | 140 |
| MS.gene38976.t1 | MTR_6g034600 | 64.228 | 123 | 32 | 2 | 113 | 235 | 1 | 111 | 3.21e-40 | 134 |
| MS.gene38976.t1 | MTR_3g098910 | 37.441 | 211 | 124 | 3 | 16 | 222 | 11 | 217 | 1.33e-38 | 136 |
| MS.gene38976.t1 | MTR_2g436310 | 41.121 | 214 | 115 | 4 | 18 | 226 | 9 | 216 | 2.51e-38 | 134 |
| MS.gene38976.t1 | MTR_7g007490 | 38.073 | 218 | 125 | 4 | 18 | 229 | 14 | 227 | 2.57e-37 | 131 |
| MS.gene38976.t1 | MTR_5g092600 | 36.453 | 203 | 126 | 2 | 23 | 224 | 18 | 218 | 4.35e-36 | 128 |
| MS.gene38976.t1 | MTR_7g405710 | 38.140 | 215 | 130 | 2 | 16 | 229 | 11 | 223 | 1.16e-35 | 127 |
| MS.gene38976.t1 | MTR_4g106990 | 36.364 | 198 | 124 | 2 | 34 | 229 | 35 | 232 | 1.34e-35 | 126 |
| MS.gene38976.t1 | MTR_7g405730 | 39.706 | 204 | 120 | 2 | 18 | 220 | 13 | 214 | 1.60e-35 | 127 |
| MS.gene38976.t1 | MTR_6g007610 | 33.621 | 232 | 136 | 4 | 12 | 228 | 6 | 234 | 2.14e-35 | 126 |
| MS.gene38976.t1 | MTR_8g096310 | 33.641 | 217 | 135 | 5 | 18 | 229 | 13 | 225 | 1.17e-33 | 122 |
| MS.gene38976.t1 | MTR_3g098930 | 37.222 | 180 | 112 | 1 | 18 | 197 | 14 | 192 | 6.57e-31 | 113 |
| MS.gene38976.t1 | MTR_8g099730 | 38.994 | 159 | 95 | 2 | 66 | 222 | 6 | 164 | 3.79e-30 | 111 |
| MS.gene38976.t1 | MTR_8g096320 | 39.073 | 151 | 85 | 3 | 76 | 222 | 15 | 162 | 7.09e-26 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38976.t1 | AT3G14770 | 66.524 | 233 | 73 | 3 | 4 | 234 | 6 | 235 | 3.37e-104 | 301 |
| MS.gene38976.t1 | AT1G21460 | 46.919 | 211 | 112 | 0 | 18 | 228 | 9 | 219 | 6.48e-65 | 202 |
| MS.gene38976.t1 | AT1G21460 | 46.032 | 189 | 102 | 0 | 11 | 199 | 2 | 190 | 1.18e-53 | 172 |
| MS.gene38976.t1 | AT5G62850 | 37.727 | 220 | 135 | 2 | 11 | 228 | 5 | 224 | 3.57e-51 | 166 |
| MS.gene38976.t1 | AT4G10850 | 40.807 | 223 | 124 | 4 | 14 | 229 | 10 | 231 | 8.72e-51 | 166 |
| MS.gene38976.t1 | AT5G53190 | 40.670 | 209 | 121 | 2 | 18 | 223 | 10 | 218 | 1.05e-48 | 161 |
| MS.gene38976.t1 | AT1G66770 | 40.845 | 213 | 121 | 3 | 14 | 222 | 10 | 221 | 4.19e-47 | 157 |
| MS.gene38976.t1 | AT5G13170 | 38.756 | 209 | 124 | 2 | 18 | 224 | 15 | 221 | 4.17e-45 | 152 |
| MS.gene38976.t1 | AT5G40260 | 36.406 | 217 | 133 | 4 | 18 | 229 | 12 | 228 | 2.40e-42 | 144 |
| MS.gene38976.t1 | AT4G15920 | 40.385 | 208 | 118 | 3 | 18 | 222 | 9 | 213 | 4.24e-42 | 143 |
| MS.gene38976.t1 | AT5G23660 | 40.000 | 205 | 116 | 3 | 18 | 219 | 15 | 215 | 5.11e-42 | 144 |
| MS.gene38976.t1 | AT3G28007 | 39.640 | 222 | 126 | 5 | 3 | 221 | 1 | 217 | 9.49e-42 | 142 |
| MS.gene38976.t1 | AT3G48740 | 39.024 | 205 | 118 | 3 | 18 | 219 | 15 | 215 | 1.95e-41 | 143 |
| MS.gene38976.t1 | AT5G50800 | 37.838 | 222 | 129 | 5 | 18 | 233 | 13 | 231 | 1.12e-40 | 141 |
| MS.gene38976.t1 | AT4G25010 | 39.910 | 223 | 124 | 6 | 18 | 233 | 13 | 232 | 1.21e-40 | 140 |
| MS.gene38976.t1 | AT5G62850 | 36.316 | 190 | 120 | 1 | 11 | 199 | 5 | 194 | 1.27e-39 | 136 |
| MS.gene38976.t1 | AT2G39060 | 36.842 | 209 | 129 | 2 | 18 | 225 | 13 | 219 | 3.53e-39 | 136 |
| MS.gene38976.t1 | AT3G16690 | 37.019 | 208 | 125 | 4 | 18 | 222 | 9 | 213 | 1.37e-37 | 131 |
| MS.gene38976.t1 | AT3G16690 | 36.406 | 217 | 126 | 5 | 18 | 231 | 44 | 251 | 1.77e-37 | 132 |
| MS.gene38976.t1 | AT5G50790 | 38.318 | 214 | 127 | 3 | 18 | 229 | 13 | 223 | 5.58e-37 | 131 |
| MS.gene38976.t1 | AT5G40260 | 36.145 | 166 | 103 | 2 | 18 | 180 | 12 | 177 | 1.28e-31 | 115 |
| MS.gene38976.t1 | AT3G16690 | 32.624 | 141 | 89 | 4 | 18 | 155 | 9 | 146 | 5.52e-16 | 73.9 |
Find 41 sgRNAs with CRISPR-Local
Find 57 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTATCTCCTTCTTTCTTTA+TGG | 0.090234 | 8.4:+49128402 | MS.gene38976:CDS |
| GCTTACTCCATTTGTGAAAT+TGG | 0.125093 | 8.4:+49127482 | MS.gene38976:CDS |
| TGAATTGTAGACCCACATTT+AGG | 0.291772 | 8.4:+49127748 | MS.gene38976:intron |
| GTAGGTAATATCTTTGCATT+TGG | 0.325780 | 8.4:+49127623 | MS.gene38976:intron |
| GTTACCACTGTTAATTCAAT+TGG | 0.337932 | 8.4:+49127891 | MS.gene38976:CDS |
| TATATCACCTGATAATTTGT+TGG | 0.346753 | 8.4:+49127869 | MS.gene38976:CDS |
| TTCAATAGAGAATAAATATA+TGG | 0.355541 | 8.4:-49127813 | None:intergenic |
| TTTAGGAGAATTATGAGAAA+TGG | 0.365995 | 8.4:+49127765 | MS.gene38976:CDS |
| TGAACTGTTTGATCTGTTTG+TGG | 0.376105 | 8.4:+49127832 | MS.gene38976:CDS |
| TAGGTAATATCTTTGCATTT+GGG | 0.393033 | 8.4:+49127624 | MS.gene38976:intron |
| TTGATTTGTTAGGTACCAAA+TGG | 0.416862 | 8.4:+49128562 | MS.gene38976:intron |
| AAAGATGCAGCTGGAATTGC+TGG | 0.429368 | 8.4:+49127506 | MS.gene38976:CDS |
| AAATGGGATAGGTACTGTTC+TGG | 0.436030 | 8.4:+49128579 | MS.gene38976:CDS |
| ATCTTTACCAATTTCACAAA+TGG | 0.440430 | 8.4:-49127489 | None:intergenic |
| GTGGTAACCAACAAATTATC+AGG | 0.453364 | 8.4:-49127876 | None:intergenic |
| TGTTTGATCTGTTTGTGGTA+TGG | 0.469548 | 8.4:+49127837 | MS.gene38976:CDS |
| GAGAATGTTTGGATTATTGA+TGG | 0.473125 | 8.4:+49128075 | MS.gene38976:CDS |
| GGATCAACGGAAATGTTCTC+AGG | 0.474813 | 8.4:+49127786 | MS.gene38976:CDS |
| TCTATGCGCCGAATGTTAGT+TGG | 0.491353 | 8.4:+49128154 | MS.gene38976:CDS |
| TCTCATAATTCTCCTAAATG+TGG | 0.499347 | 8.4:-49127760 | None:intergenic |
| GTAGAAAGCGAAAGATAAAA+CGG | 0.499503 | 8.4:-49128369 | None:intergenic |
| AATGGGATAGGTACTGTTCT+GGG | 0.502068 | 8.4:+49128580 | MS.gene38976:CDS |
| AGAACAGTACCTATCCCATT+TGG | 0.512492 | 8.4:-49128577 | None:intergenic |
| TGATTTGTTAGGTACCAAAT+GGG | 0.514371 | 8.4:+49128563 | MS.gene38976:intron |
| AAATTATCAGGTGATATAAG+AGG | 0.515068 | 8.4:-49127864 | None:intergenic |
| GAAGGAGATACTCATTAAGA+AGG | 0.515628 | 8.4:-49128391 | None:intergenic |
| CTCATAATTCTCCTAAATGT+GGG | 0.519009 | 8.4:-49127759 | None:intergenic |
| TCAAGCATCCAACTAACATT+CGG | 0.535361 | 8.4:-49128162 | None:intergenic |
| TATTTGTGATCATACTAGTC+GGG | 0.546736 | 8.4:+49128110 | MS.gene38976:CDS |
| TAGTAATCCATAAAGAAAGA+AGG | 0.551073 | 8.4:-49128409 | None:intergenic |
| AGTCGGGAGCTTGAAAATAA+CGG | 0.564636 | 8.4:+49128126 | MS.gene38976:CDS |
| TTATCCATACGACACTATCA+AGG | 0.565472 | 8.4:-49128665 | None:intergenic |
| TGTTAGGTACCAAATGGGAT+AGG | 0.566157 | 8.4:+49128568 | MS.gene38976:intron |
| GAAATTGGTAAAGATGCAGC+TGG | 0.580425 | 8.4:+49127497 | MS.gene38976:CDS |
| GAACCCTTGATAGTGTCGTA+TGG | 0.586423 | 8.4:+49128661 | MS.gene38976:CDS |
| ATATTTGTGATCATACTAGT+CGG | 0.588397 | 8.4:+49128109 | MS.gene38976:CDS |
| TACAATTATAAACAATGGAG+AGG | 0.595947 | 8.4:-49128212 | None:intergenic |
| AAACTTACAATTATAAACAA+TGG | 0.596709 | 8.4:-49128217 | None:intergenic |
| AATTATGAGAAATGGATCAA+CGG | 0.620127 | 8.4:+49127773 | MS.gene38976:CDS |
| TATCCATACGACACTATCAA+GGG | 0.638241 | 8.4:-49128664 | None:intergenic |
| TGCTCCAATTGAATTAACAG+TGG | 0.678257 | 8.4:-49127895 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATAAAATACTTACAT+TGG | - | chr8.4:49127662-49127681 | None:intergenic | 10.0% |
| !!! | ATATCTTTTGATTATTAATT+TGG | + | chr8.4:49127716-49127735 | MS.gene38976:intron | 10.0% |
| !!! | TATTTTATACTTTTTTTGAT+AGG | + | chr8.4:49128051-49128070 | MS.gene38976:intron | 10.0% |
| !!! | TATTTTTCTAATACTATATA+TGG | + | chr8.4:49127980-49127999 | MS.gene38976:intron | 10.0% |
| !! | AAACTTACAATTATAAACAA+TGG | - | chr8.4:49128220-49128239 | None:intergenic | 15.0% |
| !! | ATAAAATAACTGAAAATTAG+AGG | - | chr8.4:49127546-49127565 | None:intergenic | 15.0% |
| !! | TTCAATAGAGAATAAATATA+TGG | - | chr8.4:49127816-49127835 | None:intergenic | 15.0% |
| !! | CTATATAATTTCACAGAAAT+TGG | + | chr8.4:49128317-49128336 | MS.gene38976:intron | 20.0% |
| !!! | AGAAAAATAACAACCTTTTT+TGG | - | chr8.4:49127969-49127988 | None:intergenic | 20.0% |
| !!! | GAATTCAGATTTTATTTTGT+TGG | + | chr8.4:49128511-49128530 | MS.gene38976:intron | 20.0% |
| ! | AAATTATCAGGTGATATAAG+AGG | - | chr8.4:49127867-49127886 | None:intergenic | 25.0% |
| ! | AATTATGAGAAATGGATCAA+CGG | + | chr8.4:49127773-49127792 | MS.gene38976:CDS | 25.0% |
| ! | ACAAATCAAACACAAAATGT+AGG | - | chr8.4:49128551-49128570 | None:intergenic | 25.0% |
| ! | ATATTTGTGATCATACTAGT+CGG | + | chr8.4:49128109-49128128 | MS.gene38976:CDS | 25.0% |
| ! | ATCTTTACCAATTTCACAAA+TGG | - | chr8.4:49127492-49127511 | None:intergenic | 25.0% |
| ! | ATTCTTGCTTGTTTATTTGT+AGG | + | chr8.4:49127605-49127624 | MS.gene38976:intron | 25.0% |
| ! | TACAATTATAAACAATGGAG+AGG | - | chr8.4:49128215-49128234 | None:intergenic | 25.0% |
| ! | TAGGTAATATCTTTGCATTT+GGG | + | chr8.4:49127624-49127643 | MS.gene38976:intron | 25.0% |
| ! | TAGTAAAACTCAGTATTACT+TGG | - | chr8.4:49128260-49128279 | None:intergenic | 25.0% |
| ! | TAGTAATCCATAAAGAAAGA+AGG | - | chr8.4:49128412-49128431 | None:intergenic | 25.0% |
| ! | TTTAGGAGAATTATGAGAAA+TGG | + | chr8.4:49127765-49127784 | MS.gene38976:CDS | 25.0% |
| !! | TATATCACCTGATAATTTGT+TGG | + | chr8.4:49127869-49127888 | MS.gene38976:CDS | 25.0% |
| !!! | CATTTTGTGTTTGATTTGTT+AGG | + | chr8.4:49128552-49128571 | MS.gene38976:intron | 25.0% |
| AGTATCTCCTTCTTTCTTTA+TGG | + | chr8.4:49128402-49128421 | MS.gene38976:CDS | 30.0% | |
| CTCATAATTCTCCTAAATGT+GGG | - | chr8.4:49127762-49127781 | None:intergenic | 30.0% | |
| GAGAATGTTTGGATTATTGA+TGG | + | chr8.4:49128075-49128094 | MS.gene38976:CDS | 30.0% | |
| GTAGAAAGCGAAAGATAAAA+CGG | - | chr8.4:49128372-49128391 | None:intergenic | 30.0% | |
| GTAGGTAATATCTTTGCATT+TGG | + | chr8.4:49127623-49127642 | MS.gene38976:intron | 30.0% | |
| GTTACCACTGTTAATTCAAT+TGG | + | chr8.4:49127891-49127910 | MS.gene38976:CDS | 30.0% | |
| TATTTGTGATCATACTAGTC+GGG | + | chr8.4:49128110-49128129 | MS.gene38976:CDS | 30.0% | |
| TCTCATAATTCTCCTAAATG+TGG | - | chr8.4:49127763-49127782 | None:intergenic | 30.0% | |
| ! | TTTTGATAGGTGAGAATGTT+TGG | + | chr8.4:49128064-49128083 | MS.gene38976:intron | 30.0% |
| !! | TGATTTGTTAGGTACCAAAT+GGG | + | chr8.4:49128563-49128582 | MS.gene38976:intron | 30.0% |
| !! | TTGATTTGTTAGGTACCAAA+TGG | + | chr8.4:49128562-49128581 | MS.gene38976:intron | 30.0% |
| AGTTTGTGTGAATTCAAGCT+TGG | + | chr8.4:49128279-49128298 | MS.gene38976:intron | 35.0% | |
| CTATGCTGAGAAACCAAAAA+AGG | + | chr8.4:49127953-49127972 | MS.gene38976:CDS | 35.0% | |
| GAAGGAGATACTCATTAAGA+AGG | - | chr8.4:49128394-49128413 | None:intergenic | 35.0% | |
| GCTTACTCCATTTGTGAAAT+TGG | + | chr8.4:49127482-49127501 | MS.gene38976:CDS | 35.0% | |
| GTGGTAACCAACAAATTATC+AGG | - | chr8.4:49127879-49127898 | None:intergenic | 35.0% | |
| TATCCATACGACACTATCAA+GGG | - | chr8.4:49128667-49128686 | None:intergenic | 35.0% | |
| TCAAGCATCCAACTAACATT+CGG | - | chr8.4:49128165-49128184 | None:intergenic | 35.0% | |
| TGAACTGTTTGATCTGTTTG+TGG | + | chr8.4:49127832-49127851 | MS.gene38976:CDS | 35.0% | |
| TGAATTGTAGACCCACATTT+AGG | + | chr8.4:49127748-49127767 | MS.gene38976:intron | 35.0% | |
| TGCTCCAATTGAATTAACAG+TGG | - | chr8.4:49127898-49127917 | None:intergenic | 35.0% | |
| TGTTTGATCTGTTTGTGGTA+TGG | + | chr8.4:49127837-49127856 | MS.gene38976:CDS | 35.0% | |
| TTATCCATACGACACTATCA+AGG | - | chr8.4:49128668-49128687 | None:intergenic | 35.0% | |
| !! | GGATTATTGATGGCAGTTTT+TGG | + | chr8.4:49128085-49128104 | MS.gene38976:CDS | 35.0% |
| AGAACAGTACCTATCCCATT+TGG | - | chr8.4:49128580-49128599 | None:intergenic | 40.0% | |
| AGTCGGGAGCTTGAAAATAA+CGG | + | chr8.4:49128126-49128145 | MS.gene38976:CDS | 40.0% | |
| GAAATTGGTAAAGATGCAGC+TGG | + | chr8.4:49127497-49127516 | MS.gene38976:CDS | 40.0% | |
| TGTTAGGTACCAAATGGGAT+AGG | + | chr8.4:49128568-49128587 | MS.gene38976:intron | 40.0% | |
| ! | AAATGGGATAGGTACTGTTC+TGG | + | chr8.4:49128579-49128598 | MS.gene38976:CDS | 40.0% |
| ! | AATGGGATAGGTACTGTTCT+GGG | + | chr8.4:49128580-49128599 | MS.gene38976:CDS | 40.0% |
| AAAGATGCAGCTGGAATTGC+TGG | + | chr8.4:49127506-49127525 | MS.gene38976:CDS | 45.0% | |
| GGATCAACGGAAATGTTCTC+AGG | + | chr8.4:49127786-49127805 | MS.gene38976:CDS | 45.0% | |
| TCTATGCGCCGAATGTTAGT+TGG | + | chr8.4:49128154-49128173 | MS.gene38976:CDS | 45.0% | |
| !! | GAACCCTTGATAGTGTCGTA+TGG | + | chr8.4:49128661-49128680 | MS.gene38976:CDS | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 49127467 | 49128687 | 49127467 | ID=MS.gene38976 |
| chr8.4 | mRNA | 49127467 | 49128687 | 49127467 | ID=MS.gene38976.t1;Parent=MS.gene38976 |
| chr8.4 | exon | 49127467 | 49127527 | 49127467 | ID=MS.gene38976.t1.exon1;Parent=MS.gene38976.t1 |
| chr8.4 | CDS | 49127467 | 49127527 | 49127467 | ID=cds.MS.gene38976.t1;Parent=MS.gene38976.t1 |
| chr8.4 | exon | 49127627 | 49127663 | 49127627 | ID=MS.gene38976.t1.exon2;Parent=MS.gene38976.t1 |
| chr8.4 | CDS | 49127627 | 49127663 | 49127627 | ID=cds.MS.gene38976.t1;Parent=MS.gene38976.t1 |
| chr8.4 | exon | 49127758 | 49127974 | 49127758 | ID=MS.gene38976.t1.exon3;Parent=MS.gene38976.t1 |
| chr8.4 | CDS | 49127758 | 49127974 | 49127758 | ID=cds.MS.gene38976.t1;Parent=MS.gene38976.t1 |
| chr8.4 | exon | 49128073 | 49128231 | 49128073 | ID=MS.gene38976.t1.exon4;Parent=MS.gene38976.t1 |
| chr8.4 | CDS | 49128073 | 49128231 | 49128073 | ID=cds.MS.gene38976.t1;Parent=MS.gene38976.t1 |
| chr8.4 | exon | 49128333 | 49128452 | 49128333 | ID=MS.gene38976.t1.exon5;Parent=MS.gene38976.t1 |
| chr8.4 | CDS | 49128333 | 49128452 | 49128333 | ID=cds.MS.gene38976.t1;Parent=MS.gene38976.t1 |
| chr8.4 | exon | 49128574 | 49128687 | 49128574 | ID=MS.gene38976.t1.exon6;Parent=MS.gene38976.t1 |
| chr8.4 | CDS | 49128574 | 49128687 | 49128574 | ID=cds.MS.gene38976.t1;Parent=MS.gene38976.t1 |
| Gene Sequence |
| Protein sequence |
