AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055908

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055908.t1 MTR_1g064230 98.214 280 5 0 1 280 1 280 0.0 549
MS.gene055908.t1 MTR_4g104470 50.739 203 76 2 81 280 119 300 6.21e-61 195
MS.gene055908.t1 MTR_3g075500 41.781 292 137 7 3 278 14 288 1.18e-59 191
MS.gene055908.t1 MTR_3g075500 40.659 273 129 7 3 259 14 269 1.41e-51 170
MS.gene055908.t1 MTR_3g075500 45.977 87 44 1 195 278 108 194 4.82e-17 79.3
MS.gene055908.t1 MTR_3g075500 43.662 71 40 0 79 149 201 271 1.09e-13 69.7
MS.gene055908.t1 MTR_7g106440 37.762 286 135 7 12 275 27 291 4.49e-49 165
MS.gene055908.t1 MTR_1g045510 38.119 202 104 2 74 275 103 283 7.69e-45 153
MS.gene055908.t1 MTR_1g056520 41.270 189 98 1 84 272 108 283 1.29e-44 153
MS.gene055908.t1 MTR_3g027140 36.111 252 127 6 27 272 12 235 8.58e-37 131
MS.gene055908.t1 MTR_4g070080 50.602 83 41 0 192 274 2 84 5.84e-23 91.7
MS.gene055908.t1 MTR_4g070080 40.541 74 44 0 85 158 7 80 7.97e-12 61.6
MS.gene055908.t1 MTR_4g070080 50.617 81 40 0 192 272 2 82 3.82e-22 90.5
MS.gene055908.t1 MTR_4g070080 40.541 74 44 0 85 158 7 80 1.95e-11 61.6
MS.gene055908.t1 MTR_4g070140 50.588 85 42 0 190 274 2 86 1.06e-20 87.4
MS.gene055908.t1 MTR_4g070140 43.243 74 42 0 85 158 9 82 3.48e-13 67.0
MS.gene055908.t1 MTR_4g109540 48.148 81 42 0 197 277 43 123 1.06e-20 89.4
MS.gene055908.t1 MTR_4g109540 41.667 84 49 0 81 164 39 122 2.00e-14 72.0
MS.gene055908.t1 MTR_4g070190 47.619 84 44 0 191 274 3 86 1.29e-20 86.7
MS.gene055908.t1 MTR_4g070190 41.892 74 43 0 85 158 9 82 5.84e-12 63.2
MS.gene055908.t1 MTR_7g013740 43.023 86 49 0 192 277 36 121 2.82e-20 85.1
MS.gene055908.t1 MTR_7g013740 41.250 80 47 0 85 164 41 120 2.63e-13 66.2
MS.gene055908.t1 MTR_2g022950 30.366 191 115 3 86 275 62 235 7.32e-20 87.4
MS.gene055908.t1 MTR_2g022950 30.366 191 115 3 86 275 62 235 9.09e-20 86.7
MS.gene055908.t1 MTR_3g084040 50.602 83 40 1 194 276 34 115 1.24e-19 83.6
MS.gene055908.t1 MTR_3g084040 42.466 73 41 1 85 157 37 108 8.69e-11 59.3
MS.gene055908.t1 MTR_4g109540 48.148 81 42 0 197 277 51 131 1.38e-19 86.3
MS.gene055908.t1 MTR_4g109540 38.043 92 49 1 81 164 39 130 6.09e-12 64.7
MS.gene055908.t1 MTR_3g025880 46.667 90 48 0 191 280 39 128 1.72e-19 88.2
MS.gene055908.t1 MTR_3g025880 39.744 78 47 0 81 158 41 118 1.72e-11 64.3
MS.gene055908.t1 MTR_2g022950 30.366 191 115 3 86 275 62 235 3.98e-19 86.7
MS.gene055908.t1 MTR_2g022950 30.570 193 114 6 82 270 153 329 4.92e-16 77.8
MS.gene055908.t1 MTR_2g097960 32.143 196 107 6 86 278 17 189 5.71e-19 86.3
MS.gene055908.t1 MTR_2g097960 27.273 231 134 7 70 279 94 311 2.78e-13 69.7
MS.gene055908.t1 MTR_3g101370 30.612 196 113 5 83 275 92 267 2.82e-18 83.2
MS.gene055908.t1 MTR_4g131970 28.899 218 128 7 70 279 153 351 3.45e-18 84.0
MS.gene055908.t1 MTR_4g131970 29.231 195 114 4 84 275 74 247 6.90e-17 80.5
MS.gene055908.t1 MTR_3g080130 43.902 82 46 0 196 277 36 117 4.67e-18 79.0
MS.gene055908.t1 MTR_3g080130 41.250 80 47 0 85 164 37 116 1.26e-14 69.7
MS.gene055908.t1 MTR_7g013730 40.476 84 50 0 197 280 41 124 8.94e-18 80.9
MS.gene055908.t1 MTR_7g013730 41.892 74 43 0 85 158 41 114 1.37e-13 69.3
MS.gene055908.t1 MTR_1g020080 28.638 213 135 5 70 280 176 373 1.33e-17 82.4
MS.gene055908.t1 MTR_1g020080 28.866 194 118 3 83 275 96 270 4.63e-16 77.8
MS.gene055908.t1 MTR_2g026180 29.101 189 121 5 85 272 5 181 1.50e-17 82.4
MS.gene055908.t1 MTR_3g101370 30.612 196 113 5 83 275 92 267 1.96e-17 82.0
MS.gene055908.t1 MTR_3g101370 28.037 214 136 6 70 280 172 370 2.39e-16 79.0
MS.gene055908.t1 MTR_1g020080 28.866 194 118 3 83 275 96 270 1.16e-16 79.0
MS.gene055908.t1 MTR_5g097580 29.630 189 118 5 85 272 7 181 1.26e-16 79.7
MS.gene055908.t1 MTR_5g097580 29.630 189 118 5 85 272 7 181 1.61e-16 79.3
MS.gene055908.t1 MTR_4g085540 29.897 194 111 3 86 279 36 204 3.18e-16 79.0
MS.gene055908.t1 MTR_4g085540 27.320 194 119 4 86 279 124 295 4.17e-16 78.6
MS.gene055908.t1 MTR_4g085540 27.041 196 129 4 86 279 215 398 3.07e-12 67.0
MS.gene055908.t1 MTR_3g103420 31.122 196 127 4 81 275 7 195 3.71e-16 77.8
MS.gene055908.t1 MTR_4g086600 29.082 196 122 3 86 280 118 297 3.90e-16 78.2
MS.gene055908.t1 MTR_4g086600 27.979 193 125 5 86 270 216 402 5.79e-12 65.9
MS.gene055908.t1 MTR_3g082650 24.873 197 116 4 85 278 19 186 1.38e-15 76.3
MS.gene055908.t1 MTR_3g055990 28.571 189 120 5 85 272 7 181 1.68e-15 76.6
MS.gene055908.t1 MTR_3g055990 28.571 189 120 5 85 272 7 181 1.71e-15 76.6
MS.gene055908.t1 MTR_1g019150 28.804 184 106 4 86 269 34 192 2.56e-15 76.3
MS.gene055908.t1 MTR_1g019150 25.000 196 121 4 86 279 122 293 2.61e-12 67.0
MS.gene055908.t1 MTR_7g102730 25.773 194 122 4 86 279 100 271 3.16e-15 75.9
MS.gene055908.t1 MTR_7g102730 26.606 218 142 6 63 278 172 373 4.16e-14 72.4
MS.gene055908.t1 MTR_4g124940 29.101 189 103 3 86 272 48 207 3.51e-15 75.1
MS.gene055908.t1 MTR_4g124940 30.256 195 123 3 85 270 132 322 7.99e-14 71.2
MS.gene055908.t1 MTR_5g030020 28.283 198 120 4 83 277 95 273 3.90e-15 74.7
MS.gene055908.t1 MTR_1g073690 29.146 199 123 6 85 276 7 194 2.45e-14 73.2
MS.gene055908.t1 MTR_7g105260 43.902 82 46 0 197 278 33 114 2.50e-14 68.9
MS.gene055908.t1 MTR_7g105260 34.951 103 57 1 85 187 33 125 2.50e-12 63.5
MS.gene055908.t1 MTR_1g097440 29.412 187 107 3 83 269 29 190 4.40e-14 72.4
MS.gene055908.t1 MTR_6g040070 29.231 195 114 5 86 279 17 188 5.89e-14 72.0
MS.gene055908.t1 MTR_6g040070 26.154 195 133 5 86 279 107 291 5.15e-13 69.3
MS.gene055908.t1 MTR_3g099590 26.271 236 146 7 41 272 48 259 7.93e-14 70.5
MS.gene055908.t1 MTR_3g095230 28.421 190 123 6 83 270 213 391 8.32e-14 71.6
MS.gene055908.t1 MTR_3g095230 40.964 83 47 2 78 159 311 392 4.36e-11 63.5
MS.gene055908.t1 MTR_3g095230 28.421 190 123 6 83 270 213 391 1.02e-13 71.2
MS.gene055908.t1 MTR_3g095230 40.964 83 47 2 78 159 311 392 4.69e-11 63.2
MS.gene055908.t1 MTR_8g092550 28.947 190 121 7 83 270 200 377 2.11e-13 70.5
MS.gene055908.t1 MTR_8g092550 40.964 83 47 2 78 159 297 378 7.80e-11 62.8
MS.gene055908.t1 MTR_1g061870 26.289 194 121 4 86 279 105 276 2.64e-13 70.1
MS.gene055908.t1 MTR_1g061870 28.061 196 123 5 86 279 196 375 7.37e-12 65.9
MS.gene055908.t1 MTR_3g109090 27.807 187 108 3 86 272 46 205 3.79e-13 69.3
MS.gene055908.t1 MTR_3g109090 26.154 195 130 2 86 270 131 321 6.87e-13 68.6
MS.gene055908.t1 MTR_6g040190 28.205 195 113 5 86 279 115 283 3.90e-13 69.7
MS.gene055908.t1 MTR_6g040190 28.426 197 126 7 86 279 202 386 3.86e-12 66.6
MS.gene055908.t1 MTR_3g109090 27.807 187 108 3 86 272 62 221 3.95e-13 69.3
MS.gene055908.t1 MTR_3g109090 26.154 195 130 2 86 270 147 337 7.23e-13 68.6
MS.gene055908.t1 MTR_3g084040 46.970 66 34 1 194 259 34 98 7.10e-13 63.9
MS.gene055908.t1 MTR_8g022050 28.270 237 142 6 47 270 118 339 8.64e-13 68.2
MS.gene055908.t1 MTR_8g022050 26.866 201 118 3 74 272 50 223 3.32e-12 66.6
MS.gene055908.t1 MTR_3g014000 42.857 77 37 1 206 275 40 116 1.12e-12 64.3
MS.gene055908.t1 MTR_3g029580 32.967 91 61 0 85 175 33 123 2.49e-12 63.2
MS.gene055908.t1 MTR_6g004810 22.335 197 121 4 85 278 46 213 3.01e-12 66.6
MS.gene055908.t1 MTR_4g104450 36.975 119 58 3 127 244 2 104 7.30e-12 61.2
MS.gene055908.t1 MTR_1g097280 31.452 124 68 3 81 201 26 135 9.10e-12 65.5
MS.gene055908.t1 MTR_3g102040 28.230 209 136 4 73 279 192 388 1.51e-11 64.7
MS.gene055908.t1 MTR_3g102040 26.904 197 118 4 86 280 114 286 2.18e-11 64.3
MS.gene055908.t1 MTR_4g063560 34.615 78 51 0 80 157 29 106 1.67e-11 60.5
MS.gene055908.t1 MTR_5g017280 27.749 191 110 5 83 272 3 166 1.91e-11 63.9
MS.gene055908.t1 MTR_5g017280 27.749 191 110 5 83 272 3 166 2.08e-11 63.9
MS.gene055908.t1 MTR_1g036430 26.263 198 116 7 81 254 159 350 2.10e-11 64.3
MS.gene055908.t1 MTR_2g096560 39.744 78 47 0 85 162 8 85 2.72e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055908.t1 AT2G37220 63.136 236 80 3 49 279 54 287 9.20e-93 276
MS.gene055908.t1 AT2G37220 45.238 84 46 0 85 168 205 288 5.81e-17 79.3
MS.gene055908.t1 AT4G24770 49.083 218 93 1 62 279 128 327 1.28e-59 192
MS.gene055908.t1 AT4G24770 49.083 218 93 1 62 279 128 327 1.28e-59 192
MS.gene055908.t1 AT5G50250 41.924 291 136 5 2 278 18 289 2.84e-59 191
MS.gene055908.t1 AT3G52380 45.078 193 97 3 85 277 117 300 5.91e-48 162
MS.gene055908.t1 AT1G60000 35.971 278 149 6 4 275 2 256 2.65e-45 154
MS.gene055908.t1 AT3G53460 58.101 179 56 6 16 177 14 190 8.99e-45 154
MS.gene055908.t1 AT3G53460 68.675 83 26 0 196 278 257 339 2.30e-33 124
MS.gene055908.t1 AT3G53460 48.810 84 43 0 85 168 258 341 8.37e-19 85.1
MS.gene055908.t1 AT3G53460 45.882 85 46 0 195 279 98 182 6.06e-13 68.6
MS.gene055908.t1 AT3G53460 58.101 179 56 6 16 177 14 190 8.99e-45 154
MS.gene055908.t1 AT3G53460 68.675 83 26 0 196 278 257 339 2.30e-33 124
MS.gene055908.t1 AT3G53460 48.810 84 43 0 85 168 258 341 8.37e-19 85.1
MS.gene055908.t1 AT3G53460 45.882 85 46 0 195 279 98 182 6.06e-13 68.6
MS.gene055908.t1 AT3G53460 58.101 179 56 6 16 177 14 190 8.99e-45 154
MS.gene055908.t1 AT3G53460 68.675 83 26 0 196 278 257 339 2.30e-33 124
MS.gene055908.t1 AT3G53460 48.810 84 43 0 85 168 258 341 8.37e-19 85.1
MS.gene055908.t1 AT3G53460 45.882 85 46 0 195 279 98 182 6.06e-13 68.6
MS.gene055908.t1 AT3G53460 52.500 200 55 7 16 177 14 211 5.95e-41 145
MS.gene055908.t1 AT3G53460 68.675 83 26 0 196 278 278 360 3.51e-33 124
MS.gene055908.t1 AT3G53460 48.810 84 43 0 85 168 279 362 9.71e-19 85.5
MS.gene055908.t1 AT3G52150 41.026 195 104 2 78 272 70 253 4.12e-40 140
MS.gene055908.t1 AT3G52150 41.026 195 104 2 78 272 70 253 4.12e-40 140
MS.gene055908.t1 AT2G35410 30.712 267 157 6 11 269 22 268 3.70e-29 112
MS.gene055908.t1 AT1G01080 35.263 190 102 3 86 269 110 284 1.59e-25 102
MS.gene055908.t1 AT1G01080 35.079 191 102 4 86 269 110 285 1.05e-24 100
MS.gene055908.t1 AT1G01080 35.503 169 101 2 86 254 110 270 4.83e-24 98.6
MS.gene055908.t1 AT3G23830 53.750 80 37 0 196 275 35 114 5.90e-23 92.0
MS.gene055908.t1 AT3G23830 40.000 85 49 1 85 167 36 120 3.13e-13 65.9
MS.gene055908.t1 AT3G23830 53.750 80 37 0 196 275 35 114 5.90e-23 92.0
MS.gene055908.t1 AT3G23830 40.000 85 49 1 85 167 36 120 3.13e-13 65.9
MS.gene055908.t1 AT4G13850 51.250 80 39 0 197 276 36 115 2.31e-22 90.1
MS.gene055908.t1 AT4G13850 40.000 80 48 0 85 164 36 115 3.33e-13 65.5
MS.gene055908.t1 AT4G13850 51.250 80 39 0 197 276 36 115 3.19e-22 90.5
MS.gene055908.t1 AT4G13850 40.000 85 49 1 85 167 36 120 2.10e-13 66.6
MS.gene055908.t1 AT4G13850 51.250 80 39 0 197 276 36 115 4.03e-22 90.5
MS.gene055908.t1 AT4G13850 40.000 85 49 1 85 167 36 120 2.56e-13 66.6
MS.gene055908.t1 AT4G13850 51.250 80 39 0 197 276 36 115 4.58e-22 90.5
MS.gene055908.t1 AT4G13850 40.000 85 49 1 85 167 36 120 2.84e-13 66.6
MS.gene055908.t1 AT2G21660 50.000 82 41 0 191 272 3 84 7.13e-21 87.0
MS.gene055908.t1 AT2G21660 41.892 74 43 0 85 158 9 82 3.17e-11 60.8
MS.gene055908.t1 AT2G21660 50.000 82 41 0 191 272 3 84 1.07e-20 87.0
MS.gene055908.t1 AT2G21660 41.892 74 43 0 85 158 9 82 4.31e-11 60.8
MS.gene055908.t1 AT3G16380 29.210 291 169 9 1 278 119 385 1.80e-19 88.2
MS.gene055908.t1 AT3G16380 30.412 194 112 5 86 279 114 284 1.83e-14 73.6
MS.gene055908.t1 AT4G14300 32.653 196 118 6 85 276 7 192 5.97e-19 86.3
MS.gene055908.t1 AT4G14300 32.653 196 118 6 85 276 7 192 5.97e-19 86.3
MS.gene055908.t1 AT5G61030 45.783 83 45 0 194 276 38 120 6.71e-19 85.1
MS.gene055908.t1 AT5G61030 44.595 74 41 0 85 158 41 114 2.14e-12 66.6
MS.gene055908.t1 AT5G61030 45.783 83 45 0 194 276 38 120 6.71e-19 85.1
MS.gene055908.t1 AT5G61030 44.595 74 41 0 85 158 41 114 2.14e-12 66.6
MS.gene055908.t1 AT4G39260 46.429 84 45 0 192 275 2 85 1.32e-18 79.0
MS.gene055908.t1 AT4G39260 39.189 74 45 0 85 158 7 80 4.54e-11 58.5
MS.gene055908.t1 AT5G40490 26.941 219 123 5 68 278 21 210 1.35e-18 85.5
MS.gene055908.t1 AT5G40490 34.653 101 63 1 83 183 129 226 9.27e-11 62.4
MS.gene055908.t1 AT5G19350 32.474 194 108 5 86 278 26 197 1.60e-18 85.1
MS.gene055908.t1 AT5G19350 25.000 196 132 4 82 270 114 301 2.44e-12 67.0
MS.gene055908.t1 AT5G19350 32.474 194 108 5 86 278 26 197 1.62e-18 85.1
MS.gene055908.t1 AT4G34110 28.866 194 116 4 86 279 126 297 3.04e-18 84.7
MS.gene055908.t1 AT4G34110 29.592 196 113 3 83 278 35 205 2.62e-17 82.0
MS.gene055908.t1 AT4G34110 26.087 207 139 4 75 279 206 400 8.18e-12 65.9
MS.gene055908.t1 AT1G34140 30.256 195 127 4 86 280 121 306 5.56e-18 83.6
MS.gene055908.t1 AT5G54900 30.583 206 114 7 82 279 152 336 6.63e-18 83.2
MS.gene055908.t1 AT5G54900 28.866 194 113 4 86 275 62 234 8.40e-17 80.1
MS.gene055908.t1 AT1G74230 48.101 79 40 1 194 272 32 109 1.59e-17 80.9
MS.gene055908.t1 AT1G74230 44.595 74 40 1 85 158 35 107 1.93e-11 63.5
MS.gene055908.t1 AT4G39260 45.679 81 44 0 192 272 2 82 2.35e-17 76.6
MS.gene055908.t1 AT2G33410 32.143 196 119 6 85 276 7 192 2.96e-17 81.3
MS.gene055908.t1 AT5G55550 27.128 188 128 4 85 272 7 185 4.23e-17 81.3
MS.gene055908.t1 AT5G55550 27.128 188 128 4 85 272 7 185 4.23e-17 81.3
MS.gene055908.t1 AT5G55550 27.128 188 128 4 85 272 7 185 4.23e-17 81.3
MS.gene055908.t1 AT5G55550 27.128 188 128 4 85 272 7 185 4.23e-17 81.3
MS.gene055908.t1 AT4G26650 26.804 194 124 5 85 272 13 194 4.72e-17 80.9
MS.gene055908.t1 AT4G26650 26.804 194 124 5 85 272 16 197 4.86e-17 80.9
MS.gene055908.t1 AT1G49600 32.524 206 112 5 74 278 115 294 5.62e-17 80.9
MS.gene055908.t1 AT1G49600 29.557 203 128 6 82 279 211 403 5.20e-12 66.2
MS.gene055908.t1 AT1G49600 32.524 206 112 5 74 278 115 294 5.62e-17 80.9
MS.gene055908.t1 AT1G49600 29.557 203 128 6 82 279 211 403 5.20e-12 66.2
MS.gene055908.t1 AT5G55550 27.128 188 128 4 85 272 7 185 5.64e-17 80.9
MS.gene055908.t1 AT5G55550 27.128 188 128 4 85 272 7 185 5.64e-17 80.9
MS.gene055908.t1 AT5G55550 27.128 188 128 4 85 272 7 185 5.64e-17 80.9
MS.gene055908.t1 AT5G55550 27.128 188 128 4 85 272 7 185 5.64e-17 80.9
MS.gene055908.t1 AT5G55550 27.128 188 128 4 85 272 7 185 5.64e-17 80.9
MS.gene055908.t1 AT4G39260 45.679 81 44 0 192 272 2 82 6.52e-17 76.6
MS.gene055908.t1 AT2G23350 29.897 194 111 3 86 279 48 216 6.78e-17 80.9
MS.gene055908.t1 AT2G23350 28.205 195 118 4 86 280 136 308 1.55e-15 77.0
MS.gene055908.t1 AT2G23350 30.000 200 118 5 86 279 227 410 5.23e-13 69.3
MS.gene055908.t1 AT1G47500 31.122 196 114 4 83 275 102 279 1.05e-16 79.0
MS.gene055908.t1 AT1G11650 29.843 191 114 3 86 275 64 235 1.08e-16 79.0
MS.gene055908.t1 AT3G19130 32.039 206 113 5 74 278 104 283 1.44e-16 79.7
MS.gene055908.t1 AT3G19130 27.184 206 136 5 82 280 200 398 4.74e-11 63.2
MS.gene055908.t1 AT1G49600 32.524 206 112 5 74 278 115 294 1.69e-16 79.3
MS.gene055908.t1 AT1G49600 29.412 204 129 6 82 280 211 404 2.85e-12 67.0
MS.gene055908.t1 AT1G54080 32.178 202 109 5 86 270 150 340 2.18e-16 79.0
MS.gene055908.t1 AT1G54080 27.228 202 116 4 74 272 51 224 4.84e-13 68.9
MS.gene055908.t1 AT1G11650 30.890 191 112 4 86 275 64 235 2.85e-16 78.6
MS.gene055908.t1 AT1G11650 28.774 212 127 6 72 279 147 338 5.77e-16 77.8
MS.gene055908.t1 AT1G17640 28.358 201 107 5 85 278 67 237 3.55e-16 78.2
MS.gene055908.t1 AT1G17640 28.358 201 107 5 85 278 67 237 3.55e-16 78.2
MS.gene055908.t1 AT1G17640 28.358 201 107 5 85 278 67 237 3.55e-16 78.2
MS.gene055908.t1 AT1G47500 31.122 196 114 4 83 275 102 279 4.02e-16 78.2
MS.gene055908.t1 AT1G47500 28.293 205 128 5 82 280 197 388 2.61e-14 72.8
MS.gene055908.t1 AT1G47490 30.102 196 116 4 83 275 100 277 6.60e-16 76.6
MS.gene055908.t1 AT5G40490 26.064 188 107 4 94 278 35 193 8.71e-16 77.0
MS.gene055908.t1 AT5G40490 34.653 101 63 1 83 183 112 209 5.92e-11 62.8
MS.gene055908.t1 AT1G71770 28.856 201 117 4 86 280 148 328 9.46e-16 77.4
MS.gene055908.t1 AT1G71770 28.922 204 130 6 77 279 235 424 2.65e-14 73.2
MS.gene055908.t1 AT1G71770 28.723 188 108 4 82 269 57 218 5.19e-13 69.3
MS.gene055908.t1 AT1G71770 28.856 201 117 4 86 280 148 328 9.46e-16 77.4
MS.gene055908.t1 AT1G71770 28.922 204 130 6 77 279 235 424 2.65e-14 73.2
MS.gene055908.t1 AT1G71770 28.723 188 108 4 82 269 57 218 5.19e-13 69.3
MS.gene055908.t1 AT5G06210 42.500 80 46 0 196 275 34 113 1.35e-15 72.8
MS.gene055908.t1 AT5G06210 37.838 74 46 0 85 158 35 108 8.01e-12 62.4
MS.gene055908.t1 AT3G26420 43.902 82 46 0 191 272 2 83 1.46e-15 74.7
MS.gene055908.t1 AT3G26420 35.714 84 54 0 79 162 2 85 3.96e-12 65.1
MS.gene055908.t1 AT1G47490 30.102 196 116 4 83 275 100 277 2.39e-15 75.9
MS.gene055908.t1 AT1G47490 27.451 204 131 6 82 280 195 386 5.43e-13 68.9
MS.gene055908.t1 AT1G18630 42.529 87 50 0 188 274 28 114 2.61e-15 72.0
MS.gene055908.t1 AT1G22760 30.457 197 111 6 86 279 138 311 3.71e-15 75.9
MS.gene055908.t1 AT1G22760 26.906 223 150 6 57 279 205 414 2.25e-13 70.5
MS.gene055908.t1 AT1G22760 27.411 197 117 4 82 278 47 217 2.17e-12 67.4
MS.gene055908.t1 AT5G47620 27.660 188 123 6 85 272 7 181 6.84e-15 74.7
MS.gene055908.t1 AT5G47620 27.660 188 123 6 85 272 7 181 6.84e-15 74.7
MS.gene055908.t1 AT5G47620 27.660 188 123 6 85 272 7 181 6.84e-15 74.7
MS.gene055908.t1 AT1G54080 31.553 206 109 6 86 270 150 344 1.28e-14 73.9
MS.gene055908.t1 AT1G54080 26.699 206 116 5 74 272 51 228 2.40e-11 63.9
MS.gene055908.t1 AT5G09880 28.218 202 126 6 73 270 154 340 1.53e-14 73.9
MS.gene055908.t1 AT3G07810 29.293 198 117 6 81 272 3 183 1.68e-14 73.6
MS.gene055908.t1 AT3G07810 29.293 198 117 6 81 272 3 183 2.10e-14 73.2
MS.gene055908.t1 AT4G27000 29.016 193 113 4 86 275 82 253 2.46e-14 72.8
MS.gene055908.t1 AT4G27000 27.228 202 126 4 82 279 171 355 2.99e-13 69.7
MS.gene055908.t1 AT3G13224 28.061 196 112 6 69 261 8 177 2.49e-14 71.2
MS.gene055908.t1 AT3G13224 27.273 209 123 6 69 274 8 190 3.03e-14 72.4
MS.gene055908.t1 AT3G13224 26.289 194 118 4 84 274 10 181 3.66e-14 72.0
MS.gene055908.t1 AT3G08000 41.975 81 47 0 197 277 42 122 3.72e-14 68.6
MS.gene055908.t1 AT3G08000 38.298 94 51 1 85 171 42 135 3.31e-12 63.2
MS.gene055908.t1 AT1G49760 26.804 194 120 4 86 279 135 306 4.51e-14 72.4
MS.gene055908.t1 AT1G49760 28.571 196 126 4 86 279 226 409 2.48e-12 67.4
MS.gene055908.t1 AT1G49760 26.804 194 120 4 86 279 135 306 4.51e-14 72.4
MS.gene055908.t1 AT1G49760 28.571 196 126 4 86 279 226 409 2.48e-12 67.4
MS.gene055908.t1 AT4G36960 29.851 201 109 6 83 278 2 175 1.15e-13 70.9
MS.gene055908.t1 AT4G36960 29.851 201 109 6 83 278 2 175 1.15e-13 70.9
MS.gene055908.t1 AT4G13860 45.946 74 40 0 196 269 3 76 2.65e-13 64.7
MS.gene055908.t1 AT4G13860 44.595 74 41 0 85 158 4 77 3.85e-11 58.9
MS.gene055908.t1 AT5G47620 26.087 207 124 6 85 272 7 203 2.92e-13 69.7
MS.gene055908.t1 AT1G17370 28.511 235 141 7 47 270 110 328 5.05e-13 68.9
MS.gene055908.t1 AT1G17370 26.866 201 118 3 74 272 42 215 1.50e-12 67.8
MS.gene055908.t1 AT3G14100 28.319 226 125 5 47 255 115 320 6.91e-13 68.6
MS.gene055908.t1 AT3G14100 28.218 202 114 4 74 272 47 220 7.95e-13 68.6
MS.gene055908.t1 AT1G17370 27.848 237 143 6 47 270 110 331 1.07e-12 68.2
MS.gene055908.t1 AT1G17370 26.866 201 118 3 74 272 42 215 1.44e-12 67.8
MS.gene055908.t1 AT4G09040 27.041 196 125 4 85 279 35 213 1.23e-12 66.6
MS.gene055908.t1 AT4G09040 26.020 196 127 3 85 279 95 273 1.48e-12 67.0
MS.gene055908.t1 AT4G39260 44.776 67 37 0 192 258 2 68 1.78e-12 63.2
MS.gene055908.t1 AT1G60650 36.709 79 50 0 195 273 11 89 2.82e-12 66.2
MS.gene055908.t1 AT1G60650 36.709 79 50 0 195 273 11 89 2.82e-12 66.2
MS.gene055908.t1 AT5G47320 41.250 80 47 0 197 276 32 111 4.07e-12 64.7
MS.gene055908.t1 AT1G48920 28.646 192 122 7 77 264 290 470 5.31e-12 66.2
MS.gene055908.t1 AT2G36660 27.717 184 108 4 86 269 26 184 1.06e-11 65.5
MS.gene055908.t1 AT5G59865 40.000 85 49 1 194 278 24 106 4.11e-11 59.3
MS.gene055908.t1 AT3G46020 39.474 76 46 0 197 272 8 83 4.19e-11 58.9
MS.gene055908.t1 AT4G16280 27.957 186 112 5 74 259 110 273 6.79e-11 62.8

Find 79 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAACAGAGGAAAAGGAAAA+AGG 0.287951 1.1:-48538549 None:intergenic
CATGCTTACCGCGCCATCTA+AGG 0.295165 1.1:-48539893 None:intergenic
ACTGGAAGAAGCAGGGGATT+TGG 0.326987 1.1:+48539017 MS.gene055908:CDS
AGTGGAAGATCTAGAGGATT+TGG 0.327784 1.1:+48539823 MS.gene055908:CDS
TTCGGTGAGAATCCTCGTTT+TGG 0.361312 1.1:+48539640 MS.gene055908:CDS
TTCATGTTGGTAACCTTGCT+TGG 0.366467 1.1:+48539719 MS.gene055908:CDS
TCATGTTGGTAACCTTGCTT+GGG 0.376247 1.1:+48539720 MS.gene055908:CDS
ACGAGGATTCTCACCGAAAC+GGG 0.385758 1.1:-48539635 None:intergenic
CATCAAAGGTATCTTCTTCC+TGG 0.389538 1.1:-48538638 None:intergenic
AATCCTCAAAATTGACGCTT+TGG 0.396059 1.1:-48540220 None:intergenic
TGCTTGGGGTGTTGACAACT+TGG 0.399190 1.1:+48539735 MS.gene055908:CDS
CGTAGTGAGAACTCCCGTTT+CGG 0.401771 1.1:+48539622 MS.gene055908:CDS
AGTGCTATTCGAACCTTAGA+TGG 0.414306 1.1:+48539880 MS.gene055908:CDS
AGGTTTGAAATTAGGGTTGA+GGG 0.430777 1.1:-48538529 None:intergenic
TGGTGAACAAGGACAAGTTT+TGG 0.432362 1.1:+48539774 MS.gene055908:CDS
CGCTTTGGTCTACTATCGGC+TGG 0.447563 1.1:-48540205 None:intergenic
GTGATTTATGATAAGACTAC+TGG 0.448929 1.1:+48538999 MS.gene055908:CDS
TTGGCACTTGAGTCATTGTT+TGG 0.449309 1.1:+48539754 MS.gene055908:CDS
CCAACAAACAACCTCTGGTT+AGG 0.451368 1.1:-48538687 None:intergenic
ACGAAGAGAAACAGAGGAAA+AGG 0.456325 1.1:-48538556 None:intergenic
CTATCTGAAGAACCACCTCT+TGG 0.469164 1.1:-48539685 None:intergenic
CCTAACCAGAGGTTGTTTGT+TGG 0.469968 1.1:+48538687 MS.gene055908:CDS
GGAGTGAAGAGAAACATTGA+GGG 0.482925 1.1:-48538497 None:intergenic
CTCTGGTTAGGAGAGTAACT+AGG 0.488332 1.1:-48538675 None:intergenic
AACGAGGATTCTCACCGAAA+CGG 0.490069 1.1:-48539636 None:intergenic
ATAAGACTACTGGAAGAAGC+AGG 0.490077 1.1:+48539009 MS.gene055908:CDS
GGGAGTGAAGAGAAACATTG+AGG 0.496008 1.1:-48538498 None:intergenic
TAGGGTTGAGGGAAAGAGAA+GGG 0.515631 1.1:-48538518 None:intergenic
AAACGCTGGGAATGTTGAAA+TGG 0.516801 1.1:+48538758 MS.gene055908:CDS
AAGCAAAGGTAATCTATGAC+AGG 0.517595 1.1:+48539797 MS.gene055908:CDS
GTAATCTATGACAGGGAAAG+TGG 0.519710 1.1:+48539805 MS.gene055908:CDS
TTAGGGTTGAGGGAAAGAGA+AGG 0.521062 1.1:-48538519 None:intergenic
GCGGCTGCTCAGCAGTTGAA+TGG 0.528626 1.1:+48539074 MS.gene055908:CDS
GAAGAAGATACCTTTGATGA+TGG 0.530298 1.1:+48538642 MS.gene055908:CDS
TTCTCACTACGAGGAGGAGG+TGG 0.533042 1.1:-48539610 None:intergenic
TTGACGCTTTGGTCTACTAT+CGG 0.534269 1.1:-48540209 None:intergenic
TCTGAAGAACCACCTCTTGG+AGG 0.535648 1.1:-48539682 None:intergenic
TACTATCGGCTGGTGAGACT+CGG 0.538240 1.1:-48540195 None:intergenic
GGTTACCAACAAACAACCTC+TGG 0.538562 1.1:-48538692 None:intergenic
TCACTACGAGGAGGAGGTGG+TGG 0.538930 1.1:-48539607 None:intergenic
GGAAATTTACAGGTGGTGGA+TGG 0.547630 1.1:+48539559 MS.gene055908:intron
TCTGGTTAGGAGAGTAACTA+GGG 0.549336 1.1:-48538674 None:intergenic
CGATGGGAAATAGACAAAGA+TGG 0.554421 1.1:-48538579 None:intergenic
CACTGTCAACACTGAAAGGA+AGG 0.558406 1.1:-48538713 None:intergenic
GAAGAGTGATGGAAGTACTA+AGG 0.558474 1.1:-48538463 None:intergenic
TGTTTCTTCTGAATTTGACC+AGG 0.566886 1.1:+48538620 MS.gene055908:CDS
AAGGTTTGAAATTAGGGTTG+AGG 0.569323 1.1:-48538530 None:intergenic
GAGTCATTGTTTGGTGAACA+AGG 0.574217 1.1:+48539763 MS.gene055908:CDS
GACTTTCAGTAGCGCTGATG+AGG 0.578722 1.1:+48539852 MS.gene055908:CDS
AGAGAATTGAGAGTGAATGC+TGG 0.579689 1.1:+48539583 MS.gene055908:CDS
TTTGGTGGTGATCGTTCTAG+AGG 0.580010 1.1:+48539658 MS.gene055908:CDS
TGAGCACTGTCAACACTGAA+AGG 0.583654 1.1:-48538717 None:intergenic
AGGGAAAGTGGAAGATCTAG+AGG 0.591000 1.1:+48539817 MS.gene055908:CDS
GGTATCATCACCATCATCAA+AGG 0.592983 1.1:-48538652 None:intergenic
TGTTACTATGTCTTCTGCTG+CGG 0.604372 1.1:+48539043 MS.gene055908:CDS
TAAGACTACTGGAAGAAGCA+GGG 0.613089 1.1:+48539010 MS.gene055908:CDS
CAACACGAGAAATGAAACGA+TGG 0.613411 1.1:-48538596 None:intergenic
AACACGAGAAATGAAACGAT+GGG 0.615472 1.1:-48538595 None:intergenic
GAGTTCTCACTACGAGGAGG+AGG 0.621502 1.1:-48539613 None:intergenic
TGGGAATGTTGAAATGGTTG+AGG 0.621531 1.1:+48538764 MS.gene055908:CDS
TTCTGCTGCGGAAGTTGAAG+CGG 0.622597 1.1:+48539055 MS.gene055908:CDS
AGTTGTCAACACCCCAAGCA+AGG 0.628607 1.1:-48539732 None:intergenic
CATGTTGGTAACCTTGCTTG+GGG 0.635880 1.1:+48539721 MS.gene055908:CDS
GGATGTTGCAGAGGTAGACA+TGG 0.636407 1.1:-48538442 None:intergenic
AGCAAAGGTAATCTATGACA+GGG 0.637693 1.1:+48539798 MS.gene055908:CDS
AAGACTACTGGAAGAAGCAG+GGG 0.638733 1.1:+48539011 MS.gene055908:CDS
AGCGACAACCGTGTTCATGT+TGG 0.646678 1.1:+48539706 MS.gene055908:CDS
AAGTACTAAGGATGTTGCAG+AGG 0.648638 1.1:-48538451 None:intergenic
TCTAGAGGTCCTCCAAGAGG+TGG 0.648673 1.1:+48539673 MS.gene055908:CDS
AGATGGACGAAGAGAAACAG+AGG 0.649696 1.1:-48538562 None:intergenic
CAAGGTTACCAACATGAACA+CGG 0.652532 1.1:-48539714 None:intergenic
GAGTGAAGAGAAACATTGAG+GGG 0.655321 1.1:-48538496 None:intergenic
CGTTCTAGAGGTCCTCCAAG+AGG 0.680337 1.1:+48539670 MS.gene055908:CDS
TATTCGAACCTTAGATGGCG+CGG 0.688538 1.1:+48539885 MS.gene055908:CDS
CTAGTTACTCTCCTAACCAG+AGG 0.690578 1.1:+48538676 MS.gene055908:CDS
GAACGATCACCACCAAAACG+AGG 0.713335 1.1:-48539652 None:intergenic
CGGGAGTTCTCACTACGAGG+AGG 0.715956 1.1:-48539616 None:intergenic
AAACGGGAGTTCTCACTACG+AGG 0.720979 1.1:-48539619 None:intergenic
CTGGTTAGGAGAGTAACTAG+GGG 0.742322 1.1:-48538673 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTTCATAATTAAAAAAATT+AGG - chr1.1:48540017-48540036 None:intergenic 10.0%
!!! CTAATTTTTTTAATTATGAA+AGG + chr1.1:48540015-48540034 MS.gene055908:intron 10.0%
!! TGATAATTTATTATAAAGTC+TGG + chr1.1:48538834-48538853 MS.gene055908:intron 15.0%
!! TTAATAAAATACCTATACAT+GGG - chr1.1:48539364-48539383 None:intergenic 15.0%
!! TTTAATAAAATACCTATACA+TGG - chr1.1:48539365-48539384 None:intergenic 15.0%
!!! ATAGGTATTTTATTAAAATG+TGG + chr1.1:48539368-48539387 MS.gene055908:intron 15.0%
!!! ATGTTTTGTTTTTAGAATTT+CGG + chr1.1:48539140-48539159 MS.gene055908:intron 15.0%
!!! ATTTTATTAAAATGTGGATA+AGG + chr1.1:48539374-48539393 MS.gene055908:intron 15.0%
!!! CCAATAATTTTAATCAAAAA+GGG - chr1.1:48538882-48538901 None:intergenic 15.0%
!!! CCTTTTTGATTAAAATTATT+GGG + chr1.1:48538880-48538899 MS.gene055908:intron 15.0%
!!! TTTTATTAAAATGTGGATAA+GGG + chr1.1:48539375-48539394 MS.gene055908:intron 15.0%
!! AGATTATGAGTTAAAATTCA+GGG + chr1.1:48539989-48540008 MS.gene055908:intron 20.0%
!! CTTAGATGTTATAAACAAAA+TGG - chr1.1:48539528-48539547 None:intergenic 20.0%
!! TAATAAAATACCTATACATG+GGG - chr1.1:48539363-48539382 None:intergenic 20.0%
!! TAGATTATGAGTTAAAATTC+AGG + chr1.1:48539988-48540007 MS.gene055908:intron 20.0%
!! TATATTATGTATTTAACCAC+TGG + chr1.1:48540123-48540142 MS.gene055908:intron 20.0%
!! TGATTAAAATTATTGGGTTA+AGG + chr1.1:48538886-48538905 MS.gene055908:intron 20.0%
!! TTTATTAAAATGTGGATAAG+GGG + chr1.1:48539376-48539395 MS.gene055908:intron 20.0%
!!! ATTATTTGCTATGTTATGAA+TGG + chr1.1:48539496-48539515 MS.gene055908:intron 20.0%
!!! CATTTTGTTTATAACATCTA+AGG + chr1.1:48539526-48539545 MS.gene055908:intron 20.0%
!!! CCCAATAATTTTAATCAAAA+AGG - chr1.1:48538883-48538902 None:intergenic 20.0%
!!! CCCTTTTTGATTAAAATTAT+TGG + chr1.1:48538879-48538898 MS.gene055908:intron 20.0%
!!! TTATAAAGTCTGGTTTTTTA+TGG + chr1.1:48538844-48538863 MS.gene055908:intron 20.0%
! AAACATTCTTGGAAATTTAC+AGG + chr1.1:48539549-48539568 MS.gene055908:intron 25.0%
! AATAAAATACCTATACATGG+GGG - chr1.1:48539362-48539381 None:intergenic 25.0%
! AATTAAAACATGTTTGTGTG+AGG - chr1.1:48539276-48539295 None:intergenic 25.0%
! ATTATTGGGTTAAGGTTAAT+TGG + chr1.1:48538894-48538913 MS.gene055908:intron 25.0%
! TTGAATAGTTACAAGTAGTT+AGG + chr1.1:48539332-48539351 MS.gene055908:intron 25.0%
!! AAGGAAAAAGGTTTGAAATT+AGG - chr1.1:48538540-48538559 None:intergenic 25.0%
!! AGGAAAAAGGTTTGAAATTA+GGG - chr1.1:48538539-48538558 None:intergenic 25.0%
!! CCAATAATTTTCATCCAAAA+GGG - chr1.1:48538809-48538828 None:intergenic 25.0%
!! CCTTTTGGATGAAAAATAAT+GGG + chr1.1:48538921-48538940 MS.gene055908:intron 25.0%
!! CCTTTTGGATGAAAATTATT+GGG + chr1.1:48538807-48538826 MS.gene055908:intron 25.0%
!! TAGTTGTTTGAAATTGAGTA+TGG + chr1.1:48539170-48539189 MS.gene055908:intron 25.0%
!!! CCATTATTTTTCATCCAAAA+GGG - chr1.1:48538923-48538942 None:intergenic 25.0%
!!! CTGGTTTTTTATGGTTTAAT+TGG + chr1.1:48538853-48538872 MS.gene055908:intron 25.0%
!!! TTTTTTTTGTAGGACTTGAA+TGG + chr1.1:48540163-48540182 MS.gene055908:intron 25.0%
AACATCTAAGGAAACATTCT+TGG + chr1.1:48539538-48539557 MS.gene055908:intron 30.0%
GGTTTGTGGTGAATTTAATT+GGG + chr1.1:48538942-48538961 MS.gene055908:intron 30.0%
GTAACTCTTATATCTGAGTT+TGG + chr1.1:48539435-48539454 MS.gene055908:intron 30.0%
GTGATTTATGATAAGACTAC+TGG + chr1.1:48538999-48539018 MS.gene055908:CDS 30.0%
! CCCAATAATTTTCATCCAAA+AGG - chr1.1:48538810-48538829 None:intergenic 30.0%
! CCCTTTTGGATGAAAAATAA+TGG + chr1.1:48538920-48538939 MS.gene055908:intron 30.0%
! CCCTTTTGGATGAAAATTAT+TGG + chr1.1:48538806-48538825 MS.gene055908:intron 30.0%
! TCTTTACAAAGATACCCTTT+TGG + chr1.1:48538792-48538811 MS.gene055908:intron 30.0%
!! CCCATTATTTTTCATCCAAA+AGG - chr1.1:48538924-48538943 None:intergenic 30.0%
!! GATGAAAAATAATGGGTTTG+TGG + chr1.1:48538928-48538947 MS.gene055908:intron 30.0%
!!! CATCATCTGGTTTTTTTTGT+AGG + chr1.1:48540153-48540172 MS.gene055908:intron 30.0%
AACACGAGAAATGAAACGAT+GGG - chr1.1:48538598-48538617 None:intergenic 35.0%
AAGCAAAGGTAATCTATGAC+AGG + chr1.1:48539797-48539816 MS.gene055908:CDS 35.0%
ACAATGAGTAGATCTGGATA+AGG - chr1.1:48539417-48539436 None:intergenic 35.0%
ACCTGCATCATATTGAATAG+AGG - chr1.1:48539928-48539947 None:intergenic 35.0%
AGAGTTACAATGAGTAGATC+TGG - chr1.1:48539423-48539442 None:intergenic 35.0%
AGCAAAGGTAATCTATGACA+GGG + chr1.1:48539798-48539817 MS.gene055908:CDS 35.0%
CATTCTTGGAAATTTACAGG+TGG + chr1.1:48539552-48539571 MS.gene055908:intron 35.0%
GAAACAGAGGAAAAGGAAAA+AGG - chr1.1:48538552-48538571 None:intergenic 35.0%
GAAGAAGATACCTTTGATGA+TGG + chr1.1:48538642-48538661 MS.gene055908:CDS 35.0%
GCATCATATTGAATAGAGGA+GGG - chr1.1:48539924-48539943 None:intergenic 35.0%
GCTGAAATTTGTGTTCTTTC+AGG + chr1.1:48538977-48538996 MS.gene055908:intron 35.0%
GGGTTTGTGGTGAATTTAAT+TGG + chr1.1:48538941-48538960 MS.gene055908:intron 35.0%
TCAACTCTTCATGTGTGAAT+TGG + chr1.1:48540087-48540106 MS.gene055908:intron 35.0%
TCCTCTATTCAATATGATGC+AGG + chr1.1:48539924-48539943 MS.gene055908:intron 35.0%
TGCATCATATTGAATAGAGG+AGG - chr1.1:48539925-48539944 None:intergenic 35.0%
TGCTATGTTATGAATGGCTT+TGG + chr1.1:48539502-48539521 MS.gene055908:intron 35.0%
TGTGAGGAAATTGTGTACTA+TGG - chr1.1:48539260-48539279 None:intergenic 35.0%
TGTGGTGAATTTAATTGGGT+TGG + chr1.1:48538946-48538965 MS.gene055908:intron 35.0%
TGTTTCTTCTGAATTTGACC+AGG + chr1.1:48538620-48538639 MS.gene055908:CDS 35.0%
! AAGGTTTGAAATTAGGGTTG+AGG - chr1.1:48538533-48538552 None:intergenic 35.0%
! AGGTTAATTGGATACCCTTT+TGG + chr1.1:48538906-48538925 MS.gene055908:intron 35.0%
! AGGTTTGAAATTAGGGTTGA+GGG - chr1.1:48538532-48538551 None:intergenic 35.0%
!! CTGAGATTTTTGAAAACGCT+GGG + chr1.1:48538745-48538764 MS.gene055908:CDS 35.0%
AAACGCTGGGAATGTTGAAA+TGG + chr1.1:48538758-48538777 MS.gene055908:CDS 40.0%
AAGTACTAAGGATGTTGCAG+AGG - chr1.1:48538454-48538473 None:intergenic 40.0%
ACGAAGAGAAACAGAGGAAA+AGG - chr1.1:48538559-48538578 None:intergenic 40.0%
AGAGAATTGAGAGTGAATGC+TGG + chr1.1:48539583-48539602 MS.gene055908:CDS 40.0%
AGTGGAAGATCTAGAGGATT+TGG + chr1.1:48539823-48539842 MS.gene055908:CDS 40.0%
ATAAGACTACTGGAAGAAGC+AGG + chr1.1:48539009-48539028 MS.gene055908:CDS 40.0%
CAACACGAGAAATGAAACGA+TGG - chr1.1:48538599-48538618 None:intergenic 40.0%
CAAGGTTACCAACATGAACA+CGG - chr1.1:48539717-48539736 None:intergenic 40.0%
CGATGGGAAATAGACAAAGA+TGG - chr1.1:48538582-48538601 None:intergenic 40.0%
GACGCAAAACTACAACTCAA+TGG - chr1.1:48540066-48540085 None:intergenic 40.0%
GAGTGAAGAGAAACATTGAG+GGG - chr1.1:48538499-48538518 None:intergenic 40.0%
GGAGTGAAGAGAAACATTGA+GGG - chr1.1:48538500-48538519 None:intergenic 40.0%
GGTATCATCACCATCATCAA+AGG - chr1.1:48538655-48538674 None:intergenic 40.0%
GTAATCTATGACAGGGAAAG+TGG + chr1.1:48539805-48539824 MS.gene055908:CDS 40.0%
TAAGACTACTGGAAGAAGCA+GGG + chr1.1:48539010-48539029 MS.gene055908:CDS 40.0%
TATGAAAGGGTTAAGTCCCT+TGG + chr1.1:48540029-48540048 MS.gene055908:intron 40.0%
TCTGGTTAGGAGAGTAACTA+GGG - chr1.1:48538677-48538696 None:intergenic 40.0%
TCTTGGAAATTTACAGGTGG+TGG + chr1.1:48539555-48539574 MS.gene055908:intron 40.0%
TGGGAATGTTGAAATGGTTG+AGG + chr1.1:48538764-48538783 MS.gene055908:CDS 40.0%
TGTGGATAAGGGGATAACTA+TGG + chr1.1:48539386-48539405 MS.gene055908:intron 40.0%
TGTTACTATGTCTTCTGCTG+CGG + chr1.1:48539043-48539062 MS.gene055908:CDS 40.0%
TTAGGTATACCCCCATGTAT+AGG + chr1.1:48539350-48539369 MS.gene055908:intron 40.0%
TTGACGCTTTGGTCTACTAT+CGG - chr1.1:48540212-48540231 None:intergenic 40.0%
TTGGCACTTGAGTCATTGTT+TGG + chr1.1:48539754-48539773 MS.gene055908:CDS 40.0%
! AGTGCTATTCGAACCTTAGA+TGG + chr1.1:48539880-48539899 MS.gene055908:CDS 40.0%
! GAAACATTGAGGGGAGTTTT+TGG - chr1.1:48538490-48538509 None:intergenic 40.0%
! GAGTCATTGTTTGGTGAACA+AGG + chr1.1:48539763-48539782 MS.gene055908:CDS 40.0%
! TGGTGAACAAGGACAAGTTT+TGG + chr1.1:48539774-48539793 MS.gene055908:CDS 40.0%
!! AATGGCTTTGAATCCTCCAA+GGG - chr1.1:48540048-48540067 None:intergenic 40.0%
!! CATCAAAGGTATCTTCTTCC+TGG - chr1.1:48538641-48538660 None:intergenic 40.0%
!! GAAGAGTGATGGAAGTACTA+AGG - chr1.1:48538466-48538485 None:intergenic 40.0%
!! GCTGAGATTTTTGAAAACGC+TGG + chr1.1:48538744-48538763 MS.gene055908:CDS 40.0%
!! TCATGTTGGTAACCTTGCTT+GGG + chr1.1:48539720-48539739 MS.gene055908:CDS 40.0%
!! TTCATGTTGGTAACCTTGCT+TGG + chr1.1:48539719-48539738 MS.gene055908:CDS 40.0%
!!! AGGACAAGTTTTGGAAGCAA+AGG + chr1.1:48539783-48539802 MS.gene055908:CDS 40.0%
!!! GAGTTTTTGGTGAAGAGTGA+TGG - chr1.1:48538477-48538496 None:intergenic 40.0%
AACGAGGATTCTCACCGAAA+CGG - chr1.1:48539639-48539658 None:intergenic 45.0%
AAGACTACTGGAAGAAGCAG+GGG + chr1.1:48539011-48539030 MS.gene055908:CDS 45.0%
AGATGGACGAAGAGAAACAG+AGG - chr1.1:48538565-48538584 None:intergenic 45.0%
AGGGAAAGTGGAAGATCTAG+AGG + chr1.1:48539817-48539836 MS.gene055908:CDS 45.0%
CACTGGAGTCTTACATCATC+TGG + chr1.1:48540140-48540159 MS.gene055908:intron 45.0%
CACTGTCAACACTGAAAGGA+AGG - chr1.1:48538716-48538735 None:intergenic 45.0%
CAGATGATGTAAGACTCCAG+TGG - chr1.1:48540142-48540161 None:intergenic 45.0%
CCAACAAACAACCTCTGGTT+AGG - chr1.1:48538690-48538709 None:intergenic 45.0%
CCTAACCAGAGGTTGTTTGT+TGG + chr1.1:48538687-48538706 MS.gene055908:CDS 45.0%
CTAGTTACTCTCCTAACCAG+AGG + chr1.1:48538676-48538695 MS.gene055908:CDS 45.0%
CTATCTGAAGAACCACCTCT+TGG - chr1.1:48539688-48539707 None:intergenic 45.0%
CTCTGGTTAGGAGAGTAACT+AGG - chr1.1:48538678-48538697 None:intergenic 45.0%
CTGGTTAGGAGAGTAACTAG+GGG - chr1.1:48538676-48538695 None:intergenic 45.0%
GGGAGTGAAGAGAAACATTG+AGG - chr1.1:48538501-48538520 None:intergenic 45.0%
GGTTACCAACAAACAACCTC+TGG - chr1.1:48538695-48538714 None:intergenic 45.0%
TAGGGTTGAGGGAAAGAGAA+GGG - chr1.1:48538521-48538540 None:intergenic 45.0%
TATTCGAACCTTAGATGGCG+CGG + chr1.1:48539885-48539904 MS.gene055908:CDS 45.0%
TTAGGGTTGAGGGAAAGAGA+AGG - chr1.1:48538522-48538541 None:intergenic 45.0%
! TGAGCACTGTCAACACTGAA+AGG - chr1.1:48538720-48538739 None:intergenic 45.0%
! TTCGGTGAGAATCCTCGTTT+TGG + chr1.1:48539640-48539659 MS.gene055908:CDS 45.0%
!! CAATGGCTTTGAATCCTCCA+AGG - chr1.1:48540049-48540068 None:intergenic 45.0%
!! CATGTTGGTAACCTTGCTTG+GGG + chr1.1:48539721-48539740 MS.gene055908:CDS 45.0%
!! GGAAATTTACAGGTGGTGGA+TGG + chr1.1:48539559-48539578 MS.gene055908:intron 45.0%
!! TTTGGTGGTGATCGTTCTAG+AGG + chr1.1:48539658-48539677 MS.gene055908:CDS 45.0%
!! TTTCATAATTAAAAAAATTA+GGG - chr1.1:48540016-48540035 None:intergenic 5.0%
!!! TAATTTTTTTAATTATGAAA+GGG + chr1.1:48540016-48540035 MS.gene055908:intron 5.0%
!!! TTTTAATTTAATTTAATCAA+TGG + chr1.1:48539288-48539307 MS.gene055908:intron 5.0%
AAACGGGAGTTCTCACTACG+AGG - chr1.1:48539622-48539641 None:intergenic 50.0%
ACGAGGATTCTCACCGAAAC+GGG - chr1.1:48539638-48539657 None:intergenic 50.0%
ACTGGAAGAAGCAGGGGATT+TGG + chr1.1:48539017-48539036 MS.gene055908:CDS 50.0%
AGCGACAACCGTGTTCATGT+TGG + chr1.1:48539706-48539725 MS.gene055908:CDS 50.0%
AGTTGTCAACACCCCAAGCA+AGG - chr1.1:48539735-48539754 None:intergenic 50.0%
CGTAGTGAGAACTCCCGTTT+CGG + chr1.1:48539622-48539641 MS.gene055908:CDS 50.0%
GAAAGGGTTAAGTCCCTTGG+AGG + chr1.1:48540032-48540051 MS.gene055908:intron 50.0%
GAACGATCACCACCAAAACG+AGG - chr1.1:48539655-48539674 None:intergenic 50.0%
TCTGAAGAACCACCTCTTGG+AGG - chr1.1:48539685-48539704 None:intergenic 50.0%
TTCTGCTGCGGAAGTTGAAG+CGG + chr1.1:48539055-48539074 MS.gene055908:CDS 50.0%
! GGTGAGAATCCTCGTTTTGG+TGG + chr1.1:48539643-48539662 MS.gene055908:CDS 50.0%
! TACTATCGGCTGGTGAGACT+CGG - chr1.1:48540198-48540217 None:intergenic 50.0%
!! GACTTTCAGTAGCGCTGATG+AGG + chr1.1:48539852-48539871 MS.gene055908:CDS 50.0%
!! TGCTTGGGGTGTTGACAACT+TGG + chr1.1:48539735-48539754 MS.gene055908:CDS 50.0%
CATGCTTACCGCGCCATCTA+AGG - chr1.1:48539896-48539915 None:intergenic 55.0%
CGCTTTGGTCTACTATCGGC+TGG - chr1.1:48540208-48540227 None:intergenic 55.0%
GAGTTCTCACTACGAGGAGG+AGG - chr1.1:48539616-48539635 None:intergenic 55.0%
TCTAGAGGTCCTCCAAGAGG+TGG + chr1.1:48539673-48539692 MS.gene055908:CDS 55.0%
TTCTCACTACGAGGAGGAGG+TGG - chr1.1:48539613-48539632 None:intergenic 55.0%
!! CGTTCTAGAGGTCCTCCAAG+AGG + chr1.1:48539670-48539689 MS.gene055908:CDS 55.0%
CGGGAGTTCTCACTACGAGG+AGG - chr1.1:48539619-48539638 None:intergenic 60.0%
GCGGCTGCTCAGCAGTTGAA+TGG + chr1.1:48539074-48539093 MS.gene055908:CDS 60.0%
TCACTACGAGGAGGAGGTGG+TGG - chr1.1:48539610-48539629 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 48538444 48540237 48538444 ID=MS.gene055908
chr1.1 mRNA 48538444 48540237 48538444 ID=MS.gene055908.t1;Parent=MS.gene055908
chr1.1 exon 48538444 48538785 48538444 ID=MS.gene055908.t1.exon1;Parent=MS.gene055908.t1
chr1.1 CDS 48538444 48538785 48538444 ID=cds.MS.gene055908.t1;Parent=MS.gene055908.t1
chr1.1 exon 48538999 48539100 48538999 ID=MS.gene055908.t1.exon2;Parent=MS.gene055908.t1
chr1.1 CDS 48538999 48539100 48538999 ID=cds.MS.gene055908.t1;Parent=MS.gene055908.t1
chr1.1 exon 48539571 48539906 48539571 ID=MS.gene055908.t1.exon3;Parent=MS.gene055908.t1
chr1.1 CDS 48539571 48539906 48539571 ID=cds.MS.gene055908.t1;Parent=MS.gene055908.t1
chr1.1 exon 48540175 48540237 48540175 ID=MS.gene055908.t1.exon4;Parent=MS.gene055908.t1
chr1.1 CDS 48540175 48540237 48540175 ID=cds.MS.gene055908.t1;Parent=MS.gene055908.t1
Gene Sequence

>MS.gene055908

ATGTCTACCTCTGCAACATCCTTAGTACTTCCATCACTCTTCACCAAAAACTCCCCTCAATGTTTCTCTTCACTCCCTTCTCTTTCCCTCAACCCTAATTTCAAACCTTTTTCCTTTTCCTCTGTTTCTCTTCGTCCATCTTTGTCTATTTCCCATCGTTTCATTTCTCGTGTTGCTGTTTCTTCTGAATTTGACCAGGAAGAAGATACCTTTGATGATGGTGATGATACCCCTAGTTACTCTCCTAACCAGAGGTTGTTTGTTGGTAACCTTCCTTTCAGTGTTGACAGTGCTCAACTTGCTGAGATTTTTGAAAACGCTGGGAATGTTGAAATGGTTGAGGTAATTTCTTTACAAAGATACCCTTTTGGATGAAAATTATTGGGTTTGTGATAATTTATTATAAAGTCTGGTTTTTTATGGTTTAATTGGATACCCTTTTTGATTAAAATTATTGGGTTAAGGTTAATTGGATACCCTTTTGGATGAAAAATAATGGGTTTGTGGTGAATTTAATTGGGTTGGTGTTAAATGCTGAAATTTGTGTTCTTTCAGGTGATTTATGATAAGACTACTGGAAGAAGCAGGGGATTTGGTTTTGTTACTATGTCTTCTGCTGCGGAAGTTGAAGCGGCTGCTCAGCAGTTGAATGGCTATGTGAGTTTATTTTTCATCATTTGTTTGATAATTATTTAGATGTTTTGTTTTTAGAATTTCGGTTTTTGTTAGTTGTTTGAAATTGAGTATGGTAATTGTTGTGTGTGTATGAGTAATTAAATTCAAATGTTATTGTGTATGAATGTGACTGCAGTGCCATAGTACACAATTTCCTCACACAAACATGTTTTAATTTAATTTAATCAATGGTTTAATTATGTATTGATGAATTTGAATAGTTACAAGTAGTTAGGTATACCCCCATGTATAGGTATTTTATTAAAATGTGGATAAGGGGATAACTATGGTAATACCTTATCCAGATCTACTCATTGTAACTCTTATATCTGAGTTTGGATGATGTGAAAAGTAAATATGTTTTACTTTTGTTTGCTATTATTTGCTATGTTATGAATGGCTTTGGCCATTTTGTTTATAACATCTAAGGAAACATTCTTGGAAATTTACAGGTGGTGGATGGAAGAGAATTGAGAGTGAATGCTGGACCACCACCTCCTCCTCGTAGTGAGAACTCCCGTTTCGGTGAGAATCCTCGTTTTGGTGGTGATCGTTCTAGAGGTCCTCCAAGAGGTGGTTCTTCAGATAGCGACAACCGTGTTCATGTTGGTAACCTTGCTTGGGGTGTTGACAACTTGGCACTTGAGTCATTGTTTGGTGAACAAGGACAAGTTTTGGAAGCAAAGGTAATCTATGACAGGGAAAGTGGAAGATCTAGAGGATTTGGCTTTGTGACTTTCAGTAGCGCTGATGAGGTCAACAGTGCTATTCGAACCTTAGATGGCGCGGTAAGCATGCAAATCCCTCCTCTATTCAATATGATGCAGGTCTTTTTAATTTCATAATTCAAATTAGATTTATGTTACTTTTAGATTATGAGTTAAAATTCAGGGACCCTAATTTTTTTAATTATGAAAGGGTTAAGTCCCTTGGAGGATTCAAAGCCATTGAGTTGTAGTTTTGCGTCTTCAACTCTTCATGTGTGAATTGGTGTTGTGTAAAGCTATATTATGTATTTAACCACTGGAGTCTTACATCATCTGGTTTTTTTTGTAGGACTTGAATGGCAGAGCTATCCGAGTCTCACCAGCCGATAGTAGACCAAAGCGTCAATTTTGA
Protein sequence

>MS.gene055908.t1

MSTSATSLVLPSLFTKNSPQCFSSLPSLSLNPNFKPFSFSSVSLRPSLSISHRFISRVAVSSEFDQEEDTFDDGDDTPSYSPNQRLFVGNLPFSVDSAQLAEIFENAGNVEMVEVIYDKTTGRSRGFGFVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRSRGPPRGGSSDSDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVNSAIRTLDGADLNGRAIRVSPADSRPKRQF