AlfalfaGEDB | MS.gene57097

M. sativa cultivar XinJiangDaYe / MS.gene57097

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004523 GO:0004540 GO:0005488 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0097159 GO:0140098 GO:1901363
PFAM: PF13456.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57097.t1	XP_024641189.1	95.9	317	13	0	1	317	1	317	1.20E-149	539.3

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57097.t1	P9WLH5	42.0	138	79	1	179	315	5	142	1.7e-19	98.2

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57097.t1	A0A396H9H0	95.9	317	13	0	1	317	1	317	8.8e-150	539.3

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049190	MS.gene57097	0.85151	8.47E-61	-1.69E-46
MS.gene049328	MS.gene57097	0.813385	2.63E-51	-1.69E-46
MS.gene049418	MS.gene57097	0.822654	2.11E-53	-1.69E-46
MS.gene050630	MS.gene57097	0.875011	4.31E-68	-1.69E-46
MS.gene050648	MS.gene57097	0.803473	3.43E-49	-1.69E-46
MS.gene051067	MS.gene57097	0.808352	3.23E-50	-1.69E-46
MS.gene051248	MS.gene57097	0.813783	2.15E-51	-1.69E-46
MS.gene051263	MS.gene57097	0.828391	9.23E-55	-1.69E-46
MS.gene051671	MS.gene57097	0.805931	1.05E-49	-1.69E-46
MS.gene052133	MS.gene57097	0.802543	5.34E-49	-1.69E-46

Showing 1 to 10 of 28 entries

Previous1 2 3Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57097.t1	AT3G01410	46.474	312	139	3	1	311	5	289	3.55e-91	273
MS.gene57097.t1	AT3G01410	46.474	312	139	3	1	311	5	289	3.55e-91	273
MS.gene57097.t1	AT1G24090	45.130	308	133	5	4	311	80	351	4.30e-78	242
MS.gene57097.t1	AT5G51080	40.584	308	119	4	4	311	14	257	2.81e-67	211
MS.gene57097.t1	AT5G51080	40.584	308	119	4	4	311	77	320	1.54e-66	211
MS.gene57097.t1	AT5G51080	40.584	308	119	4	4	311	77	320	1.54e-66	211

Showing 1 to 6 of 6 entries

Previous1Next

Find 56 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTGATTGCACACGAGC+AGG	0.475014	6.2:-3708408	None:intergenic
AAACTTATTCATCAACTCCT+TGG	0.471646	6.2:-3708796	None:intergenic
AAAGGGAATCCTGGACCAGC+TGG	0.523320	6.2:+3708134	MS.gene57097:CDS
AAAGTGTCTCAAACCTGATA+AGG	0.474134	6.2:-3706285	None:intergenic
AACCGCGCGTTAAATCTCCA+AGG	0.673817	6.2:+3709149	MS.gene57097:CDS
AACCTGATTGCACACGAGCA+GGG	0.549085	6.2:-3708407	None:intergenic
AACCTTGGAGATTTAACGCG+CGG	0.635100	6.2:-3709151	None:intergenic
AATAATGTTGCTGAATATCG+AGG	0.614886	6.2:+3708319	MS.gene57097:CDS
AATCCTGGACCAGCTGGTGC+TGG	0.416599	6.2:+3708140	MS.gene57097:CDS
ACCTTGAAAGCTCTTCGATG+AGG	0.648075	6.2:-3707252	None:intergenic

Showing 1 to 10 of 56 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATAAGCCAATCCAAAC+GGG	-	chr6.2:3705086-3705105	None:intergenic	30.0%
AAACTTATTCATCAACTCCT+TGG	-	chr6.2:3708799-3708818	None:intergenic	30.0%
AAAGTCTTGAAATCTAACCT+TGG	-	chr6.2:3709169-3709188	None:intergenic	30.0%
AAATTAGAACTGAAACCGAT+AGG	-	chr6.2:3709201-3709220	None:intergenic	30.0%
AACTTTAAATATCCTCAACC+AGG	+	chr6.2:3707019-3707038	MS.gene57097:intron	30.0%
AAGAAAATCGGGCAATTAAT+AGG	-	chr6.2:3707899-3707918	None:intergenic	30.0%
AAGACAAAAACTTAGCATGA+AGG	-	chr6.2:3705606-3705625	None:intergenic	30.0%
AATAAGCTGAAAACAGCTTA+TGG	-	chr6.2:3705419-3705438	None:intergenic	30.0%
AATAATGTTGCTGAATATCG+AGG	+	chr6.2:3708319-3708338	MS.gene57097:CDS	30.0%
AATATAAAGGAGCTCCATTT+AGG	-	chr6.2:3705995-3706014	None:intergenic	30.0%

Showing 1 to 10 of 249 entries

Previous1 2 3 4 5…25Next

Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	3704840	3709487	3704840	ID=MS.gene57097
chr6.2	mRNA	3704840	3709487	3704840	ID=MS.gene57097.t1;Parent=MS.gene57097
chr6.2	exon	3704840	3704938	3704840	ID=MS.gene57097.t1.exon1;Parent=MS.gene57097.t1
chr6.2	CDS	3704840	3704938	3704840	ID=cds.MS.gene57097.t1;Parent=MS.gene57097.t1
chr6.2	exon	3706135	3706293	3706135	ID=MS.gene57097.t1.exon2;Parent=MS.gene57097.t1
chr6.2	CDS	3706135	3706293	3706135	ID=cds.MS.gene57097.t1;Parent=MS.gene57097.t1
chr6.2	exon	3706925	3707008	3706925	ID=MS.gene57097.t1.exon3;Parent=MS.gene57097.t1
chr6.2	CDS	3706925	3707008	3706925	ID=cds.MS.gene57097.t1;Parent=MS.gene57097.t1
chr6.2	exon	3707212	3707295	3707212	ID=MS.gene57097.t1.exon4;Parent=MS.gene57097.t1
chr6.2	CDS	3707212	3707295	3707212	ID=cds.MS.gene57097.t1;Parent=MS.gene57097.t1
chr6.2	exon	3707410	3707505	3707410	ID=MS.gene57097.t1.exon5;Parent=MS.gene57097.t1
chr6.2	CDS	3707410	3707505	3707410	ID=cds.MS.gene57097.t1;Parent=MS.gene57097.t1
chr6.2	exon	3708101	3708193	3708101	ID=MS.gene57097.t1.exon6;Parent=MS.gene57097.t1
chr6.2	CDS	3708101	3708193	3708101	ID=cds.MS.gene57097.t1;Parent=MS.gene57097.t1
chr6.2	exon	3708283	3708426	3708283	ID=MS.gene57097.t1.exon7;Parent=MS.gene57097.t1
chr6.2	CDS	3708283	3708426	3708283	ID=cds.MS.gene57097.t1;Parent=MS.gene57097.t1
chr6.2	exon	3708741	3708848	3708741	ID=MS.gene57097.t1.exon8;Parent=MS.gene57097.t1
chr6.2	CDS	3708741	3708848	3708741	ID=cds.MS.gene57097.t1;Parent=MS.gene57097.t1
chr6.2	exon	3709119	3709170	3709119	ID=MS.gene57097.t1.exon9;Parent=MS.gene57097.t1
chr6.2	CDS	3709119	3709170	3709119	ID=cds.MS.gene57097.t1;Parent=MS.gene57097.t1
chr6.2	exon	3709453	3709487	3709453	ID=MS.gene57097.t1.exon10;Parent=MS.gene57097.t1
chr6.2	CDS	3709453	3709487	3709453	ID=cds.MS.gene57097.t1;Parent=MS.gene57097.t1

Gene Sequence

>MS.gene57097

ATGGCTGATGAGAAAGATGCTTTCTATGTTGTAAAGAAAGGGAATGTTATTGGCATATACAAGTCTTTCACTGATATTCAACCTTTACTTTCATCTTCTGTATGTATCCTTATGCAAAGTTTTTGTCTTTGGAATTTTTCTGCATTTGGGTTTGTATGCTTTGTACGATGTTGTATCAGTAAATGTAGTTACTTCTTGTTATGTTCTTCTCCCAGCTTATGGATTTTTTTTCTGTATTTAGGGCCCGTTTGGATTGGCTTATTTTTTAGCTTATGCAAATAAATAAGCTTTTATGTTAATTCATAAGTTCTTATTAACGAAAATTGTATCTTCATAAGCTGTTTTTTTTCATAAACTACCTTGACAAACTTATGAATAATGCATAAAAGCTTATTTATTTGCATAAGCTGTTTTGCATAAGCTCAAAAACAAGCCAATCCAAACGGTCCCTTAGTTATGCATGATTTGTGATGTTGAACTACTAGAGCATGTTTGGTTTGTCTTATTTGAACTTGTGTAGTACTAGCATAAGTGGTGAGACTGTTTGAGAGTTTAAGGAAACAGCTTATGACATTACCATAAGCTGTTTTCAGCTTATTTCTTTAAGCTCTACATGTTAGCTTATGAAAACAGCTTATGGTTTATGTGAAAATAGTTTGACTTTATTTTATCTTTGATATAAAAATAGCTTATACATAAGCACTTCATTAAGATTTTTTTATTCAAACATGATCTATATGGAGGTCTTATTTGTAATGTTCTTCCTTCATGCTAAGTTTTTGTCTTTGGATTTTTTCTGTATTTTGGGTATGTATATTTTGTGATGTTGAACCACTAAATGGAGTTCATTTATAAAGGGCCTCTTTGGATGAAGAAATAAGCCCATCCACTAATATAATCATAAACCACTCATGAGACTGTTTGGGAGAGCTTATAGAAACATCTTATGACATGTCAATAAGCCGCCTTTAGCTTATGAAAAAAACATCTACAAAAACAACCTCGATGAAAACAATTTTGACTTTTTTGTATCTTTTAATACAGAAATAGCTTATACATAAGCACTTGTTTTTTTTTTTTGAAGAAACATAAGCACTTGTATGATAAGCGTTTATGCTATAAGCGCTTAATTAAACTGTTTATCCAAACTGGCCTAAATGGAGCTCCTTTATATTGAACTTATGGGGTTGGTTTTTACTATTTTTTCCTTCCTGAAAACAACCATGTCTTCTTTGTTGTTTTGGTTAAAATGGAAATGGGGTGTTCTCAGTTAAGTGTTTTCATTTTCCAAGCAGGTTTCTGGTGAAGCTGTAAGTGTTTTTAAAGGGTTTTCTTTACCTCAAGAAACTGAGGAGTATCTTGTCTCACATGGACTTAAGGGAGCCACTTACTCTATCAGTGCTGCTCATGTAAATGCGGGTAGTTTTGGAAGACTTGCTGTTTGTCCTTATCAGGTTTGAGACACTTTTTGTTCTTACTTTTGTTGCTCTCTTAAATTTGTCGTAAATTTTCCTCTTATATTGGATAAAGGCCTATGAAGCACTGCATGTCGTCACCGATAATCATTGGATGAAATAGGATAATTGAATGTAACCACATGTATAGGTGTCAGCCATCGGCATGTGCCGGACACTGAACACACCTTCAATGTGAAGTGTCGATTCTACATAGATAAAAGCCCTTGTTTTGCGTGTCCAAAGGCTTGATATTTTTAGCTTGAACATTATGCTGCAACTTATGTGTTTTCCTCAATGTTGTCAATTGTGAATCGCAAATGACAATAGTGGCTTGTTCAGATTCCATTATGCTACAGCGTTATAGCTGTAACTTGGCAACATTTTGTACTAATTTGCGTATCACAGAACAATAGTGGCTTGTTCAAATTCTGTTATTCTATGGCGCTATATCACTGCTATTTGACAAGATTGATTTTCCTCCCTTATTATGTTGGATTGTATTGCATAGTGGTTCATCCATAACTATCATTATATCTGATAACTTCTTAAGCTTATGCCATTTGTGTCTCTGGCAAGTTTGTAATTGGAAACTTTTTAACTTAATGAAGAGAGATTAATGTTCTTTCAGGATCCATGTTCTTCAGGAGGAGGAACTGTTATGGCAAATTCCTCATTAAAGAGATCGCAAGATGCATTGCAAGCTGACACCAGTGTGAGTTATCAACTTTAAATATCCTCAACCAGGAATTATTACCTTTACATTACCAAAGACGTATCAGACATGTATCGGTGTCGGATACGTGTCGGACACCGATACTTTGGCATTTTTGAAGTATTGGGGCTTCCCATCATTATAGTGATTAATCTATTCTTATATTATATGGAGAAAAGTTTAAGAGATTAATTTTCTTTCAGGATCCATATTCTTACGGAGGAAGAACTAATATGGTGAATTCCTCATCGAAGAGCTTTCAAGGTGCCACACAACTTGATGCTAGTGTGAGTTGTAAACTTTGGAATATCCTCAACCATGAATTTTCACCGAATATTACCAAAGAAAGGCTCATTGCTTATTGCTTCGTCTGTTTTCGTTCTTTTCCTTTTTTTGTACAGAAGAGAGTTGGATCATCTTCATTTTCAACAAATTTGCAAAGGAATCATGCTATAGGTGGATTACAACTACAAGCAGACGTTTCTACTAATAGTTGTGTAAGCTCCTTTGTGTTTCGCATTGTTAATTACCATTGAGTAGTGATATTTGTACAACTCTTTGGAACAACTTTATTGACAACTTTGTTTTTCTTTCATTTGATTGGTCAAAAACAATAGAGAGAGAAAAAGGAAGAGAGAGAATAAAAACATGATGTGAGTATGAGAGAGAAAGTTGTCAAAAAGTTGTTAGAAAATGGTTGTACAAATATCATTTCTCATTACGATTTTATGGCTTTCAGATCTTTAATCTTGATTTGACCTTGTTGATCGGAATTTTCTGGTTATGTTTTTTCCTGTCATTTAAAGTATGTATGTGGCACTAGGTTCAAGATTAAAACATTAAGTCACATGAATTCTGTAAGTGACCATAAGATTACGTCCAAGCTCCCTATTAATTGCCCGATTTTCTTCATTTGTATGCACTCATTCACAAGTGGTTATTATAAATAAAAAGTTCTGTGAGTCATAAAATTGATTTCATCTCTTAAAGTTTTGGCAGCAATTCAACATTATTCTTGATCTTACCTAGATAGATATTTTACAAAATAACTCAATCTATAGGATAAATAATACAACAAAACATTTCTTGTAGCTTTCTTGTAGACTTGAGTTTGATGGTGCGTGCAAAGGGAATCCTGGACCAGCTGGTGCTGGAGCTATACTGCGTGCTGAAGATGGGAGCAAGGTGAATATTTTGTATTTGTACAAGTAATTAATCATTTTTGTGATATATATTCTCTGTGAAAAGCAGCTAACTGCCATGTCTCTTCTTAGGTCTATCGTTTGCGTGAAGGAGTTGGTGCTGCTACAAATAATGTTGCTGAATATCGAGGATTAATTTTAGGATTGAAACAAGCTCTCAAAAATGGATATAAGCACATCCGTGTTCAAGGAGACTCCCTGCTCGTGTGCAATCAGGTTTGTTATCTCTAAAGATACAAAGTATGCATCAATGTTGTTAAGTAGTGGTGCAGTAGCGCTATAGCGTAATAGAATTTCAATAAATCACTATTGTTTCGCGATATGCTATTAATTACAAAATGTTGAATAAATCACTATTTTCTTTTATCTGCGATCGACAACACTAGTATGCATTATACCTAGTATTTTTCAAATCTCGCCCTCTCTTGATACCTATATTGGTCTATATTTCACTAATATCTTTTATAACTTTTCAATTCTTATACTCTTTCTAATCATTTAACCATCATTTTTGTTTGCTTTTGTAACAGATTCAGGGTATATGGAAAGTAAAAAACGCGAATATGGGCGAATTATGCAATGAAGCCAAGGAGTTGATGAATAAGTTTCAGTCGTTCAAGATCAATCATGTTCTTAGGGTACACTCTTAGTCACTTGGTCATTATTTTGCTTACAAAATGTTTGATAAGTTTCCCTTTTCTCTTAAATGTTAGACGTTACATTGGCATTTGGCAATCTTGTATTTGTATAGTCATAATCACTAGCATCAATATACACTCCTAATTATATGAATAATTTCATGCAAACTATTTTTACCTTTTTGTTTTTAGATTAAAGCTTCCTCTTTTTTCTTTTGTCTTGCTATTTGGAATCTGTTTATAAATAACATTTTTTTTTTAATGTTCAAGGAATATAACTCTGAAGCTGATGTTCAAGCGAACCGCGCGTTAAATCTCCAAGGTTAGATTTCAAGACTTTTCTGAGTTCCCTATCGGTTTCAGTTCTAATTTGCAATAAGCTTCACACCAAACTGTCATGATTTCCACAAAACAACATTGCTCCGTTCTCTATAGTCTCTAACACCTTTTTGCACCACTTAAATCTCCTAATTTTCATGCATATTAAACAATGCACTGAAGAATTTTCTCTATGATGGTAGAAATTATTTTTACTTAGATTTTTATTTTCATATCTTCGTTTGGAAGGGGAACATAAATTTTAAGGGATTTTGAACTTTTGCAGCTGGTCAGGTTGAAGAAGATTGTGAGATAAAATAA

Protein sequence

>MS.gene57097.t1

MADEKDAFYVVKKGNVIGIYKSFTDIQPLLSSSVSGEAVSVFKGFSLPQETEEYLVSHGLKGATYSISAAHVNAGSFGRLAVCPYQDPCSSGGGTVMANSSLKRSQDALQADTSDPYSYGGRTNMVNSSSKSFQGATQLDASKRVGSSSFSTNLQRNHAIGGLQLQADVSTNSCLSCRLEFDGACKGNPGPAGAGAILRAEDGSKVYRLREGVGAATNNVAEYRGLILGLKQALKNGYKHIRVQGDSLLVCNQIQGIWKVKNANMGELCNEAKELMNKFQSFKINHVLREYNSEADVQANRALNLQAGQVEEDCEIK