AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41019

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41019.t1 MTR_1g056520 82.877 292 40 4 1 283 1 291 1.16e-163 458
MS.gene41019.t1 MTR_7g106440 57.586 290 98 7 14 284 14 297 3.09e-103 305
MS.gene41019.t1 MTR_3g027140 42.045 176 102 0 100 275 60 235 1.80e-44 152
MS.gene41019.t1 MTR_1g045510 41.935 186 100 1 94 279 107 284 2.56e-44 153
MS.gene41019.t1 MTR_1g064230 35.075 268 152 5 21 275 14 272 8.58e-42 146
MS.gene41019.t1 MTR_3g075500 39.344 183 109 2 95 277 104 284 8.69e-39 139
MS.gene41019.t1 MTR_4g104470 38.122 181 107 2 95 275 117 292 1.32e-37 135
MS.gene41019.t1 MTR_3g075500 39.881 168 99 2 95 262 104 269 6.41e-35 128
MS.gene41019.t1 MTR_5g030020 38.983 177 103 3 100 275 96 268 3.69e-29 114
MS.gene41019.t1 MTR_2g097960 29.843 191 123 3 92 279 7 189 1.47e-21 94.7
MS.gene41019.t1 MTR_2g022950 29.612 206 130 7 91 289 51 248 3.13e-21 91.7
MS.gene41019.t1 MTR_2g022950 29.949 197 126 6 91 283 51 239 3.54e-21 91.7
MS.gene41019.t1 MTR_2g022950 29.949 197 126 6 91 283 51 239 1.04e-20 92.0
MS.gene41019.t1 MTR_3g099590 28.571 189 126 4 86 272 75 256 1.75e-20 89.7
MS.gene41019.t1 MTR_3g065190 28.495 186 120 3 91 275 16 189 3.08e-19 87.4
MS.gene41019.t1 MTR_4g131970 28.351 194 126 4 86 275 60 244 8.28e-19 86.7
MS.gene41019.t1 MTR_7g102730 32.544 169 105 5 102 270 100 259 8.89e-18 84.3
MS.gene41019.t1 MTR_7g102730 26.601 203 128 5 85 275 174 367 6.54e-16 78.6
MS.gene41019.t1 MTR_7g102730 29.878 164 103 2 102 265 12 163 1.30e-14 74.7
MS.gene41019.t1 MTR_4g086600 28.191 188 129 3 100 284 116 300 2.70e-17 82.4
MS.gene41019.t1 MTR_4g085540 28.916 166 98 3 102 263 36 185 2.62e-16 79.7
MS.gene41019.t1 MTR_4g085540 30.392 204 111 6 91 275 200 391 5.49e-16 79.0
MS.gene41019.t1 MTR_1g061870 28.814 177 119 4 102 275 196 368 3.04e-16 79.3
MS.gene41019.t1 MTR_1g061870 22.703 185 131 2 102 286 17 189 1.08e-13 71.6
MS.gene41019.t1 MTR_4g124940 26.154 195 130 3 81 275 27 207 8.14e-16 77.8
MS.gene41019.t1 MTR_7g013740 41.772 79 46 0 197 275 38 116 8.38e-16 73.6
MS.gene41019.t1 MTR_1g020080 26.178 191 130 4 98 285 95 277 1.85e-15 75.9
MS.gene41019.t1 MTR_3g080130 35.632 87 54 1 199 285 36 120 2.58e-15 72.0
MS.gene41019.t1 MTR_3g101370 24.868 189 132 3 94 279 87 268 2.82e-15 75.1
MS.gene41019.t1 MTR_3g109090 24.020 204 141 2 80 283 40 229 7.46e-15 75.1
MS.gene41019.t1 MTR_3g109090 24.020 204 141 2 80 283 24 213 7.53e-15 75.1
MS.gene41019.t1 MTR_7g013730 36.471 85 54 0 197 281 38 122 9.46e-15 73.2
MS.gene41019.t1 MTR_7g013730 33.333 87 58 0 90 176 30 116 2.62e-11 63.2
MS.gene41019.t1 MTR_3g102040 27.168 173 106 3 102 270 26 182 1.06e-14 75.1
MS.gene41019.t1 MTR_6g040190 25.134 187 128 3 102 288 27 201 1.07e-14 75.1
MS.gene41019.t1 MTR_6g040190 26.154 195 126 5 92 275 192 379 7.32e-11 63.2
MS.gene41019.t1 MTR_1g020080 25.131 191 132 3 98 285 95 277 1.20e-14 74.3
MS.gene41019.t1 MTR_3g101370 24.868 189 132 3 94 279 87 268 2.31e-14 73.6
MS.gene41019.t1 MTR_1g019150 28.986 207 127 5 85 280 196 393 2.95e-14 73.6
MS.gene41019.t1 MTR_1g019150 26.316 171 106 3 102 268 34 188 6.15e-14 72.8
MS.gene41019.t1 MTR_1g097440 26.154 195 120 4 102 288 32 210 6.49e-14 72.8
MS.gene41019.t1 MTR_1g097440 27.811 169 109 5 99 265 117 274 4.61e-12 67.0
MS.gene41019.t1 MTR_1g097440 29.082 196 107 8 102 280 211 391 2.60e-11 64.7
MS.gene41019.t1 MTR_7g118230 29.834 181 87 5 101 277 44 188 8.87e-13 68.6
MS.gene41019.t1 MTR_8g022050 24.615 195 133 3 81 275 43 223 1.05e-12 68.6
MS.gene41019.t1 MTR_8g022050 25.521 192 117 3 92 261 139 326 1.89e-11 64.7
MS.gene41019.t1 MTR_6g004810 24.444 225 141 6 62 285 22 218 1.19e-12 68.2
MS.gene41019.t1 MTR_3g084040 39.506 81 48 1 197 277 34 113 1.38e-12 64.7
MS.gene41019.t1 MTR_4g109540 35.366 82 51 1 200 281 43 122 2.11e-12 66.6
MS.gene41019.t1 MTR_4g109540 36.782 87 54 1 96 181 38 124 7.34e-12 65.1
MS.gene41019.t1 MTR_7g094660 26.699 206 131 6 79 275 622 816 2.66e-12 67.8
MS.gene41019.t1 MTR_1g115375 25.824 182 125 6 101 281 221 393 2.79e-12 67.4
MS.gene41019.t1 MTR_4g088010 23.645 203 137 4 84 281 55 244 5.84e-12 66.2
MS.gene41019.t1 MTR_4g122650 27.108 166 106 6 101 263 89 242 6.27e-12 66.6
MS.gene41019.t1 MTR_2g026180 28.049 164 107 4 101 257 5 164 8.79e-12 65.9
MS.gene41019.t1 MTR_4g070080 30.864 81 56 0 195 275 2 82 8.82e-12 62.0
MS.gene41019.t1 MTR_3g005670 24.885 217 139 6 90 284 279 493 1.34e-11 65.5
MS.gene41019.t1 MTR_3g005670 24.885 217 139 6 90 284 281 495 1.51e-11 65.5
MS.gene41019.t1 MTR_4g070080 30.864 81 56 0 195 275 2 82 1.82e-11 62.0
MS.gene41019.t1 MTR_6g040070 25.967 181 124 5 102 275 107 284 3.09e-11 64.7
MS.gene41019.t1 MTR_4g070190 30.864 81 56 0 195 275 4 84 3.11e-11 61.2
MS.gene41019.t1 MTR_4g070140 33.735 83 55 0 193 275 2 84 3.20e-11 62.0
MS.gene41019.t1 MTR_3g005670 24.885 217 139 6 90 284 279 493 4.39e-11 63.9
MS.gene41019.t1 MTR_3g005670 24.885 217 139 6 90 284 281 495 4.43e-11 63.9
MS.gene41019.t1 MTR_2g013130 25.571 219 133 6 82 275 41 254 4.65e-11 63.5
MS.gene41019.t1 MTR_3g005670 24.885 217 139 6 90 284 281 495 5.04e-11 63.9
MS.gene41019.t1 MTR_3g005670 24.885 217 139 6 90 284 281 495 5.06e-11 63.9
MS.gene41019.t1 MTR_8g092550 24.121 199 142 4 86 278 187 382 5.14e-11 63.5
MS.gene41019.t1 MTR_3g005670 24.885 217 139 6 90 284 279 493 5.38e-11 63.5
MS.gene41019.t1 MTR_2g013130 25.926 216 130 6 85 275 1 211 6.05e-11 63.2
MS.gene41019.t1 MTR_4g109540 40.299 67 38 1 215 281 66 130 8.21e-11 62.0
MS.gene41019.t1 MTR_2g013130 25.571 219 133 6 82 275 161 374 9.53e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41019.t1 AT3G52380 59.694 196 74 2 101 291 117 312 8.97e-86 261
MS.gene41019.t1 AT1G60000 42.857 175 93 1 101 275 86 253 2.57e-43 149
MS.gene41019.t1 AT1G60000 38.750 80 49 0 101 180 178 257 4.39e-12 65.5
MS.gene41019.t1 AT2G37220 36.916 214 121 2 76 275 67 280 3.50e-41 145
MS.gene41019.t1 AT5G50250 35.055 271 171 4 5 275 18 283 4.19e-41 144
MS.gene41019.t1 AT2G35410 40.187 214 113 5 67 276 70 272 3.71e-39 140
MS.gene41019.t1 AT3G52150 35.409 257 139 7 37 275 6 253 4.91e-39 138
MS.gene41019.t1 AT3G52150 35.409 257 139 7 37 275 6 253 4.91e-39 138
MS.gene41019.t1 AT4G24770 37.073 205 123 5 77 281 127 325 1.73e-36 134
MS.gene41019.t1 AT4G24770 37.073 205 123 5 77 281 127 325 1.73e-36 134
MS.gene41019.t1 AT1G01080 36.047 172 104 3 102 268 110 280 2.81e-25 103
MS.gene41019.t1 AT1G01080 36.416 173 103 4 102 268 110 281 1.83e-24 100
MS.gene41019.t1 AT1G01080 35.802 162 99 2 102 258 110 271 1.16e-23 98.6
MS.gene41019.t1 AT5G19350 27.869 183 120 4 100 279 24 197 1.12e-19 89.4
MS.gene41019.t1 AT5G19350 27.869 183 120 4 100 279 24 197 1.19e-19 89.0
MS.gene41019.t1 AT2G23350 29.193 161 102 2 102 262 48 196 2.49e-17 82.8
MS.gene41019.t1 AT2G23350 31.795 195 120 5 91 275 212 403 1.40e-15 77.8
MS.gene41019.t1 AT2G23350 30.435 161 103 5 102 262 136 287 1.76e-12 68.2
MS.gene41019.t1 AT3G14100 25.822 213 144 3 81 293 40 238 3.84e-17 82.0
MS.gene41019.t1 AT2G18510 26.882 186 123 3 91 275 16 189 5.21e-17 80.9
MS.gene41019.t1 AT4G27000 27.094 203 125 6 100 298 80 263 5.31e-17 81.3
MS.gene41019.t1 AT4G09040 28.571 182 119 4 95 272 89 263 6.83e-17 80.1
MS.gene41019.t1 AT1G54080 25.352 213 145 3 81 293 44 242 7.05e-17 81.3
MS.gene41019.t1 AT1G47490 25.664 226 144 6 57 276 68 275 7.73e-17 80.1
MS.gene41019.t1 AT4G09040 28.977 176 114 4 101 272 35 203 9.40e-17 78.6
MS.gene41019.t1 AT3G53460 41.176 119 58 3 63 180 73 180 2.85e-16 78.6
MS.gene41019.t1 AT3G53460 36.364 77 49 0 199 275 257 333 9.42e-15 74.3
MS.gene41019.t1 AT3G53460 36.486 74 47 0 101 174 258 331 7.87e-11 62.8
MS.gene41019.t1 AT3G53460 41.176 119 58 3 63 180 73 180 2.85e-16 78.6
MS.gene41019.t1 AT3G53460 36.364 77 49 0 199 275 257 333 9.42e-15 74.3
MS.gene41019.t1 AT3G53460 36.486 74 47 0 101 174 258 331 7.87e-11 62.8
MS.gene41019.t1 AT3G53460 41.176 119 58 3 63 180 73 180 2.85e-16 78.6
MS.gene41019.t1 AT3G53460 36.364 77 49 0 199 275 257 333 9.42e-15 74.3
MS.gene41019.t1 AT3G53460 36.486 74 47 0 101 174 258 331 7.87e-11 62.8
MS.gene41019.t1 AT1G47490 25.664 226 144 6 57 276 68 275 2.95e-16 79.3
MS.gene41019.t1 AT1G11650 25.907 193 128 4 92 279 54 236 3.43e-16 78.2
MS.gene41019.t1 AT3G55340 27.500 200 130 7 87 279 149 340 4.35e-16 79.3
MS.gene41019.t1 AT3G19130 25.941 239 154 6 47 279 62 283 4.58e-16 78.6
MS.gene41019.t1 AT1G49760 30.120 166 96 4 102 263 47 196 8.19e-16 78.6
MS.gene41019.t1 AT1G49760 29.949 197 111 4 94 275 218 402 3.32e-14 73.6
MS.gene41019.t1 AT1G49760 27.108 166 102 5 102 262 135 286 1.23e-11 65.9
MS.gene41019.t1 AT1G49760 30.120 166 96 4 102 263 47 196 8.19e-16 78.6
MS.gene41019.t1 AT1G49760 29.949 197 111 4 94 275 218 402 3.32e-14 73.6
MS.gene41019.t1 AT1G49760 27.108 166 102 5 102 262 135 286 1.23e-11 65.9
MS.gene41019.t1 AT1G11650 25.907 193 128 4 92 279 54 236 9.06e-16 77.8
MS.gene41019.t1 AT3G16380 29.947 187 123 5 94 275 196 379 1.03e-15 77.8
MS.gene41019.t1 AT3G16380 28.729 181 117 6 102 280 114 284 1.74e-11 65.1
MS.gene41019.t1 AT3G16380 25.521 192 128 4 79 270 5 181 1.90e-11 65.1
MS.gene41019.t1 AT1G54080 25.346 217 144 4 81 293 44 246 1.85e-15 77.0
MS.gene41019.t1 AT5G54900 25.253 198 135 5 100 292 60 249 1.98e-15 76.6
MS.gene41019.t1 AT4G34110 27.778 162 105 2 102 263 38 187 2.36e-15 77.0
MS.gene41019.t1 AT4G34110 28.261 230 135 8 70 275 170 393 7.29e-14 72.4
MS.gene41019.t1 AT4G34110 29.193 161 105 4 102 262 126 277 1.12e-13 72.0
MS.gene41019.t1 AT2G36660 28.571 182 117 5 102 275 203 379 6.88e-15 75.5
MS.gene41019.t1 AT3G53460 36.364 77 49 0 199 275 278 354 1.09e-14 74.3
MS.gene41019.t1 AT3G53460 41.584 101 48 2 63 163 73 162 8.17e-14 71.6
MS.gene41019.t1 AT3G53460 36.486 74 47 0 101 174 279 352 9.80e-11 62.4
MS.gene41019.t1 AT4G13850 40.000 85 49 1 200 284 36 118 1.24e-14 70.5
MS.gene41019.t1 AT4G13850 40.000 85 49 1 200 284 36 118 1.51e-14 70.5
MS.gene41019.t1 AT4G13850 40.000 85 49 1 200 284 36 118 1.69e-14 70.5
MS.gene41019.t1 AT1G22760 29.609 179 119 3 102 275 231 407 1.88e-14 74.3
MS.gene41019.t1 AT1G22760 27.439 164 112 3 102 265 138 294 3.17e-13 70.5
MS.gene41019.t1 AT1G22760 27.108 166 100 4 102 263 51 199 6.68e-11 63.5
MS.gene41019.t1 AT3G15010 26.733 202 139 4 83 284 59 251 3.01e-14 73.2
MS.gene41019.t1 AT3G15010 26.733 202 139 4 83 284 59 251 3.01e-14 73.2
MS.gene41019.t1 AT1G34140 30.366 191 103 7 102 275 121 298 1.33e-13 71.2
MS.gene41019.t1 AT1G34140 31.073 177 104 5 102 275 33 194 1.69e-12 67.8
MS.gene41019.t1 AT1G17370 25.641 195 131 3 81 275 35 215 1.38e-13 71.2
MS.gene41019.t1 AT1G17370 25.641 195 131 3 81 275 35 215 1.43e-13 71.2
MS.gene41019.t1 AT4G13850 39.759 83 48 1 200 282 36 116 1.46e-13 67.0
MS.gene41019.t1 AT3G08000 36.709 79 50 0 200 278 42 120 1.93e-13 67.0
MS.gene41019.t1 AT1G49600 28.261 184 120 4 100 279 119 294 2.05e-13 70.9
MS.gene41019.t1 AT1G49600 28.261 184 120 4 100 279 119 294 2.05e-13 70.9
MS.gene41019.t1 AT1G47500 25.789 190 127 5 92 275 95 276 3.25e-13 69.7
MS.gene41019.t1 AT1G49600 28.261 184 120 4 100 279 119 294 3.40e-13 70.1
MS.gene41019.t1 AT5G40490 26.190 210 129 6 83 283 21 213 5.88e-13 69.3
MS.gene41019.t1 AT1G71770 27.174 184 117 4 102 275 241 417 6.34e-13 69.7
MS.gene41019.t1 AT1G71770 27.711 166 99 4 102 263 61 209 1.78e-11 65.5
MS.gene41019.t1 AT1G71770 27.174 184 117 4 102 275 241 417 6.34e-13 69.7
MS.gene41019.t1 AT1G71770 27.711 166 99 4 102 263 61 209 1.78e-11 65.5
MS.gene41019.t1 AT3G23830 36.471 85 52 1 200 284 36 118 6.46e-13 65.5
MS.gene41019.t1 AT3G23830 36.471 85 52 1 200 284 36 118 6.46e-13 65.5
MS.gene41019.t1 AT1G47500 25.654 191 128 5 92 276 95 277 6.80e-13 69.3
MS.gene41019.t1 AT5G61030 35.802 81 52 0 197 277 38 118 1.79e-12 67.4
MS.gene41019.t1 AT5G61030 35.484 93 60 0 84 176 24 116 3.03e-12 66.6
MS.gene41019.t1 AT5G61030 35.802 81 52 0 197 277 38 118 1.79e-12 67.4
MS.gene41019.t1 AT5G61030 35.484 93 60 0 84 176 24 116 3.03e-12 66.6
MS.gene41019.t1 AT1G17640 27.848 158 106 3 101 258 67 216 2.01e-12 67.4
MS.gene41019.t1 AT1G17640 27.848 158 106 3 101 258 67 216 2.01e-12 67.4
MS.gene41019.t1 AT1G17640 27.848 158 106 3 101 258 67 216 2.01e-12 67.4
MS.gene41019.t1 AT5G06210 32.500 80 54 0 101 180 35 114 2.47e-12 63.9
MS.gene41019.t1 AT4G26650 26.540 211 133 7 90 281 1 208 3.52e-12 67.0
MS.gene41019.t1 AT4G26650 26.667 210 132 7 91 281 5 211 7.22e-12 66.2
MS.gene41019.t1 AT1G60900 24.402 209 134 5 90 276 246 452 7.35e-12 66.2
MS.gene41019.t1 AT3G26420 33.750 80 53 0 196 275 4 83 9.69e-12 64.3
MS.gene41019.t1 AT4G39260 31.169 77 53 0 199 275 6 82 1.43e-11 60.5
MS.gene41019.t1 AT4G39260 30.769 78 54 0 198 275 5 82 1.84e-11 61.2
MS.gene41019.t1 AT2G21660 31.250 80 55 0 196 275 5 84 3.37e-11 61.2
MS.gene41019.t1 AT4G39260 30.769 78 54 0 198 275 5 82 4.44e-11 61.2
MS.gene41019.t1 AT2G21660 31.250 80 55 0 196 275 5 84 4.61e-11 61.2
MS.gene41019.t1 AT5G47320 40.000 85 49 1 200 284 32 114 6.13e-11 61.6
MS.gene41019.t1 AT4G36690 25.000 208 132 6 90 275 230 435 7.25e-11 63.2

Find 90 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCCTACTTTGGGCACTTC+TGG 0.130934 1.3:-41431519 None:intergenic
CCGACCTTTACGACTGAATT+TGG 0.142633 1.3:+41431909 MS.gene41019:CDS
AGTTGGAGGTAGGGTTATTA+AGG 0.221845 1.3:+41431488 MS.gene41019:CDS
TCCCAATTGGCTCAACTCTT+TGG 0.238814 1.3:+41430149 MS.gene41019:CDS
AACGGAAAATCTCGCGGATA+TGG 0.262481 1.3:+41431699 MS.gene41019:CDS
CAACAAAGAGTCTCCTTGAT+TGG 0.305570 1.3:-41430100 None:intergenic
TTCATTATCTTCTTCCCAAT+TGG 0.310967 1.3:+41430136 MS.gene41019:CDS
TGTTCTGTGTGGGAAGTTAA+AGG 0.331544 1.3:-41429892 None:intergenic
TGGGAAGAAGATAATGAAAA+TGG 0.335819 1.3:-41430131 None:intergenic
TGCCTACTTTGGGCACTTCT+GGG 0.350774 1.3:-41431518 None:intergenic
GAATCAATTCGAATGTTTGA+TGG 0.379569 1.3:+41430756 MS.gene41019:CDS
TGAATTTGGCTGTGGATAAC+AGG 0.383307 1.3:+41431923 MS.gene41019:CDS
ATTGTTGTTCTTCCTCCTCA+TGG 0.388722 1.3:-41429998 None:intergenic
CTCCAAAGAGTTGAGCCAAT+TGG 0.391995 1.3:-41430151 None:intergenic
AACAAAGAGTCTCCTTGATT+GGG 0.407980 1.3:-41430099 None:intergenic
CAAAGGCTTCTCTAAGATCC+TGG 0.418070 1.3:-41431629 None:intergenic
GCTCAACTCTTTGGAGAGGC+TGG 0.422749 1.3:+41430158 MS.gene41019:CDS
TCCAAAGAGTTGAGCCAATT+GGG 0.423377 1.3:-41430150 None:intergenic
TGAAGAGGGTTGAATAATTG+AGG 0.432626 1.3:-41429954 None:intergenic
GTGTGGGAAGTTAAAGGAAA+TGG 0.433410 1.3:-41429886 None:intergenic
GAAGCCTTTGCTGAGCAATC+AGG 0.442092 1.3:+41431642 MS.gene41019:CDS
GTAGGCAAAAGGGTACAAAT+AGG 0.445334 1.3:+41431534 MS.gene41019:CDS
AAGTGCCCAAAGTAGGCAAA+AGG 0.446953 1.3:+41431523 MS.gene41019:CDS
AATCAGGCTTACTGAGTGCC+AGG 0.450781 1.3:+41431658 MS.gene41019:CDS
AAGAGTCTGTGGTGGCAGAT+AGG 0.457732 1.3:-41429837 None:intergenic
TAATTGAGGGATTAAATTGA+AGG 0.470815 1.3:-41429940 None:intergenic
GAAGAGGGTTGAATAATTGA+GGG 0.476001 1.3:-41429953 None:intergenic
CAATCAAGGAGACTCTTTGT+TGG 0.482330 1.3:+41430101 MS.gene41019:CDS
ACAGAACTCAGACCTAAAAC+AGG 0.483263 1.3:+41430064 MS.gene41019:CDS
AGAGTCTGTGGTGGCAGATA+GGG 0.485185 1.3:-41429836 None:intergenic
AAGATCTATGCTGGAAACCT+TGG 0.486607 1.3:+41431591 MS.gene41019:CDS
AATGGAGGAATGAGTAGTAA+AGG 0.493216 1.3:-41429868 None:intergenic
CAAATAGGCTCAAACTATAG+AGG 0.494932 1.3:+41431549 MS.gene41019:CDS
GAGCCTAAGTCTTATACAAT+CGG 0.505377 1.3:+41432168 MS.gene41019:CDS
TTTACGACTGAATTTGGCTG+TGG 0.511362 1.3:+41431915 MS.gene41019:CDS
CTATGCTGGAAACCTTGGTT+GGG 0.512049 1.3:+41431596 MS.gene41019:CDS
AGGATTTGCGTTTGTTACAA+TGG 0.514453 1.3:+41430713 MS.gene41019:CDS
TCAATTACCGGAGGAGATGA+AGG 0.515198 1.3:-41431949 None:intergenic
AGCCCTCACAAGATCTATGC+TGG 0.520202 1.3:+41431582 MS.gene41019:CDS
CAGGAAGCCTTCATCTCCTC+CGG 0.520439 1.3:+41431942 MS.gene41019:CDS
TGTTACAATGGAGAGGGTGG+AGG 0.525866 1.3:+41430725 MS.gene41019:CDS
AATGAAGGAGGTGGATGAAG+AGG 0.529395 1.3:-41429969 None:intergenic
AAGCAGAATCAACCCAATCA+AGG 0.531753 1.3:+41430087 MS.gene41019:CDS
TCTATGCTGGAAACCTTGGT+TGG 0.532571 1.3:+41431595 MS.gene41019:CDS
TGTACAGACAGTTGGAGGTA+GGG 0.536228 1.3:+41431479 MS.gene41019:intron
TGCGTTTGTTACAATGGAGA+GGG 0.540835 1.3:+41430719 MS.gene41019:CDS
TTGTACAGACAGTTGGAGGT+AGG 0.542248 1.3:+41431478 MS.gene41019:intron
AAGCCGATTGTATAAGACTT+AGG 0.544286 1.3:-41432171 None:intergenic
AATTGAGGGATTAAATTGAA+GGG 0.544760 1.3:-41429939 None:intergenic
ATGAAGGAGGTGGATGAAGA+GGG 0.548537 1.3:-41429968 None:intergenic
GGCTGGAAATGTTATATCTG+TGG 0.549141 1.3:+41430175 MS.gene41019:CDS
TCCTCATGGAATGAAAATGA+AGG 0.556417 1.3:-41429984 None:intergenic
ACCAGTGCTTGCACTAGCCA+TGG 0.557085 1.3:-41429808 None:intergenic
AGTCGACTGCACGGTAAAGT+CGG 0.560033 1.3:-41432196 None:intergenic
TGTCTCTTTCGAAACTGCTG+AGG 0.563295 1.3:+41431725 MS.gene41019:CDS
CGAAACTGCTGAGGATGTAG+AGG 0.566347 1.3:+41431734 MS.gene41019:CDS
TTCCCAGAAGTGCCCAAAGT+AGG 0.569809 1.3:+41431516 MS.gene41019:CDS
TTGTTGTTGCTGTTCTGTGT+GGG 0.570534 1.3:-41429902 None:intergenic
ACAGCCAAATTCAGTCGTAA+AGG 0.572484 1.3:-41431913 None:intergenic
TGGAATGAAAATGAAGGAGG+TGG 0.573591 1.3:-41429978 None:intergenic
AGTGCCCAAAGTAGGCAAAA+GGG 0.576216 1.3:+41431524 MS.gene41019:CDS
AAAGGCTTCTCTAAGATCCT+GGG 0.581121 1.3:-41431628 None:intergenic
TGGTTGGGATATGACTTCCC+AGG 0.584520 1.3:+41431611 MS.gene41019:CDS
GTTGTTGTTGCTGTTCTGTG+TGG 0.585304 1.3:-41429903 None:intergenic
GATGTTGTACAGACAGTTGG+AGG 0.588100 1.3:+41431474 MS.gene41019:intron
TTGCGTTTGTTACAATGGAG+AGG 0.591751 1.3:+41430718 MS.gene41019:CDS
ACCATGGCTAGTGCAAGCAC+TGG 0.593359 1.3:+41429807 None:intergenic
GTTCCTTTCGTAGACGACCC+TGG 0.594290 1.3:-41431676 None:intergenic
TGGGAAGTTAAAGGAAATGG+AGG 0.597587 1.3:-41429883 None:intergenic
TTTCCAGCATAGATCTTGTG+AGG 0.601847 1.3:-41431585 None:intergenic
GACATCACAAATAGAAGCAG+AGG 0.606453 1.3:+41430693 MS.gene41019:CDS
TGGAAATGTTATATCTGTGG+AGG 0.608462 1.3:+41430178 MS.gene41019:CDS
ATTGGCTCAACTCTTTGGAG+AGG 0.610646 1.3:+41430154 MS.gene41019:CDS
AGGAAAAGTTGAAGAGTCTG+TGG 0.620276 1.3:-41429848 None:intergenic
TAAGCCTGATTGCTCAGCAA+AGG 0.625819 1.3:-41431646 None:intergenic
TTCCAGCATAGATCTTGTGA+GGG 0.627663 1.3:-41431584 None:intergenic
GTGCCAGGGTCGTCTACGAA+AGG 0.628572 1.3:+41431673 MS.gene41019:CDS
CCAAATTCAGTCGTAAAGGT+CGG 0.632704 1.3:-41431909 None:intergenic
TATGATGTTGTACAGACAGT+TGG 0.641337 1.3:+41431471 MS.gene41019:intron
GTTTGTTACAATGGAGAGGG+TGG 0.643170 1.3:+41430722 MS.gene41019:CDS
ATCAGGCTTACTGAGTGCCA+GGG 0.645982 1.3:+41431659 MS.gene41019:CDS
ACAGTCTACAGTCGACTGCA+CGG 0.650566 1.3:-41432205 None:intergenic
GTTGCTTTGAGTGCTATGAA+CGG 0.670859 1.3:+41431756 MS.gene41019:CDS
AAAAGTTGAAGAGTCTGTGG+TGG 0.674091 1.3:-41429845 None:intergenic
GTCGTCTACGAAAGGAACAA+CGG 0.675544 1.3:+41431681 MS.gene41019:CDS
GGGAAGTCATATCCCAACCA+AGG 0.679543 1.3:-41431608 None:intergenic
TCATGGAATGAAAATGAAGG+AGG 0.686382 1.3:-41429981 None:intergenic
AGGAACAACGGAAAATCTCG+CGG 0.706699 1.3:+41431693 MS.gene41019:CDS
TCTGTGGTGGCAGATAGGGA+AGG 0.718022 1.3:-41429832 None:intergenic
TTTGAGTGCTATGAACGGCG+TGG 0.729342 1.3:+41431761 MS.gene41019:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTAAATAATTAATAAACC+AGG - chr1.3:41430927-41430946 None:intergenic 15.0%
!! TAAGTCAAATAAAACAAAAT+TGG - chr1.3:41430654-41430673 None:intergenic 15.0%
!!! ATTAAAATTTTGCAATTTGA+GGG - chr1.3:41430313-41430332 None:intergenic 15.0%
!!! ATTATTTAGTTTTGTAATGA+TGG + chr1.3:41432135-41432154 MS.gene41019:intron 15.0%
!!! ATTTAAGATATTTTTGGTTT+TGG + chr1.3:41430604-41430623 MS.gene41019:intron 15.0%
!!! TGTTGATTACATTTTAAATA+TGG + chr1.3:41430795-41430814 MS.gene41019:intron 15.0%
!!! TTTAAGATATTTTTGGTTTT+GGG + chr1.3:41430605-41430624 MS.gene41019:intron 15.0%
!! AAAATTTGCACAACTAATAA+TGG - chr1.3:41431807-41431826 None:intergenic 20.0%
!! ACTTATTAAAACTTATCAAC+TGG - chr1.3:41431291-41431310 None:intergenic 20.0%
!! ATGATAAAAACTGAAAAGAA+TGG - chr1.3:41430211-41430230 None:intergenic 20.0%
!! CTTAAATCAAGAAAAGATAT+AGG - chr1.3:41431349-41431368 None:intergenic 20.0%
!! TATTCTATTATAGATGAAGA+TGG + chr1.3:41431004-41431023 MS.gene41019:intron 20.0%
!! TCTTAGATTAGTATATAGTA+TGG + chr1.3:41430968-41430987 MS.gene41019:intron 20.0%
!!! AATAAGTTGAAATCATCTTA+TGG + chr1.3:41431257-41431276 MS.gene41019:intron 20.0%
!!! ATTTTCGAATATTGATATGT+GGG + chr1.3:41430522-41430541 MS.gene41019:intron 20.0%
!!! GATTAAAATTTTGCAATTTG+AGG - chr1.3:41430314-41430333 None:intergenic 20.0%
!!! TATCATTTTGGGTATAAATT+AGG + chr1.3:41431110-41431129 MS.gene41019:intron 20.0%
!!! TATTTTCGAATATTGATATG+TGG + chr1.3:41430521-41430540 MS.gene41019:intron 20.0%
!!! TCTTGTCTTATTATCATTTT+GGG + chr1.3:41431099-41431118 MS.gene41019:intron 20.0%
!!! TTCTTGTCTTATTATCATTT+TGG + chr1.3:41431098-41431117 MS.gene41019:intron 20.0%
! AAACAGACCAATAAATCATT+TGG + chr1.3:41431317-41431336 MS.gene41019:intron 25.0%
! AACAGACCAATAAATCATTT+GGG + chr1.3:41431318-41431337 MS.gene41019:intron 25.0%
! AATAAGCTATTTATCCAAAC+AGG - chr1.3:41431137-41431156 None:intergenic 25.0%
! AATTGAGGGATTAAATTGAA+GGG - chr1.3:41429942-41429961 None:intergenic 25.0%
! ACATTTAGACCATAATGATT+TGG + chr1.3:41431027-41431046 MS.gene41019:intron 25.0%
! ATAAGCTATTTATCCAAACA+GGG - chr1.3:41431136-41431155 None:intergenic 25.0%
! CATTGTTTGTTTCATATATG+AGG + chr1.3:41430228-41430247 MS.gene41019:intron 25.0%
! GCTTAGTTGAAAATTAGTTA+GGG + chr1.3:41431062-41431081 MS.gene41019:intron 25.0%
! TAAAAACTGAAAAGAATGGA+AGG - chr1.3:41430207-41430226 None:intergenic 25.0%
! TAATTGAGGGATTAAATTGA+AGG - chr1.3:41429943-41429962 None:intergenic 25.0%
! TAGAGTTGCAATTTACAATT+TGG - chr1.3:41431400-41431419 None:intergenic 25.0%
!! CATTTTTATCAACATTGACA+TGG + chr1.3:41430438-41430457 MS.gene41019:intron 25.0%
!! TCAATTTAGTTCATACTTGT+AGG + chr1.3:41430332-41430351 MS.gene41019:intron 25.0%
!! TTATTTGGAATAAGCAAATG+AGG + chr1.3:41432009-41432028 MS.gene41019:intron 25.0%
!!! CCTTTATTTTGATCAATTAC+CGG - chr1.3:41431964-41431983 None:intergenic 25.0%
!!! TGTATAATGTACTGTTTTTC+AGG + chr1.3:41431876-41431895 MS.gene41019:intron 25.0%
AAGACAAGAAAACAAGATAC+TGG - chr1.3:41431088-41431107 None:intergenic 30.0%
AAGTTTGTCCTTGAAATTGT+AGG - chr1.3:41430565-41430584 None:intergenic 30.0%
AGTTTGTCCTTGAAATTGTA+GGG - chr1.3:41430564-41430583 None:intergenic 30.0%
CCGGTAATTGATCAAAATAA+AGG + chr1.3:41431961-41431980 MS.gene41019:intron 30.0%
CTGTCAATTACTAATCATGT+TGG + chr1.3:41432085-41432104 MS.gene41019:intron 30.0%
GAATCAATTCGAATGTTTGA+TGG + chr1.3:41430756-41430775 MS.gene41019:CDS 30.0%
GACAGAAAAATATGACATGA+GGG - chr1.3:41432070-41432089 None:intergenic 30.0%
GAGTTCAATTCTAATGGTAA+TGG + chr1.3:41431447-41431466 MS.gene41019:intron 30.0%
GATAAAACCCTACAATTTCA+AGG + chr1.3:41430554-41430573 MS.gene41019:intron 30.0%
GATAGCTTGGAAATGTTATT+TGG + chr1.3:41431994-41432013 MS.gene41019:intron 30.0%
GATTAAGCACCAAATCATTA+TGG - chr1.3:41431039-41431058 None:intergenic 30.0%
GGCTTAGTTGAAAATTAGTT+AGG + chr1.3:41431061-41431080 MS.gene41019:intron 30.0%
GTATCTCCCAAATGATTTAT+TGG - chr1.3:41431327-41431346 None:intergenic 30.0%
TGACAGAAAAATATGACATG+AGG - chr1.3:41432071-41432090 None:intergenic 30.0%
TGGGAAGAAGATAATGAAAA+TGG - chr1.3:41430134-41430153 None:intergenic 30.0%
TTAGTTCATACTTGTAGGAT+TGG + chr1.3:41430337-41430356 MS.gene41019:intron 30.0%
TTCATTATCTTCTTCCCAAT+TGG + chr1.3:41430136-41430155 MS.gene41019:CDS 30.0%
! TTTAGTTCCTCATTCCAAAA+TGG + chr1.3:41430286-41430305 MS.gene41019:intron 30.0%
!! AATGATTTGGTGCTTAATCA+AGG + chr1.3:41431040-41431059 MS.gene41019:intron 30.0%
!! AGGAAATAATGTTGATAGCT+TGG + chr1.3:41431981-41432000 MS.gene41019:intron 30.0%
!! ATCTTATTCAACTAGCTTTC+TGG + chr1.3:41431373-41431392 MS.gene41019:intron 30.0%
!! ATTGAAGGGTTTTGTAGAAA+TGG - chr1.3:41429928-41429947 None:intergenic 30.0%
!!! ATAATGTACTGTTTTTCAGG+AGG + chr1.3:41431879-41431898 MS.gene41019:intron 30.0%
!!! TTATTTTGATCAATTACCGG+AGG - chr1.3:41431961-41431980 None:intergenic 30.0%
AACAAAGAGTCTCCTTGATT+GGG - chr1.3:41430102-41430121 None:intergenic 35.0%
AAGCCGATTGTATAAGACTT+AGG - chr1.3:41432174-41432193 None:intergenic 35.0%
AATATTGATATGTGGGCTCT+AGG + chr1.3:41430529-41430548 MS.gene41019:intron 35.0%
AATGGAGGAATGAGTAGTAA+AGG - chr1.3:41429871-41429890 None:intergenic 35.0%
CAAATAGGCTCAAACTATAG+AGG + chr1.3:41431549-41431568 MS.gene41019:CDS 35.0%
CTAGCAGAGTTCAATTCTAA+TGG + chr1.3:41431441-41431460 MS.gene41019:intron 35.0%
GAAGAGGGTTGAATAATTGA+GGG - chr1.3:41429956-41429975 None:intergenic 35.0%
GATAGTGCAGGTTGTTTATA+AGG - chr1.3:41430897-41430916 None:intergenic 35.0%
TATGATGTTGTACAGACAGT+TGG + chr1.3:41431471-41431490 MS.gene41019:intron 35.0%
TCATGGAATGAAAATGAAGG+AGG - chr1.3:41429984-41430003 None:intergenic 35.0%
TCCTCATGGAATGAAAATGA+AGG - chr1.3:41429987-41430006 None:intergenic 35.0%
TGAAGAGGGTTGAATAATTG+AGG - chr1.3:41429957-41429976 None:intergenic 35.0%
TGGAAATGTTATATCTGTGG+AGG + chr1.3:41430178-41430197 MS.gene41019:CDS 35.0%
! AGGATTTGCGTTTGTTACAA+TGG + chr1.3:41430713-41430732 MS.gene41019:CDS 35.0%
! GAGCCTAAGTCTTATACAAT+CGG + chr1.3:41432168-41432187 MS.gene41019:CDS 35.0%
! TCAAGGACAAACTTGAGTTT+TGG + chr1.3:41430571-41430590 MS.gene41019:intron 35.0%
! TCCTTCATTTTCATTCCATG+AGG + chr1.3:41429983-41430002 MS.gene41019:CDS 35.0%
! TTCATTTTCATTCCATGAGG+AGG + chr1.3:41429986-41430005 MS.gene41019:CDS 35.0%
! TTGATTCTGCTTCCTGTTTT+AGG - chr1.3:41430079-41430098 None:intergenic 35.0%
!! TTTTAGGTCTGAGTTCTGTA+AGG - chr1.3:41430063-41430082 None:intergenic 35.0%
!!! TAGTTTTGTAATGATGGCGA+GGG + chr1.3:41432141-41432160 MS.gene41019:intron 35.0%
!!! TTAGTTTTGTAATGATGGCG+AGG + chr1.3:41432140-41432159 MS.gene41019:intron 35.0%
AAAAGTTGAAGAGTCTGTGG+TGG - chr1.3:41429848-41429867 None:intergenic 40.0%
AAAGTGTGCCAAAATCATGG+TGG + chr1.3:41430842-41430861 MS.gene41019:intron 40.0%
AAGATCTATGCTGGAAACCT+TGG + chr1.3:41431591-41431610 MS.gene41019:CDS 40.0%
AAGCAGAATCAACCCAATCA+AGG + chr1.3:41430087-41430106 MS.gene41019:CDS 40.0%
ACAGAACTCAGACCTAAAAC+AGG + chr1.3:41430064-41430083 MS.gene41019:CDS 40.0%
ACAGCCAAATTCAGTCGTAA+AGG - chr1.3:41431916-41431935 None:intergenic 40.0%
AGGAAAAGTTGAAGAGTCTG+TGG - chr1.3:41429851-41429870 None:intergenic 40.0%
AGTGCAGGTTGTTTATAAGG+AGG - chr1.3:41430894-41430913 None:intergenic 40.0%
AGTTGGAGGTAGGGTTATTA+AGG + chr1.3:41431488-41431507 MS.gene41019:CDS 40.0%
ATCGACATAGACATCAGACA+TGG - chr1.3:41430487-41430506 None:intergenic 40.0%
CAACAAAGAGTCTCCTTGAT+TGG - chr1.3:41430103-41430122 None:intergenic 40.0%
CAATCAAGGAGACTCTTTGT+TGG + chr1.3:41430101-41430120 MS.gene41019:CDS 40.0%
CCAAATTCAGTCGTAAAGGT+CGG - chr1.3:41431912-41431931 None:intergenic 40.0%
GACATCACAAATAGAAGCAG+AGG + chr1.3:41430693-41430712 MS.gene41019:CDS 40.0%
GGCTGGAAATGTTATATCTG+TGG + chr1.3:41430175-41430194 MS.gene41019:CDS 40.0%
GGTATAAATTAGGCCCTGTT+TGG + chr1.3:41431120-41431139 MS.gene41019:intron 40.0%
GTGCAGGTTGTTTATAAGGA+GGG - chr1.3:41430893-41430912 None:intergenic 40.0%
GTGTGGGAAGTTAAAGGAAA+TGG - chr1.3:41429889-41429908 None:intergenic 40.0%
TCCAAAGAGTTGAGCCAATT+GGG - chr1.3:41430153-41430172 None:intergenic 40.0%
TGAATTTGGCTGTGGATAAC+AGG + chr1.3:41431923-41431942 MS.gene41019:CDS 40.0%
TGCAAAGTGTGCCAAAATCA+TGG + chr1.3:41430839-41430858 MS.gene41019:intron 40.0%
TGGAATGAAAATGAAGGAGG+TGG - chr1.3:41429981-41430000 None:intergenic 40.0%
TGGGAAGTTAAAGGAAATGG+AGG - chr1.3:41429886-41429905 None:intergenic 40.0%
TGTTCTGTGTGGGAAGTTAA+AGG - chr1.3:41429895-41429914 None:intergenic 40.0%
TTCCAGCATAGATCTTGTGA+GGG - chr1.3:41431587-41431606 None:intergenic 40.0%
TTTACGACTGAATTTGGCTG+TGG + chr1.3:41431915-41431934 MS.gene41019:CDS 40.0%
TTTCCAGCATAGATCTTGTG+AGG - chr1.3:41431588-41431607 None:intergenic 40.0%
! ATTGTTGTTCTTCCTCCTCA+TGG - chr1.3:41430001-41430020 None:intergenic 40.0%
! CAAGACTACCACCATGATTT+TGG - chr1.3:41430853-41430872 None:intergenic 40.0%
! GTAGGCAAAAGGGTACAAAT+AGG + chr1.3:41431534-41431553 MS.gene41019:CDS 40.0%
! GTTGCTTTGAGTGCTATGAA+CGG + chr1.3:41431756-41431775 MS.gene41019:CDS 40.0%
! TGCAATTTGAGGGACCATTT+TGG - chr1.3:41430303-41430322 None:intergenic 40.0%
! TGCGTTTGTTACAATGGAGA+GGG + chr1.3:41430719-41430738 MS.gene41019:CDS 40.0%
! TGTACCCTTTTGCCTACTTT+GGG - chr1.3:41431531-41431550 None:intergenic 40.0%
! TTGCGTTTGTTACAATGGAG+AGG + chr1.3:41430718-41430737 MS.gene41019:CDS 40.0%
! TTGTACCCTTTTGCCTACTT+TGG - chr1.3:41431532-41431551 None:intergenic 40.0%
! TTGTTGTTGCTGTTCTGTGT+GGG - chr1.3:41429905-41429924 None:intergenic 40.0%
!! AAAGGCTTCTCTAAGATCCT+GGG - chr1.3:41431631-41431650 None:intergenic 40.0%
!!! ACTGTTTTTCAGGAGGTTCA+AGG + chr1.3:41431886-41431905 MS.gene41019:intron 40.0%
AACGGAAAATCTCGCGGATA+TGG + chr1.3:41431699-41431718 MS.gene41019:CDS 45.0%
AAGTGCCCAAAGTAGGCAAA+AGG + chr1.3:41431523-41431542 MS.gene41019:CDS 45.0%
AATGAAGGAGGTGGATGAAG+AGG - chr1.3:41429972-41429991 None:intergenic 45.0%
AGGAACAACGGAAAATCTCG+CGG + chr1.3:41431693-41431712 MS.gene41019:CDS 45.0%
AGTGCCCAAAGTAGGCAAAA+GGG + chr1.3:41431524-41431543 MS.gene41019:CDS 45.0%
ATGAAGGAGGTGGATGAAGA+GGG - chr1.3:41429971-41429990 None:intergenic 45.0%
CCGACCTTTACGACTGAATT+TGG + chr1.3:41431909-41431928 MS.gene41019:CDS 45.0%
CTATGCTGGAAACCTTGGTT+GGG + chr1.3:41431596-41431615 MS.gene41019:CDS 45.0%
CTCCAAAGAGTTGAGCCAAT+TGG - chr1.3:41430154-41430173 None:intergenic 45.0%
GATGTTGTACAGACAGTTGG+AGG + chr1.3:41431474-41431493 MS.gene41019:intron 45.0%
GTCGTCTACGAAAGGAACAA+CGG + chr1.3:41431681-41431700 MS.gene41019:CDS 45.0%
TAAGCCTGATTGCTCAGCAA+AGG - chr1.3:41431649-41431668 None:intergenic 45.0%
TCAATTACCGGAGGAGATGA+AGG - chr1.3:41431952-41431971 None:intergenic 45.0%
TCTATGCTGGAAACCTTGGT+TGG + chr1.3:41431595-41431614 MS.gene41019:CDS 45.0%
TGTACAGACAGTTGGAGGTA+GGG + chr1.3:41431479-41431498 MS.gene41019:intron 45.0%
TGTCTCTTTCGAAACTGCTG+AGG + chr1.3:41431725-41431744 MS.gene41019:CDS 45.0%
TTGTACAGACAGTTGGAGGT+AGG + chr1.3:41431478-41431497 MS.gene41019:intron 45.0%
! ATTGGCTCAACTCTTTGGAG+AGG + chr1.3:41430154-41430173 MS.gene41019:CDS 45.0%
! GTTGTTGTTGCTGTTCTGTG+TGG - chr1.3:41429906-41429925 None:intergenic 45.0%
! GTTTGTTACAATGGAGAGGG+TGG + chr1.3:41430722-41430741 MS.gene41019:CDS 45.0%
! TCCCAATTGGCTCAACTCTT+TGG + chr1.3:41430149-41430168 MS.gene41019:CDS 45.0%
!! CAAAGGCTTCTCTAAGATCC+TGG - chr1.3:41431632-41431651 None:intergenic 45.0%
!!! TGAGGGACCATTTTGGAATG+AGG - chr1.3:41430296-41430315 None:intergenic 45.0%
!!! TAATAAATTTAAGATATTTT+TGG + chr1.3:41430598-41430617 MS.gene41019:intron 5.0%
AAGAGTCTGTGGTGGCAGAT+AGG - chr1.3:41429840-41429859 None:intergenic 50.0%
AATCAGGCTTACTGAGTGCC+AGG + chr1.3:41431658-41431677 MS.gene41019:CDS 50.0%
ACAGTCTACAGTCGACTGCA+CGG - chr1.3:41432208-41432227 None:intergenic 50.0%
AGAGTCTGTGGTGGCAGATA+GGG - chr1.3:41429839-41429858 None:intergenic 50.0%
AGCCCTCACAAGATCTATGC+TGG + chr1.3:41431582-41431601 MS.gene41019:CDS 50.0%
AGGGACCACTTTGAACAGAG+GGG - chr1.3:41432051-41432070 None:intergenic 50.0%
AGTCGACTGCACGGTAAAGT+CGG - chr1.3:41432199-41432218 None:intergenic 50.0%
ATCAGGCTTACTGAGTGCCA+GGG + chr1.3:41431659-41431678 MS.gene41019:CDS 50.0%
CCTGCACTATCACTTGAACC+TGG + chr1.3:41430906-41430925 MS.gene41019:intron 50.0%
CGAAACTGCTGAGGATGTAG+AGG + chr1.3:41431734-41431753 MS.gene41019:CDS 50.0%
GAAGCCTTTGCTGAGCAATC+AGG + chr1.3:41431642-41431661 MS.gene41019:CDS 50.0%
GAGGGACCACTTTGAACAGA+GGG - chr1.3:41432052-41432071 None:intergenic 50.0%
GGGAAGTCATATCCCAACCA+AGG - chr1.3:41431611-41431630 None:intergenic 50.0%
TGAGGGACCACTTTGAACAG+AGG - chr1.3:41432053-41432072 None:intergenic 50.0%
TGCCTACTTTGGGCACTTCT+GGG - chr1.3:41431521-41431540 None:intergenic 50.0%
TGGTTGGGATATGACTTCCC+AGG + chr1.3:41431611-41431630 MS.gene41019:CDS 50.0%
TGTTACAATGGAGAGGGTGG+AGG + chr1.3:41430725-41430744 MS.gene41019:CDS 50.0%
TTGCCTACTTTGGGCACTTC+TGG - chr1.3:41431522-41431541 None:intergenic 50.0%
TTTGAGTGCTATGAACGGCG+TGG + chr1.3:41431761-41431780 MS.gene41019:CDS 50.0%
! CCAGGTTCAAGTGATAGTGC+AGG - chr1.3:41430909-41430928 None:intergenic 50.0%
! GTTTATAAGGAGGGTGCAGC+AGG - chr1.3:41430884-41430903 None:intergenic 50.0%
!! TGGCGTTGACGTGTTATGTC+AGG + chr1.3:41430458-41430477 MS.gene41019:intron 50.0%
!! TTCCCAGAAGTGCCCAAAGT+AGG + chr1.3:41431516-41431535 MS.gene41019:CDS 50.0%
ACCACTTTGAACAGAGGGGG+AGG - chr1.3:41432047-41432066 None:intergenic 55.0%
CAGGAAGCCTTCATCTCCTC+CGG + chr1.3:41431942-41431961 MS.gene41019:CDS 55.0%
GGGACCACTTTGAACAGAGG+GGG - chr1.3:41432050-41432069 None:intergenic 55.0%
GTTCCTTTCGTAGACGACCC+TGG - chr1.3:41431679-41431698 None:intergenic 55.0%
TCCTCCCCCTCTGTTCAAAG+TGG + chr1.3:41432043-41432062 MS.gene41019:intron 55.0%
TCTGTGGTGGCAGATAGGGA+AGG - chr1.3:41429835-41429854 None:intergenic 55.0%
! GCTCAACTCTTTGGAGAGGC+TGG + chr1.3:41430158-41430177 MS.gene41019:CDS 55.0%
GTGCCAGGGTCGTCTACGAA+AGG + chr1.3:41431673-41431692 MS.gene41019:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 41429810 41432230 41429810 ID=MS.gene41019
chr1.3 mRNA 41429810 41432230 41429810 ID=MS.gene41019.t1;Parent=MS.gene41019
chr1.3 exon 41429810 41430199 41429810 ID=MS.gene41019.t1.exon1;Parent=MS.gene41019.t1
chr1.3 CDS 41429810 41430199 41429810 ID=cds.MS.gene41019.t1;Parent=MS.gene41019.t1
chr1.3 exon 41430681 41430782 41430681 ID=MS.gene41019.t1.exon2;Parent=MS.gene41019.t1
chr1.3 CDS 41430681 41430782 41430681 ID=cds.MS.gene41019.t1;Parent=MS.gene41019.t1
chr1.3 exon 41431486 41431782 41431486 ID=MS.gene41019.t1.exon3;Parent=MS.gene41019.t1
chr1.3 CDS 41431486 41431782 41431486 ID=cds.MS.gene41019.t1;Parent=MS.gene41019.t1
chr1.3 exon 41431898 41431963 41431898 ID=MS.gene41019.t1.exon4;Parent=MS.gene41019.t1
chr1.3 CDS 41431898 41431963 41431898 ID=cds.MS.gene41019.t1;Parent=MS.gene41019.t1
chr1.3 exon 41432144 41432230 41432144 ID=MS.gene41019.t1.exon5;Parent=MS.gene41019.t1
chr1.3 CDS 41432144 41432230 41432144 ID=cds.MS.gene41019.t1;Parent=MS.gene41019.t1
Gene Sequence

>MS.gene41019

ATGGCTAGTGCAAGCACTGGTTCCTTCCCTATCTGCCACCACAGACTCTTCAACTTTTCCTTTACTACTCATTCCTCCATTTCCTTTAACTTCCCACACAGAACAGCAACAACAACCATTTCTACAAAACCCTTCAATTTAATCCCTCAATTATTCAACCCTCTTCATCCACCTCCTTCATTTTCATTCCATGAGGAGGAAGAACAACAATACTCTGAATCTGAATCTGAATCTGAAACTGAAATTGAAACCTTACAGAACTCAGACCTAAAACAGGAAGCAGAATCAACCCAATCAAGGAGACTCTTTGTTGGAAACTTGCCATTTTCATTATCTTCTTCCCAATTGGCTCAACTCTTTGGAGAGGCTGGAAATGTTATATCTGTGGAGGTTTCCTTCCATTCTTTTCAGTTTTTATCATTGTTTGTTTCATATATGAGGAAATACTCAAACTAGTCATTGTAAAATTGCATTAATTTAGTTCCTCATTCCAAAATGGTCCCTCAAATTGCAAAATTTTAATCAATTTAGTTCATACTTGTAGGATTGGATTGACATTTAGTTGAAACTTCTGTGCGATTACATTCAATTATGTCATTTTTTTCAATTACAGATACTTCAATTATGTCATTTTTATCAACATTGACATGGCGTTGACGTGTTATGTCAGGTGTCCATGTCTGATGTCTATGTCGATGCAATTCAAATGATTATTTTCGAATATTGATATGTGGGCTCTAGGTTGATAAAACCCTACAATTTCAAGGACAAACTTGAGTTTTGGCTTTTAATAAATTTAAGATATTTTTGGTTTTGGGATGCTGTTGTGATCTTGTTTATACCAATTTTGTTTTATTTGACTTATATGTAGATTGTGTATGATGACATCACAAATAGAAGCAGAGGATTTGCGTTTGTTACAATGGAGAGGGTGGAGGATGCTGAAGAATCAATTCGAATGTTTGATGGCACTGTAAGTCTCTATTGTTGATTACATTTTAAATATGGTATGATTGTGAAAATAAAGATTGCAAAGTGTGCCAAAATCATGGTGGTAGTCTTGCACAACAACCTGCTGCACCCTCCTTATAAACAACCTGCACTATCACTTGAACCTGGTTTATTAATTATTTAGTTTTGATGTTTTAATTAACACTGTCTTAGATTAGTATATAGTATGGTAATTTATTAATGTATTCTATTATAGATGAAGATGGACATTTAGACCATAATGATTTGGTGCTTAATCAAGGCTTAGTTGAAAATTAGTTAGGGCCAGTATCTTGTTTTCTTGTCTTATTATCATTTTGGGTATAAATTAGGCCCTGTTTGGATAAATAGCTTATTTAAGCATTTATATCATAAGTGCTTATCTATAAGTTATTTCTATAACAATATTAAATACAGTCAATCTTTCTCATATAAGCTATTATAGAGAGCTTATGAAAATAAGTTGAAATCATCTTATGGACATGTAGCCAGTTGATAAGTTTTAATAAGTCAACTCAAACAGACCAATAAATCATTTGGGAGATACCTATATCTTTTCTTGATTTAAGAAATATCTTATTCAACTAGCTTTCTGGTCCAAATTGTAAATTGCAACTCTATTGTTTACTGCATTGAACAAACTAGCAGAGTTCAATTCTAATGGTAATGGCTATGATGTTGTACAGACAGTTGGAGGTAGGGTTATTAAGGTGAACTTCCCAGAAGTGCCCAAAGTAGGCAAAAGGGTACAAATAGGCTCAAACTATAGAGGTTATGTTGACAGCCCTCACAAGATCTATGCTGGAAACCTTGGTTGGGATATGACTTCCCAGGATCTTAGAGAAGCCTTTGCTGAGCAATCAGGCTTACTGAGTGCCAGGGTCGTCTACGAAAGGAACAACGGAAAATCTCGCGGATATGGATTTGTCTCTTTCGAAACTGCTGAGGATGTAGAGGTTGCTTTGAGTGCTATGAACGGCGTGGTATGAGTGAACAACTTTTGTCCATTATTAGTTGTGCAAATTTTGTTCATCTTGTGATATTTCAATCTAATAACTATGTAACATTTTTTTGTGTGTATAATGTACTGTTTTTCAGGAGGTTCAAGGCCGACCTTTACGACTGAATTTGGCTGTGGATAACAGGAAGCCTTCATCTCCTCCGGTAATTGATCAAAATAAAGGAAATAATGTTGATAGCTTGGAAATGTTATTTGGAATAAGCAAATGAGGTATACAAGTTTTCCTCCCCCTCTGTTCAAAGTGGTCCCTCATGTCATATTTTTCTGTCAATTACTAATCATGTTGGCATACACTAACTACAAGATCAATTTCAATTATTTAGTTTTGTAATGATGGCGAGGGACTAGAGCCTAAGTCTTATACAATCGGCTTTACCGACTTTACCGTGCAGTCGACTGTAGACTGTTAG
Protein sequence

>MS.gene41019.t1

MASASTGSFPICHHRLFNFSFTTHSSISFNFPHRTATTTISTKPFNLIPQLFNPLHPPPSFSFHEEEEQQYSESESESETEIETLQNSDLKQEAESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVISVEIVYDDITNRSRGFAFVTMERVEDAEESIRMFDGTTVGGRVIKVNFPEVPKVGKRVQIGSNYRGYVDSPHKIYAGNLGWDMTSQDLREAFAEQSGLLSARVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLNLAVDNRKPSSPPFCNDGEGLEPKSYTIGFTDFTVQSTVDC