AlfalfaGEDB | MS.gene41019

M. sativa cultivar XinJiangDaYe / MS.gene41019

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00076.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41019.t1	XP_003590324.1	86.6	292	29	4	1	283	1	291	6.70E-116	427.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41019.t1	Q39061	59.7	196	74	2	101	291	117	312	1.9e-66	254.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41019.t1	G7I8I9	86.6	292	29	4	1	283	1	291	4.8e-116	427.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene41019	0.8045	2.10E-49	-1.69E-46
MS.gene049805	MS.gene41019	0.806212	9.18E-50	-1.69E-46
MS.gene051666	MS.gene41019	0.802447	5.59E-49	-1.69E-46
MS.gene051694	MS.gene41019	0.812859	3.43E-51	-1.69E-46
MS.gene053207	MS.gene41019	0.810254	1.26E-50	-1.69E-46
MS.gene053916	MS.gene41019	0.807346	5.29E-50	-1.69E-46
MS.gene06092	MS.gene41019	0.818514	1.88E-52	-1.69E-46
MS.gene061150	MS.gene41019	0.809884	1.52E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene001351	MS.gene41019	PPI
MS.gene019679	MS.gene41019	PPI
MS.gene033319	MS.gene41019	PPI
MS.gene039084	MS.gene41019	PPI
MS.gene068702	MS.gene41019	PPI
MS.gene41019	MS.gene84278	PPI
MS.gene41019	MS.gene058521	PPI
MS.gene41019	MS.gene058655	PPI
MS.gene41019	MS.gene058523	PPI
MS.gene41019	MS.gene059960	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41019.t1	MTR_1g056520	82.877	292	40	4	1	283	1	291	1.16e-163	458
MS.gene41019.t1	MTR_7g106440	57.586	290	98	7	14	284	14	297	3.09e-103	305
MS.gene41019.t1	MTR_3g027140	42.045	176	102	0	100	275	60	235	1.80e-44	152
MS.gene41019.t1	MTR_1g045510	41.935	186	100	1	94	279	107	284	2.56e-44	153
MS.gene41019.t1	MTR_1g064230	35.075	268	152	5	21	275	14	272	8.58e-42	146
MS.gene41019.t1	MTR_3g075500	39.344	183	109	2	95	277	104	284	8.69e-39	139
MS.gene41019.t1	MTR_4g104470	38.122	181	107	2	95	275	117	292	1.32e-37	135
MS.gene41019.t1	MTR_3g075500	39.881	168	99	2	95	262	104	269	6.41e-35	128
MS.gene41019.t1	MTR_5g030020	38.983	177	103	3	100	275	96	268	3.69e-29	114
MS.gene41019.t1	MTR_2g097960	29.843	191	123	3	92	279	7	189	1.47e-21	94.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41019.t1	AT3G52380	59.694	196	74	2	101	291	117	312	8.97e-86	261
MS.gene41019.t1	AT1G60000	42.857	175	93	1	101	275	86	253	2.57e-43	149
MS.gene41019.t1	AT1G60000	38.750	80	49	0	101	180	178	257	4.39e-12	65.5
MS.gene41019.t1	AT2G37220	36.916	214	121	2	76	275	67	280	3.50e-41	145
MS.gene41019.t1	AT5G50250	35.055	271	171	4	5	275	18	283	4.19e-41	144
MS.gene41019.t1	AT2G35410	40.187	214	113	5	67	276	70	272	3.71e-39	140
MS.gene41019.t1	AT3G52150	35.409	257	139	7	37	275	6	253	4.91e-39	138
MS.gene41019.t1	AT3G52150	35.409	257	139	7	37	275	6	253	4.91e-39	138
MS.gene41019.t1	AT4G24770	37.073	205	123	5	77	281	127	325	1.73e-36	134
MS.gene41019.t1	AT4G24770	37.073	205	123	5	77	281	127	325	1.73e-36	134

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Find 90 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTGAAGAGTCTGTGG+TGG	0.674091	1.3:-41429845	None:intergenic
AAAGGCTTCTCTAAGATCCT+GGG	0.581121	1.3:-41431628	None:intergenic
AACAAAGAGTCTCCTTGATT+GGG	0.407980	1.3:-41430099	None:intergenic
AACGGAAAATCTCGCGGATA+TGG	0.262481	1.3:+41431699	MS.gene41019:CDS
AAGAGTCTGTGGTGGCAGAT+AGG	0.457732	1.3:-41429837	None:intergenic
AAGATCTATGCTGGAAACCT+TGG	0.486607	1.3:+41431591	MS.gene41019:CDS
AAGCAGAATCAACCCAATCA+AGG	0.531753	1.3:+41430087	MS.gene41019:CDS
AAGCCGATTGTATAAGACTT+AGG	0.544286	1.3:-41432171	None:intergenic
AAGTGCCCAAAGTAGGCAAA+AGG	0.446953	1.3:+41431523	MS.gene41019:CDS
AATCAGGCTTACTGAGTGCC+AGG	0.450781	1.3:+41431658	MS.gene41019:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGACAAGAAAACAAGATAC+TGG	-	chr1.3:41431088-41431107	None:intergenic	30.0%
AAGTTTGTCCTTGAAATTGT+AGG	-	chr1.3:41430565-41430584	None:intergenic	30.0%
AGTTTGTCCTTGAAATTGTA+GGG	-	chr1.3:41430564-41430583	None:intergenic	30.0%
CCGGTAATTGATCAAAATAA+AGG	+	chr1.3:41431961-41431980	MS.gene41019:intron	30.0%
CTGTCAATTACTAATCATGT+TGG	+	chr1.3:41432085-41432104	MS.gene41019:intron	30.0%
GAATCAATTCGAATGTTTGA+TGG	+	chr1.3:41430756-41430775	MS.gene41019:CDS	30.0%
GACAGAAAAATATGACATGA+GGG	-	chr1.3:41432070-41432089	None:intergenic	30.0%
GAGTTCAATTCTAATGGTAA+TGG	+	chr1.3:41431447-41431466	MS.gene41019:intron	30.0%
GATAAAACCCTACAATTTCA+AGG	+	chr1.3:41430554-41430573	MS.gene41019:intron	30.0%
GATAGCTTGGAAATGTTATT+TGG	+	chr1.3:41431994-41432013	MS.gene41019:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	41429810	41432230	41429810	ID=MS.gene41019
chr1.3	mRNA	41429810	41432230	41429810	ID=MS.gene41019.t1;Parent=MS.gene41019
chr1.3	exon	41429810	41430199	41429810	ID=MS.gene41019.t1.exon1;Parent=MS.gene41019.t1
chr1.3	CDS	41429810	41430199	41429810	ID=cds.MS.gene41019.t1;Parent=MS.gene41019.t1
chr1.3	exon	41430681	41430782	41430681	ID=MS.gene41019.t1.exon2;Parent=MS.gene41019.t1
chr1.3	CDS	41430681	41430782	41430681	ID=cds.MS.gene41019.t1;Parent=MS.gene41019.t1
chr1.3	exon	41431486	41431782	41431486	ID=MS.gene41019.t1.exon3;Parent=MS.gene41019.t1
chr1.3	CDS	41431486	41431782	41431486	ID=cds.MS.gene41019.t1;Parent=MS.gene41019.t1
chr1.3	exon	41431898	41431963	41431898	ID=MS.gene41019.t1.exon4;Parent=MS.gene41019.t1
chr1.3	CDS	41431898	41431963	41431898	ID=cds.MS.gene41019.t1;Parent=MS.gene41019.t1
chr1.3	exon	41432144	41432230	41432144	ID=MS.gene41019.t1.exon5;Parent=MS.gene41019.t1
chr1.3	CDS	41432144	41432230	41432144	ID=cds.MS.gene41019.t1;Parent=MS.gene41019.t1

Gene Sequence

>MS.gene41019

ATGGCTAGTGCAAGCACTGGTTCCTTCCCTATCTGCCACCACAGACTCTTCAACTTTTCCTTTACTACTCATTCCTCCATTTCCTTTAACTTCCCACACAGAACAGCAACAACAACCATTTCTACAAAACCCTTCAATTTAATCCCTCAATTATTCAACCCTCTTCATCCACCTCCTTCATTTTCATTCCATGAGGAGGAAGAACAACAATACTCTGAATCTGAATCTGAATCTGAAACTGAAATTGAAACCTTACAGAACTCAGACCTAAAACAGGAAGCAGAATCAACCCAATCAAGGAGACTCTTTGTTGGAAACTTGCCATTTTCATTATCTTCTTCCCAATTGGCTCAACTCTTTGGAGAGGCTGGAAATGTTATATCTGTGGAGGTTTCCTTCCATTCTTTTCAGTTTTTATCATTGTTTGTTTCATATATGAGGAAATACTCAAACTAGTCATTGTAAAATTGCATTAATTTAGTTCCTCATTCCAAAATGGTCCCTCAAATTGCAAAATTTTAATCAATTTAGTTCATACTTGTAGGATTGGATTGACATTTAGTTGAAACTTCTGTGCGATTACATTCAATTATGTCATTTTTTTCAATTACAGATACTTCAATTATGTCATTTTTATCAACATTGACATGGCGTTGACGTGTTATGTCAGGTGTCCATGTCTGATGTCTATGTCGATGCAATTCAAATGATTATTTTCGAATATTGATATGTGGGCTCTAGGTTGATAAAACCCTACAATTTCAAGGACAAACTTGAGTTTTGGCTTTTAATAAATTTAAGATATTTTTGGTTTTGGGATGCTGTTGTGATCTTGTTTATACCAATTTTGTTTTATTTGACTTATATGTAGATTGTGTATGATGACATCACAAATAGAAGCAGAGGATTTGCGTTTGTTACAATGGAGAGGGTGGAGGATGCTGAAGAATCAATTCGAATGTTTGATGGCACTGTAAGTCTCTATTGTTGATTACATTTTAAATATGGTATGATTGTGAAAATAAAGATTGCAAAGTGTGCCAAAATCATGGTGGTAGTCTTGCACAACAACCTGCTGCACCCTCCTTATAAACAACCTGCACTATCACTTGAACCTGGTTTATTAATTATTTAGTTTTGATGTTTTAATTAACACTGTCTTAGATTAGTATATAGTATGGTAATTTATTAATGTATTCTATTATAGATGAAGATGGACATTTAGACCATAATGATTTGGTGCTTAATCAAGGCTTAGTTGAAAATTAGTTAGGGCCAGTATCTTGTTTTCTTGTCTTATTATCATTTTGGGTATAAATTAGGCCCTGTTTGGATAAATAGCTTATTTAAGCATTTATATCATAAGTGCTTATCTATAAGTTATTTCTATAACAATATTAAATACAGTCAATCTTTCTCATATAAGCTATTATAGAGAGCTTATGAAAATAAGTTGAAATCATCTTATGGACATGTAGCCAGTTGATAAGTTTTAATAAGTCAACTCAAACAGACCAATAAATCATTTGGGAGATACCTATATCTTTTCTTGATTTAAGAAATATCTTATTCAACTAGCTTTCTGGTCCAAATTGTAAATTGCAACTCTATTGTTTACTGCATTGAACAAACTAGCAGAGTTCAATTCTAATGGTAATGGCTATGATGTTGTACAGACAGTTGGAGGTAGGGTTATTAAGGTGAACTTCCCAGAAGTGCCCAAAGTAGGCAAAAGGGTACAAATAGGCTCAAACTATAGAGGTTATGTTGACAGCCCTCACAAGATCTATGCTGGAAACCTTGGTTGGGATATGACTTCCCAGGATCTTAGAGAAGCCTTTGCTGAGCAATCAGGCTTACTGAGTGCCAGGGTCGTCTACGAAAGGAACAACGGAAAATCTCGCGGATATGGATTTGTCTCTTTCGAAACTGCTGAGGATGTAGAGGTTGCTTTGAGTGCTATGAACGGCGTGGTATGAGTGAACAACTTTTGTCCATTATTAGTTGTGCAAATTTTGTTCATCTTGTGATATTTCAATCTAATAACTATGTAACATTTTTTTGTGTGTATAATGTACTGTTTTTCAGGAGGTTCAAGGCCGACCTTTACGACTGAATTTGGCTGTGGATAACAGGAAGCCTTCATCTCCTCCGGTAATTGATCAAAATAAAGGAAATAATGTTGATAGCTTGGAAATGTTATTTGGAATAAGCAAATGAGGTATACAAGTTTTCCTCCCCCTCTGTTCAAAGTGGTCCCTCATGTCATATTTTTCTGTCAATTACTAATCATGTTGGCATACACTAACTACAAGATCAATTTCAATTATTTAGTTTTGTAATGATGGCGAGGGACTAGAGCCTAAGTCTTATACAATCGGCTTTACCGACTTTACCGTGCAGTCGACTGTAGACTGTTAG

Protein sequence

>MS.gene41019.t1

MASASTGSFPICHHRLFNFSFTTHSSISFNFPHRTATTTISTKPFNLIPQLFNPLHPPPSFSFHEEEEQQYSESESESETEIETLQNSDLKQEAESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVISVEIVYDDITNRSRGFAFVTMERVEDAEESIRMFDGTTVGGRVIKVNFPEVPKVGKRVQIGSNYRGYVDSPHKIYAGNLGWDMTSQDLREAFAEQSGLLSARVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLNLAVDNRKPSSPPFCNDGEGLEPKSYTIGFTDFTVQSTVDC