Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059494.t1 | XP_003588461.2 | 87.1 | 286 | 8 | 2 | 1 | 257 | 107 | 392 | 2.50E-129 | 471.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059494.t1 | Q1H5E9 | 72.3 | 289 | 47 | 3 | 1 | 256 | 109 | 397 | 9.9e-106 | 384.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059494.t1 | G7I294 | 87.1 | 286 | 8 | 2 | 1 | 257 | 107 | 392 | 1.8e-129 | 471.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059492 | MS.gene059494 | 0.938927 | 2.99E-99 | -1.69E-46 |
| MS.gene059494 | MS.gene56719 | 0.869658 | 2.63E-66 | -1.69E-46 |
| MS.gene059494 | MS.gene56721 | 0.883817 | 3.25E-71 | -1.69E-46 |
| MS.gene059494 | MS.gene56759 | 0.916694 | 1.31E-85 | -1.69E-46 |
| MS.gene059494 | MS.gene56761 | 0.932584 | 6.84E-95 | -1.69E-46 |
| MS.gene059494 | MS.gene56763 | 0.894227 | 3.01E-75 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059494.t1 | MTR_1g007490 | 87.063 | 286 | 8 | 2 | 1 | 257 | 107 | 392 | 2.06e-177 | 493 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059494.t1 | AT5G48470 | 72.318 | 289 | 47 | 3 | 1 | 256 | 109 | 397 | 1.53e-142 | 405 |
Find 0 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATGCATAAAATTAGAAAT+AGG | + | 10788:11812-11831 | None:intergenic | 15.0% |
| !! | AATCTATTACAATCTACATT+TGG | - | 10788:9965-9984 | MS.gene059494:intron | 20.0% |
| !! | AGATTGTAATAGATTATAGT+TGG | + | 10788:9960-9979 | None:intergenic | 20.0% |
| !! | ATATTTATCACTCAATTGAA+AGG | + | 10788:10695-10714 | None:intergenic | 20.0% |
| !! | CCATATAATTGTAAAATACT+TGG | - | 10788:11477-11496 | MS.gene059494:intron | 20.0% |
| !! | GTTATCAAAATAAAACAGTT+TGG | + | 10788:11533-11552 | None:intergenic | 20.0% |
| !!! | AAAAATAGAAAAGTATCAAC+TGG | + | 10788:11647-11666 | None:intergenic | 20.0% |
| !!! | CCAAGTATTTTACAATTATA+TGG | + | 10788:11480-11499 | None:intergenic | 20.0% |
| !!! | TGTGTAGATTTAAAACTAAA+TGG | - | 10788:11021-11040 | MS.gene059494:intron | 20.0% |
| ! | AATAGAAACATTTGTGGATT+TGG | + | 10788:11755-11774 | None:intergenic | 25.0% |
| ! | ACCATTCATCATAAAAACTA+TGG | + | 10788:11429-11448 | None:intergenic | 25.0% |
| ! | AGTTGAAAATTTCACTCTAT+TGG | - | 10788:11503-11522 | MS.gene059494:intron | 25.0% |
| ! | ATATATCAAGAACTGAGTAT+GGG | + | 10788:11561-11580 | None:intergenic | 25.0% |
| ! | GATTAATTGTTTACAGACAA+TGG | - | 10788:10768-10787 | MS.gene059494:CDS | 25.0% |
| ! | GTTGAAAATTTCACTCTATT+GGG | - | 10788:11504-11523 | MS.gene059494:intron | 25.0% |
| ! | TACAATTATATGGAATTCTC+AGG | + | 10788:11470-11489 | None:intergenic | 25.0% |
| ! | TAGAAATAGGTATTTATGAC+AGG | + | 10788:11799-11818 | None:intergenic | 25.0% |
| ! | TATATATCAAGAACTGAGTA+TGG | + | 10788:11562-11581 | None:intergenic | 25.0% |
| ! | TGTATGATAGAGTAATAATC+AGG | + | 10788:11586-11605 | None:intergenic | 25.0% |
| ! | TTAAACAACTGTATGAATGA+AGG | + | 10788:10468-10487 | None:intergenic | 25.0% |
| ! | TTCGAATGAAAAACAAAGTT+TGG | - | 10788:12087-12106 | MS.gene059494:intron | 25.0% |
| ! | TTGAAAATTTCACTCTATTG+GGG | - | 10788:11505-11524 | MS.gene059494:intron | 25.0% |
| ! | TTTGGAAATAGAAACATTTG+TGG | + | 10788:11761-11780 | None:intergenic | 25.0% |
| !! | AATTTGTCGTTTGTGTTAAA+AGG | - | 10788:10976-10995 | MS.gene059494:intron | 25.0% |
| !! | ATTTGTCGTTTGTGTTAAAA+GGG | - | 10788:10977-10996 | MS.gene059494:intron | 25.0% |
| !!! | ATCTTTTAGGTTCAAGTAAT+TGG | - | 10788:10245-10264 | MS.gene059494:intron | 25.0% |
| !!! | TGGCTTGTTACTTTATAATA+TGG | + | 10788:12131-12150 | None:intergenic | 25.0% |
| AAGGATAGAAAAAGTTAACC+AGG | + | 10788:10676-10695 | None:intergenic | 30.0% | |
| ACCGATATTTAATTAGCTCA+CGG | - | 10788:11885-11904 | MS.gene059494:intron | 30.0% | |
| AGTGGATCATGATGATTTAA+TGG | + | 10788:12151-12170 | None:intergenic | 30.0% | |
| ATATTTAATTAGCTCACGGA+AGG | - | 10788:11889-11908 | MS.gene059494:intron | 30.0% | |
| ATCGAAATATATGCACAGTT+AGG | + | 10788:10066-10085 | None:intergenic | 30.0% | |
| ATGATAAGAAATGTGATGCT+CGG | - | 10788:11152-11171 | MS.gene059494:CDS | 30.0% | |
| ATTATTAAGCTTGGTCTGTT+AGG | + | 10788:10020-10039 | None:intergenic | 30.0% | |
| GAACTTCTTAACTAAATTGG+TGG | - | 10788:11101-11120 | MS.gene059494:CDS | 30.0% | |
| GGTGAACTTCTTAACTAAAT+TGG | - | 10788:11098-11117 | MS.gene059494:CDS | 30.0% | |
| GTCGCAAAAAAATATGCTTT+CGG | - | 10788:11050-11069 | MS.gene059494:CDS | 30.0% | |
| TACTTGAACCTAAAAGATGA+AGG | + | 10788:10243-10262 | None:intergenic | 30.0% | |
| TCCGTGAGCTAATTAAATAT+CGG | + | 10788:11889-11908 | None:intergenic | 30.0% | |
| TGGTATACAACATTACAACT+TGG | + | 10788:10208-10227 | None:intergenic | 30.0% | |
| TTAAAAATCATAAGAGACGC+AGG | + | 10788:12012-12031 | None:intergenic | 30.0% | |
| TTATTAAGCTTGGTCTGTTA+GGG | + | 10788:10019-10038 | None:intergenic | 30.0% | |
| ! | AACAGTGTTTAAAATTCACG+TGG | + | 10788:10747-10766 | None:intergenic | 30.0% |
| ! | AGGTTGTATGCACATTATTT+TGG | + | 10788:11779-11798 | None:intergenic | 30.0% |
| ! | GCCATAGTTTTTATGATGAA+TGG | - | 10788:11425-11444 | MS.gene059494:intron | 30.0% |
| ! | TCATATCTGCTTTCCTTTTT+GGG | + | 10788:10287-10306 | None:intergenic | 30.0% |
| ! | TTCATATCTGCTTTCCTTTT+TGG | + | 10788:10288-10307 | None:intergenic | 30.0% |
| !!! | GATACTTTTCTATTTTTGCC+AGG | - | 10788:11650-11669 | MS.gene059494:CDS | 30.0% |
| AAAAGACAGAAGTCATTCAG+TGG | + | 10788:12169-12188 | None:intergenic | 35.0% | |
| AAGGTCGATCATGTAATCAA+GGG | + | 10788:9833-9852 | None:intergenic | 35.0% | |
| ACTTCTATCAAGTTCTGTAG+AGG | - | 10788:10511-10530 | MS.gene059494:intron | 35.0% | |
| ACTTGAAGATTCATATCCCA+GGG | - | 10788:10358-10377 | MS.gene059494:intron | 35.0% | |
| AGTTAAATGCTATCTCCTGA+AGG | + | 10788:12236-12255 | None:intergenic | 35.0% | |
| ATATATGCTGGATCTGACAA+TGG | - | 10788:11684-11703 | MS.gene059494:CDS | 35.0% | |
| CTATATCTGAATTCTTGCCA+AGG | - | 10788:10718-10737 | MS.gene059494:intron | 35.0% | |
| CTTAAAGAAGTTCCTTACCT+GGG | + | 10788:10157-10176 | None:intergenic | 35.0% | |
| GAATTTACACCTTATCATCC+TGG | + | 10788:9867-9886 | None:intergenic | 35.0% | |
| GAGGTAGAGTATATAATCCA+CGG | + | 10788:10900-10919 | None:intergenic | 35.0% | |
| TAAAATTCACGTGGTTTCCT+TGG | + | 10788:10738-10757 | None:intergenic | 35.0% | |
| TAGAGGTTCTCAATATTGGA+GGG | - | 10788:10528-10547 | MS.gene059494:intron | 35.0% | |
| TCGTTTGTGTTAAAAGGGAT+TGG | - | 10788:10982-11001 | MS.gene059494:intron | 35.0% | |
| TCTAAATGACATAGCTAACC+AGG | - | 10788:10385-10404 | MS.gene059494:intron | 35.0% | |
| TCTATGTAGAACTCCCAAAA+AGG | - | 10788:10271-10290 | MS.gene059494:CDS | 35.0% | |
| TCTGTAGAGGTTCTCAATAT+TGG | - | 10788:10524-10543 | MS.gene059494:intron | 35.0% | |
| TGAGTTGCGATTATTAAGCT+TGG | + | 10788:10029-10048 | None:intergenic | 35.0% | |
| TGGATTATATACTCTACCTC+CGG | - | 10788:10900-10919 | MS.gene059494:intron | 35.0% | |
| TTAAAGAAGTTCCTTACCTG+GGG | + | 10788:10156-10175 | None:intergenic | 35.0% | |
| TTCGGCATCATTAAAACTGT+TGG | - | 10788:11068-11087 | MS.gene059494:CDS | 35.0% | |
| TTGAACCTAAAAGATGAAGG+AGG | + | 10788:10240-10259 | None:intergenic | 35.0% | |
| ! | ATTTTCCTCTAGGTACAAGT+TGG | + | 10788:12053-12072 | None:intergenic | 35.0% |
| ! | TCAAAACTGCATTTTCCTCT+AGG | + | 10788:12063-12082 | None:intergenic | 35.0% |
| !! | ATCAGAAAGTGTTTGAGAAG+TGG | + | 10788:10180-10199 | None:intergenic | 35.0% |
| AAAGACACTTCAAGTCCTTC+AGG | - | 10788:12218-12237 | MS.gene059494:CDS | 40.0% | |
| ACACTCCATTCCATTTGGAA+AGG | - | 10788:9931-9950 | MS.gene059494:intron | 40.0% | |
| ACTTGTCTGTCATGATATCC+AGG | - | 10788:11327-11346 | MS.gene059494:intron | 40.0% | |
| AGAATCTGAGAAAGTAGCAG+TGG | - | 10788:9744-9763 | MS.gene059494:CDS | 40.0% | |
| ATCAAGGGCCATCATGAAAT+CGG | + | 10788:9818-9837 | None:intergenic | 40.0% | |
| ATTAAAACTGTTGGCAGTGC+AGG | - | 10788:11077-11096 | MS.gene059494:CDS | 40.0% | |
| CAAAACCAACTTGTACCTAG+AGG | - | 10788:12045-12064 | MS.gene059494:intron | 40.0% | |
| CAAGGTCGATCATGTAATCA+AGG | + | 10788:9834-9853 | None:intergenic | 40.0% | |
| CATATATACCAGACAAGACC+TGG | + | 10788:11671-11690 | None:intergenic | 40.0% | |
| CCAGGCTGATGATTTATTAG+AGG | - | 10788:10403-10422 | MS.gene059494:intron | 40.0% | |
| CCTCTAATAAATCATCAGCC+TGG | + | 10788:10406-10425 | None:intergenic | 40.0% | |
| CTTGAAGATTCATATCCCAG+GGG | - | 10788:10359-10378 | MS.gene059494:intron | 40.0% | |
| GACTTGAAGATTCATATCCC+AGG | - | 10788:10357-10376 | MS.gene059494:intron | 40.0% | |
| GATATTGCACTTGAAAGACG+CGG | + | 10788:10614-10633 | None:intergenic | 40.0% | |
| GATGGAATCCGATTTCATGA+TGG | - | 10788:9807-9826 | MS.gene059494:intron | 40.0% | |
| GCTTAAAGAAGTTCCTTACC+TGG | + | 10788:10158-10177 | None:intergenic | 40.0% | |
| GTAGAGGTTCTCAATATTGG+AGG | - | 10788:10527-10546 | MS.gene059494:intron | 40.0% | |
| GTCTTGTCTGGTATATATGC+TGG | - | 10788:11672-11691 | MS.gene059494:CDS | 40.0% | |
| GTTTCTCGAAACAGTCTCTA+AGG | - | 10788:11393-11412 | MS.gene059494:intron | 40.0% | |
| TAGTTGGAGACCTTTCCAAA+TGG | + | 10788:9944-9963 | None:intergenic | 40.0% | |
| TTGGATGAAAGAAATGACCG+TGG | - | 10788:10880-10899 | MS.gene059494:intron | 40.0% | |
| TTTCCAAATGGAATGGAGTG+TGG | + | 10788:9932-9951 | None:intergenic | 40.0% | |
| TTTGATGAACCTGCAAGCAA+AGG | + | 10788:12200-12219 | None:intergenic | 40.0% | |
| ! | AAATTGGTGGCCTTAAAACC+TGG | - | 10788:11114-11133 | MS.gene059494:CDS | 40.0% |
| ! | AATTGGTGGCCTTAAAACCT+GGG | - | 10788:11115-11134 | MS.gene059494:CDS | 40.0% |
| ! | ATGTCATTTAGATTGCCCCT+GGG | + | 10788:10377-10396 | None:intergenic | 40.0% |
| ! | GAACTCCTCCTTCATCTTTT+AGG | - | 10788:10232-10251 | MS.gene059494:intron | 40.0% |
| ! | TATGTCATTTAGATTGCCCC+TGG | + | 10788:10378-10397 | None:intergenic | 40.0% |
| ! | TGGTAAGAGAGTTGATCAGA+TGG | - | 10788:9789-9808 | MS.gene059494:intron | 40.0% |
| !! | TATTTTTGCCAGGTCTTGTC+TGG | - | 10788:11660-11679 | MS.gene059494:CDS | 40.0% |
| !! | TTCAGTAGGATTTGCTGGAA+GGG | - | 10788:11223-11242 | MS.gene059494:intron | 40.0% |
| !! | TTTCAGTAGGATTTGCTGGA+AGG | - | 10788:11222-11241 | MS.gene059494:intron | 40.0% |
| !!! | CTCTAGGTACAAGTTGGTTT+TGG | + | 10788:12047-12066 | None:intergenic | 40.0% |
| !!! | TAGGTACAAGTTGGTTTTGG+TGG | + | 10788:12044-12063 | None:intergenic | 40.0% |
| AACTAAAAAATGCCCACCCC+AGG | - | 10788:10137-10156 | MS.gene059494:intron | 45.0% | |
| ACTGTTTCGAGAAACATGCC+CGG | + | 10788:11388-11407 | None:intergenic | 45.0% | |
| AGAAGAAGCCCGTGATATGA+TGG | - | 10788:10846-10865 | MS.gene059494:intron | 45.0% | |
| AGGGTTTCAGTAGGATTTGC+TGG | - | 10788:11218-11237 | MS.gene059494:intron | 45.0% | |
| CAGATCGAAAACTGCTTGCA+AGG | - | 10788:10809-10828 | MS.gene059494:CDS | 45.0% | |
| CATCCACACTCCATTCCATT+TGG | - | 10788:9926-9945 | MS.gene059494:intron | 45.0% | |
| GAAGAAGCCCGTGATATGAT+GGG | - | 10788:10847-10866 | MS.gene059494:intron | 45.0% | |
| GATGAAGGAGGAGTTCACAT+TGG | + | 10788:10228-10247 | None:intergenic | 45.0% | |
| GATGATGACAGGGTTTCAGT+AGG | - | 10788:11209-11228 | MS.gene059494:intron | 45.0% | |
| GGAGACCTTTCCAAATGGAA+TGG | + | 10788:9939-9958 | None:intergenic | 45.0% | |
| GTGATGCTCGGAAAAGATGA+AGG | - | 10788:11164-11183 | MS.gene059494:CDS | 45.0% | |
| TAAAACCTGGGAAGTTGTGC+TGG | - | 10788:11127-11146 | MS.gene059494:CDS | 45.0% | |
| TCACATCAACATACCTCAGC+CGG | + | 10788:10922-10941 | None:intergenic | 45.0% | |
| TCACTGCACAACATCTGGAA+TGG | - | 10788:11709-11728 | MS.gene059494:intron | 45.0% | |
| TGAACCTGCAAGCAAAGGAA+AGG | + | 10788:12195-12214 | None:intergenic | 45.0% | |
| TGAGAAAGTAGCAGTGGAGT+TGG | - | 10788:9750-9769 | MS.gene059494:intron | 45.0% | |
| TGAGAAGGACCAGGATGATA+AGG | - | 10788:9855-9874 | MS.gene059494:intron | 45.0% | |
| TGGTATCACTGCACAACATC+TGG | - | 10788:11704-11723 | MS.gene059494:CDS | 45.0% | |
| TGTTCCTTTCCTTTGCTTGC+AGG | - | 10788:12188-12207 | MS.gene059494:CDS | 45.0% | |
| TTAAATAAACCGCCACCAGC+TGG | + | 10788:10327-10346 | None:intergenic | 45.0% | |
| TTAGCTCACGGAAGGTAACT+AGG | - | 10788:11897-11916 | MS.gene059494:intron | 45.0% | |
| TTGGCTGCACAAGGAGTTAT+TGG | - | 10788:9769-9788 | MS.gene059494:intron | 45.0% | |
| ! | AGTTTTCGATCTGGCACAAC+AGG | + | 10788:10802-10821 | None:intergenic | 45.0% |
| ! | CACTGCACAACATCTGGAAT+GGG | - | 10788:11710-11729 | MS.gene059494:intron | 45.0% |
| ! | CTTGCAAGCAGTTTTCGATC+TGG | + | 10788:10811-10830 | None:intergenic | 45.0% |
| ! | GCACAACTTCCCAGGTTTTA+AGG | + | 10788:11127-11146 | None:intergenic | 45.0% |
| ! | TCAACTGGAAGTGCAAACAC+AGG | + | 10788:11632-11651 | None:intergenic | 45.0% |
| ! | TGGCAACGATGATGATGACA+GGG | - | 10788:11199-11218 | MS.gene059494:intron | 45.0% |
| !! | CCAGAAGCTTCTAAAATGCC+TGG | - | 10788:10655-10674 | MS.gene059494:intron | 45.0% |
| !! | CCAGGCATTTTAGAAGCTTC+TGG | + | 10788:10658-10677 | None:intergenic | 45.0% |
| !! | GCTGGTGGCGGTTTATTTAA+AGG | - | 10788:10327-10346 | MS.gene059494:intron | 45.0% |
| AAAAATGCCCACCCCAGGTA+AGG | - | 10788:10142-10161 | MS.gene059494:intron | 50.0% | |
| AAGAAGTTCCTTACCTGGGG+TGG | + | 10788:10153-10172 | None:intergenic | 50.0% | |
| AGAAGTTCCTTACCTGGGGT+GGG | + | 10788:10152-10171 | None:intergenic | 50.0% | |
| AGTGCAAACACAGGCAGAGA+AGG | + | 10788:11623-11642 | None:intergenic | 50.0% | |
| ATATACTCTACCTCCGGCTG+AGG | - | 10788:10906-10925 | MS.gene059494:intron | 50.0% | |
| ATCGCAACTCACACACATGC+TGG | - | 10788:10038-10057 | MS.gene059494:intron | 50.0% | |
| CATATCCAGCACAACTTCCC+AGG | + | 10788:11135-11154 | None:intergenic | 50.0% | |
| CATGATCGACCTTGCTGAGA+AGG | - | 10788:9840-9859 | MS.gene059494:intron | 50.0% | |
| CTGTTTCGAGAAACATGCCC+GGG | + | 10788:11387-11406 | None:intergenic | 50.0% | |
| GATATCCAGGCAAGTGTGAC+AGG | - | 10788:11340-11359 | MS.gene059494:intron | 50.0% | |
| GTGAGTCGAATTGGATGACG+TGG | - | 10788:11245-11264 | MS.gene059494:intron | 50.0% | |
| TCGCAACTCACACACATGCT+GGG | - | 10788:10039-10058 | MS.gene059494:intron | 50.0% | |
| ! | AAGCCCGTGATATGATGGGA+GGG | - | 10788:10851-10870 | MS.gene059494:intron | 50.0% |
| ! | CTGGCAACGATGATGATGAC+AGG | - | 10788:11198-11217 | MS.gene059494:intron | 50.0% |
| ! | GATGAAGGTGCAGACAACAC+TGG | - | 10788:11179-11198 | MS.gene059494:intron | 50.0% |
| !! | TATGATGGGAGGGGGGATTT+TGG | - | 10788:10861-10880 | MS.gene059494:intron | 50.0% |
| !!! | AGTTGGTTTTGGTGGCAACG+TGG | + | 10788:12036-12055 | None:intergenic | 50.0% |
| CATCAACATACCTCAGCCGG+AGG | + | 10788:10919-10938 | None:intergenic | 55.0% | |
| CATCCTGGTCCTTCTCAGCA+AGG | + | 10788:9852-9871 | None:intergenic | 55.0% | |
| GATGCAGCGCAAGTCACTGT+TGG | - | 10788:10083-10102 | MS.gene059494:intron | 55.0% | |
| GCTGGAAGGGTGAGTCGAAT+TGG | - | 10788:11236-11255 | MS.gene059494:intron | 55.0% | |
| TCCAGGCAAGTGTGACAGGA+CGG | - | 10788:11344-11363 | MS.gene059494:intron | 55.0% | |
| TCCCCCCTCCCATCATATCA+CGG | + | 10788:10858-10877 | None:intergenic | 55.0% | |
| ! | AGCCCGTGATATGATGGGAG+GGG | - | 10788:10852-10871 | MS.gene059494:intron | 55.0% |
| ! | GAAGCCCGTGATATGATGGG+AGG | - | 10788:10850-10869 | MS.gene059494:intron | 55.0% |
| AGAAACATGCCCGGGCGTAC+GGG | + | 10788:11379-11398 | None:intergenic | 60.0% | |
| CCCCCCTCCCATCATATCAC+GGG | + | 10788:10857-10876 | None:intergenic | 60.0% | |
| CGACCTTGCTGAGAAGGACC+AGG | - | 10788:9846-9865 | MS.gene059494:intron | 60.0% | |
| GAGAAACATGCCCGGGCGTA+CGG | + | 10788:11380-11399 | None:intergenic | 60.0% | |
| GCAGTGGAGTTGGCTGCACA+AGG | - | 10788:9760-9779 | MS.gene059494:intron | 60.0% | |
| TCCGTCCTGTCACACTTGCC+TGG | + | 10788:11348-11367 | None:intergenic | 60.0% | |
| TGTTACGCCGAGTTGCCAGC+TGG | - | 10788:10309-10328 | MS.gene059494:intron | 60.0% | |
| ! | CCCGTGATATGATGGGAGGG+GGG | - | 10788:10854-10873 | MS.gene059494:intron | 60.0% |
| ! | GCCCGTGATATGATGGGAGG+GGG | - | 10788:10853-10872 | MS.gene059494:intron | 60.0% |
| AAGCCACATCCCGTACGCCC+GGG | - | 10788:11367-11386 | MS.gene059494:intron | 65.0% | |
| ACCGCCACCAGCTGGCAACT+CGG | + | 10788:10319-10338 | None:intergenic | 65.0% | |
| GAAGCCACATCCCGTACGCC+CGG | - | 10788:11366-11385 | MS.gene059494:intron | 65.0% | |
| TACGCCGAGTTGCCAGCTGG+TGG | - | 10788:10312-10331 | MS.gene059494:intron | 65.0% | |
| ATGCCCGGGCGTACGGGATG+TGG | + | 10788:11373-11392 | None:intergenic | 70.0% | |
| GCCGAGTTGCCAGCTGGTGG+CGG | - | 10788:10315-10334 | MS.gene059494:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 10788 | gene | 9721 | 12257 | 9721 | ID=MS.gene059494 |
| 10788 | mRNA | 9721 | 12257 | 9721 | ID=MS.gene059494.t1;Parent=MS.gene059494 |
| 10788 | exon | 12102 | 12257 | 12102 | ID=MS.gene059494.t1.exon1;Parent=MS.gene059494.t1 |
| 10788 | CDS | 12102 | 12257 | 12102 | ID=cds.MS.gene059494.t1;Parent=MS.gene059494.t1 |
| 10788 | exon | 11820 | 11888 | 11820 | ID=MS.gene059494.t1.exon2;Parent=MS.gene059494.t1 |
| 10788 | CDS | 11820 | 11888 | 11820 | ID=cds.MS.gene059494.t1;Parent=MS.gene059494.t1 |
| 10788 | exon | 11648 | 11724 | 11648 | ID=MS.gene059494.t1.exon3;Parent=MS.gene059494.t1 |
| 10788 | CDS | 11648 | 11724 | 11648 | ID=cds.MS.gene059494.t1;Parent=MS.gene059494.t1 |
| 10788 | exon | 11554 | 11599 | 11554 | ID=MS.gene059494.t1.exon4;Parent=MS.gene059494.t1 |
| 10788 | CDS | 11554 | 11599 | 11554 | ID=cds.MS.gene059494.t1;Parent=MS.gene059494.t1 |
| 10788 | exon | 11047 | 11194 | 11047 | ID=MS.gene059494.t1.exon5;Parent=MS.gene059494.t1 |
| 10788 | CDS | 11047 | 11194 | 11047 | ID=cds.MS.gene059494.t1;Parent=MS.gene059494.t1 |
| 10788 | exon | 10734 | 10837 | 10734 | ID=MS.gene059494.t1.exon6;Parent=MS.gene059494.t1 |
| 10788 | CDS | 10734 | 10837 | 10734 | ID=cds.MS.gene059494.t1;Parent=MS.gene059494.t1 |
| 10788 | exon | 10564 | 10629 | 10564 | ID=MS.gene059494.t1.exon7;Parent=MS.gene059494.t1 |
| 10788 | CDS | 10564 | 10629 | 10564 | ID=cds.MS.gene059494.t1;Parent=MS.gene059494.t1 |
| 10788 | exon | 10247 | 10306 | 10247 | ID=MS.gene059494.t1.exon8;Parent=MS.gene059494.t1 |
| 10788 | CDS | 10247 | 10306 | 10247 | ID=cds.MS.gene059494.t1;Parent=MS.gene059494.t1 |
| 10788 | exon | 9721 | 9768 | 9721 | ID=MS.gene059494.t1.exon9;Parent=MS.gene059494.t1 |
| 10788 | CDS | 9721 | 9768 | 9721 | ID=cds.MS.gene059494.t1;Parent=MS.gene059494.t1 |
| Gene Sequence |
| Protein sequence |
