Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56719.t1 | XP_003588461.2 | 98.1 | 268 | 5 | 0 | 1 | 268 | 110 | 377 | 3.80E-144 | 520.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56719.t1 | Q1H5E9 | 80.1 | 272 | 50 | 1 | 1 | 268 | 112 | 383 | 1.2e-117 | 424.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56719.t1 | G7I294 | 98.1 | 268 | 5 | 0 | 1 | 268 | 110 | 377 | 2.8e-144 | 520.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050464 | MS.gene56719 | 0.813496 | 2.48E-51 | -1.69E-46 |
| MS.gene050529 | MS.gene56719 | 0.814698 | 1.35E-51 | -1.69E-46 |
| MS.gene051171 | MS.gene56719 | 0.807259 | 5.52E-50 | -1.69E-46 |
| MS.gene051582 | MS.gene56719 | 0.825076 | 5.71E-54 | -1.69E-46 |
| MS.gene053330 | MS.gene56719 | 0.824837 | 6.50E-54 | -1.69E-46 |
| MS.gene053907 | MS.gene56719 | 0.804457 | 2.14E-49 | -1.69E-46 |
| MS.gene053971 | MS.gene56719 | 0.84487 | 5.78E-59 | -1.69E-46 |
| MS.gene055370 | MS.gene56719 | 0.84596 | 2.93E-59 | -1.69E-46 |
| MS.gene056633 | MS.gene56719 | 0.828289 | 9.77E-55 | -1.69E-46 |
| MS.gene056899 | MS.gene56719 | -0.807368 | 5.23E-50 | -1.69E-46 |
| MS.gene058276 | MS.gene56719 | 0.851483 | 8.62E-61 | -1.69E-46 |
| MS.gene058746 | MS.gene56719 | 0.833998 | 3.86E-56 | -1.69E-46 |
| MS.gene059492 | MS.gene56719 | 0.814093 | 1.84E-51 | -1.69E-46 |
| MS.gene059494 | MS.gene56719 | 0.869658 | 2.63E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56719.t1 | MTR_1g007490 | 98.134 | 268 | 5 | 0 | 1 | 268 | 110 | 377 | 0.0 | 541 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56719.t1 | AT5G48470 | 80.147 | 272 | 50 | 1 | 1 | 268 | 112 | 383 | 2.46e-157 | 443 |
Find 76 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGAACTTCTTAACTAAAT+TGG | 0.216407 | 1.3:-11999029 | MS.gene56719:CDS |
| GCTGGTGGCGGTTTATTTAA+AGG | 0.239511 | 1.3:-11999805 | MS.gene56719:CDS |
| TTGGCTGCACAAGGAGTTAT+TGG | 0.297509 | 1.3:-12000364 | MS.gene56719:CDS |
| CCAGGCTGATGATTTATTAG+AGG | 0.340782 | 1.3:-11999728 | MS.gene56719:intron |
| TGGTATCACTGCACAACATC+TGG | 0.381522 | 1.3:-11998422 | MS.gene56719:CDS |
| GTTTCTCGAAACAGTCTCTA+AGG | 0.386239 | 1.3:-11998733 | MS.gene56719:intron |
| AGGGTTTCAGTAGGATTTGC+TGG | 0.394147 | 1.3:-11998908 | MS.gene56719:CDS |
| TCTATGTAGAACTCCCAAAA+AGG | 0.407720 | 1.3:-11999860 | MS.gene56719:CDS |
| ATCAAGGGCCATCATGAAAT+CGG | 0.426634 | 1.3:+12000318 | None:intergenic |
| CGCCGAGTTGCAGCTGGTGG+CGG | 0.436206 | 1.3:-11999817 | MS.gene56719:CDS |
| TCAGCTGGAAGATATGGATA+TGG | 0.438086 | 1.3:-12000416 | None:intergenic |
| GTCTTGTCTGGTATATATGC+TGG | 0.441648 | 1.3:-11998454 | MS.gene56719:CDS |
| AGAAGAAGCCCGTGATATGA+TGG | 0.446513 | 1.3:-11999282 | MS.gene56719:CDS |
| ATGCCCGGGCGTACGGGATG+TGG | 0.451249 | 1.3:+11998756 | None:intergenic |
| AAATTGGTGGCCTTAAAACC+TGG | 0.455899 | 1.3:-11999013 | MS.gene56719:CDS |
| GAGAAACATGCCCGGGCGTA+CGG | 0.457983 | 1.3:+11998749 | None:intergenic |
| GATATCCAGGCAAGTGTGAC+AGG | 0.482176 | 1.3:-11998786 | MS.gene56719:intron |
| CAAGGTCGATCATGTAATCA+AGG | 0.486722 | 1.3:+12000302 | None:intergenic |
| CACTGCACAACATCTGGAAT+GGG | 0.487263 | 1.3:-11998416 | None:intergenic |
| AAGAAGTTCCTTACCTGGGG+TGG | 0.495817 | 1.3:+11999983 | None:intergenic |
| ATATCCAGCACAACTTTCCC+AGG | 0.498084 | 1.3:+11998995 | None:intergenic |
| GAAGCCACATCCCGTACGCC+CGG | 0.501358 | 1.3:-11998760 | MS.gene56719:CDS |
| CATGATCGACCTTGCTGAGA+AGG | 0.506824 | 1.3:-12000293 | MS.gene56719:CDS |
| AGAAACATGCCCGGGCGTAC+GGG | 0.507961 | 1.3:+11998750 | None:intergenic |
| CAGATCGAAAACTGCTTGCA+AGG | 0.510311 | 1.3:-11999319 | MS.gene56719:CDS |
| GAATTTACACCTTATCATCC+TGG | 0.511032 | 1.3:+12000269 | None:intergenic |
| TGTCATTTAGATTTGCCCCT+GGG | 0.513084 | 1.3:+11999758 | None:intergenic |
| GATGCAGCGCAAGTCACTGT+TGG | 0.515901 | 1.3:-12000050 | MS.gene56719:intron |
| TGAGAAGGACCAGGATGATA+AGG | 0.516393 | 1.3:-12000278 | MS.gene56719:intron |
| TCACTGCACAACATCTGGAA+TGG | 0.520829 | 1.3:-11998417 | MS.gene56719:CDS |
| AAAACCTGGGAAAGTTGTGC+TGG | 0.524406 | 1.3:-11998999 | MS.gene56719:CDS |
| TTTCAGTAGGATTTGCTGGA+AGG | 0.527571 | 1.3:-11998904 | MS.gene56719:CDS |
| TGAGAAAGTAGCAGTGGAGT+TGG | 0.529397 | 1.3:-12000383 | MS.gene56719:CDS |
| TTCAGTAGGATTTGCTGGAA+GGG | 0.534641 | 1.3:-11998903 | MS.gene56719:intron |
| ATATACTCTACCTCCGGCTG+AGG | 0.542581 | 1.3:-11999222 | MS.gene56719:intron |
| CTGGCAACGATGATGATGAC+AGG | 0.544853 | 1.3:-11998928 | MS.gene56719:CDS |
| GCCCGTGATATGATGGGAGG+GGG | 0.546168 | 1.3:-11999275 | MS.gene56719:CDS |
| TCACATCAACATACCTCAGC+CGG | 0.548413 | 1.3:+11999209 | None:intergenic |
| TTGTTACGCCGAGTTGCAGC+TGG | 0.549323 | 1.3:-11999823 | MS.gene56719:CDS |
| GAACTTCTTAACTAAATTGG+TGG | 0.554110 | 1.3:-11999026 | MS.gene56719:CDS |
| GACTTGAAGATTCATATCCC+AGG | 0.555335 | 1.3:-11999775 | MS.gene56719:CDS |
| CGACCTTGCTGAGAAGGACC+AGG | 0.558031 | 1.3:-12000287 | MS.gene56719:CDS |
| ATGATAAGAAATGTGATGCT+CGG | 0.559415 | 1.3:-11998974 | MS.gene56719:CDS |
| TCTAAATGACATAGCTAACC+AGG | 0.561777 | 1.3:-11999746 | MS.gene56719:CDS |
| AGAAGTTCCTTACCTGGGGT+GGG | 0.562953 | 1.3:+11999984 | None:intergenic |
| TGGATTATATACTCTACCTC+CGG | 0.568191 | 1.3:-11999228 | MS.gene56719:CDS |
| ATGTCATTTAGATTTGCCCC+TGG | 0.570026 | 1.3:+11999757 | None:intergenic |
| AGCCCGTGATATGATGGGAG+GGG | 0.571772 | 1.3:-11999276 | MS.gene56719:CDS |
| GAAGAAGCCCGTGATATGAT+GGG | 0.572557 | 1.3:-11999281 | MS.gene56719:CDS |
| AACCGCCACCAGCTGCAACT+CGG | 0.572890 | 1.3:+11999815 | None:intergenic |
| CTGTTTCGAGAAACATGCCC+GGG | 0.576547 | 1.3:+11998742 | None:intergenic |
| TGGTAAGAGAGTTGATCAGA+TGG | 0.580714 | 1.3:-12000344 | MS.gene56719:CDS |
| CCTCTAATAAATCATCAGCC+TGG | 0.582816 | 1.3:+11999728 | None:intergenic |
| AGAATCTGAGAAAGTAGCAG+TGG | 0.584761 | 1.3:-12000389 | MS.gene56719:CDS |
| GCAGTGGAGTTGGCTGCACA+AGG | 0.598277 | 1.3:-12000373 | MS.gene56719:CDS |
| GATGATGACAGGGTTTCAGT+AGG | 0.598496 | 1.3:-11998917 | MS.gene56719:CDS |
| TCCAGGCAAGTGTGACAGGA+CGG | 0.598526 | 1.3:-11998782 | MS.gene56719:intron |
| ACTTGAAGATTCATATCCCA+GGG | 0.598867 | 1.3:-11999774 | MS.gene56719:CDS |
| GATGGAATCCGATTTCATGA+TGG | 0.600511 | 1.3:-12000326 | MS.gene56719:CDS |
| AATTGGTGGCCTTAAAACCT+GGG | 0.600896 | 1.3:-11999012 | MS.gene56719:CDS |
| AAGCCACATCCCGTACGCCC+GGG | 0.603062 | 1.3:-11998759 | MS.gene56719:CDS |
| TTACGCCGAGTTGCAGCTGG+TGG | 0.603081 | 1.3:-11999820 | MS.gene56719:CDS |
| ACTGTTTCGAGAAACATGCC+CGG | 0.605216 | 1.3:+11998741 | None:intergenic |
| AAGCCCGTGATATGATGGGA+GGG | 0.613927 | 1.3:-11999277 | MS.gene56719:CDS |
| CATCCTGGTCCTTCTCAGCA+AGG | 0.614327 | 1.3:+12000284 | None:intergenic |
| GTGATGCTCGGAAAAGATGA+AGG | 0.623308 | 1.3:-11998962 | MS.gene56719:CDS |
| AAGGTCGATCATGTAATCAA+GGG | 0.636967 | 1.3:+12000303 | None:intergenic |
| TTGGATGAAAGAAATGACCG+TGG | 0.639445 | 1.3:-11999248 | MS.gene56719:CDS |
| GAGGTAGAGTATATAATCCA+CGG | 0.643703 | 1.3:+11999231 | None:intergenic |
| GATGAAGGTGCAGACAACAC+TGG | 0.647546 | 1.3:-11998947 | MS.gene56719:CDS |
| CCCGTGATATGATGGGAGGG+GGG | 0.648810 | 1.3:-11999274 | MS.gene56719:CDS |
| GAAGCCCGTGATATGATGGG+AGG | 0.651249 | 1.3:-11999278 | MS.gene56719:CDS |
| TGGCAACGATGATGATGACA+GGG | 0.681533 | 1.3:-11998927 | MS.gene56719:CDS |
| CATCAACATACCTCAGCCGG+AGG | 0.697012 | 1.3:+11999212 | None:intergenic |
| ATATATGCTGGATCTGACAA+TGG | 0.706008 | 1.3:-11998442 | MS.gene56719:CDS |
| CTTGAAGATTCATATCCCAG+GGG | 0.774008 | 1.3:-11999773 | MS.gene56719:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCTATTACAATCTACATT+TGG | - | chr1.3:11998652-11998671 | MS.gene56719:intron | 20.0% |
| !! | AGATTGTAATAGATTATAGT+TGG | + | chr1.3:11998647-11998666 | None:intergenic | 20.0% |
| !! | ATATTTATCACTCAATTGAA+AGG | + | chr1.3:11999387-11999406 | None:intergenic | 20.0% |
| !! | CCATATAATTGTAAAATACT+TGG | - | chr1.3:12000171-12000190 | MS.gene56719:intron | 20.0% |
| !! | GTTATCAAAATAAAACAGTT+TGG | + | chr1.3:12000227-12000246 | None:intergenic | 20.0% |
| !!! | AAAAATAGAAAAGTATCAAC+TGG | + | chr1.3:12000341-12000360 | None:intergenic | 20.0% |
| !!! | CCAAGTATTTTACAATTATA+TGG | + | chr1.3:12000174-12000193 | None:intergenic | 20.0% |
| !!! | TGTGTAGATTTAAAACTAAA+TGG | - | chr1.3:11999714-11999733 | MS.gene56719:intron | 20.0% |
| ! | ACCATTCATCATAAAAACTA+TGG | + | chr1.3:12000123-12000142 | None:intergenic | 25.0% |
| ! | AGTTGAAAATTTCACTCTAT+TGG | - | chr1.3:12000197-12000216 | MS.gene56719:intron | 25.0% |
| ! | ATATATCAAGAACTGAGTAT+GGG | + | chr1.3:12000255-12000274 | None:intergenic | 25.0% |
| ! | GATTAATTGTTTACAGACAA+TGG | - | chr1.3:11999460-11999479 | MS.gene56719:intron | 25.0% |
| ! | GTTGAAAATTTCACTCTATT+GGG | - | chr1.3:12000198-12000217 | MS.gene56719:intron | 25.0% |
| ! | TACAATTATATGGAATTCTC+AGG | + | chr1.3:12000164-12000183 | None:intergenic | 25.0% |
| ! | TATATATCAAGAACTGAGTA+TGG | + | chr1.3:12000256-12000275 | None:intergenic | 25.0% |
| ! | TGTATGATAGAGTAATAATC+AGG | + | chr1.3:12000280-12000299 | None:intergenic | 25.0% |
| ! | TTAAACAACTGTATGAATGA+AGG | + | chr1.3:11999157-11999176 | None:intergenic | 25.0% |
| ! | TTGAAAATTTCACTCTATTG+GGG | - | chr1.3:12000199-12000218 | MS.gene56719:intron | 25.0% |
| !!! | ATCTTTTAGGTTCAAGTAAT+TGG | - | chr1.3:11998934-11998953 | MS.gene56719:CDS | 25.0% |
| !!! | ATTTTGTCGTTTGTGTTAAA+AGG | - | chr1.3:11999669-11999688 | MS.gene56719:intron | 25.0% |
| !!! | TTTTGTCGTTTGTGTTAAAA+GGG | - | chr1.3:11999670-11999689 | MS.gene56719:intron | 25.0% |
| AAGGATAGAAAAAGTTAACC+AGG | + | chr1.3:11999368-11999387 | None:intergenic | 30.0% | |
| ACTTGAACCTAAAAGATGAA+GGG | + | chr1.3:11998931-11998950 | None:intergenic | 30.0% | |
| ATCGAAATATATGCACAGTT+AGG | + | chr1.3:11998753-11998772 | None:intergenic | 30.0% | |
| ATGATAAGAAATGTGATGCT+CGG | - | chr1.3:11999846-11999865 | MS.gene56719:CDS | 30.0% | |
| ATTATTAAGCTTGGTCTGTT+AGG | + | chr1.3:11998707-11998726 | None:intergenic | 30.0% | |
| GAACTTCTTAACTAAATTGG+TGG | - | chr1.3:11999794-11999813 | MS.gene56719:CDS | 30.0% | |
| GGTGAACTTCTTAACTAAAT+TGG | - | chr1.3:11999791-11999810 | MS.gene56719:CDS | 30.0% | |
| GTCGCAAAAAAATATGCTTT+CGG | - | chr1.3:11999743-11999762 | MS.gene56719:CDS | 30.0% | |
| TACTTGAACCTAAAAGATGA+AGG | + | chr1.3:11998932-11998951 | None:intergenic | 30.0% | |
| TGGTATACAACATTACAACT+TGG | + | chr1.3:11998896-11998915 | None:intergenic | 30.0% | |
| TTATTAAGCTTGGTCTGTTA+GGG | + | chr1.3:11998706-11998725 | None:intergenic | 30.0% | |
| ! | AACAGTGTTTAAAATTCACG+TGG | + | chr1.3:11999439-11999458 | None:intergenic | 30.0% |
| ! | GCCATAGTTTTTATGATGAA+TGG | - | chr1.3:12000119-12000138 | MS.gene56719:intron | 30.0% |
| ! | TCATATCTGCTTTCCTTTTT+GGG | + | chr1.3:11998976-11998995 | None:intergenic | 30.0% |
| ! | TTCATATCTGCTTTCCTTTT+TGG | + | chr1.3:11998977-11998996 | None:intergenic | 30.0% |
| !!! | GATACTTTTCTATTTTTGCC+AGG | - | chr1.3:12000344-12000363 | MS.gene56719:CDS | 30.0% |
| AAGGTCGATCATGTAATCAA+GGG | + | chr1.3:11998520-11998539 | None:intergenic | 35.0% | |
| ACTTCTATCAAGTTCTGTAG+AGG | - | chr1.3:11999200-11999219 | MS.gene56719:intron | 35.0% | |
| ACTTGAAGATTCATATCCCA+GGG | - | chr1.3:11999046-11999065 | MS.gene56719:intron | 35.0% | |
| ATATATGCTGGATCTGACAA+TGG | - | chr1.3:12000378-12000397 | MS.gene56719:CDS | 35.0% | |
| CTATATCTGAATTCTTGCCA+AGG | - | chr1.3:11999410-11999429 | MS.gene56719:intron | 35.0% | |
| CTTAAAGAAGTTCCTTACCT+GGG | + | chr1.3:11998844-11998863 | None:intergenic | 35.0% | |
| GAATTTACACCTTATCATCC+TGG | + | chr1.3:11998554-11998573 | None:intergenic | 35.0% | |
| GAGGTAGAGTATATAATCCA+CGG | + | chr1.3:11999592-11999611 | None:intergenic | 35.0% | |
| TAAAATTCACGTGGTTTCCT+TGG | + | chr1.3:11999430-11999449 | None:intergenic | 35.0% | |
| TAGAGGTTCTCAATATTGGA+GGG | - | chr1.3:11999217-11999236 | MS.gene56719:intron | 35.0% | |
| TCGTTTGTGTTAAAAGGGAT+TGG | - | chr1.3:11999675-11999694 | MS.gene56719:intron | 35.0% | |
| TCTAAATGACATAGCTAACC+AGG | - | chr1.3:11999074-11999093 | MS.gene56719:intron | 35.0% | |
| TCTATGTAGAACTCCCAAAA+AGG | - | chr1.3:11998960-11998979 | MS.gene56719:CDS | 35.0% | |
| TCTGTAGAGGTTCTCAATAT+TGG | - | chr1.3:11999213-11999232 | MS.gene56719:intron | 35.0% | |
| TGAGTTGCGATTATTAAGCT+TGG | + | chr1.3:11998716-11998735 | None:intergenic | 35.0% | |
| TGGATTATATACTCTACCTC+CGG | - | chr1.3:11999592-11999611 | MS.gene56719:intron | 35.0% | |
| TTAAAGAAGTTCCTTACCTG+GGG | + | chr1.3:11998843-11998862 | None:intergenic | 35.0% | |
| TTCGGCATCATTAAAACTGT+TGG | - | chr1.3:11999761-11999780 | MS.gene56719:CDS | 35.0% | |
| !! | TCAGAAAAGTGTTTGAGAAG+TGG | + | chr1.3:11998867-11998886 | None:intergenic | 35.0% |
| ACACTCCATTCCATTTGGAA+AGG | - | chr1.3:11998618-11998637 | MS.gene56719:intron | 40.0% | |
| ACTTGTCTGTCATGATATCC+AGG | - | chr1.3:12000021-12000040 | MS.gene56719:CDS | 40.0% | |
| AGAATCTGAGAAAGTAGCAG+TGG | - | chr1.3:11998431-11998450 | MS.gene56719:CDS | 40.0% | |
| ATCAAGGGCCATCATGAAAT+CGG | + | chr1.3:11998505-11998524 | None:intergenic | 40.0% | |
| ATTAAAACTGTTGGCAGTGC+AGG | - | chr1.3:11999770-11999789 | MS.gene56719:CDS | 40.0% | |
| CAAGGTCGATCATGTAATCA+AGG | + | chr1.3:11998521-11998540 | None:intergenic | 40.0% | |
| CATATATACCAGACAAGACC+TGG | + | chr1.3:12000365-12000384 | None:intergenic | 40.0% | |
| CCAGGCTGATGATTTATTAG+AGG | - | chr1.3:11999092-11999111 | MS.gene56719:intron | 40.0% | |
| CCTCTAATAAATCATCAGCC+TGG | + | chr1.3:11999095-11999114 | None:intergenic | 40.0% | |
| CTTGAAGATTCATATCCCAG+GGG | - | chr1.3:11999047-11999066 | MS.gene56719:intron | 40.0% | |
| GACTTGAAGATTCATATCCC+AGG | - | chr1.3:11999045-11999064 | MS.gene56719:intron | 40.0% | |
| GATATTGCACTTGAAAGACG+CGG | + | chr1.3:11999305-11999324 | None:intergenic | 40.0% | |
| GATGGAATCCGATTTCATGA+TGG | - | chr1.3:11998494-11998513 | MS.gene56719:intron | 40.0% | |
| GCTTAAAGAAGTTCCTTACC+TGG | + | chr1.3:11998845-11998864 | None:intergenic | 40.0% | |
| GTAGAGGTTCTCAATATTGG+AGG | - | chr1.3:11999216-11999235 | MS.gene56719:intron | 40.0% | |
| GTCTTGTCTGGTATATATGC+TGG | - | chr1.3:12000366-12000385 | MS.gene56719:CDS | 40.0% | |
| GTTTCTCGAAACAGTCTCTA+AGG | - | chr1.3:12000087-12000106 | MS.gene56719:intron | 40.0% | |
| TAGTTGGAGACCTTTCCAAA+TGG | + | chr1.3:11998631-11998650 | None:intergenic | 40.0% | |
| TGAACCTAAAAGATGAAGGG+AGG | + | chr1.3:11998928-11998947 | None:intergenic | 40.0% | |
| TTGGATGAAAGAAATGACCG+TGG | - | chr1.3:11999572-11999591 | MS.gene56719:intron | 40.0% | |
| TTTCCAAATGGAATGGAGTG+TGG | + | chr1.3:11998619-11998638 | None:intergenic | 40.0% | |
| ! | AAATTGGTGGCCTTAAAACC+TGG | - | chr1.3:11999807-11999826 | MS.gene56719:CDS | 40.0% |
| ! | AACTCCTCCCTTCATCTTTT+AGG | - | chr1.3:11998921-11998940 | MS.gene56719:CDS | 40.0% |
| ! | AATTGGTGGCCTTAAAACCT+GGG | - | chr1.3:11999808-11999827 | MS.gene56719:CDS | 40.0% |
| ! | ATGTCATTTAGATTTGCCCC+TGG | + | chr1.3:11999066-11999085 | None:intergenic | 40.0% |
| ! | CACAACTTTCCCAGGTTTTA+AGG | + | chr1.3:11999820-11999839 | None:intergenic | 40.0% |
| ! | TGGTAAGAGAGTTGATCAGA+TGG | - | chr1.3:11998476-11998495 | MS.gene56719:intron | 40.0% |
| ! | TGTCATTTAGATTTGCCCCT+GGG | + | chr1.3:11999065-11999084 | None:intergenic | 40.0% |
| !! | CAGAAGCTTTCTAAAATGCC+TGG | - | chr1.3:11999347-11999366 | MS.gene56719:CDS | 40.0% |
| !! | CAGGCATTTTAGAAAGCTTC+TGG | + | chr1.3:11999349-11999368 | None:intergenic | 40.0% |
| !! | TATTTTTGCCAGGTCTTGTC+TGG | - | chr1.3:12000354-12000373 | MS.gene56719:CDS | 40.0% |
| !! | TTCAGTAGGATTTGCTGGAA+GGG | - | chr1.3:11999917-11999936 | MS.gene56719:intron | 40.0% |
| !! | TTTCAGTAGGATTTGCTGGA+AGG | - | chr1.3:11999916-11999935 | MS.gene56719:intron | 40.0% |
| AAAACCTGGGAAAGTTGTGC+TGG | - | chr1.3:11999821-11999840 | MS.gene56719:CDS | 45.0% | |
| AACTAAAAAATGCCCACCCC+AGG | - | chr1.3:11998824-11998843 | MS.gene56719:intron | 45.0% | |
| ACTGTTTCGAGAAACATGCC+CGG | + | chr1.3:12000082-12000101 | None:intergenic | 45.0% | |
| AGAAGAAGCCCGTGATATGA+TGG | - | chr1.3:11999538-11999557 | MS.gene56719:intron | 45.0% | |
| AGGGTTTCAGTAGGATTTGC+TGG | - | chr1.3:11999912-11999931 | MS.gene56719:intron | 45.0% | |
| ATATCCAGCACAACTTTCCC+AGG | + | chr1.3:11999828-11999847 | None:intergenic | 45.0% | |
| ATGAAGGGAGGAGTTCACAT+TGG | + | chr1.3:11998916-11998935 | None:intergenic | 45.0% | |
| CAGATCGAAAACTGCTTGCA+AGG | - | chr1.3:11999501-11999520 | MS.gene56719:intron | 45.0% | |
| CATCCACACTCCATTCCATT+TGG | - | chr1.3:11998613-11998632 | MS.gene56719:intron | 45.0% | |
| GAAGAAGCCCGTGATATGAT+GGG | - | chr1.3:11999539-11999558 | MS.gene56719:intron | 45.0% | |
| GATGATGACAGGGTTTCAGT+AGG | - | chr1.3:11999903-11999922 | MS.gene56719:intron | 45.0% | |
| GGAGACCTTTCCAAATGGAA+TGG | + | chr1.3:11998626-11998645 | None:intergenic | 45.0% | |
| GTGATGCTCGGAAAAGATGA+AGG | - | chr1.3:11999858-11999877 | MS.gene56719:CDS | 45.0% | |
| TCACATCAACATACCTCAGC+CGG | + | chr1.3:11999614-11999633 | None:intergenic | 45.0% | |
| TCACTGCACAACATCTGGAA+TGG | - | chr1.3:12000403-12000422 | MS.gene56719:CDS | 45.0% | |
| TGAGAAAGTAGCAGTGGAGT+TGG | - | chr1.3:11998437-11998456 | MS.gene56719:CDS | 45.0% | |
| TGAGAAGGACCAGGATGATA+AGG | - | chr1.3:11998542-11998561 | MS.gene56719:intron | 45.0% | |
| TGGTATCACTGCACAACATC+TGG | - | chr1.3:12000398-12000417 | MS.gene56719:CDS | 45.0% | |
| TTGGCTGCACAAGGAGTTAT+TGG | - | chr1.3:11998456-11998475 | MS.gene56719:CDS | 45.0% | |
| ! | AGTTTTCGATCTGGCACAAC+AGG | + | chr1.3:11999494-11999513 | None:intergenic | 45.0% |
| ! | CTTGCAAGCAGTTTTCGATC+TGG | + | chr1.3:11999503-11999522 | None:intergenic | 45.0% |
| ! | TCAACTGGAAGTGCAAACAC+AGG | + | chr1.3:12000326-12000345 | None:intergenic | 45.0% |
| ! | TGGCAACGATGATGATGACA+GGG | - | chr1.3:11999893-11999912 | MS.gene56719:intron | 45.0% |
| !! | GCTGGTGGCGGTTTATTTAA+AGG | - | chr1.3:11999015-11999034 | MS.gene56719:CDS | 45.0% |
| AAAAATGCCCACCCCAGGTA+AGG | - | chr1.3:11998829-11998848 | MS.gene56719:intron | 50.0% | |
| AAGAAGTTCCTTACCTGGGG+TGG | + | chr1.3:11998840-11998859 | None:intergenic | 50.0% | |
| AGAAGTTCCTTACCTGGGGT+GGG | + | chr1.3:11998839-11998858 | None:intergenic | 50.0% | |
| AGTGCAAACACAGGCAGAGA+AGG | + | chr1.3:12000317-12000336 | None:intergenic | 50.0% | |
| ATATACTCTACCTCCGGCTG+AGG | - | chr1.3:11999598-11999617 | MS.gene56719:intron | 50.0% | |
| ATCGCAACTCACACACATGC+TGG | - | chr1.3:11998725-11998744 | MS.gene56719:intron | 50.0% | |
| CATGATCGACCTTGCTGAGA+AGG | - | chr1.3:11998527-11998546 | MS.gene56719:intron | 50.0% | |
| CTGTTTCGAGAAACATGCCC+GGG | + | chr1.3:12000081-12000100 | None:intergenic | 50.0% | |
| GATATCCAGGCAAGTGTGAC+AGG | - | chr1.3:12000034-12000053 | MS.gene56719:CDS | 50.0% | |
| GTGAGTCGAATTGGATGACG+TGG | - | chr1.3:11999939-11999958 | MS.gene56719:intron | 50.0% | |
| TCGCAACTCACACACATGCT+GGG | - | chr1.3:11998726-11998745 | MS.gene56719:intron | 50.0% | |
| ! | AAGCCCGTGATATGATGGGA+GGG | - | chr1.3:11999543-11999562 | MS.gene56719:intron | 50.0% |
| ! | CTGGCAACGATGATGATGAC+AGG | - | chr1.3:11999892-11999911 | MS.gene56719:intron | 50.0% |
| ! | GATGAAGGTGCAGACAACAC+TGG | - | chr1.3:11999873-11999892 | MS.gene56719:CDS | 50.0% |
| !! | TATGATGGGAGGGGGGATTT+TGG | - | chr1.3:11999553-11999572 | MS.gene56719:intron | 50.0% |
| CATCAACATACCTCAGCCGG+AGG | + | chr1.3:11999611-11999630 | None:intergenic | 55.0% | |
| CATCCTGGTCCTTCTCAGCA+AGG | + | chr1.3:11998539-11998558 | None:intergenic | 55.0% | |
| GATGCAGCGCAAGTCACTGT+TGG | - | chr1.3:11998770-11998789 | MS.gene56719:CDS | 55.0% | |
| GCTGGAAGGGTGAGTCGAAT+TGG | - | chr1.3:11999930-11999949 | MS.gene56719:intron | 55.0% | |
| TCCAGGCAAGTGTGACAGGA+CGG | - | chr1.3:12000038-12000057 | MS.gene56719:CDS | 55.0% | |
| TCCCCCCTCCCATCATATCA+CGG | + | chr1.3:11999550-11999569 | None:intergenic | 55.0% | |
| TTGTTACGCCGAGTTGCAGC+TGG | - | chr1.3:11998997-11999016 | MS.gene56719:CDS | 55.0% | |
| ! | AGCCCGTGATATGATGGGAG+GGG | - | chr1.3:11999544-11999563 | MS.gene56719:intron | 55.0% |
| ! | GAAGCCCGTGATATGATGGG+AGG | - | chr1.3:11999542-11999561 | MS.gene56719:intron | 55.0% |
| AACCGCCACCAGCTGCAACT+CGG | + | chr1.3:11999008-11999027 | None:intergenic | 60.0% | |
| AGAAACATGCCCGGGCGTAC+GGG | + | chr1.3:12000073-12000092 | None:intergenic | 60.0% | |
| CCCCCCTCCCATCATATCAC+GGG | + | chr1.3:11999549-11999568 | None:intergenic | 60.0% | |
| CGACCTTGCTGAGAAGGACC+AGG | - | chr1.3:11998533-11998552 | MS.gene56719:intron | 60.0% | |
| GAGAAACATGCCCGGGCGTA+CGG | + | chr1.3:12000074-12000093 | None:intergenic | 60.0% | |
| GCAGTGGAGTTGGCTGCACA+AGG | - | chr1.3:11998447-11998466 | MS.gene56719:CDS | 60.0% | |
| TCCGTCCTGTCACACTTGCC+TGG | + | chr1.3:12000042-12000061 | None:intergenic | 60.0% | |
| TTACGCCGAGTTGCAGCTGG+TGG | - | chr1.3:11999000-11999019 | MS.gene56719:CDS | 60.0% | |
| ! | CCCGTGATATGATGGGAGGG+GGG | - | chr1.3:11999546-11999565 | MS.gene56719:intron | 60.0% |
| ! | GCCCGTGATATGATGGGAGG+GGG | - | chr1.3:11999545-11999564 | MS.gene56719:intron | 60.0% |
| AAGCCACATCCCGTACGCCC+GGG | - | chr1.3:12000061-12000080 | MS.gene56719:intron | 65.0% | |
| GAAGCCACATCCCGTACGCC+CGG | - | chr1.3:12000060-12000079 | MS.gene56719:intron | 65.0% | |
| ATGCCCGGGCGTACGGGATG+TGG | + | chr1.3:12000067-12000086 | None:intergenic | 70.0% | |
| CGCCGAGTTGCAGCTGGTGG+CGG | - | chr1.3:11999003-11999022 | MS.gene56719:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 11998417 | 12000425 | 11998417 | ID=MS.gene56719 |
| chr1.3 | mRNA | 11998417 | 12000425 | 11998417 | ID=MS.gene56719.t1;Parent=MS.gene56719 |
| chr1.3 | exon | 12000279 | 12000425 | 12000279 | ID=MS.gene56719.t1.exon1;Parent=MS.gene56719.t1 |
| chr1.3 | CDS | 12000279 | 12000425 | 12000279 | ID=cds.MS.gene56719.t1;Parent=MS.gene56719.t1 |
| chr1.3 | exon | 11999997 | 12000065 | 11999997 | ID=MS.gene56719.t1.exon2;Parent=MS.gene56719.t1 |
| chr1.3 | CDS | 11999997 | 12000065 | 11999997 | ID=cds.MS.gene56719.t1;Parent=MS.gene56719.t1 |
| chr1.3 | exon | 11999729 | 11999899 | 11999729 | ID=MS.gene56719.t1.exon3;Parent=MS.gene56719.t1 |
| chr1.3 | CDS | 11999729 | 11999899 | 11999729 | ID=cds.MS.gene56719.t1;Parent=MS.gene56719.t1 |
| chr1.3 | exon | 11999223 | 11999366 | 11999223 | ID=MS.gene56719.t1.exon4;Parent=MS.gene56719.t1 |
| chr1.3 | CDS | 11999223 | 11999366 | 11999223 | ID=cds.MS.gene56719.t1;Parent=MS.gene56719.t1 |
| chr1.3 | exon | 11998904 | 11999050 | 11998904 | ID=MS.gene56719.t1.exon5;Parent=MS.gene56719.t1 |
| chr1.3 | CDS | 11998904 | 11999050 | 11998904 | ID=cds.MS.gene56719.t1;Parent=MS.gene56719.t1 |
| chr1.3 | exon | 11998734 | 11998799 | 11998734 | ID=MS.gene56719.t1.exon6;Parent=MS.gene56719.t1 |
| chr1.3 | CDS | 11998734 | 11998799 | 11998734 | ID=cds.MS.gene56719.t1;Parent=MS.gene56719.t1 |
| chr1.3 | exon | 11998417 | 11998476 | 11998417 | ID=MS.gene56719.t1.exon7;Parent=MS.gene56719.t1 |
| chr1.3 | CDS | 11998417 | 11998476 | 11998417 | ID=cds.MS.gene56719.t1;Parent=MS.gene56719.t1 |
| Gene Sequence |
| Protein sequence |
