AlfalfaGEDB | MS.gene059547

M. sativa cultivar XinJiangDaYe / MS.gene059547

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF00560.36 PF12799.10 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059547.t1	XP_013453185.1	91.7	424	35	0	522	945	592	1015	4.10E-201	711.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059547.t1	Q9FII5	40.8	343	176	9	595	926	691	1017	1.1e-64	250.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059547.t1	A0A072UDM0	91.7	424	35	0	522	945	592	1015	3.0e-201	711.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049573	MS.gene059547	0.814653	1.38E-51	-1.69E-46
MS.gene051946	MS.gene059547	0.801069	1.07E-48	-1.69E-46
MS.gene059547	MS.gene064275	0.820918	5.32E-53	-1.69E-46
MS.gene059547	MS.gene07397	0.8117	6.14E-51	-1.69E-46
MS.gene059547	MS.gene20870	0.806268	8.93E-50	-1.69E-46
MS.gene059547	MS.gene44950	0.805218	1.48E-49	-1.69E-46
MS.gene059547	MS.gene47109	0.848229	7.00E-60	-1.69E-46
MS.gene059547	MS.gene52935	0.80427	2.34E-49	-1.69E-46
MS.gene059547	MS.gene52937	0.829294	5.58E-55	-1.69E-46
MS.gene059547	MS.gene55469	0.836851	7.34E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059547.t1	MTR_6g088785	95.021	944	47	0	2	945	72	1015	0.0	1807
MS.gene059547.t1	MTR_6g088785	28.980	245	143	5	308	522	66	309	2.16e-18	91.3
MS.gene059547.t1	MTR_6g088785	94.424	807	45	0	2	808	72	878	0.0	1526
MS.gene059547.t1	MTR_6g088785	28.980	245	143	5	308	522	66	309	4.18e-18	90.5
MS.gene059547.t1	MTR_6g068970	66.147	963	296	6	4	939	71	1030	0.0	1221
MS.gene059547.t1	MTR_6g068970	27.004	237	144	4	3	239	409	616	9.82e-14	76.3
MS.gene059547.t1	MTR_6g088755	66.237	930	298	8	4	929	63	980	0.0	1201
MS.gene059547.t1	MTR_6g088755	30.000	400	246	6	165	531	55	453	7.33e-38	154
MS.gene059547.t1	MTR_6g088755	27.602	221	152	4	332	544	55	275	1.23e-11	69.3
MS.gene059547.t1	MTR_6g088790	63.124	941	336	8	4	940	76	1009	0.0	1162

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059547.t1	AT5G25930	50.218	918	435	9	3	910	63	968	0.0	897
MS.gene059547.t1	AT5G25930	28.571	231	154	5	312	533	60	288	6.46e-15	80.1
MS.gene059547.t1	AT1G28440	37.998	929	528	15	4	910	61	963	0.0	601
MS.gene059547.t1	AT1G28440	33.518	361	232	6	169	522	57	416	3.44e-42	167
MS.gene059547.t1	AT1G28440	33.065	248	151	6	3	247	372	607	1.21e-21	102
MS.gene059547.t1	AT1G28440	34.722	144	90	2	385	524	60	203	2.04e-12	72.0
MS.gene059547.t1	AT1G28440	33.125	160	102	2	368	524	21	178	2.74e-11	68.2
MS.gene059547.t1	AT5G65710	38.396	935	521	15	4	906	75	986	0.0	579
MS.gene059547.t1	AT5G65710	29.124	388	244	5	169	525	71	458	2.07e-38	155
MS.gene059547.t1	AT5G65710	28.472	288	179	4	1	287	337	598	1.80e-22	104

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Find 151 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCGAAGTCTTGATAGA+TGG	0.510437	6.4:+61957365	MS.gene059547:CDS
AAATATGTTGGAAACATCCC+AGG	0.575164	6.4:-61955286	None:intergenic
AAATTGTAGTAGCTTGTTGG+AGG	0.592718	6.4:+61956268	MS.gene059547:CDS
AACTCTTCCTGTTAAACGAT+TGG	0.448986	6.4:-61956792	None:intergenic
AAGAGATTGCAAATAGCGAT+CGG	0.629643	6.4:+61957463	MS.gene059547:CDS
AAGATTGATGTATACAGCTT+TGG	0.469121	6.4:+61958813	MS.gene059547:CDS
AAGGATCGGATAACTCATCA+TGG	0.544101	6.4:+61957047	MS.gene059547:CDS
AATAATATTATAGGAAGTGG+TGG	0.526117	6.4:+61957133	MS.gene059547:CDS
AATGCAAAAGTTGCTGATTT+TGG	0.147432	6.4:+61957583	MS.gene059547:CDS
AATGGGAGAAATGGTTTCTT+TGG	0.215137	6.4:+61955669	MS.gene059547:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGATTGATGTATACAGCTT+TGG	+	chr6.4:61958813-61958832	MS.gene059547:CDS	30.0%
AATAAGCTGAAAACAGCTAA+TGG	-	chr6.4:61958563-61958582	None:intergenic	30.0%
ACCTTAAAATCTATCAGAGA+TGG	-	chr6.4:61955970-61955989	None:intergenic	30.0%
AGTCATTTGATTCATCTGAT+TGG	+	chr6.4:61958242-61958261	MS.gene059547:intron	30.0%
ATATGAAAGATGGTATGGTT+TGG	-	chr6.4:61955219-61955238	None:intergenic	30.0%
ATGTAGCTGTGAAAAAGATT+TGG	+	chr6.4:61957197-61957216	MS.gene059547:CDS	30.0%
CATTACTGACACTAAATTTG+AGG	+	chr6.4:61956633-61956652	MS.gene059547:CDS	30.0%
CTTTACCGTAAAAGAAAACA+AGG	+	chr6.4:61957028-61957047	MS.gene059547:CDS	30.0%
GATATTACATCAAATGGAAG+TGG	-	chr6.4:61956605-61956624	None:intergenic	30.0%
GATGATATTCCTTCAAGTAT+TGG	+	chr6.4:61955433-61955452	MS.gene059547:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.4	gene	61955169	61959196	61955169	ID=MS.gene059547
chr6.4	mRNA	61955169	61959196	61955169	ID=MS.gene059547.t1;Parent=MS.gene059547
chr6.4	exon	61955169	61956009	61955169	ID=MS.gene059547.t1.exon1;Parent=MS.gene059547.t1
chr6.4	CDS	61955169	61956009	61955169	ID=cds.MS.gene059547.t1;Parent=MS.gene059547.t1
chr6.4	exon	61956102	61957685	61956102	ID=MS.gene059547.t1.exon2;Parent=MS.gene059547.t1
chr6.4	CDS	61956102	61957685	61956102	ID=cds.MS.gene059547.t1;Parent=MS.gene059547.t1
chr6.4	exon	61958784	61959196	61958784	ID=MS.gene059547.t1.exon3;Parent=MS.gene059547.t1
chr6.4	CDS	61958784	61959196	61958784	ID=cds.MS.gene059547.t1;Parent=MS.gene059547.t1

Gene Sequence

>MS.gene059547

ATGAATGGTTCTGTCACAGGTTTGACTTTGGTCAACTATAACATAAACCAAACCATACCATCTTTCATATGTGACCTTAAAAATCTCACACATGTTGATTTCAACAACAATTACATACCTGGGATGTTTCCAACATATTTATACAATTGTTCAAAGTTAGAGTATCTTGATTTGTCAATGAACAATTTTGTTGGAAAGATTCCTGAAAATATTTTCACTTTGTCAAATTTGAATTATCTTAATCTTAGTTATACTAATTTTACTGATGATATTCCTTCAAGTATTGGAAAGTTGAAGAAACTGAGATTTCTTGCGTTGCAAGTTTGTCTATTTGATGGAACATTCCCGGATGAGATTGGAGATTTGGTGAACCTTGAAACGTTGGATTTGTCGAACAATTTGTTTAAGAGTTCTACGTTGCCATTGAGTTGGACCAAGTTGAGTAAATTGAAGGTGTTTTATATGTATGTCTGTAATCTTTTTGGTGAAATGCCTGAATCAATGGGAGAAATGGTTTCTTTGGAGGATTTGGATATTTCGCAAAATGGGTTGACTGGAAAAATTCCTAGTGGTTTGTTCATGTTGAAGAATCTTAGAAGAATGTTGCTTTCAAGGAACGATCTTTCTGGAGAGTTACCTGATGTGGTTGAAGCATTAAACTTGACTATCATCGATCTTGCACAGAATAATCTTACAGGAAAAATACCAGCTGATTTTGGAAAGCTGCAAAAGTTAACAGGGTTGTCTCTGCCGGTGAATAATTTTTCAGGAGAGATTCCGCAAAGCATAGGTCAACTTCCATCTCTGATAGATTTTAAGGTCTTTATGAACAACTTATCAGGTACGCTTGAATTTTTGCACGAGTTTTGGTTTCTCCGGATTTTTTTTTATCGGTATTAACAATACTATTTTCATGTAAAACACATTTGTCAGGTACACTTCCTCCTGATTTTGGACTTCACTCAAAGCTAAGAACTTTTCATATTACAACAAACAGATTTGAGGGAAGGTTGCCAAAGAATTTGTGCTATCATGGACAGTTACAAAATTTAACTGCTTATGAAAATCATCTAAGTGGTGAGTTACCAGAATCACTTGGAAATTGTAGTAGCTTGTTGGAGGTGAAAATTTACAGTAATGAGTTTTATGGTAAAATTCCTAGTGGACTTTGGAGAGCTGAAAATTTGGTGTATTTTATGATAAGTCATAATAAGTTCAATGGTGAGCTTCCTCAAAATTTGTCATCAAGTATTTCACTTTTGGATATAAGCTATAATCAATTTTATGGTGGAATTCCAATTGGAGTATCTTCTTGGACTAATGTGGTTGAGTTTATGGCAAGCAAGAATAATCTTAATGGAAGTATTCCACAAGAGATAACATCACTTCATAAGCTACAAACATTGTTGCTTGATCAGAATCAGCTAAAAGGGCCACTTCCATTTGATGTAATATCATGGAATTCATTACTGACACTAAATTTGAGGCAAAATCAACTGAGTGGAGAAATTCCAGCTTCAATCGGTTATTTACCTGATCTTAGTGTTCTTGATCTATCAGACAATCAATTCTCCGGCGAAATACCTTCTATAGCTCCAAGAATCACAGTTCTCGATCTATCATCCAATCGTTTAACAGGAAGAGTTCCTAGTGCATTTGAAAATTCGGCATTTGATAGAAGCTTTTTGAACAATTCTGGTTTATGTGCTGATACACCAACATTGAACCTTACCTTATGCAATTCTAATTCCAACACTCAAAGTGAAAGCAAAGATTCATCTTTATCTTCTACTTTGATTGTAATCTTGGTGGTAGTTTCCGTCTTAGCGGCTTCATTGATATTGTTCGTGATTATCAAACTTTACCGTAAAAGAAAACAAGGATCGGATAACTCATCATGGAAACTCACTTCATTTCAAAGACTGAATTTCACAGAATCAGACATAGTTTCTTCGATGACAGAAAATAATATTATAGGAAGTGGTGGATACGGTACAGTTTATAGAGTCACTATTGATGGATTAGGCTATGTAGCTGTGAAAAAGATTTGGGAAAACAGAAAACTAGACCAAAATCTTGAGAAATCATTTCACACCGAGGTTAAAATATTGAGCAGCATTCGGCATAGAAACATCGTGAAGTTGTTATGTTGTATCTCTAACGATGATACAATGCTACTTGTTTACGAGTATGTCGAAAACCGAAGTCTTGATAGATGGTTGCAGAAGAAGAAAACTGTTAGGTCTTCAACTTTGTTGTCAAGATCAGTTCATCATGTCGTTCTTGATTGGCCAAAGAGATTGCAAATAGCGATCGGTGTAGCGCAAGGTTTGAGCTATATGCATCATGAATGTTCACCACCTGTTGTTCATAGAGATGTGAAGACAAGTAACATTCTTTTGGATTCTCAGTTTAATGCAAAAGTTGCTGATTTTGGTTTGGCTAGGATGTTGATCAGTCCTGGGGAAGTTGCTACTATGTCAGCTGTGATTGGTTCTTTTGGCTATATGGCTCCAGGTGAATTTATTGACATGCTGATTTTTTGTTTTTCTTGCTTACAAATATGCTTCGTCGTTAACATTTTTCTCATGGTCATGTATATTTTGGATTTAATTCGTATACATAAAGATATTTTACCATGTCAATCAATCTTGCATTAAGGTTATACACATGCATTCCATTTACTGTCATACGCCAAAATGCATATACATAGCAGGCTGCCACACAAGAAACCGGAAACCTTCCAGCGCCTGCACAACAGATACACAGCAGAGGAACCAGAAAACTTGCTGCAATCTGCAGGCCGAAAAACCCCCCAGCTGATCCTCAACCTCTCGAATCCCTCTCCATACAATAACATGGATCCAAAACCATTCGTAAAAAAGGCACTTACTCGTATTTGATTTGATCTACTTCCATTTCCAAAACAACACCTTAATCTCCTCTACCACGTCTAAAATATCGGAATTCTTATTTTCAAAGATAAGGGCATTTCTCGTTTTCCAAAGAATCCACGTCAATCATTCATGACTGTCAATACTAAACATTTGACTTTAATCATAACAACTTTAAAAGTCATTTGATTCATCTGATTGGCTGTGATTTGTTGAGAGTATACAACTTTTTACACTGAAAGTGTATGCACATTAATCTCATCTATTTATTTTCTCACTATAAATTGATATTTTTTTTGGCTTTGATTCTGTTTAACATGAAATTATTATTGTTAGTCCTTGTAAAAAAAAAATTCCTAGTGAAATCTGAAATAGTTATCTTTTGCATGCTCTCTATCATTTACGGTCTGTCTAAATTGACTTATTTGAATTAATCTACTAGCATTAGCACTTGTGAGACCATTTGGGAGAGCTTATTAAAATAGCTTAGGACATGACCATTAGCTGTTTTCAGCTTATTTTCATAAACCTTTCAGGATCATTCATGGAAACAGTTTAACTTTATTTTATCTTTTGTTATAAAAATAGCTTATACATAAACACTTATATGACAAGAGCTTATGTAATAAGTACTAAATTTAAATTTAATCGTTTTCCTTTGTCACTTTTTTCATTGGCATAAGCTTAACTTGATTGTGTTTTTGACATGTTCGAATTGCAGAATATATTCAAACAACTAAAGTTAGTGAAAAGATTGATGTATACAGCTTTGGTGTAATCCTATTGGAACTCACAACCGGTAAAGAAGCTAATTATGGCGATGAGCATTCATCTCTCGCAGAGTGGTCTTGGCGCCACATTCAAGCCGGAAGCAACATAGAAGAGTTGCTTGACAAAGAAGTAATGGAACCAAGTCACTTGAATGGAATGTGCAAAGTTTTCAAACTTGGTGTGATGTGTACTTCAACACTTCCATCTAGTAGACCTTCCATGAAGGAGGTGGTAGAAGTATTGCTCAATTGTGGAGAATTGTTTGGTTATGCAGAGAGGAATATTGGACTTATTAATGATGTTGTTCCACTTCTTAGAAATTCAAAAAGAGAGAGTAAGTTGGATATTGATGATGATAGCTAG

Protein sequence

>MS.gene059547.t1

MNGSVTGLTLVNYNINQTIPSFICDLKNLTHVDFNNNYIPGMFPTYLYNCSKLEYLDLSMNNFVGKIPENIFTLSNLNYLNLSYTNFTDDIPSSIGKLKKLRFLALQVCLFDGTFPDEIGDLVNLETLDLSNNLFKSSTLPLSWTKLSKLKVFYMYVCNLFGEMPESMGEMVSLEDLDISQNGLTGKIPSGLFMLKNLRRMLLSRNDLSGELPDVVEALNLTIIDLAQNNLTGKIPADFGKLQKLTGLSLPVNNFSGEIPQSIGQLPSLIDFKVFMNNLSGTLPPDFGLHSKLRTFHITTNRFEGRLPKNLCYHGQLQNLTAYENHLSGELPESLGNCSSLLEVKIYSNEFYGKIPSGLWRAENLVYFMISHNKFNGELPQNLSSSISLLDISYNQFYGGIPIGVSSWTNVVEFMASKNNLNGSIPQEITSLHKLQTLLLDQNQLKGPLPFDVISWNSLLTLNLRQNQLSGEIPASIGYLPDLSVLDLSDNQFSGEIPSIAPRITVLDLSSNRLTGRVPSAFENSAFDRSFLNNSGLCADTPTLNLTLCNSNSNTQSESKDSSLSSTLIVILVVVSVLAASLILFVIIKLYRKRKQGSDNSSWKLTSFQRLNFTESDIVSSMTENNIIGSGGYGTVYRVTIDGLGYVAVKKIWENRKLDQNLEKSFHTEVKILSSIRHRNIVKLLCCISNDDTMLLVYEYVENRSLDRWLQKKKTVRSSTLLSRSVHHVVLDWPKRLQIAIGVAQGLSYMHHECSPPVVHRDVKTSNILLDSQFNAKVADFGLARMLISPGEVATMSAVIGSFGYMAPEYIQTTKVSEKIDVYSFGVILLELTTGKEANYGDEHSSLAEWSWRHIQAGSNIEELLDKEVMEPSHLNGMCKVFKLGVMCTSTLPSSRPSMKEVVEVLLNCGELFGYAERNIGLINDVVPLLRNSKRESKLDIDDDS