AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene07397

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07397.t1 MTR_1g093100 96.789 436 14 0 1 436 1 436 0.0 853
MS.gene07397.t1 MTR_1g072420 53.333 450 174 8 3 435 4 434 3.53e-155 446
MS.gene07397.t1 MTR_2g022450 50.998 451 180 9 1 435 4 429 1.24e-143 417
MS.gene07397.t1 MTR_1g072450 51.345 446 178 11 8 435 9 433 6.85e-143 415
MS.gene07397.t1 MTR_1g072380 50.679 442 174 9 20 435 27 450 2.27e-140 409
MS.gene07397.t1 MTR_4g117090 44.394 437 191 14 28 430 33 451 6.43e-100 306
MS.gene07397.t1 MTR_2g022460 38.717 421 206 11 31 434 26 411 4.03e-79 251
MS.gene07397.t1 MTR_2g022320 40.308 454 209 14 1 429 1 417 1.40e-76 244
MS.gene07397.t1 MTR_2g022430 38.901 455 216 17 1 428 1 420 5.29e-74 238
MS.gene07397.t1 MTR_2g022370 37.613 444 220 15 13 431 8 419 1.87e-72 234
MS.gene07397.t1 MTR_7g113790 34.110 472 238 17 1 435 1 436 1.87e-71 232
MS.gene07397.t1 MTR_2g022380 36.607 448 223 15 13 431 8 423 1.94e-68 224
MS.gene07397.t1 MTR_2g022350 36.937 444 221 15 13 428 8 420 1.97e-66 219
MS.gene07397.t1 MTR_2g022480 36.279 430 228 13 3 409 4 410 1.87e-64 213
MS.gene07397.t1 MTR_2g022490 37.656 401 208 12 28 409 27 404 7.47e-64 212
MS.gene07397.t1 MTR_1g093130 64.024 164 41 2 221 384 9 154 1.55e-58 190
MS.gene07397.t1 MTR_0252s0030 38.356 219 111 8 183 387 138 346 5.54e-31 122
MS.gene07397.t1 MTR_3g046300 26.343 391 223 14 55 420 106 456 2.44e-19 90.5
MS.gene07397.t1 MTR_5g091130 25.952 420 235 18 32 420 177 551 2.36e-16 81.6
MS.gene07397.t1 MTR_7g105850 24.249 466 257 17 7 417 36 460 1.55e-15 79.0
MS.gene07397.t1 MTR_1g111350 24.402 418 239 14 18 417 104 462 1.91e-14 75.5
MS.gene07397.t1 MTR_8g103880 23.276 348 218 12 44 376 114 427 3.34e-14 74.7
MS.gene07397.t1 MTR_3g097150 26.400 375 204 17 28 368 75 411 7.38e-13 70.5
MS.gene07397.t1 MTR_5g012490 23.411 299 173 11 144 417 197 464 1.16e-12 70.1
MS.gene07397.t1 MTR_7g117430 25.635 394 216 17 46 417 141 479 2.40e-12 68.9
MS.gene07397.t1 MTR_3g068000 23.348 454 276 20 4 417 15 436 4.02e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07397.t1 AT1G03220 51.106 452 184 10 1 435 1 432 2.81e-141 411
MS.gene07397.t1 AT1G03230 50.233 430 178 9 23 435 23 433 1.66e-135 396
MS.gene07397.t1 AT5G19120 34.180 433 211 13 1 417 1 375 4.65e-55 187
MS.gene07397.t1 AT5G19110 31.944 432 245 13 10 430 8 401 3.68e-52 180
MS.gene07397.t1 AT5G19110 31.944 432 245 13 10 430 44 437 7.90e-52 181
MS.gene07397.t1 AT5G48430 29.204 452 250 18 1 431 1 403 5.13e-42 153
MS.gene07397.t1 AT5G19100 33.148 359 176 13 64 410 59 365 1.54e-41 152
MS.gene07397.t1 AT3G52500 24.416 471 247 23 12 417 36 462 1.00e-15 79.3
MS.gene07397.t1 AT3G25700 25.240 313 186 12 35 318 72 365 5.00e-15 77.4
MS.gene07397.t1 AT1G09750 25.749 334 210 9 28 346 85 395 1.05e-14 76.3
MS.gene07397.t1 AT3G54400 23.077 390 229 13 44 417 85 419 1.52e-14 75.5
MS.gene07397.t1 AT2G42980 24.940 417 246 16 29 417 142 519 1.10e-13 73.2
MS.gene07397.t1 AT5G02190 24.936 393 219 19 60 417 86 437 2.08e-13 72.4
MS.gene07397.t1 AT2G39710 24.156 385 228 18 60 417 78 425 1.93e-12 69.3
MS.gene07397.t1 AT1G25510 23.325 403 233 12 35 419 136 480 2.78e-12 68.9
MS.gene07397.t1 AT5G36260 24.000 425 248 18 23 417 49 428 3.38e-12 68.6
MS.gene07397.t1 AT3G18490 24.054 370 226 15 25 376 140 472 1.44e-11 66.6

Find 78 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAAATCTATTAGAGTTTC+TGG 0.165523 1.2:+64307374 MS.gene07397:CDS
AGGATTAACGGTGCTAATTT+TGG 0.222002 1.2:-64307456 None:intergenic
AATAAATTTGCAATTTGTTT+AGG 0.256299 1.2:+64307197 MS.gene07397:CDS
ACTGCGCCAAGTTCTTTCTT+AGG 0.277102 1.2:+64307323 MS.gene07397:CDS
TAATTTGTTGCAATTTGATT+TGG 0.302015 1.2:+64307835 MS.gene07397:CDS
TGGTTCCACCAAATCCATTT+TGG 0.303617 1.2:-64307436 None:intergenic
TCTATAGACCAAAATGGATT+TGG 0.304145 1.2:+64307428 MS.gene07397:CDS
GAACTTGGCGCAGTGCTAAC+AGG 0.339315 1.2:-64307314 None:intergenic
TCCACAAATGGAAACTATTC+TGG 0.339835 1.2:+64307026 MS.gene07397:CDS
ATGGGAAGAACTAGTGCTTT+TGG 0.342491 1.2:-64306711 None:intergenic
TCAAAGAGAGAAATGGTAAA+AGG 0.347826 1.2:-64306653 None:intergenic
CGTTAATCCTTACACAATAA+TGG 0.348904 1.2:+64307469 MS.gene07397:CDS
ACCAGAATAGTTTCCATTTG+TGG 0.353898 1.2:-64307027 None:intergenic
AATGTGGTTTGGAATATTAT+TGG 0.355763 1.2:+64307656 MS.gene07397:CDS
CACTATTGGTGCACATCAAT+TGG 0.356503 1.2:+64307808 MS.gene07397:CDS
TCACCTTACAACACTGTAAC+AGG 0.361909 1.2:+64306957 MS.gene07397:CDS
AAGCATTAGTTCTTCAAGAA+TGG 0.377077 1.2:+64307592 MS.gene07397:CDS
TGATAAGGATGTGATTTGTT+TGG 0.378748 1.2:+64307703 MS.gene07397:CDS
AGATCAATGGTTAGGTTGAT+TGG 0.385333 1.2:-64306801 None:intergenic
GTTGAACCTGTAGCACCATT+TGG 0.387509 1.2:+64307551 MS.gene07397:CDS
CCAATAGTGATTGAAGTCAT+TGG 0.390759 1.2:-64307794 None:intergenic
CATTATTGTGTAAGGATTAA+CGG 0.392138 1.2:-64307468 None:intergenic
GGCAGAAGTGTCTCTAGTTA+TGG 0.393595 1.2:-64306730 None:intergenic
GATAAGGATGTGATTTGTTT+GGG 0.395759 1.2:+64307704 MS.gene07397:CDS
GAAGACTCCATTATTGTGTA+AGG 0.405084 1.2:-64307476 None:intergenic
CCAATGACTTCAATCACTAT+TGG 0.423745 1.2:+64307794 MS.gene07397:CDS
GCAGAAGTGTCTCTAGTTAT+GGG 0.427479 1.2:-64306729 None:intergenic
AAATCAGATGAGTATTTCAT+TGG 0.428391 1.2:+64307350 MS.gene07397:CDS
GTCAAAGGTATGGCTGGTCT+TGG 0.431367 1.2:+64307122 MS.gene07397:CDS
AATTTGATTTGGCTACTTCA+AGG 0.431390 1.2:+64307846 MS.gene07397:CDS
GATTTGGCTACTTCAAGGCT+TGG 0.435992 1.2:+64307851 MS.gene07397:CDS
AGCATTAGTTCTTCAAGAAT+GGG 0.436185 1.2:+64307593 MS.gene07397:CDS
GGTTCAAGTGTTGTACAAAA+TGG 0.447374 1.2:+64307086 MS.gene07397:CDS
GTTTCAGTTCAATCCACAAA+TGG 0.450626 1.2:+64307014 MS.gene07397:CDS
CATGTTCCAAATGGTGCTAC+AGG 0.465297 1.2:-64307557 None:intergenic
TCATCTCAATGCTCACTCTT+CGG 0.468149 1.2:+64306897 MS.gene07397:CDS
TGCTCACTCTTCGGTTCACA+TGG 0.475656 1.2:+64306906 MS.gene07397:CDS
CTAACAGGGTTTGTAATAAG+AGG 0.475903 1.2:-64307299 None:intergenic
ATCAACCTAACCATTGATCT+TGG 0.483505 1.2:+64306804 MS.gene07397:CDS
AGATCAATGGAAGGAACATC+TGG 0.485151 1.2:-64307617 None:intergenic
AATGGTTCGTATTAATGATA+AGG 0.488541 1.2:+64307688 MS.gene07397:CDS
TGAGATGAGCTACATAGGAT+TGG 0.490397 1.2:-64306882 None:intergenic
ATTCTGCAACACAAGATCAA+TGG 0.498997 1.2:-64307630 None:intergenic
AGAGGTTTGTGCTAAGGAGG+TGG 0.500953 1.2:-64306682 None:intergenic
ATAGACCAAAATGGATTTGG+TGG 0.508375 1.2:+64307431 MS.gene07397:CDS
AAGGGTGTCAAAGGTATGGC+TGG 0.510377 1.2:+64307116 MS.gene07397:CDS
TTGATTTGAGTAGTGTATTG+AGG 0.510903 1.2:-64306759 None:intergenic
TGCAGAATGAGAATGTGGTT+TGG 0.511364 1.2:+64307645 MS.gene07397:CDS
GTAACAGGTGTGTCCACATC+TGG 0.519945 1.2:+64306972 MS.gene07397:CDS
ATTTGTTTAGGTACTCAAGA+TGG 0.523453 1.2:+64307209 MS.gene07397:CDS
ACACCTGTTACAGTGTTGTA+AGG 0.525207 1.2:-64306960 None:intergenic
TGCTAAGGGTGTCAAAGGTA+TGG 0.525240 1.2:+64307112 MS.gene07397:CDS
AGTTTAACTGAGGAAGCCAT+TGG 0.532184 1.2:-64306624 None:intergenic
TCATCAGTGTTCAATAGATA+AGG 0.532661 1.2:-64307254 None:intergenic
ATAGCCACCACCAAGATCAA+TGG 0.536373 1.2:-64306814 None:intergenic
GGTCTTGCTAAGGGTGTCAA+AGG 0.536708 1.2:+64307107 MS.gene07397:CDS
GAGATGATCAAAGAGAGAAA+TGG 0.541198 1.2:-64306660 None:intergenic
CACCACCAAGATCAATGGTT+AGG 0.541567 1.2:-64306809 None:intergenic
AACCTAACCATTGATCTTGG+TGG 0.541576 1.2:+64306807 MS.gene07397:CDS
TCTGAAAGAGGTTTGTGCTA+AGG 0.560245 1.2:-64306688 None:intergenic
CTTGCAAAACATGTTCCAAA+TGG 0.563050 1.2:-64307566 None:intergenic
AACTTGGCGCAGTGCTAACA+GGG 0.570600 1.2:-64307313 None:intergenic
AAGGTATGGCTGGTCTTGGA+AGG 0.572528 1.2:+64307126 MS.gene07397:CDS
GAAAGAGGTTTGTGCTAAGG+AGG 0.580034 1.2:-64306685 None:intergenic
CTAACCATTGATCTTGGTGG+TGG 0.588038 1.2:+64306810 MS.gene07397:CDS
TGTACAAAATGGTCTTGCTA+AGG 0.594025 1.2:+64307097 MS.gene07397:CDS
AGCATTGAGATGAGCTACAT+AGG 0.594102 1.2:-64306887 None:intergenic
AAAGCTGATGAAAATTGTGA+AGG 0.597985 1.2:-64307164 None:intergenic
AGTAGTGTATTGAGGTGTTG+AGG 0.599355 1.2:-64306751 None:intergenic
TATTATTGGAGCTAATGCAA+TGG 0.621482 1.2:+64307670 MS.gene07397:CDS
AAGGATGAAGAGTTTAACTG+AGG 0.626120 1.2:-64306634 None:intergenic
TGACTGAATGTCACCAGATG+TGG 0.628722 1.2:-64306985 None:intergenic
GTACAAAATGGTCTTGCTAA+GGG 0.632901 1.2:+64307098 MS.gene07397:CDS
TGCAACACAAGATCAATGGA+AGG 0.634453 1.2:-64307626 None:intergenic
GTTAGGTTGATTGGTACAAG+TGG 0.638523 1.2:-64306792 None:intergenic
TTACAGTGTTGTAAGGTGAA+CGG 0.641762 1.2:-64306953 None:intergenic
TGTGTTGCAGAATGAGAATG+TGG 0.642355 1.2:+64307640 MS.gene07397:CDS
AATTAAGTTCTAAACAGATG+AGG 0.652970 1.2:-64307924 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAATTTGCAATTTGTTT+AGG + chr1.2:64307197-64307216 MS.gene07397:CDS 15.0%
!!! ATTTTGGTCTATAGATAAAA+GGG - chr1.2:64307423-64307442 None:intergenic 20.0%
!!! TAATTTGTTGCAATTTGATT+TGG + chr1.2:64307835-64307854 MS.gene07397:CDS 20.0%
! AAATCAGATGAGTATTTCAT+TGG + chr1.2:64307350-64307369 MS.gene07397:CDS 25.0%
! AATGGTTCGTATTAATGATA+AGG + chr1.2:64307688-64307707 MS.gene07397:CDS 25.0%
! CATTATTGTGTAAGGATTAA+CGG - chr1.2:64307471-64307490 None:intergenic 25.0%
! CCACAAATAAAAAGAAAGTT+AGG - chr1.2:64307068-64307087 None:intergenic 25.0%
!! AATGTGGTTTGGAATATTAT+TGG + chr1.2:64307656-64307675 MS.gene07397:CDS 25.0%
!! CTTTTATCTATAGACCAAAA+TGG + chr1.2:64307422-64307441 MS.gene07397:CDS 25.0%
!!! CATTTTGGTCTATAGATAAA+AGG - chr1.2:64307424-64307443 None:intergenic 25.0%
!!! CCTAACTTTCTTTTTATTTG+TGG + chr1.2:64307065-64307084 MS.gene07397:CDS 25.0%
AAAGCTGATGAAAATTGTGA+AGG - chr1.2:64307167-64307186 None:intergenic 30.0%
ATTTGTTTAGGTACTCAAGA+TGG + chr1.2:64307209-64307228 MS.gene07397:CDS 30.0%
CGTTAATCCTTACACAATAA+TGG + chr1.2:64307469-64307488 MS.gene07397:CDS 30.0%
GTGAAATCTATTAGAGTTTC+TGG + chr1.2:64307374-64307393 MS.gene07397:CDS 30.0%
TATTATTGGAGCTAATGCAA+TGG + chr1.2:64307670-64307689 MS.gene07397:CDS 30.0%
TCAAAGAGAGAAATGGTAAA+AGG - chr1.2:64306656-64306675 None:intergenic 30.0%
TCATCAGTGTTCAATAGATA+AGG - chr1.2:64307257-64307276 None:intergenic 30.0%
TGCAGTGACAAAAAAATATG+TGG + chr1.2:64306930-64306949 MS.gene07397:CDS 30.0%
TTTGCAAAAACTTCTCAAGT+TGG + chr1.2:64307749-64307768 MS.gene07397:CDS 30.0%
! AAGCATTAGTTCTTCAAGAA+TGG + chr1.2:64307592-64307611 MS.gene07397:CDS 30.0%
! AGCATTAGTTCTTCAAGAAT+GGG + chr1.2:64307593-64307612 MS.gene07397:CDS 30.0%
! TCTATAGACCAAAATGGATT+TGG + chr1.2:64307428-64307447 MS.gene07397:CDS 30.0%
! TTGATTTGAGTAGTGTATTG+AGG - chr1.2:64306762-64306781 None:intergenic 30.0%
! TTTTCACCTAAGAAAGAACT+TGG - chr1.2:64307332-64307351 None:intergenic 30.0%
!! AATTTGATTTGGCTACTTCA+AGG + chr1.2:64307846-64307865 MS.gene07397:CDS 30.0%
!! GATAAGGATGTGATTTGTTT+GGG + chr1.2:64307704-64307723 MS.gene07397:CDS 30.0%
!! TGATAAGGATGTGATTTGTT+TGG + chr1.2:64307703-64307722 MS.gene07397:CDS 30.0%
!!! ACATAGGATTGGTTTTAAAG+TGG - chr1.2:64306874-64306893 None:intergenic 30.0%
AAGGATGAAGAGTTTAACTG+AGG - chr1.2:64306637-64306656 None:intergenic 35.0%
ACCAGAATAGTTTCCATTTG+TGG - chr1.2:64307030-64307049 None:intergenic 35.0%
ATCAACCTAACCATTGATCT+TGG + chr1.2:64306804-64306823 MS.gene07397:CDS 35.0%
ATTCTGCAACACAAGATCAA+TGG - chr1.2:64307633-64307652 None:intergenic 35.0%
CCAATAGTGATTGAAGTCAT+TGG - chr1.2:64307797-64307816 None:intergenic 35.0%
CCAATGACTTCAATCACTAT+TGG + chr1.2:64307794-64307813 MS.gene07397:CDS 35.0%
CTAACAGGGTTTGTAATAAG+AGG - chr1.2:64307302-64307321 None:intergenic 35.0%
CTTGCAAAACATGTTCCAAA+TGG - chr1.2:64307569-64307588 None:intergenic 35.0%
GAAGACTCCATTATTGTGTA+AGG - chr1.2:64307479-64307498 None:intergenic 35.0%
GAGATGATCAAAGAGAGAAA+TGG - chr1.2:64306663-64306682 None:intergenic 35.0%
GTTTCAGTTCAATCCACAAA+TGG + chr1.2:64307014-64307033 MS.gene07397:CDS 35.0%
TCCACAAATGGAAACTATTC+TGG + chr1.2:64307026-64307045 MS.gene07397:CDS 35.0%
TTACAGTGTTGTAAGGTGAA+CGG - chr1.2:64306956-64306975 None:intergenic 35.0%
! ATAGACCAAAATGGATTTGG+TGG + chr1.2:64307431-64307450 MS.gene07397:CDS 35.0%
! CAAGATGGTGTACTTTTCTT+TGG + chr1.2:64307224-64307243 MS.gene07397:CDS 35.0%
! GGTTCAAGTGTTGTACAAAA+TGG + chr1.2:64307086-64307105 MS.gene07397:CDS 35.0%
! GTACAAAATGGTCTTGCTAA+GGG + chr1.2:64307098-64307117 MS.gene07397:CDS 35.0%
! TGTACAAAATGGTCTTGCTA+AGG + chr1.2:64307097-64307116 MS.gene07397:CDS 35.0%
!! AGATCAATGGTTAGGTTGAT+TGG - chr1.2:64306804-64306823 None:intergenic 35.0%
!! AGGATTAACGGTGCTAATTT+TGG - chr1.2:64307459-64307478 None:intergenic 35.0%
!!! AACTTCTCAAGTTGGTTTTG+TGG + chr1.2:64307757-64307776 MS.gene07397:CDS 35.0%
!!! TGTGATTTGTTTGGGTTTTG+TGG + chr1.2:64307712-64307731 MS.gene07397:CDS 35.0%
AACCTAACCATTGATCTTGG+TGG + chr1.2:64306807-64306826 MS.gene07397:CDS 40.0%
ACACCTGTTACAGTGTTGTA+AGG - chr1.2:64306963-64306982 None:intergenic 40.0%
AGATCAATGGAAGGAACATC+TGG - chr1.2:64307620-64307639 None:intergenic 40.0%
CACTATTGGTGCACATCAAT+TGG + chr1.2:64307808-64307827 MS.gene07397:CDS 40.0%
TCACCTTACAACACTGTAAC+AGG + chr1.2:64306957-64306976 MS.gene07397:CDS 40.0%
TCATCTCAATGCTCACTCTT+CGG + chr1.2:64306897-64306916 MS.gene07397:CDS 40.0%
TCTGAAAGAGGTTTGTGCTA+AGG - chr1.2:64306691-64306710 None:intergenic 40.0%
TGAGATGAGCTACATAGGAT+TGG - chr1.2:64306885-64306904 None:intergenic 40.0%
TGCAACACAAGATCAATGGA+AGG - chr1.2:64307629-64307648 None:intergenic 40.0%
TGCAGAATGAGAATGTGGTT+TGG + chr1.2:64307645-64307664 MS.gene07397:CDS 40.0%
TGTGTTGCAGAATGAGAATG+TGG + chr1.2:64307640-64307659 MS.gene07397:CDS 40.0%
! AGCATTGAGATGAGCTACAT+AGG - chr1.2:64306890-64306909 None:intergenic 40.0%
! ATGGGAAGAACTAGTGCTTT+TGG - chr1.2:64306714-64306733 None:intergenic 40.0%
! GGTGTACTTTTCTTTGGTGA+TGG + chr1.2:64307230-64307249 MS.gene07397:CDS 40.0%
! TAGTGCTTTTGGTCTGAAAG+AGG - chr1.2:64306703-64306722 None:intergenic 40.0%
! TGGTTCCACCAAATCCATTT+TGG - chr1.2:64307439-64307458 None:intergenic 40.0%
!! AGTAGTGTATTGAGGTGTTG+AGG - chr1.2:64306754-64306773 None:intergenic 40.0%
!! CTACTTCAAGGCTTGGTTTT+AGG + chr1.2:64307858-64307877 MS.gene07397:CDS 40.0%
!! GCAGAAGTGTCTCTAGTTAT+GGG - chr1.2:64306732-64306751 None:intergenic 40.0%
!! GTTAGGTTGATTGGTACAAG+TGG - chr1.2:64306795-64306814 None:intergenic 40.0%
!!! ATCTTGGTGGTGGCTATTTT+TGG + chr1.2:64306820-64306839 MS.gene07397:CDS 40.0%
!!! TCTTGGTGGTGGCTATTTTT+GGG + chr1.2:64306821-64306840 MS.gene07397:CDS 40.0%
!!! TGGTTTTAGGTCACTCTTCT+TGG + chr1.2:64307871-64307890 MS.gene07397:CDS 40.0%
ACTGCGCCAAGTTCTTTCTT+AGG + chr1.2:64307323-64307342 MS.gene07397:CDS 45.0%
ATAGCCACCACCAAGATCAA+TGG - chr1.2:64306817-64306836 None:intergenic 45.0%
CACCACCAAGATCAATGGTT+AGG - chr1.2:64306812-64306831 None:intergenic 45.0%
CTAACCATTGATCTTGGTGG+TGG + chr1.2:64306810-64306829 MS.gene07397:CDS 45.0%
GAAAGAGGTTTGTGCTAAGG+AGG - chr1.2:64306688-64306707 None:intergenic 45.0%
GATTTGGCTACTTCAAGGCT+TGG + chr1.2:64307851-64307870 MS.gene07397:CDS 45.0%
GTTGAACCTGTAGCACCATT+TGG + chr1.2:64307551-64307570 MS.gene07397:CDS 45.0%
TGACTGAATGTCACCAGATG+TGG - chr1.2:64306988-64307007 None:intergenic 45.0%
!! CATGTTCCAAATGGTGCTAC+AGG - chr1.2:64307560-64307579 None:intergenic 45.0%
!! GGCAGAAGTGTCTCTAGTTA+TGG - chr1.2:64306733-64306752 None:intergenic 45.0%
!! TGCTAAGGGTGTCAAAGGTA+TGG + chr1.2:64307112-64307131 MS.gene07397:CDS 45.0%
!! TGTTTGGGTTTTGTGGATGC+TGG + chr1.2:64307719-64307738 MS.gene07397:CDS 45.0%
!!! TCTCAAGTTGGTTTTGTGGC+TGG + chr1.2:64307761-64307780 MS.gene07397:CDS 45.0%
AACTTGGCGCAGTGCTAACA+GGG - chr1.2:64307316-64307335 None:intergenic 50.0%
AGAGGTTTGTGCTAAGGAGG+TGG - chr1.2:64306685-64306704 None:intergenic 50.0%
GTAACAGGTGTGTCCACATC+TGG + chr1.2:64306972-64306991 MS.gene07397:CDS 50.0%
TGCTCACTCTTCGGTTCACA+TGG + chr1.2:64306906-64306925 MS.gene07397:CDS 50.0%
!! AAGGGTGTCAAAGGTATGGC+TGG + chr1.2:64307116-64307135 MS.gene07397:CDS 50.0%
!! AAGGTATGGCTGGTCTTGGA+AGG + chr1.2:64307126-64307145 MS.gene07397:CDS 50.0%
!! GGTCTTGCTAAGGGTGTCAA+AGG + chr1.2:64307107-64307126 MS.gene07397:CDS 50.0%
!! GTCAAAGGTATGGCTGGTCT+TGG + chr1.2:64307122-64307141 MS.gene07397:CDS 50.0%
!!! CAAGTTGGTTTTGTGGCTGG+TGG + chr1.2:64307764-64307783 MS.gene07397:CDS 50.0%
GAACTTGGCGCAGTGCTAAC+AGG - chr1.2:64307317-64307336 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 64306627 64307937 64306627 ID=MS.gene07397
chr1.2 mRNA 64306627 64307937 64306627 ID=MS.gene07397.t1;Parent=MS.gene07397
chr1.2 exon 64306627 64307937 64306627 ID=MS.gene07397.t1.exon1;Parent=MS.gene07397.t1
chr1.2 CDS 64306627 64307937 64306627 ID=cds.MS.gene07397.t1;Parent=MS.gene07397.t1
Gene Sequence

>MS.gene07397

ATGGCTTCCTCAGTTAAACTCTTCATCCTTTTACCATTTCTCTCTTTGATCATCTCCACCTCCTTAGCACAAACCTCTTTCAGACCAAAAGCACTAGTTCTTCCCATAACTAGAGACACTTCTGCCTCAACACCTCAATACACTACTCAAATCAAACAAAGAACACCACTTGTACCAATCAACCTAACCATTGATCTTGGTGGTGGCTATTTTTGGGTGAACTGTGACAAGAGCTATGTCTCATCCACTTTAAAACCAATCCTATGTAGCTCATCTCAATGCTCACTCTTCGGTTCACATGGTTGCAGTGACAAAAAAATATGTGGCCGTTCACCTTACAACACTGTAACAGGTGTGTCCACATCTGGTGACATTCAGTCAGATGTTGTTTCAGTTCAATCCACAAATGGAAACTATTCTGGTAGATTTGTTTCTGTTCCTAACTTTCTTTTTATTTGTGGTTCAAGTGTTGTACAAAATGGTCTTGCTAAGGGTGTCAAAGGTATGGCTGGTCTTGGAAGGACTAAAGTGTCACTTCCTTCACAATTTTCATCAGCTTTTAGTTTCAAGAATAAATTTGCAATTTGTTTAGGTACTCAAGATGGTGTACTTTTCTTTGGTGATGGACCTTATCTATTGAACACTGATGAATCTAAAAATCTTATTTTCACACCTCTTATTACAAACCCTGTTAGCACTGCGCCAAGTTCTTTCTTAGGTGAAAAATCAGATGAGTATTTCATTGGTGTGAAATCTATTAGAGTTTCTGGTAAAAATGTAAAGTTGAACACAACCCTTTTATCTATAGACCAAAATGGATTTGGTGGAACCAAAATTAGCACCGTTAATCCTTACACAATAATGGAGTCTTCAATTTATAAAGCAGTTGCTGATGCTTTTGTGAAAGCATTAAATGTTTCTACTGTTGAACCTGTAGCACCATTTGGAACATGTTTTGCAAGTCAAAGCATTAGTTCTTCAAGAATGGGACCAGATGTTCCTTCCATTGATCTTGTGTTGCAGAATGAGAATGTGGTTTGGAATATTATTGGAGCTAATGCAATGGTTCGTATTAATGATAAGGATGTGATTTGTTTGGGTTTTGTGGATGCTGGTTCTGATTTTGCAAAAACTTCTCAAGTTGGTTTTGTGGCTGGTGGTTCTAAACCAATGACTTCAATCACTATTGGTGCACATCAATTGGAGAATAATTTGTTGCAATTTGATTTGGCTACTTCAAGGCTTGGTTTTAGGTCACTCTTCTTGGAGCATGATAATTGTGCAAACTTTAATTTTACCTCATCTGTTTAG
Protein sequence

>MS.gene07397.t1

MASSVKLFILLPFLSLIISTSLAQTSFRPKALVLPITRDTSASTPQYTTQIKQRTPLVPINLTIDLGGGYFWVNCDKSYVSSTLKPILCSSSQCSLFGSHGCSDKKICGRSPYNTVTGVSTSGDIQSDVVSVQSTNGNYSGRFVSVPNFLFICGSSVVQNGLAKGVKGMAGLGRTKVSLPSQFSSAFSFKNKFAICLGTQDGVLFFGDGPYLLNTDESKNLIFTPLITNPVSTAPSSFLGEKSDEYFIGVKSIRVSGKNVKLNTTLLSIDQNGFGGTKISTVNPYTIMESSIYKAVADAFVKALNVSTVEPVAPFGTCFASQSISSSRMGPDVPSIDLVLQNENVVWNIIGANAMVRINDKDVICLGFVDAGSDFAKTSQVGFVAGGSKPMTSITIGAHQLENNLLQFDLATSRLGFRSLFLEHDNCANFNFTSSV