AlfalfaGEDB | MS.gene47109

M. sativa cultivar XinJiangDaYe / MS.gene47109

KEGG: -
GO: -
PFAM: PF01490.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47109.t1	XP_013451392.1	97.4	455	12	0	1	455	1	455	3.90E-258	900.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47109.t1	Q9FKS8	79.7	438	89	0	18	455	9	446	6.4e-209	728.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47109.t1	A0A072U700	97.4	455	12	0	1	455	1	455	2.8e-258	900.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049483	MS.gene47109	0.817839	2.68E-52	-1.69E-46
MS.gene049573	MS.gene47109	0.817202	3.73E-52	-1.69E-46
MS.gene050129	MS.gene47109	0.822047	2.92E-53	-1.69E-46
MS.gene050363	MS.gene47109	0.853202	2.79E-61	-1.69E-46
MS.gene050381	MS.gene47109	0.826295	2.93E-54	-1.69E-46
MS.gene050883	MS.gene47109	0.825984	3.48E-54	-1.69E-46
MS.gene051127	MS.gene47109	0.813116	3.01E-51	-1.69E-46
MS.gene05141	MS.gene47109	0.81851	1.89E-52	-1.69E-46
MS.gene051946	MS.gene47109	0.840949	6.39E-58	-1.69E-46
MS.gene052053	MS.gene47109	0.832252	1.05E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene47109.t1	MTR_6g022790	97.363	455	12	0	1	455	1	455	921
MS.gene47109.t1	MTR_7g038910	84.758	433	66	0	23	455	11	443	732
MS.gene47109.t1	MTR_2g101920	75.439	456	105	2	1	455	12	461	701
MS.gene47109.t1	MTR_6g023065	74.839	465	105	3	1	455	1	463	690
MS.gene47109.t1	MTR_6g022780	78.322	429	90	2	28	455	2	428	662
MS.gene47109.t1	MTR_6g023075	76.347	427	100	1	30	455	2	428	648
MS.gene47109.t1	MTR_8g080120	66.898	432	143	0	24	455	5	436	640
MS.gene47109.t1	MTR_7g038910	85.393	356	52	0	23	378	11	366	637
MS.gene47109.t1	MTR_2g096830	74.769	432	103	2	25	455	2	428	621
MS.gene47109.t1	MTR_7g038910	85.057	348	52	0	23	370	11	358	620

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47109.t1	AT5G40780	79.680	438	89	0	18	455	9	446	0.0	746
MS.gene47109.t1	AT5G40780	81.156	398	75	0	58	455	1	398	0.0	687
MS.gene47109.t1	AT5G40780	81.156	398	75	0	58	455	1	398	0.0	687
MS.gene47109.t1	AT1G48640	75.113	442	107	2	14	455	15	453	0.0	680
MS.gene47109.t1	AT1G24400	76.157	432	103	0	24	455	10	441	0.0	670
MS.gene47109.t1	AT1G67640	74.201	438	113	0	18	455	4	441	0.0	645
MS.gene47109.t1	AT1G61270	63.719	441	153	3	9	445	1	438	0.0	585
MS.gene47109.t1	AT3G01760	64.450	436	145	5	17	445	5	437	0.0	575
MS.gene47109.t1	AT1G25530	59.907	429	171	1	28	455	12	440	0.0	527
MS.gene47109.t1	AT1G71680	59.142	443	180	1	14	455	6	448	2.86e-179	509

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Find 102 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAGGTCTTTATATTG+TGG	0.515105	6.3:-16321965	MS.gene47109:CDS
AAAATTTGGCTTGTCATGGT+GGG	0.574283	6.3:-16319207	MS.gene47109:CDS
AAACGAGACAATGTAGAGTA+TGG	0.381120	6.3:-16320584	MS.gene47109:CDS
AACATTGTTTATATGGTCAC+TGG	0.449490	6.3:-16321910	MS.gene47109:CDS
AACCATCCAAAGTTCCAATG+TGG	0.666559	6.3:-16320433	MS.gene47109:CDS
AACTAGGTCAACATGCCTTT+GGG	0.402352	6.3:-16321990	MS.gene47109:CDS
AATGATTGTATCTCCCATTG+GGG	0.599812	6.3:-16319046	MS.gene47109:CDS
AATGGTTGAGATGCATGAAA+TGG	0.555074	6.3:-16322043	MS.gene47109:CDS
AATGTATTGTGCAGGGGTCC+AGG	0.434625	6.3:-16322117	MS.gene47109:intron
AATTTCTGGTGTGTCCTTGG+CGG	0.548611	6.3:-16321761	MS.gene47109:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATGGACAAACATGTGT+TGG	+	chr6.3:16320242-16320261	None:intergenic	30.0%
AACATTGTGAATGCTGAAAA+GGG	+	chr6.3:16323629-16323648	None:intergenic	30.0%
AACATTGTTTATATGGTCAC+TGG	-	chr6.3:16321225-16321244	MS.gene47109:intron	30.0%
AAGAAAAAATGTATGGCCTA+CGG	+	chr6.3:16319828-16319847	None:intergenic	30.0%
ACTAATAGAAAAATGTGTGC+TGG	+	chr6.3:16323241-16323260	None:intergenic	30.0%
AGATTGAAGAAAAATCAGAG+AGG	-	chr6.3:16320595-16320614	MS.gene47109:CDS	30.0%
AGCATAATATTTGCCCTAAA+TGG	+	chr6.3:16323153-16323172	None:intergenic	30.0%
ATAAGGTAAAAGATATCGCA+TGG	+	chr6.3:16320409-16320428	None:intergenic	30.0%
ATATTTGGAAATGAGGTTGA+TGG	-	chr6.3:16322794-16322813	MS.gene47109:intron	30.0%
ATCCTAAAGTTAAACTTGGT+TGG	+	chr6.3:16320049-16320068	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	16318996	16324161	16318996	ID=MS.gene47109
chr6.3	mRNA	16318996	16324161	16318996	ID=MS.gene47109.t1;Parent=MS.gene47109
chr6.3	exon	16324096	16324161	16324096	ID=MS.gene47109.t1.exon1;Parent=MS.gene47109.t1
chr6.3	CDS	16324096	16324161	16324096	ID=cds.MS.gene47109.t1;Parent=MS.gene47109.t1
chr6.3	exon	16322403	16322560	16322403	ID=MS.gene47109.t1.exon2;Parent=MS.gene47109.t1
chr6.3	CDS	16322403	16322560	16322403	ID=cds.MS.gene47109.t1;Parent=MS.gene47109.t1
chr6.3	exon	16321742	16322125	16321742	ID=MS.gene47109.t1.exon3;Parent=MS.gene47109.t1
chr6.3	CDS	16321742	16322125	16321742	ID=cds.MS.gene47109.t1;Parent=MS.gene47109.t1
chr6.3	exon	16320253	16320646	16320253	ID=MS.gene47109.t1.exon4;Parent=MS.gene47109.t1
chr6.3	CDS	16320253	16320646	16320253	ID=cds.MS.gene47109.t1;Parent=MS.gene47109.t1
chr6.3	exon	16319626	16319731	16319626	ID=MS.gene47109.t1.exon5;Parent=MS.gene47109.t1
chr6.3	CDS	16319626	16319731	16319626	ID=cds.MS.gene47109.t1;Parent=MS.gene47109.t1
chr6.3	exon	16319430	16319521	16319430	ID=MS.gene47109.t1.exon6;Parent=MS.gene47109.t1
chr6.3	CDS	16319430	16319521	16319430	ID=cds.MS.gene47109.t1;Parent=MS.gene47109.t1
chr6.3	exon	16319199	16319267	16319199	ID=MS.gene47109.t1.exon7;Parent=MS.gene47109.t1
chr6.3	CDS	16319199	16319267	16319199	ID=cds.MS.gene47109.t1;Parent=MS.gene47109.t1
chr6.3	exon	16318996	16319094	16318996	ID=MS.gene47109.t1.exon8;Parent=MS.gene47109.t1
chr6.3	CDS	16318996	16319094	16318996	ID=cds.MS.gene47109.t1;Parent=MS.gene47109.t1

Gene Sequence

>MS.gene47109

ATGGCAAGTTTGGAAACTGAATCACTAAATGGTCATCCCAACTCAAGTCCTAATCACCAGAGACCTGTAAGTTTCTCTCAATCATCATTGCATCTCTTAATCTCTCTTATTTATAACATATATCTTATACTATACTATATCTTATCTTATTACTCTTATATTTGTTTGTTTTTCATGTTTTCATTCTTCTTATTCTTATGATAGATATTTTAATTTTACAACATCTTAGAATATTTTTTTCGTGTAACTCAGAATGTTTTTTTTAATAACTCAGAATGTTTTTTAAAAGTAAGAGTTTAATTTCCTTTCAAAAAAAAAGTAAGAGTTTAATTTATATGCAAACTCCCTAAAATAAATAACCATTTTTGTTTTGGATTGCCATGGTATTGGTATGAAGTTTCTACCACCATTTAATGATGACTAATCTTCAACAAGAAACTTATAGAACACACAAAATGAGTTCTCCATCTTTCCAGCCAAATTTTCTTCATACGCTTGACAACTTGTTTTAGAGACCCAAGTTCCCTATCATTTGAACTAATTCATTGTTGGTAATAAATAACCATTTAAAATGAAATACAATTCATCCATCTCATATTATATTATGTGTTTCATTATGAAATATTTATGTGCTAATATATAGATATTTTAGTTTAATATTTTATATTAAAAATTGGTATAAACATCACTTTCTTAAAAGTTTTGAATATTCCAACTGAGAAATATAATAAGAAGCATAGGTAGTATAAACAAAATAAGATGCATAATATAGGACAGGTCATACCTTTTACTTTTCTTTAAAACAGAAAATTCAACATATCAGTGTGTCCCGTAGGCCATACATTTTTTCTTCGTACACTTGCCTTGTAACGGAAGAAACTAGAGCTAGAAATAGAATACGTTAGTTAAGTTTGACTTATTTTTGATTCCATTGACCCAAAAGCATTTTAAAAGTCAAAATTTCAAGATCTAGATCTAGTTAAAGATAAGCAATTTTAGAAATTATTATTACGGTAAAGAGATAAGGCATGATAAACACCTTAATGTCAACCAACCAAGTTTAACTTTAGGATAGTGTGACGTTATACACAATTTATTTCTTTGTATAAGTTGTGAGGTGTAAACATATTATTTTTATGTAAATAGGTCAACTTGCCTCAAAATTATTACTCAGAGTATTTTTTACAACTAAATTACTCAAAGTTATTTTTTTTTATTTGAAACTAGCATTCAGACGGACATTCCAACACATGTTTGTCCATTTTTTTTTACTTCGCTAACACGTGTAAATTATAAACAATATTTTTTTTATGAAAATTTGATTTTGATTAAAGTTATATGTATGGTTGTTTGTGACTTTAAATAGTAACAAATTTGTTTATCTTTTACCAATAATAAAACAAATATAATCCATGCGATATCTTTTACCTTATTGAACGCGGTATTCTTATCTTTTTCAATAACACTAACAATATCGCGTTCTTAAAAGCATACATACATACATACATACATACATACATACATACATACGAGAATATAGATTGATTATATATGTAGCTTAAATTAATCTGATGTCCATTTAATTTTGTGTTATTAAACAGATTGAAGAAAAATCAGAGAGGGACAAGAGAATTGATGAGTGGCTTCCAATTACATCTAAAAGGAATGCAAAATGGTGGTACTCAGCTTTTCACAATGTCACTGCCATGGTTGGAGCTGGTGTTCTAGGTCTCCCCCATGCCATGGCACAACTTGGATGGTATACTTCAATTCAAATCCAAATTGCATTGTAGCATGAGCTTTTTTCTATTAAAAAAATCTTATTTATATTTAAGTATGTTTTAATTCCTTAATCTTGCAAGAATTTTTTTTCATTCCATCTAAGTTTTCTAAGTGTTACTTCCTCCGTCTTATATTATATGTTTCATTTTTGTTTTTAAAATATTATGAATTTTTCTGCAAAATTTCATTCAAACACATGGATTCTACATATGAGTTTACTTTAAAGAAGGGATTTCCCTTAATGTATTGTGCAGGGGTCCAGGTGTAACCATACTTATTCTTTCATGGATCATCACATTATACACACTTTGGCAAATGGTTGAGATGCATGAAATGGTTCCAGGAAAACGTTTTGATAGATACCATGAACTAGGTCAACATGCCTTTGGGAAAAAACTAGGTCTTTATATTGTGGTGCCTCAACAACTTGTGGTAGAAATTGGTGTTAACATTGTTTATATGGTCACTGGAGGAACATCATTGCAAAAGTTCCATGATATTGTGTGTCCAAGCTGCAAAAAGATAAAGTTAACCTATTTCATCATGATATTTGCTTCAGTTCACTTTGTGTTATCTCATCTCCCTGATTTCAACTCAATTTCTGGTGTGTCCTTGGCGGCAGCAGTCATGTCCTTCAGGTATAAAACTTTTATTTTTTTTAAAATATTTTCATTCAATGATAATTCTCAAGTTATAATTTTTTGGATCGGATTTTTTGTAGTTAATGTAGCATACAGTTTCACGCTATAAGCGATCTTCATCGCTGATTTGGCACTAGACAGTTCATATCATACATTAAGTTTCACACAAATAACTGGACTCATCTCTCGACTCAGATCGAGCGGTCGAGATGTATACTACATGATGTAGCTGTTGCGCCTAATCCAAATCCAATTTTTCTAGTTGAATGAGAAAAATACTACGAAGATTGCACGACTATTAGGCTTGGCAATAGGACAGGGTGGGGACAGGTTTTATCTTCCCCGTCCCCATACCCTACTCTCAAAGAGTTCGCTCGTTACCCTACCCATACTCAACGGGGATGAGAAATCGCATTTCATCCCCGTCCCCAACGTGTTTAGGTATATGCTCCGTCCTCGAGTGGATAATTTTTTTTCAATTAAAAAAGAAGTACTTTCCAGCGCCTGGCTCAATGTTTTAATGCATTATCCAGCAAAGAGATGATATCGATCAGTGGCTATGGTGATGGAGAAGAGTGAGACCGAGGGTGTGAGATGTGGAAGGAGAAGATAGAGAGAACTTAGAGAAGTGAGTGTCATATGAAAGACTGAGACATTGATTGTGTAAGTGAAATGATTTAGAGTTTAAGTTTTTATTTATATAAAAGGGATAATAGATTGATTTTTTACATTCGAGACTGGTTTAGATATGGGTTCGGCGTGGGTACTTATATCCCTATTACACGTCATGTACCGTATTTTGAAATCGGGGAAAATCCAATCACATACCCAAACTTAGTCAAAGCGAGAAAAACCTATCAATTTAGGTTTGGTTCGGACAGTACCCACGGGTATGGACTTTGTTGCCATGTCTAACGGTTGTATACCATATTTAGAAATCAAGTTTGAAATACTACTTGAAATAGGAGCATTTTAATCTTCATAACATAGAAGATCAACCATGACAAAAACTTTAATGACTAAGAATACAAATTAATGAAATGCACTAGACAACATGTTAATTTAAACTTTGGTATTTGCATTTTTCTACAGCTACTCTACAATTTCATGGGCAGCTAGTATAGATAAAGGAAAACGAGACAATGTAGAGTATGGATATAAGGCACATAGTACTGCAGGAACAGTCTTTGACTTCTTTAATGCACTTGGCACTATTGCTTTTGCCTATGCTGGTCACAATGTGGTGTTGGAGATCCAAGCAACAATTCCATCAACACCTGAGAAACCATCCAAAGTTCCAATGTGGAGAGGAGTTGTTGTTGCATACATTGTTGTGGCTTTATGCTACTTCCCTGTTGCTCTTATTGGTTACTGGATATTTGGAAATGAGGTTGATGGTGACATCCTCATATCTTTACAGAAACCTGCATGGCTTATTGCAATGGCTAACATGTTTGTTGTTATTCATGTGATTGGAAGTTATCAGGTAAAATTTTGTTTCTCTTCTTTTTATCAAGTAGTCTAGCGGCTAGAATTCACTTTTTTCAAATTGAATAAGCTGGATGTCCGGGGTTCAAACCTCAACCCCTGCATATAGCAATGCATGTCCTTGCCAACTGAGCTATGCTCACGGAGACATGTTTCTTTATGGTTTTTAATTGTATCAAATTAGTCATCTGAGTTTTTTTTTGTCGCACATAGGTCATTTAAGTTGTATTATGTGTATATTGACCATTTAGGGCAAATATTATGCTAGAAATAAGTTAAACGATCATCTTTGGTATGAGGAGTGCTAGTAATACGCTCTAAAATACTCTTTCCAGCACACATTTTTCTATTAGTACAATTCAAATGATTTCCACTAAATCATGCGTGTTCTGCATAATTGTATTGAGATTCTTGAATTTCAACGAACAAAACATATTGTGTTGAGAAGAATGTGTTCTTGCATTATTATTTTGTAAAAGTCAATTAAAATATACTAATTTCATTGTTTTTGTGATATAGATTTATGCAATGCCTGTGTTTGACATGATTGAAACTGTGTTGGTGAAGAAAATGAATTTTGAACCAAGTACAATGCTTCGGTTTATTGTACGTAATGTATATGTTGGTAAGTAATCTCTATGTATGAGAAATAACTTATTATGTCAATTTTTTCAAATATTTTTACTTTGGTTCAATGCATTGACAATATAATTTTTTTTCCCTTTTCAGCATTCACAATGTTCATTGCTATTACATTCCCTTTTTTCGATGGCCTTCTAGGATTTTTTGGAGGGTTCGCTTTTGCTCCAACAACATACTTTGTAAGTCATTAACAATTGAAAATTTTGTCCCGTAAGTGTAGCTCAGTTGGTAGCTACCAGGGATATTTTGTAAAAAAAAAAAAAATTTGAAAATTTCAATATAATAAATTTCCTTTGGAATATTAAAATTATCATTGCTTATTGATTTTATTGAATTTCCAGCTTCCATGTATCATGTGGCTTTCAATCTACAAACCAAGAAAATTTGGCTTGTCATGGTGGGCTAATTGGGTATGTATATTTGAATTTTGATTTTGTTTCAAGTTATTTTTTCATATATAATTCATCATTTTTAAGCTAATATTTAATGTATTTTACTTCACTTATTATTACAGATATGCATTGTGCTTGGCCTATGTTTAATGATTGTATCTCCCATTGGGGGATTGAGGACAATCATAATTAAAGCTAAGACCTACAAGTTTTACTCATAG

Protein sequence

>MS.gene47109.t1

MASLETESLNGHPNSSPNHQRPIEEKSERDKRIDEWLPITSKRNAKWWYSAFHNVTAMVGAGVLGLPHAMAQLGWGPGVTILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGKKLGLYIVVPQQLVVEIGVNIVYMVTGGTSLQKFHDIVCPSCKKIKLTYFIMIFASVHFVLSHLPDFNSISGVSLAAAVMSFSYSTISWAASIDKGKRDNVEYGYKAHSTAGTVFDFFNALGTIAFAYAGHNVVLEIQATIPSTPEKPSKVPMWRGVVVAYIVVALCYFPVALIGYWIFGNEVDGDILISLQKPAWLIAMANMFVVIHVIGSYQIYAMPVFDMIETVLVKKMNFEPSTMLRFIVRNVYVAFTMFIAITFPFFDGLLGFFGGFAFAPTTYFLPCIMWLSIYKPRKFGLSWWANWICIVLGLCLMIVSPIGGLRTIIIKAKTYKFYS