AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52937

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52937.t1 MTR_1g093100 96.789 436 14 0 1 436 1 436 0.0 853
MS.gene52937.t1 MTR_1g072420 53.333 450 174 8 3 435 4 434 3.53e-155 446
MS.gene52937.t1 MTR_2g022450 50.998 451 180 9 1 435 4 429 1.24e-143 417
MS.gene52937.t1 MTR_1g072450 51.345 446 178 11 8 435 9 433 6.85e-143 415
MS.gene52937.t1 MTR_1g072380 50.679 442 174 9 20 435 27 450 2.27e-140 409
MS.gene52937.t1 MTR_4g117090 44.394 437 191 14 28 430 33 451 6.43e-100 306
MS.gene52937.t1 MTR_2g022460 38.717 421 206 11 31 434 26 411 4.03e-79 251
MS.gene52937.t1 MTR_2g022320 40.308 454 209 14 1 429 1 417 1.40e-76 244
MS.gene52937.t1 MTR_2g022430 38.901 455 216 17 1 428 1 420 5.29e-74 238
MS.gene52937.t1 MTR_2g022370 37.613 444 220 15 13 431 8 419 1.87e-72 234
MS.gene52937.t1 MTR_7g113790 34.110 472 238 17 1 435 1 436 1.87e-71 232
MS.gene52937.t1 MTR_2g022380 36.607 448 223 15 13 431 8 423 1.94e-68 224
MS.gene52937.t1 MTR_2g022350 36.937 444 221 15 13 428 8 420 1.97e-66 219
MS.gene52937.t1 MTR_2g022480 36.279 430 228 13 3 409 4 410 1.87e-64 213
MS.gene52937.t1 MTR_2g022490 37.656 401 208 12 28 409 27 404 7.47e-64 212
MS.gene52937.t1 MTR_1g093130 64.024 164 41 2 221 384 9 154 1.55e-58 190
MS.gene52937.t1 MTR_0252s0030 38.356 219 111 8 183 387 138 346 5.54e-31 122
MS.gene52937.t1 MTR_3g046300 26.343 391 223 14 55 420 106 456 2.44e-19 90.5
MS.gene52937.t1 MTR_5g091130 25.952 420 235 18 32 420 177 551 2.36e-16 81.6
MS.gene52937.t1 MTR_7g105850 24.249 466 257 17 7 417 36 460 1.55e-15 79.0
MS.gene52937.t1 MTR_1g111350 24.402 418 239 14 18 417 104 462 1.91e-14 75.5
MS.gene52937.t1 MTR_8g103880 23.276 348 218 12 44 376 114 427 3.34e-14 74.7
MS.gene52937.t1 MTR_3g097150 26.400 375 204 17 28 368 75 411 7.38e-13 70.5
MS.gene52937.t1 MTR_5g012490 23.411 299 173 11 144 417 197 464 1.16e-12 70.1
MS.gene52937.t1 MTR_7g117430 25.635 394 216 17 46 417 141 479 2.40e-12 68.9
MS.gene52937.t1 MTR_3g068000 23.348 454 276 20 4 417 15 436 4.02e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52937.t1 AT1G03220 51.106 452 184 10 1 435 1 432 2.81e-141 411
MS.gene52937.t1 AT1G03230 50.233 430 178 9 23 435 23 433 1.66e-135 396
MS.gene52937.t1 AT5G19120 34.180 433 211 13 1 417 1 375 4.65e-55 187
MS.gene52937.t1 AT5G19110 31.944 432 245 13 10 430 8 401 3.68e-52 180
MS.gene52937.t1 AT5G19110 31.944 432 245 13 10 430 44 437 7.90e-52 181
MS.gene52937.t1 AT5G48430 29.204 452 250 18 1 431 1 403 5.13e-42 153
MS.gene52937.t1 AT5G19100 33.148 359 176 13 64 410 59 365 1.54e-41 152
MS.gene52937.t1 AT3G52500 24.416 471 247 23 12 417 36 462 1.00e-15 79.3
MS.gene52937.t1 AT3G25700 25.240 313 186 12 35 318 72 365 5.00e-15 77.4
MS.gene52937.t1 AT1G09750 25.749 334 210 9 28 346 85 395 1.05e-14 76.3
MS.gene52937.t1 AT3G54400 23.077 390 229 13 44 417 85 419 1.52e-14 75.5
MS.gene52937.t1 AT2G42980 24.940 417 246 16 29 417 142 519 1.10e-13 73.2
MS.gene52937.t1 AT5G02190 24.936 393 219 19 60 417 86 437 2.08e-13 72.4
MS.gene52937.t1 AT2G39710 24.156 385 228 18 60 417 78 425 1.93e-12 69.3
MS.gene52937.t1 AT1G25510 23.325 403 233 12 35 419 136 480 2.78e-12 68.9
MS.gene52937.t1 AT5G36260 24.000 425 248 18 23 417 49 428 3.38e-12 68.6
MS.gene52937.t1 AT3G18490 24.054 370 226 15 25 376 140 472 1.44e-11 66.6

Find 79 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAAATCTATTAGAGTTTC+TGG 0.165523 1.1:-57026001 MS.gene52937:CDS
AGGATTAACGGTGCTAATTT+TGG 0.222002 1.1:+57025919 None:intergenic
AATAAATTTGCAATTTGTTT+AGG 0.256299 1.1:-57026178 MS.gene52937:CDS
ACTGCGCCAAGTTCTTTCTT+AGG 0.277102 1.1:-57026052 MS.gene52937:CDS
TAATTTGTTGCAATTTGATT+TGG 0.302015 1.1:-57025540 MS.gene52937:CDS
TGGTTCCACCAAATCCATTT+TGG 0.303617 1.1:+57025939 None:intergenic
TCTATAGACCAAAATGGATT+TGG 0.304145 1.1:-57025947 MS.gene52937:CDS
ATGGGGAGAACTAGTGCTTT+TGG 0.320730 1.1:+57026664 None:intergenic
GGCTGAAGTGTCTCTGGTTA+TGG 0.323019 1.1:+57026645 None:intergenic
GAACTTGGCGCAGTGCTAAC+AGG 0.339315 1.1:+57026061 None:intergenic
TCCACAAATGGAAACTATTC+TGG 0.339835 1.1:-57026349 MS.gene52937:CDS
CGTTAATCCTTACACAATAA+TGG 0.348904 1.1:-57025906 MS.gene52937:CDS
ACCAGAATAGTTTCCATTTG+TGG 0.353898 1.1:+57026348 None:intergenic
AATGTGGTTTGGAATATTAT+TGG 0.355763 1.1:-57025719 MS.gene52937:CDS
CACTATTGGTGCACATCAAT+TGG 0.356503 1.1:-57025567 MS.gene52937:CDS
TCACCTTACAACACTGTAAC+AGG 0.361909 1.1:-57026418 MS.gene52937:CDS
GCTGAAGTGTCTCTGGTTAT+GGG 0.368075 1.1:+57026646 None:intergenic
AAGCATTAGTTCTTCAAGAA+TGG 0.377077 1.1:-57025783 MS.gene52937:CDS
TGATAAGGATGTGATTTGTT+TGG 0.378748 1.1:-57025672 MS.gene52937:CDS
AGATCAATGGTTAGGTTGAT+TGG 0.385333 1.1:+57026574 None:intergenic
GTTGAACCTGTAGCACCATT+TGG 0.387509 1.1:-57025824 MS.gene52937:CDS
CCAATAGTGATTGAAGTCAT+TGG 0.390759 1.1:+57025581 None:intergenic
CATTATTGTGTAAGGATTAA+CGG 0.392138 1.1:+57025907 None:intergenic
GATAAGGATGTGATTTGTTT+GGG 0.395759 1.1:-57025671 MS.gene52937:CDS
GAAGACTCCATTATTGTGTA+AGG 0.405084 1.1:+57025899 None:intergenic
CCAATGACTTCAATCACTAT+TGG 0.423745 1.1:-57025581 MS.gene52937:CDS
AAATCAGATGAGTATTTCAT+TGG 0.428391 1.1:-57026025 MS.gene52937:CDS
GTCAAAGGTATGGCTGGTCT+TGG 0.431367 1.1:-57026253 MS.gene52937:CDS
AATTTGATTTGGCTACTTCA+AGG 0.431390 1.1:-57025529 MS.gene52937:CDS
GATTTGGCTACTTCAAGGCT+TGG 0.435992 1.1:-57025524 MS.gene52937:CDS
AGCATTAGTTCTTCAAGAAT+GGG 0.436185 1.1:-57025782 MS.gene52937:CDS
GGTTCAAGTGTTGTACAAAA+TGG 0.447374 1.1:-57026289 MS.gene52937:CDS
GTTTCAGTTCAATCCACAAA+TGG 0.450626 1.1:-57026361 MS.gene52937:CDS
TGTTGAGGCTGAAGTGTCTC+TGG 0.458870 1.1:+57026639 None:intergenic
CATGTTCCAAATGGTGCTAC+AGG 0.465297 1.1:+57025818 None:intergenic
TCATCTCAATGCTCACTCTT+CGG 0.468149 1.1:-57026478 MS.gene52937:CDS
TGCTCACTCTTCGGTTCACA+TGG 0.475656 1.1:-57026469 MS.gene52937:CDS
CTAACAGGGTTTGTAATAAG+AGG 0.475903 1.1:+57026076 None:intergenic
ATCAACCTAACCATTGATCT+TGG 0.483505 1.1:-57026571 MS.gene52937:CDS
TTGATTTGAGTTGTGTATTG+TGG 0.483818 1.1:+57026616 None:intergenic
AGATCAATGGAAGGAACATC+TGG 0.485151 1.1:+57025758 None:intergenic
AATGGTTCGTATTAATGATA+AGG 0.488541 1.1:-57025687 MS.gene52937:CDS
TGAGATGAGCTACATAGGAT+TGG 0.490397 1.1:+57026493 None:intergenic
ATTCTGCAACACAAGATCAA+TGG 0.498997 1.1:+57025745 None:intergenic
ATAGACCAAAATGGATTTGG+TGG 0.508375 1.1:-57025944 MS.gene52937:CDS
AAGGGTGTCAAAGGTATGGC+TGG 0.510377 1.1:-57026259 MS.gene52937:CDS
TGCAGAATGAGAATGTGGTT+TGG 0.511364 1.1:-57025730 MS.gene52937:CDS
GTAACAGGTGTGTCCACATC+TGG 0.519945 1.1:-57026403 MS.gene52937:CDS
ATTTGTTTAGGTACTCAAGA+TGG 0.523453 1.1:-57026166 MS.gene52937:CDS
ACACCTGTTACAGTGTTGTA+AGG 0.525207 1.1:+57026415 None:intergenic
TGCTAAGGGTGTCAAAGGTA+TGG 0.525240 1.1:-57026263 MS.gene52937:CDS
AGTTTAACTGAGGAAGCCAT+TGG 0.532184 1.1:+57026751 None:intergenic
TCATCAGTGTTCAATAGATA+AGG 0.532661 1.1:+57026121 None:intergenic
ATAGCCACCACCAAGATCAA+TGG 0.536373 1.1:+57026561 None:intergenic
GGTCTTGCTAAGGGTGTCAA+AGG 0.536708 1.1:-57026268 MS.gene52937:CDS
GAGATGATCAAAGAGAGAAA+TGG 0.541198 1.1:+57026715 None:intergenic
CACCACCAAGATCAATGGTT+AGG 0.541567 1.1:+57026566 None:intergenic
AACCTAACCATTGATCTTGG+TGG 0.541576 1.1:-57026568 MS.gene52937:CDS
CTTGCAAAACATGTTCCAAA+TGG 0.563050 1.1:+57025809 None:intergenic
AGTTGTGTATTGTGGTGTTG+AGG 0.567636 1.1:+57026624 None:intergenic
AACTTGGCGCAGTGCTAACA+GGG 0.570600 1.1:+57026062 None:intergenic
AAGGTATGGCTGGTCTTGGA+AGG 0.572528 1.1:-57026249 MS.gene52937:CDS
TGAGGTTTGTGCTAAGGAGG+TGG 0.573754 1.1:+57026693 None:intergenic
CTGAAGTGTCTCTGGTTATG+GGG 0.584887 1.1:+57026647 None:intergenic
CTAACCATTGATCTTGGTGG+TGG 0.588038 1.1:-57026565 MS.gene52937:CDS
TGTACAAAATGGTCTTGCTA+AGG 0.594025 1.1:-57026278 MS.gene52937:CDS
AGCATTGAGATGAGCTACAT+AGG 0.594102 1.1:+57026488 None:intergenic
AAAGCTGATGAAAATTGTGA+AGG 0.597985 1.1:+57026211 None:intergenic
TCTGAATGAGGTTTGTGCTA+AGG 0.602149 1.1:+57026687 None:intergenic
GAATGAGGTTTGTGCTAAGG+AGG 0.612021 1.1:+57026690 None:intergenic
TATTATTGGAGCTAATGCAA+TGG 0.621482 1.1:-57025705 MS.gene52937:CDS
TGACTGAATGTCACCAGATG+TGG 0.628722 1.1:+57026390 None:intergenic
GTACAAAATGGTCTTGCTAA+GGG 0.632901 1.1:-57026277 MS.gene52937:CDS
TGCAACACAAGATCAATGGA+AGG 0.634453 1.1:+57025749 None:intergenic
GTTAGGTTGATTGGTACAAG+TGG 0.638523 1.1:+57026583 None:intergenic
TTACAGTGTTGTAAGGTGAA+CGG 0.641762 1.1:+57026422 None:intergenic
TGTGTTGCAGAATGAGAATG+TGG 0.642355 1.1:-57025735 MS.gene52937:CDS
AATTAAGTTCTAAACAGATG+AGG 0.652970 1.1:+57025451 None:intergenic
CAGAATGAAGAGTTTAACTG+AGG 0.682589 1.1:+57026741 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAATTTGCAATTTGTTT+AGG - chr1.1:57026030-57026049 MS.gene52937:CDS 15.0%
!!! ATTTTGGTCTATAGATAAAA+GGG + chr1.1:57026256-57026275 None:intergenic 20.0%
!!! TAATTTGTTGCAATTTGATT+TGG - chr1.1:57026668-57026687 MS.gene52937:CDS 20.0%
! AAATCAGATGAGTATTTCAT+TGG - chr1.1:57026183-57026202 MS.gene52937:CDS 25.0%
! AATGGTTCGTATTAATGATA+AGG - chr1.1:57026521-57026540 MS.gene52937:CDS 25.0%
! CATTATTGTGTAAGGATTAA+CGG + chr1.1:57026304-57026323 None:intergenic 25.0%
! CCACAAATAAAAAGAAAGTT+AGG + chr1.1:57025901-57025920 None:intergenic 25.0%
!! AATGTGGTTTGGAATATTAT+TGG - chr1.1:57026489-57026508 MS.gene52937:CDS 25.0%
!! CTTTTATCTATAGACCAAAA+TGG - chr1.1:57026255-57026274 MS.gene52937:CDS 25.0%
!!! CATTTTGGTCTATAGATAAA+AGG + chr1.1:57026257-57026276 None:intergenic 25.0%
!!! CCTAACTTTCTTTTTATTTG+TGG - chr1.1:57025898-57025917 MS.gene52937:CDS 25.0%
AAAGCTGATGAAAATTGTGA+AGG + chr1.1:57026000-57026019 None:intergenic 30.0%
ATTTGTTTAGGTACTCAAGA+TGG - chr1.1:57026042-57026061 MS.gene52937:CDS 30.0%
CGTTAATCCTTACACAATAA+TGG - chr1.1:57026302-57026321 MS.gene52937:CDS 30.0%
GTGAAATCTATTAGAGTTTC+TGG - chr1.1:57026207-57026226 MS.gene52937:CDS 30.0%
TATTATTGGAGCTAATGCAA+TGG - chr1.1:57026503-57026522 MS.gene52937:CDS 30.0%
TCATCAGTGTTCAATAGATA+AGG + chr1.1:57026090-57026109 None:intergenic 30.0%
TGCAGTGACAAAAAAATATG+TGG - chr1.1:57025763-57025782 MS.gene52937:CDS 30.0%
TTTGCAAAAACTTCTCAAGT+TGG - chr1.1:57026582-57026601 MS.gene52937:CDS 30.0%
! AAGCATTAGTTCTTCAAGAA+TGG - chr1.1:57026425-57026444 MS.gene52937:CDS 30.0%
! AGCATTAGTTCTTCAAGAAT+GGG - chr1.1:57026426-57026445 MS.gene52937:CDS 30.0%
! TCTATAGACCAAAATGGATT+TGG - chr1.1:57026261-57026280 MS.gene52937:CDS 30.0%
! TTTTCACCTAAGAAAGAACT+TGG + chr1.1:57026165-57026184 None:intergenic 30.0%
!! AATTTGATTTGGCTACTTCA+AGG - chr1.1:57026679-57026698 MS.gene52937:CDS 30.0%
!! GATAAGGATGTGATTTGTTT+GGG - chr1.1:57026537-57026556 MS.gene52937:CDS 30.0%
!! TGATAAGGATGTGATTTGTT+TGG - chr1.1:57026536-57026555 MS.gene52937:CDS 30.0%
!! TTGATTTGAGTTGTGTATTG+TGG + chr1.1:57025595-57025614 None:intergenic 30.0%
!!! ACATAGGATTGGTTTTAAAG+TGG + chr1.1:57025707-57025726 None:intergenic 30.0%
ACCAGAATAGTTTCCATTTG+TGG + chr1.1:57025863-57025882 None:intergenic 35.0%
ATCAACCTAACCATTGATCT+TGG - chr1.1:57025637-57025656 MS.gene52937:CDS 35.0%
ATTCTGCAACACAAGATCAA+TGG + chr1.1:57026466-57026485 None:intergenic 35.0%
CAGAATGAAGAGTTTAACTG+AGG + chr1.1:57025470-57025489 None:intergenic 35.0%
CCAATAGTGATTGAAGTCAT+TGG + chr1.1:57026630-57026649 None:intergenic 35.0%
CCAATGACTTCAATCACTAT+TGG - chr1.1:57026627-57026646 MS.gene52937:CDS 35.0%
CTAACAGGGTTTGTAATAAG+AGG + chr1.1:57026135-57026154 None:intergenic 35.0%
CTTGCAAAACATGTTCCAAA+TGG + chr1.1:57026402-57026421 None:intergenic 35.0%
GAAGACTCCATTATTGTGTA+AGG + chr1.1:57026312-57026331 None:intergenic 35.0%
GAGATGATCAAAGAGAGAAA+TGG + chr1.1:57025496-57025515 None:intergenic 35.0%
GTTTCAGTTCAATCCACAAA+TGG - chr1.1:57025847-57025866 MS.gene52937:CDS 35.0%
TCCACAAATGGAAACTATTC+TGG - chr1.1:57025859-57025878 MS.gene52937:CDS 35.0%
TTACAGTGTTGTAAGGTGAA+CGG + chr1.1:57025789-57025808 None:intergenic 35.0%
! ATAGACCAAAATGGATTTGG+TGG - chr1.1:57026264-57026283 MS.gene52937:CDS 35.0%
! CAAGATGGTGTACTTTTCTT+TGG - chr1.1:57026057-57026076 MS.gene52937:CDS 35.0%
! GGTTCAAGTGTTGTACAAAA+TGG - chr1.1:57025919-57025938 MS.gene52937:CDS 35.0%
! GTACAAAATGGTCTTGCTAA+GGG - chr1.1:57025931-57025950 MS.gene52937:CDS 35.0%
! TGTACAAAATGGTCTTGCTA+AGG - chr1.1:57025930-57025949 MS.gene52937:CDS 35.0%
!! AGATCAATGGTTAGGTTGAT+TGG + chr1.1:57025637-57025656 None:intergenic 35.0%
!! AGGATTAACGGTGCTAATTT+TGG + chr1.1:57026292-57026311 None:intergenic 35.0%
!!! AACTTCTCAAGTTGGTTTTG+TGG - chr1.1:57026590-57026609 MS.gene52937:CDS 35.0%
!!! TGTGATTTGTTTGGGTTTTG+TGG - chr1.1:57026545-57026564 MS.gene52937:CDS 35.0%
AACCTAACCATTGATCTTGG+TGG - chr1.1:57025640-57025659 MS.gene52937:CDS 40.0%
ACACCTGTTACAGTGTTGTA+AGG + chr1.1:57025796-57025815 None:intergenic 40.0%
AGATCAATGGAAGGAACATC+TGG + chr1.1:57026453-57026472 None:intergenic 40.0%
CACTATTGGTGCACATCAAT+TGG - chr1.1:57026641-57026660 MS.gene52937:CDS 40.0%
TCACCTTACAACACTGTAAC+AGG - chr1.1:57025790-57025809 MS.gene52937:CDS 40.0%
TCATCTCAATGCTCACTCTT+CGG - chr1.1:57025730-57025749 MS.gene52937:CDS 40.0%
TCTGAATGAGGTTTGTGCTA+AGG + chr1.1:57025524-57025543 None:intergenic 40.0%
TGAGATGAGCTACATAGGAT+TGG + chr1.1:57025718-57025737 None:intergenic 40.0%
TGCAACACAAGATCAATGGA+AGG + chr1.1:57026462-57026481 None:intergenic 40.0%
TGCAGAATGAGAATGTGGTT+TGG - chr1.1:57026478-57026497 MS.gene52937:CDS 40.0%
TGTGTTGCAGAATGAGAATG+TGG - chr1.1:57026473-57026492 MS.gene52937:CDS 40.0%
! AGCATTGAGATGAGCTACAT+AGG + chr1.1:57025723-57025742 None:intergenic 40.0%
! AGTTGTGTATTGTGGTGTTG+AGG + chr1.1:57025587-57025606 None:intergenic 40.0%
! GGTGTACTTTTCTTTGGTGA+TGG - chr1.1:57026063-57026082 MS.gene52937:CDS 40.0%
! TAGTGCTTTTGGTCTGAATG+AGG + chr1.1:57025536-57025555 None:intergenic 40.0%
! TGGTTCCACCAAATCCATTT+TGG + chr1.1:57026272-57026291 None:intergenic 40.0%
!! CTACTTCAAGGCTTGGTTTT+AGG - chr1.1:57026691-57026710 MS.gene52937:CDS 40.0%
!! GTTAGGTTGATTGGTACAAG+TGG + chr1.1:57025628-57025647 None:intergenic 40.0%
!!! ATCTTGGTGGTGGCTATTTT+TGG - chr1.1:57025653-57025672 MS.gene52937:CDS 40.0%
!!! TCTTGGTGGTGGCTATTTTT+GGG - chr1.1:57025654-57025673 MS.gene52937:CDS 40.0%
!!! TGGTTTTAGGTCACTCTTCT+TGG - chr1.1:57026704-57026723 MS.gene52937:CDS 40.0%
ACTGCGCCAAGTTCTTTCTT+AGG - chr1.1:57026156-57026175 MS.gene52937:CDS 45.0%
ATAGCCACCACCAAGATCAA+TGG + chr1.1:57025650-57025669 None:intergenic 45.0%
CACCACCAAGATCAATGGTT+AGG + chr1.1:57025645-57025664 None:intergenic 45.0%
CTAACCATTGATCTTGGTGG+TGG - chr1.1:57025643-57025662 MS.gene52937:CDS 45.0%
GAATGAGGTTTGTGCTAAGG+AGG + chr1.1:57025521-57025540 None:intergenic 45.0%
GATTTGGCTACTTCAAGGCT+TGG - chr1.1:57026684-57026703 MS.gene52937:CDS 45.0%
GTTGAACCTGTAGCACCATT+TGG - chr1.1:57026384-57026403 MS.gene52937:CDS 45.0%
TGACTGAATGTCACCAGATG+TGG + chr1.1:57025821-57025840 None:intergenic 45.0%
! ATGGGGAGAACTAGTGCTTT+TGG + chr1.1:57025547-57025566 None:intergenic 45.0%
! CTGAAGTGTCTCTGGTTATG+GGG + chr1.1:57025564-57025583 None:intergenic 45.0%
! GCTGAAGTGTCTCTGGTTAT+GGG + chr1.1:57025565-57025584 None:intergenic 45.0%
!! CATGTTCCAAATGGTGCTAC+AGG + chr1.1:57026393-57026412 None:intergenic 45.0%
!! TGCTAAGGGTGTCAAAGGTA+TGG - chr1.1:57025945-57025964 MS.gene52937:CDS 45.0%
!! TGTTTGGGTTTTGTGGATGC+TGG - chr1.1:57026552-57026571 MS.gene52937:CDS 45.0%
!!! TCTCAAGTTGGTTTTGTGGC+TGG - chr1.1:57026594-57026613 MS.gene52937:CDS 45.0%
AACTTGGCGCAGTGCTAACA+GGG + chr1.1:57026149-57026168 None:intergenic 50.0%
GTAACAGGTGTGTCCACATC+TGG - chr1.1:57025805-57025824 MS.gene52937:CDS 50.0%
TGAGGTTTGTGCTAAGGAGG+TGG + chr1.1:57025518-57025537 None:intergenic 50.0%
TGCTCACTCTTCGGTTCACA+TGG - chr1.1:57025739-57025758 MS.gene52937:CDS 50.0%
! GGCTGAAGTGTCTCTGGTTA+TGG + chr1.1:57025566-57025585 None:intergenic 50.0%
! TGTTGAGGCTGAAGTGTCTC+TGG + chr1.1:57025572-57025591 None:intergenic 50.0%
!! AAGGGTGTCAAAGGTATGGC+TGG - chr1.1:57025949-57025968 MS.gene52937:CDS 50.0%
!! AAGGTATGGCTGGTCTTGGA+AGG - chr1.1:57025959-57025978 MS.gene52937:CDS 50.0%
!! GGTCTTGCTAAGGGTGTCAA+AGG - chr1.1:57025940-57025959 MS.gene52937:CDS 50.0%
!! GTCAAAGGTATGGCTGGTCT+TGG - chr1.1:57025955-57025974 MS.gene52937:CDS 50.0%
!!! CAAGTTGGTTTTGTGGCTGG+TGG - chr1.1:57026597-57026616 MS.gene52937:CDS 50.0%
GAACTTGGCGCAGTGCTAAC+AGG + chr1.1:57026150-57026169 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 57025460 57026770 57025460 ID=MS.gene52937
chr1.1 mRNA 57025460 57026770 57025460 ID=MS.gene52937.t1;Parent=MS.gene52937
chr1.1 exon 57025460 57026770 57025460 ID=MS.gene52937.t1.exon1;Parent=MS.gene52937.t1
chr1.1 CDS 57025460 57026770 57025460 ID=cds.MS.gene52937.t1;Parent=MS.gene52937.t1
Gene Sequence

>MS.gene52937

ATGGCTTCCTCAGTTAAACTCTTCATTCTGTTACCATTTCTCTCTTTGATCATCTCCACCTCCTTAGCACAAACCTCATTCAGACCAAAAGCACTAGTTCTCCCCATAACCAGAGACACTTCAGCCTCAACACCACAATACACAACTCAAATCAAACAAAGAACACCACTTGTACCAATCAACCTAACCATTGATCTTGGTGGTGGCTATTTTTGGGTGAACTGTGACAAGAGCTATGTCTCATCCACTTTAAAACCAATCCTATGTAGCTCATCTCAATGCTCACTCTTCGGTTCACATGGTTGCAGTGACAAAAAAATATGTGGCCGTTCACCTTACAACACTGTAACAGGTGTGTCCACATCTGGTGACATTCAGTCAGATGTTGTTTCAGTTCAATCCACAAATGGAAACTATTCTGGTAGATTTGTTTCTGTTCCTAACTTTCTTTTTATTTGTGGTTCAAGTGTTGTACAAAATGGTCTTGCTAAGGGTGTCAAAGGTATGGCTGGTCTTGGAAGGACTAAAGTGTCACTTCCTTCACAATTTTCATCAGCTTTTAGTTTCAAGAATAAATTTGCAATTTGTTTAGGTACTCAAGATGGTGTACTTTTCTTTGGTGATGGACCTTATCTATTGAACACTGATGAATCTAAAAATCTTATTTTCACACCTCTTATTACAAACCCTGTTAGCACTGCGCCAAGTTCTTTCTTAGGTGAAAAATCAGATGAGTATTTCATTGGTGTGAAATCTATTAGAGTTTCTGGTAAAAATGTAAAGTTGAACACAACCCTTTTATCTATAGACCAAAATGGATTTGGTGGAACCAAAATTAGCACCGTTAATCCTTACACAATAATGGAGTCTTCAATTTATAAAGCAGTTGCTGATGCTTTTGTGAAAGCATTAAATGTTTCTACTGTTGAACCTGTAGCACCATTTGGAACATGTTTTGCAAGTCAAAGCATTAGTTCTTCAAGAATGGGACCAGATGTTCCTTCCATTGATCTTGTGTTGCAGAATGAGAATGTGGTTTGGAATATTATTGGAGCTAATGCAATGGTTCGTATTAATGATAAGGATGTGATTTGTTTGGGTTTTGTGGATGCTGGTTCTGATTTTGCAAAAACTTCTCAAGTTGGTTTTGTGGCTGGTGGTTCTAAACCAATGACTTCAATCACTATTGGTGCACATCAATTGGAGAATAATTTGTTGCAATTTGATTTGGCTACTTCAAGGCTTGGTTTTAGGTCACTCTTCTTGGAGCATGATAATTGTGCAAACTTTAATTTTACCTCATCTGTTTAG
Protein sequence

>MS.gene52937.t1

MASSVKLFILLPFLSLIISTSLAQTSFRPKALVLPITRDTSASTPQYTTQIKQRTPLVPINLTIDLGGGYFWVNCDKSYVSSTLKPILCSSSQCSLFGSHGCSDKKICGRSPYNTVTGVSTSGDIQSDVVSVQSTNGNYSGRFVSVPNFLFICGSSVVQNGLAKGVKGMAGLGRTKVSLPSQFSSAFSFKNKFAICLGTQDGVLFFGDGPYLLNTDESKNLIFTPLITNPVSTAPSSFLGEKSDEYFIGVKSIRVSGKNVKLNTTLLSIDQNGFGGTKISTVNPYTIMESSIYKAVADAFVKALNVSTVEPVAPFGTCFASQSISSSRMGPDVPSIDLVLQNENVVWNIIGANAMVRINDKDVICLGFVDAGSDFAKTSQVGFVAGGSKPMTSITIGAHQLENNLLQFDLATSRLGFRSLFLEHDNCANFNFTSSV