AlfalfaGEDB | MS.gene52937

M. sativa cultivar XinJiangDaYe / MS.gene52937

KEGG: -
GO: -
PFAM: PF14541.9 PF14543.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52937.t1	XP_003591797.1	96.8	436	14	0	1	436	1	436	1.80E-236	828.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52937.t1	Q9FSH9	35.1	441	214	14	25	429	41	445	9.9e-58	225.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52937.t1	G7I467	96.8	436	14	0	1	436	1	436	1.3e-236	828.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049573	MS.gene52937	0.861729	8.36E-64	-1.69E-46
MS.gene050381	MS.gene52937	0.808395	3.16E-50	-1.69E-46
MS.gene05141	MS.gene52937	0.851689	7.54E-61	-1.69E-46
MS.gene05142	MS.gene52937	0.87294	2.16E-67	-1.69E-46
MS.gene051946	MS.gene52937	0.888231	7.09E-73	-1.69E-46
MS.gene053549	MS.gene52937	0.819633	1.05E-52	-1.69E-46
MS.gene056310	MS.gene52937	0.825848	3.75E-54	-1.69E-46
MS.gene056311	MS.gene52937	0.82768	1.37E-54	-1.69E-46
MS.gene056313	MS.gene52937	0.810852	9.38E-51	-1.69E-46
MS.gene057014	MS.gene52937	0.875944	2.07E-68	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52937.t1	MTR_1g093100	96.789	436	14	0	1	436	1	436	0.0	853
MS.gene52937.t1	MTR_1g072420	53.333	450	174	8	3	435	4	434	3.53e-155	446
MS.gene52937.t1	MTR_2g022450	50.998	451	180	9	1	435	4	429	1.24e-143	417
MS.gene52937.t1	MTR_1g072450	51.345	446	178	11	8	435	9	433	6.85e-143	415
MS.gene52937.t1	MTR_1g072380	50.679	442	174	9	20	435	27	450	2.27e-140	409
MS.gene52937.t1	MTR_4g117090	44.394	437	191	14	28	430	33	451	6.43e-100	306
MS.gene52937.t1	MTR_2g022460	38.717	421	206	11	31	434	26	411	4.03e-79	251
MS.gene52937.t1	MTR_2g022320	40.308	454	209	14	1	429	1	417	1.40e-76	244
MS.gene52937.t1	MTR_2g022430	38.901	455	216	17	1	428	1	420	5.29e-74	238
MS.gene52937.t1	MTR_2g022370	37.613	444	220	15	13	431	8	419	1.87e-72	234

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52937.t1	AT1G03220	51.106	452	184	10	1	435	1	432	2.81e-141	411
MS.gene52937.t1	AT1G03230	50.233	430	178	9	23	435	23	433	1.66e-135	396
MS.gene52937.t1	AT5G19120	34.180	433	211	13	1	417	1	375	4.65e-55	187
MS.gene52937.t1	AT5G19110	31.944	432	245	13	10	430	8	401	3.68e-52	180
MS.gene52937.t1	AT5G19110	31.944	432	245	13	10	430	44	437	7.90e-52	181
MS.gene52937.t1	AT5G48430	29.204	452	250	18	1	431	1	403	5.13e-42	153
MS.gene52937.t1	AT5G19100	33.148	359	176	13	64	410	59	365	1.54e-41	152
MS.gene52937.t1	AT3G52500	24.416	471	247	23	12	417	36	462	1.00e-15	79.3
MS.gene52937.t1	AT3G25700	25.240	313	186	12	35	318	72	365	5.00e-15	77.4
MS.gene52937.t1	AT1G09750	25.749	334	210	9	28	346	85	395	1.05e-14	76.3

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Find 79 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTGATGAAAATTGTGA+AGG	0.597985	1.1:+57026211	None:intergenic
AAATCAGATGAGTATTTCAT+TGG	0.428391	1.1:-57026025	MS.gene52937:CDS
AACCTAACCATTGATCTTGG+TGG	0.541576	1.1:-57026568	MS.gene52937:CDS
AACTTGGCGCAGTGCTAACA+GGG	0.570600	1.1:+57026062	None:intergenic
AAGCATTAGTTCTTCAAGAA+TGG	0.377077	1.1:-57025783	MS.gene52937:CDS
AAGGGTGTCAAAGGTATGGC+TGG	0.510377	1.1:-57026259	MS.gene52937:CDS
AAGGTATGGCTGGTCTTGGA+AGG	0.572528	1.1:-57026249	MS.gene52937:CDS
AATAAATTTGCAATTTGTTT+AGG	0.256299	1.1:-57026178	MS.gene52937:CDS
AATGGTTCGTATTAATGATA+AGG	0.488541	1.1:-57025687	MS.gene52937:CDS
AATGTGGTTTGGAATATTAT+TGG	0.355763	1.1:-57025719	MS.gene52937:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGCTGATGAAAATTGTGA+AGG	+	chr1.1:57026000-57026019	None:intergenic	30.0%
ATTTGTTTAGGTACTCAAGA+TGG	-	chr1.1:57026042-57026061	MS.gene52937:CDS	30.0%
CGTTAATCCTTACACAATAA+TGG	-	chr1.1:57026302-57026321	MS.gene52937:CDS	30.0%
GTGAAATCTATTAGAGTTTC+TGG	-	chr1.1:57026207-57026226	MS.gene52937:CDS	30.0%
TATTATTGGAGCTAATGCAA+TGG	-	chr1.1:57026503-57026522	MS.gene52937:CDS	30.0%
TCATCAGTGTTCAATAGATA+AGG	+	chr1.1:57026090-57026109	None:intergenic	30.0%
TGCAGTGACAAAAAAATATG+TGG	-	chr1.1:57025763-57025782	MS.gene52937:CDS	30.0%
TTTGCAAAAACTTCTCAAGT+TGG	-	chr1.1:57026582-57026601	MS.gene52937:CDS	30.0%
ACCAGAATAGTTTCCATTTG+TGG	+	chr1.1:57025863-57025882	None:intergenic	35.0%
ATCAACCTAACCATTGATCT+TGG	-	chr1.1:57025637-57025656	MS.gene52937:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	57025460	57026770	57025460	ID=MS.gene52937
chr1.1	mRNA	57025460	57026770	57025460	ID=MS.gene52937.t1;Parent=MS.gene52937
chr1.1	exon	57025460	57026770	57025460	ID=MS.gene52937.t1.exon1;Parent=MS.gene52937.t1
chr1.1	CDS	57025460	57026770	57025460	ID=cds.MS.gene52937.t1;Parent=MS.gene52937.t1

Gene Sequence

>MS.gene52937

ATGGCTTCCTCAGTTAAACTCTTCATTCTGTTACCATTTCTCTCTTTGATCATCTCCACCTCCTTAGCACAAACCTCATTCAGACCAAAAGCACTAGTTCTCCCCATAACCAGAGACACTTCAGCCTCAACACCACAATACACAACTCAAATCAAACAAAGAACACCACTTGTACCAATCAACCTAACCATTGATCTTGGTGGTGGCTATTTTTGGGTGAACTGTGACAAGAGCTATGTCTCATCCACTTTAAAACCAATCCTATGTAGCTCATCTCAATGCTCACTCTTCGGTTCACATGGTTGCAGTGACAAAAAAATATGTGGCCGTTCACCTTACAACACTGTAACAGGTGTGTCCACATCTGGTGACATTCAGTCAGATGTTGTTTCAGTTCAATCCACAAATGGAAACTATTCTGGTAGATTTGTTTCTGTTCCTAACTTTCTTTTTATTTGTGGTTCAAGTGTTGTACAAAATGGTCTTGCTAAGGGTGTCAAAGGTATGGCTGGTCTTGGAAGGACTAAAGTGTCACTTCCTTCACAATTTTCATCAGCTTTTAGTTTCAAGAATAAATTTGCAATTTGTTTAGGTACTCAAGATGGTGTACTTTTCTTTGGTGATGGACCTTATCTATTGAACACTGATGAATCTAAAAATCTTATTTTCACACCTCTTATTACAAACCCTGTTAGCACTGCGCCAAGTTCTTTCTTAGGTGAAAAATCAGATGAGTATTTCATTGGTGTGAAATCTATTAGAGTTTCTGGTAAAAATGTAAAGTTGAACACAACCCTTTTATCTATAGACCAAAATGGATTTGGTGGAACCAAAATTAGCACCGTTAATCCTTACACAATAATGGAGTCTTCAATTTATAAAGCAGTTGCTGATGCTTTTGTGAAAGCATTAAATGTTTCTACTGTTGAACCTGTAGCACCATTTGGAACATGTTTTGCAAGTCAAAGCATTAGTTCTTCAAGAATGGGACCAGATGTTCCTTCCATTGATCTTGTGTTGCAGAATGAGAATGTGGTTTGGAATATTATTGGAGCTAATGCAATGGTTCGTATTAATGATAAGGATGTGATTTGTTTGGGTTTTGTGGATGCTGGTTCTGATTTTGCAAAAACTTCTCAAGTTGGTTTTGTGGCTGGTGGTTCTAAACCAATGACTTCAATCACTATTGGTGCACATCAATTGGAGAATAATTTGTTGCAATTTGATTTGGCTACTTCAAGGCTTGGTTTTAGGTCACTCTTCTTGGAGCATGATAATTGTGCAAACTTTAATTTTACCTCATCTGTTTAG

Protein sequence

>MS.gene52937.t1

MASSVKLFILLPFLSLIISTSLAQTSFRPKALVLPITRDTSASTPQYTTQIKQRTPLVPINLTIDLGGGYFWVNCDKSYVSSTLKPILCSSSQCSLFGSHGCSDKKICGRSPYNTVTGVSTSGDIQSDVVSVQSTNGNYSGRFVSVPNFLFICGSSVVQNGLAKGVKGMAGLGRTKVSLPSQFSSAFSFKNKFAICLGTQDGVLFFGDGPYLLNTDESKNLIFTPLITNPVSTAPSSFLGEKSDEYFIGVKSIRVSGKNVKLNTTLLSIDQNGFGGTKISTVNPYTIMESSIYKAVADAFVKALNVSTVEPVAPFGTCFASQSISSSRMGPDVPSIDLVLQNENVVWNIIGANAMVRINDKDVICLGFVDAGSDFAKTSQVGFVAGGSKPMTSITIGAHQLENNLLQFDLATSRLGFRSLFLEHDNCANFNFTSSV