Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93015.t1 | XP_013446279.1 | 99.4 | 312 | 2 | 0 | 1 | 312 | 1 | 312 | 1.70E-175 | 625.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93015.t1 | P52581 | 77.9 | 312 | 69 | 0 | 1 | 312 | 1 | 312 | 6.7e-141 | 501.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93015.t1 | A0A072TT01 | 99.4 | 312 | 2 | 0 | 1 | 312 | 1 | 312 | 1.2e-175 | 625.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050363 | MS.gene93015 | 0.804821 | 1.80E-49 | -1.69E-46 |
| MS.gene050883 | MS.gene93015 | 0.897425 | 1.42E-76 | -1.69E-46 |
| MS.gene051127 | MS.gene93015 | 0.801386 | 9.23E-49 | -1.69E-46 |
| MS.gene051410 | MS.gene93015 | 0.803874 | 2.83E-49 | -1.69E-46 |
| MS.gene05142 | MS.gene93015 | 0.835625 | 1.51E-56 | -1.69E-46 |
| MS.gene051946 | MS.gene93015 | 0.815436 | 9.25E-52 | -1.69E-46 |
| MS.gene052053 | MS.gene93015 | 0.826446 | 2.70E-54 | -1.69E-46 |
| MS.gene053508 | MS.gene93015 | 0.81177 | 5.93E-51 | -1.69E-46 |
| MS.gene053549 | MS.gene93015 | 0.856154 | 3.90E-62 | -1.69E-46 |
| MS.gene053826 | MS.gene93015 | 0.855955 | 4.46E-62 | -1.69E-46 |
| MS.gene055549 | MS.gene93015 | 0.836175 | 1.09E-56 | -1.69E-46 |
| MS.gene055550 | MS.gene93015 | 0.831316 | 1.79E-55 | -1.69E-46 |
| MS.gene055551 | MS.gene93015 | 0.84144 | 4.75E-58 | -1.69E-46 |
| MS.gene056310 | MS.gene93015 | 0.829849 | 4.09E-55 | -1.69E-46 |
| MS.gene056311 | MS.gene93015 | 0.866102 | 3.64E-65 | -1.69E-46 |
| MS.gene056530 | MS.gene93015 | 0.915113 | 8.66E-85 | -1.69E-46 |
| MS.gene057014 | MS.gene93015 | 0.813493 | 2.49E-51 | -1.69E-46 |
| MS.gene057499 | MS.gene93015 | 0.825745 | 3.96E-54 | -1.69E-46 |
| MS.gene058111 | MS.gene93015 | 0.843338 | 1.49E-58 | -1.69E-46 |
| MS.gene058493 | MS.gene93015 | 0.830526 | 2.80E-55 | -1.69E-46 |
| MS.gene058494 | MS.gene93015 | 0.851098 | 1.11E-60 | -1.69E-46 |
| MS.gene058496 | MS.gene93015 | 0.801561 | 8.50E-49 | -1.69E-46 |
| MS.gene058628 | MS.gene93015 | 0.835188 | 1.94E-56 | -1.69E-46 |
| MS.gene058629 | MS.gene93015 | 0.818548 | 1.85E-52 | -1.69E-46 |
| MS.gene058630 | MS.gene93015 | 0.838643 | 2.55E-57 | -1.69E-46 |
| MS.gene05884 | MS.gene93015 | 0.827641 | 1.40E-54 | -1.69E-46 |
| MS.gene059052 | MS.gene93015 | 0.82922 | 5.82E-55 | -1.69E-46 |
| MS.gene059514 | MS.gene93015 | 0.807591 | 4.69E-50 | -1.69E-46 |
| MS.gene059547 | MS.gene93015 | 0.809469 | 1.86E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93015.t1 | MTR_8g071130 | 99.359 | 312 | 2 | 0 | 1 | 312 | 1 | 312 | 0.0 | 633 |
| MS.gene93015.t1 | MTR_5g027240 | 75.241 | 311 | 76 | 1 | 1 | 311 | 1 | 310 | 2.85e-179 | 497 |
| MS.gene93015.t1 | MTR_5g027290 | 75.884 | 311 | 74 | 1 | 1 | 311 | 1 | 310 | 3.51e-179 | 497 |
| MS.gene93015.t1 | MTR_5g020740 | 48.726 | 314 | 150 | 5 | 2 | 312 | 4 | 309 | 8.12e-96 | 286 |
| MS.gene93015.t1 | MTR_3g116840 | 48.710 | 310 | 152 | 4 | 4 | 312 | 9 | 312 | 1.43e-95 | 285 |
| MS.gene93015.t1 | MTR_3g111990 | 47.588 | 311 | 156 | 3 | 3 | 312 | 4 | 308 | 2.82e-94 | 282 |
| MS.gene93015.t1 | MTR_3g111980 | 46.178 | 314 | 160 | 4 | 2 | 312 | 3 | 310 | 1.17e-92 | 278 |
| MS.gene93015.t1 | MTR_4g070370 | 43.226 | 310 | 169 | 3 | 1 | 309 | 5 | 308 | 1.48e-82 | 253 |
| MS.gene93015.t1 | MTR_4g070340 | 42.671 | 307 | 169 | 3 | 4 | 309 | 7 | 307 | 1.23e-78 | 243 |
| MS.gene93015.t1 | MTR_5g020760 | 40.432 | 324 | 170 | 8 | 3 | 312 | 4 | 318 | 1.47e-73 | 229 |
| MS.gene93015.t1 | MTR_5g020800 | 40.432 | 324 | 170 | 8 | 3 | 312 | 4 | 318 | 1.51e-73 | 229 |
| MS.gene93015.t1 | MTR_4g070340 | 41.368 | 307 | 168 | 4 | 4 | 309 | 7 | 302 | 3.31e-73 | 228 |
| MS.gene93015.t1 | MTR_4g070360 | 39.677 | 310 | 180 | 3 | 1 | 308 | 1 | 305 | 6.46e-73 | 227 |
| MS.gene93015.t1 | MTR_3g008100 | 42.020 | 307 | 167 | 6 | 3 | 308 | 5 | 301 | 7.15e-71 | 222 |
| MS.gene93015.t1 | MTR_3g008100 | 41.694 | 307 | 161 | 6 | 3 | 308 | 5 | 294 | 9.54e-69 | 216 |
| MS.gene93015.t1 | MTR_5g020760 | 42.537 | 268 | 137 | 5 | 3 | 259 | 4 | 265 | 2.45e-68 | 214 |
| MS.gene93015.t1 | MTR_3g008140 | 40.584 | 308 | 171 | 7 | 2 | 308 | 4 | 300 | 1.32e-66 | 211 |
| MS.gene93015.t1 | MTR_4g070340 | 44.715 | 246 | 129 | 3 | 65 | 309 | 19 | 258 | 4.61e-65 | 206 |
| MS.gene93015.t1 | MTR_3g007970 | 38.762 | 307 | 177 | 6 | 3 | 308 | 5 | 301 | 9.41e-65 | 206 |
| MS.gene93015.t1 | MTR_1g093720 | 35.127 | 316 | 193 | 6 | 1 | 312 | 11 | 318 | 1.52e-56 | 186 |
| MS.gene93015.t1 | MTR_3g008100 | 44.311 | 167 | 85 | 4 | 3 | 168 | 5 | 164 | 5.72e-36 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93015.t1 | AT1G32100 | 65.916 | 311 | 105 | 1 | 2 | 312 | 8 | 317 | 7.67e-156 | 438 |
| MS.gene93015.t1 | AT4G13660 | 64.309 | 311 | 110 | 1 | 2 | 312 | 8 | 317 | 1.41e-152 | 430 |
| MS.gene93015.t1 | AT4G13660 | 64.309 | 311 | 110 | 1 | 2 | 312 | 8 | 317 | 1.41e-152 | 430 |
| MS.gene93015.t1 | AT1G75280 | 46.326 | 313 | 158 | 5 | 2 | 311 | 4 | 309 | 2.67e-89 | 269 |
| MS.gene93015.t1 | AT1G75290 | 45.048 | 313 | 163 | 4 | 2 | 311 | 4 | 310 | 2.14e-88 | 267 |
| MS.gene93015.t1 | AT4G39230 | 45.687 | 313 | 161 | 4 | 2 | 312 | 3 | 308 | 3.09e-88 | 266 |
| MS.gene93015.t1 | AT1G75290 | 45.048 | 313 | 163 | 4 | 2 | 311 | 31 | 337 | 8.57e-88 | 266 |
| MS.gene93015.t1 | AT1G75300 | 45.370 | 324 | 151 | 5 | 2 | 308 | 4 | 318 | 2.10e-82 | 252 |
| MS.gene93015.t1 | AT1G19540 | 44.551 | 312 | 166 | 4 | 4 | 312 | 3 | 310 | 1.41e-80 | 247 |
| MS.gene93015.t1 | AT1G19540 | 46.899 | 258 | 131 | 3 | 4 | 259 | 3 | 256 | 3.04e-70 | 219 |
| MS.gene93015.t1 | AT4G34540 | 39.935 | 308 | 173 | 4 | 2 | 308 | 6 | 302 | 4.59e-69 | 217 |
Find 74 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTTCTTGCCTTCGGAATT+TGG | 0.140897 | 8.2:+32155545 | MS.gene93015:CDS |
| AAGGAGAGCTTATTGGAATT+TGG | 0.172480 | 8.2:+32156036 | MS.gene93015:CDS |
| GGAATTTGGGAGAAACTTAT+TGG | 0.188551 | 8.2:+32156050 | MS.gene93015:CDS |
| TGTTTGACAAACTTTGAAAT+AGG | 0.209168 | 8.2:+32156329 | MS.gene93015:CDS |
| TCATCAAATGTTACCCTTCC+TGG | 0.228852 | 8.2:-32155602 | None:intergenic |
| CTCTCCCAAGGAGAGCTTAT+TGG | 0.238246 | 8.2:+32156029 | MS.gene93015:CDS |
| AGAGACAAGGTTCATCTCTT+TGG | 0.275371 | 8.2:+32155746 | MS.gene93015:CDS |
| GTTTGACAAACTTTGAAATA+GGG | 0.285880 | 8.2:+32156330 | MS.gene93015:CDS |
| AATATTACCAGCTTCTTTGA+TGG | 0.297662 | 8.2:-32154974 | None:intergenic |
| CAAAGAAGCTGGTAATATTA+AGG | 0.300858 | 8.2:+32154978 | MS.gene93015:CDS |
| AATGCATGTCCCATTCTTGC+TGG | 0.305536 | 8.2:-32155575 | None:intergenic |
| AGGAGAGCTTATTGGAATTT+GGG | 0.315376 | 8.2:+32156037 | MS.gene93015:CDS |
| CTATATCTGGTGTTCATATT+AGG | 0.315932 | 8.2:+32154914 | MS.gene93015:CDS |
| CTCTTTGCTGGATACTTTGC+TGG | 0.318255 | 8.2:+32155689 | MS.gene93015:CDS |
| ATCTCTGCTAACCTCTTTGC+TGG | 0.361971 | 8.2:+32155677 | MS.gene93015:CDS |
| GGTAACATTTGATGACAAAA+TGG | 0.366837 | 8.2:+32155610 | MS.gene93015:CDS |
| TGCTGGAAGCCTCTCTCAGA+TGG | 0.390000 | 8.2:+32155706 | MS.gene93015:CDS |
| ACACTAGCGTTTCTTGCCTT+CGG | 0.397251 | 8.2:+32155538 | MS.gene93015:intron |
| TTTGGAGATGGAAAACATAA+AGG | 0.410931 | 8.2:+32155764 | MS.gene93015:CDS |
| TATAAACTTCAAGTAGCAAT+TGG | 0.419438 | 8.2:+32156278 | MS.gene93015:CDS |
| GTTCTAGTAGTGGGAGGAAC+AGG | 0.429745 | 8.2:+32154685 | MS.gene93015:CDS |
| TGTTACCTTTCAATGTTGTA+AGG | 0.444547 | 8.2:-32156112 | None:intergenic |
| TGGCCTAGACCCAGCAAGAA+TGG | 0.445117 | 8.2:+32155565 | MS.gene93015:CDS |
| CATATTAGGAGTCATAGTAT+TGG | 0.455402 | 8.2:+32154928 | MS.gene93015:CDS |
| AGCAAGAATGGGACATGCAT+TGG | 0.455560 | 8.2:+32155577 | MS.gene93015:CDS |
| GTCCCATTCTTGCTGGGTCT+AGG | 0.460549 | 8.2:-32155568 | None:intergenic |
| AACTTTGAAATAGGGGAAGA+TGG | 0.469119 | 8.2:+32156338 | MS.gene93015:CDS |
| AAATTCCAATAAGCTCTCCT+TGG | 0.474182 | 8.2:-32156034 | None:intergenic |
| ATGCATGTCCCATTCTTGCT+GGG | 0.478003 | 8.2:-32155574 | None:intergenic |
| ATGCGTGTGTAATTCACCTC+AGG | 0.480231 | 8.2:-32156383 | None:intergenic |
| GTTGTCATCAGTGCTATATC+TGG | 0.487092 | 8.2:+32154901 | MS.gene93015:CDS |
| TTCAAATTGAGAAGATTCAA+AGG | 0.491021 | 8.2:+32154788 | MS.gene93015:CDS |
| TCAATTTGAAGTCCCAACTC+TGG | 0.493933 | 8.2:-32154775 | None:intergenic |
| TTGATGACAAAATGGCTGTA+AGG | 0.494907 | 8.2:+32155618 | MS.gene93015:CDS |
| ATGGGACATGCATTGGAGCC+AGG | 0.496170 | 8.2:+32155584 | MS.gene93015:CDS |
| GCTGGAAGCCTCTCTCAGAT+GGG | 0.496185 | 8.2:+32155707 | MS.gene93015:CDS |
| CTTCTTTCATTCAAGAAACA+AGG | 0.497102 | 8.2:+32154811 | MS.gene93015:CDS |
| GTGGGAGGAACAGGATACAT+AGG | 0.497938 | 8.2:+32154694 | MS.gene93015:CDS |
| GGCCTAGACCCAGCAAGAAT+GGG | 0.499805 | 8.2:+32155566 | MS.gene93015:CDS |
| AAGGTTCATCTCTTTGGAGA+TGG | 0.505407 | 8.2:+32155752 | MS.gene93015:CDS |
| GAAACTTATTGGAAAAGAGC+TGG | 0.507171 | 8.2:+32156061 | MS.gene93015:CDS |
| TTTGACAAACTTTGAAATAG+GGG | 0.526655 | 8.2:+32156331 | MS.gene93015:CDS |
| TGTGATTCAAAGGCCAGAGT+TGG | 0.529026 | 8.2:+32154762 | MS.gene93015:CDS |
| AAGAGCAAGGTTCTAGTAGT+GGG | 0.529398 | 8.2:+32154676 | MS.gene93015:CDS |
| GTGATTCAAAGGCCAGAGTT+GGG | 0.530457 | 8.2:+32154763 | MS.gene93015:CDS |
| GGCTTCCTTACAACATTGAA+AGG | 0.541729 | 8.2:+32156107 | MS.gene93015:CDS |
| ATGAAACCTATGTGATTCAA+AGG | 0.548412 | 8.2:+32154752 | MS.gene93015:CDS |
| AAGAGATGAACCTTGTCTCT+AGG | 0.549631 | 8.2:-32155743 | None:intergenic |
| ATTCACCTCAGGGTAAAGCT+TGG | 0.558374 | 8.2:-32156372 | None:intergenic |
| AATTCCAATAAGCTCTCCTT+GGG | 0.559132 | 8.2:-32156033 | None:intergenic |
| AAAGAGCAAGGTTCTAGTAG+TGG | 0.560042 | 8.2:+32154675 | MS.gene93015:CDS |
| GTTGATGCCATCAAAGAAGC+TGG | 0.562038 | 8.2:+32154967 | MS.gene93015:CDS |
| TTAGCAGAGATGTAAGTGAA+AGG | 0.563391 | 8.2:-32155665 | None:intergenic |
| GACATGCATTGGAGCCAGGA+AGG | 0.564748 | 8.2:+32155588 | MS.gene93015:CDS |
| TCTTGTTGATGCTATCAAGA+AGG | 0.568801 | 8.2:+32154873 | MS.gene93015:CDS |
| AATGTTGTAAGGAAGCCCTC+AGG | 0.573144 | 8.2:-32156101 | None:intergenic |
| AGAGAAAATGGAAAAGAGCA+AGG | 0.586777 | 8.2:+32154663 | None:intergenic |
| TGAGGTGAATTACACACGCA+TGG | 0.597960 | 8.2:+32156385 | MS.gene93015:CDS |
| CTCTGGCCTTTGAATCACAT+AGG | 0.599139 | 8.2:-32154758 | None:intergenic |
| TGCGTGTGTAATTCACCTCA+GGG | 0.611857 | 8.2:-32156382 | None:intergenic |
| CATAGGAAGAAGAATAGTGA+AGG | 0.614022 | 8.2:+32154711 | MS.gene93015:CDS |
| ACATGCATTGGAGCCAGGAA+GGG | 0.617973 | 8.2:+32155589 | MS.gene93015:CDS |
| CAAGAAAACATTCTCTCCCA+AGG | 0.620681 | 8.2:+32156017 | MS.gene93015:CDS |
| CAGCAAAGTATCCAGCAAAG+AGG | 0.621117 | 8.2:-32155688 | None:intergenic |
| CAAAAGAACCCATCTGAGAG+AGG | 0.622907 | 8.2:-32155715 | None:intergenic |
| ACAAGGTGCTCATATTGTTG+AGG | 0.645307 | 8.2:+32154828 | MS.gene93015:CDS |
| GGGTCTAGGCCAAATTCCGA+AGG | 0.645748 | 8.2:-32155554 | None:intergenic |
| GTGAAGGCAAGTTTAGAACA+AGG | 0.646091 | 8.2:+32154727 | MS.gene93015:CDS |
| AGCAAGGTTCTAGTAGTGGG+AGG | 0.646523 | 8.2:+32154679 | MS.gene93015:CDS |
| AGATGAACCTTGTCTCTAGG+AGG | 0.656944 | 8.2:-32155740 | None:intergenic |
| GTTGTAAGGAAGCCCTCAGG+AGG | 0.661067 | 8.2:-32156098 | None:intergenic |
| GAAGACATATATTCCTCCTG+AGG | 0.665530 | 8.2:+32156085 | MS.gene93015:CDS |
| AAGACATATATTCCTCCTGA+GGG | 0.669732 | 8.2:+32156086 | MS.gene93015:CDS |
| AGCATCCAAGCTTTACCCTG+AGG | 0.701976 | 8.2:+32156367 | MS.gene93015:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGTTTAATGTTAAAAATT+TGG | + | chr8.2:32155375-32155394 | MS.gene93015:intron | 10.0% |
| !! | TTGTTTAATGTTAAAAATTT+GGG | + | chr8.2:32155376-32155395 | MS.gene93015:intron | 10.0% |
| !! | AAAGATTAAGAAATTAAGAT+AGG | - | chr8.2:32155027-32155046 | None:intergenic | 15.0% |
| !! | TATTAAGGTAATTAATTTCT+TGG | + | chr8.2:32154993-32155012 | MS.gene93015:intron | 15.0% |
| !! | TTAATTTCCTAATACATATA+AGG | - | chr8.2:32156189-32156208 | None:intergenic | 15.0% |
| !! | ATTAGATATTAGATATGCAA+CGG | - | chr8.2:32155419-32155438 | None:intergenic | 20.0% |
| !! | ATTTGACATAATTACATACA+TGG | + | chr8.2:32155477-32155496 | MS.gene93015:intron | 20.0% |
| !! | GTATATAATTCATTTGAGAA+AGG | + | chr8.2:32155188-32155207 | MS.gene93015:intron | 20.0% |
| !! | TAAGTGAAAGACATTTATAT+TGG | + | chr8.2:32155344-32155363 | MS.gene93015:intron | 20.0% |
| !! | TGTATGTAATTATGTCAAAT+TGG | - | chr8.2:32155477-32155496 | None:intergenic | 20.0% |
| !! | TTAATGACAATATATAGTTC+AGG | - | chr8.2:32155238-32155257 | None:intergenic | 20.0% |
| !!! | AAGGTATAATGTTTTGTTTA+AGG | - | chr8.2:32155991-32156010 | None:intergenic | 20.0% |
| ! | TATAAACTTCAAGTAGCAAT+TGG | + | chr8.2:32156278-32156297 | MS.gene93015:CDS | 25.0% |
| ! | TTATGTCAAATTGGAAAAAG+AGG | - | chr8.2:32155468-32155487 | None:intergenic | 25.0% |
| ! | TTCAAATTGAGAAGATTCAA+AGG | + | chr8.2:32154788-32154807 | MS.gene93015:CDS | 25.0% |
| !! | TTCTATCATATTTTCTACGA+GGG | + | chr8.2:32156305-32156324 | MS.gene93015:CDS | 25.0% |
| !!! | AAAGTTTGTTGAACTTGTAA+AGG | - | chr8.2:32155792-32155811 | None:intergenic | 25.0% |
| !!! | GTTTGACAAACTTTGAAATA+GGG | + | chr8.2:32156330-32156349 | MS.gene93015:CDS | 25.0% |
| !!! | TGTTTGACAAACTTTGAAAT+AGG | + | chr8.2:32156329-32156348 | MS.gene93015:CDS | 25.0% |
| !!! | TTTATGTGAAATTGATTTGC+AGG | + | chr8.2:32156248-32156267 | MS.gene93015:intron | 25.0% |
| !!! | TTTGACAAACTTTGAAATAG+GGG | + | chr8.2:32156331-32156350 | MS.gene93015:CDS | 25.0% |
| AAGCTAACCAATCATGTAAT+GGG | - | chr8.2:32155445-32155464 | None:intergenic | 30.0% | |
| AATATTACCAGCTTCTTTGA+TGG | - | chr8.2:32154977-32154996 | None:intergenic | 30.0% | |
| ATGAAACCTATGTGATTCAA+AGG | + | chr8.2:32154752-32154771 | MS.gene93015:CDS | 30.0% | |
| CAAAGAAGCTGGTAATATTA+AGG | + | chr8.2:32154978-32154997 | MS.gene93015:CDS | 30.0% | |
| CATATTAGGAGTCATAGTAT+TGG | + | chr8.2:32154928-32154947 | MS.gene93015:CDS | 30.0% | |
| CTATATCTGGTGTTCATATT+AGG | + | chr8.2:32154914-32154933 | MS.gene93015:CDS | 30.0% | |
| CTTCTTTCATTCAAGAAACA+AGG | + | chr8.2:32154811-32154830 | MS.gene93015:CDS | 30.0% | |
| TATACAGATTGTGATCGATT+TGG | - | chr8.2:32155173-32155192 | None:intergenic | 30.0% | |
| TCATGCACCTTATATGTATT+AGG | + | chr8.2:32156179-32156198 | MS.gene93015:intron | 30.0% | |
| TGTATGTTCGTATTCGAATT+TGG | + | chr8.2:32155830-32155849 | MS.gene93015:intron | 30.0% | |
| TGTTACCTTTCAATGTTGTA+AGG | - | chr8.2:32156115-32156134 | None:intergenic | 30.0% | |
| TTTGGAGATGGAAAACATAA+AGG | + | chr8.2:32155764-32155783 | MS.gene93015:CDS | 30.0% | |
| ! | CTTCTATCATATTTTCTACG+AGG | + | chr8.2:32156304-32156323 | MS.gene93015:CDS | 30.0% |
| ! | GGTAACATTTGATGACAAAA+TGG | + | chr8.2:32155610-32155629 | MS.gene93015:CDS | 30.0% |
| !!! | AATGTTTTGTTTAAGGTTCG+AGG | - | chr8.2:32155984-32156003 | None:intergenic | 30.0% |
| AAATTCCAATAAGCTCTCCT+TGG | - | chr8.2:32156037-32156056 | None:intergenic | 35.0% | |
| AAGACATATATTCCTCCTGA+GGG | + | chr8.2:32156086-32156105 | MS.gene93015:CDS | 35.0% | |
| AAGGAGAGCTTATTGGAATT+TGG | + | chr8.2:32156036-32156055 | MS.gene93015:CDS | 35.0% | |
| AATTCCAATAAGCTCTCCTT+GGG | - | chr8.2:32156036-32156055 | None:intergenic | 35.0% | |
| AGCTAACCAATCATGTAATG+GGG | - | chr8.2:32155444-32155463 | None:intergenic | 35.0% | |
| AGGAGAGCTTATTGGAATTT+GGG | + | chr8.2:32156037-32156056 | MS.gene93015:CDS | 35.0% | |
| ATGCAACGGTATTCACATAT+TGG | - | chr8.2:32155405-32155424 | None:intergenic | 35.0% | |
| CATAGGAAGAAGAATAGTGA+AGG | + | chr8.2:32154711-32154730 | MS.gene93015:CDS | 35.0% | |
| GAAACTTATTGGAAAAGAGC+TGG | + | chr8.2:32156061-32156080 | MS.gene93015:CDS | 35.0% | |
| GAAGCTAACCAATCATGTAA+TGG | - | chr8.2:32155446-32155465 | None:intergenic | 35.0% | |
| GGAATTTGGGAGAAACTTAT+TGG | + | chr8.2:32156050-32156069 | MS.gene93015:CDS | 35.0% | |
| TAATGACCCCATTACATGAT+TGG | + | chr8.2:32155435-32155454 | MS.gene93015:intron | 35.0% | |
| TCTTGTTGATGCTATCAAGA+AGG | + | chr8.2:32154873-32154892 | MS.gene93015:CDS | 35.0% | |
| TGCAACGGTATTCACATATT+GGG | - | chr8.2:32155404-32155423 | None:intergenic | 35.0% | |
| TTAGCAGAGATGTAAGTGAA+AGG | - | chr8.2:32155668-32155687 | None:intergenic | 35.0% | |
| ! | GAATGTTTTCTTGTGGTCTA+AGG | - | chr8.2:32156010-32156029 | None:intergenic | 35.0% |
| ! | TTGATGACAAAATGGCTGTA+AGG | + | chr8.2:32155618-32155637 | MS.gene93015:CDS | 35.0% |
| !! | AACTTTGAAATAGGGGAAGA+TGG | + | chr8.2:32156338-32156357 | MS.gene93015:CDS | 35.0% |
| !! | GTGAAATTGATTTGCAGGAT+TGG | + | chr8.2:32156253-32156272 | MS.gene93015:intron | 35.0% |
| !! | TGTGATCGATTTGGTCTATA+TGG | - | chr8.2:32155164-32155183 | None:intergenic | 35.0% |
| AAGAGATGAACCTTGTCTCT+AGG | - | chr8.2:32155746-32155765 | None:intergenic | 40.0% | |
| AGAGACAAGGTTCATCTCTT+TGG | + | chr8.2:32155746-32155765 | MS.gene93015:CDS | 40.0% | |
| CAAGAAAACATTCTCTCCCA+AGG | + | chr8.2:32156017-32156036 | MS.gene93015:CDS | 40.0% | |
| GAAGACATATATTCCTCCTG+AGG | + | chr8.2:32156085-32156104 | MS.gene93015:CDS | 40.0% | |
| GGCTTCCTTACAACATTGAA+AGG | + | chr8.2:32156107-32156126 | MS.gene93015:CDS | 40.0% | |
| GTTGTCATCAGTGCTATATC+TGG | + | chr8.2:32154901-32154920 | MS.gene93015:CDS | 40.0% | |
| TCATCAAATGTTACCCTTCC+TGG | - | chr8.2:32155605-32155624 | None:intergenic | 40.0% | |
| ! | AAAGAGCAAGGTTCTAGTAG+TGG | + | chr8.2:32154675-32154694 | MS.gene93015:CDS | 40.0% |
| ! | AAGAGCAAGGTTCTAGTAGT+GGG | + | chr8.2:32154676-32154695 | MS.gene93015:CDS | 40.0% |
| ! | AAGGTTCATCTCTTTGGAGA+TGG | + | chr8.2:32155752-32155771 | MS.gene93015:CDS | 40.0% |
| ! | ACAAGGTGCTCATATTGTTG+AGG | + | chr8.2:32154828-32154847 | MS.gene93015:CDS | 40.0% |
| ! | GTGAAGGCAAGTTTAGAACA+AGG | + | chr8.2:32154727-32154746 | MS.gene93015:CDS | 40.0% |
| ! | TCAATTTGAAGTCCCAACTC+TGG | - | chr8.2:32154778-32154797 | None:intergenic | 40.0% |
| ! | TGGGAGAGAATGTTTTCTTG+TGG | - | chr8.2:32156017-32156036 | None:intergenic | 40.0% |
| !! | CGATTTGGTCTATATGGTTC+AGG | - | chr8.2:32155158-32155177 | None:intergenic | 40.0% |
| AATGCATGTCCCATTCTTGC+TGG | - | chr8.2:32155578-32155597 | None:intergenic | 45.0% | |
| AATGTTGTAAGGAAGCCCTC+AGG | - | chr8.2:32156104-32156123 | None:intergenic | 45.0% | |
| ACACTAGCGTTTCTTGCCTT+CGG | + | chr8.2:32155538-32155557 | MS.gene93015:intron | 45.0% | |
| AGATGAACCTTGTCTCTAGG+AGG | - | chr8.2:32155743-32155762 | None:intergenic | 45.0% | |
| AGCAAGAATGGGACATGCAT+TGG | + | chr8.2:32155577-32155596 | MS.gene93015:CDS | 45.0% | |
| ATCTCTGCTAACCTCTTTGC+TGG | + | chr8.2:32155677-32155696 | MS.gene93015:CDS | 45.0% | |
| ATGCATGTCCCATTCTTGCT+GGG | - | chr8.2:32155577-32155596 | None:intergenic | 45.0% | |
| ATGCGTGTGTAATTCACCTC+AGG | - | chr8.2:32156386-32156405 | None:intergenic | 45.0% | |
| ATTCACCTCAGGGTAAAGCT+TGG | - | chr8.2:32156375-32156394 | None:intergenic | 45.0% | |
| CAAAAGAACCCATCTGAGAG+AGG | - | chr8.2:32155718-32155737 | None:intergenic | 45.0% | |
| CGTTTCTTGCCTTCGGAATT+TGG | + | chr8.2:32155545-32155564 | MS.gene93015:CDS | 45.0% | |
| CTCTTTGCTGGATACTTTGC+TGG | + | chr8.2:32155689-32155708 | MS.gene93015:CDS | 45.0% | |
| GTGATTCAAAGGCCAGAGTT+GGG | + | chr8.2:32154763-32154782 | MS.gene93015:CDS | 45.0% | |
| GTTGATGCCATCAAAGAAGC+TGG | + | chr8.2:32154967-32154986 | MS.gene93015:CDS | 45.0% | |
| TGAGGTGAATTACACACGCA+TGG | + | chr8.2:32156385-32156404 | MS.gene93015:CDS | 45.0% | |
| TGCGTGTGTAATTCACCTCA+GGG | - | chr8.2:32156385-32156404 | None:intergenic | 45.0% | |
| TGTGATTCAAAGGCCAGAGT+TGG | + | chr8.2:32154762-32154781 | MS.gene93015:CDS | 45.0% | |
| ! | CAGCAAAGTATCCAGCAAAG+AGG | - | chr8.2:32155691-32155710 | None:intergenic | 45.0% |
| ! | CTCTGGCCTTTGAATCACAT+AGG | - | chr8.2:32154761-32154780 | None:intergenic | 45.0% |
| ! | TTTTGTGCCTCCTAGAGACA+AGG | + | chr8.2:32155733-32155752 | MS.gene93015:CDS | 45.0% |
| ACATGCATTGGAGCCAGGAA+GGG | + | chr8.2:32155589-32155608 | MS.gene93015:CDS | 50.0% | |
| AGCATCCAAGCTTTACCCTG+AGG | + | chr8.2:32156367-32156386 | MS.gene93015:CDS | 50.0% | |
| CTCTCCCAAGGAGAGCTTAT+TGG | + | chr8.2:32156029-32156048 | MS.gene93015:CDS | 50.0% | |
| GTGGGAGGAACAGGATACAT+AGG | + | chr8.2:32154694-32154713 | MS.gene93015:CDS | 50.0% | |
| ! | AGCAAGGTTCTAGTAGTGGG+AGG | + | chr8.2:32154679-32154698 | MS.gene93015:CDS | 50.0% |
| ! | GTTCTAGTAGTGGGAGGAAC+AGG | + | chr8.2:32154685-32154704 | MS.gene93015:CDS | 50.0% |
| ATGGGACATGCATTGGAGCC+AGG | + | chr8.2:32155584-32155603 | MS.gene93015:CDS | 55.0% | |
| GACATGCATTGGAGCCAGGA+AGG | + | chr8.2:32155588-32155607 | MS.gene93015:CDS | 55.0% | |
| GCTGGAAGCCTCTCTCAGAT+GGG | + | chr8.2:32155707-32155726 | MS.gene93015:CDS | 55.0% | |
| GGCCTAGACCCAGCAAGAAT+GGG | + | chr8.2:32155566-32155585 | MS.gene93015:CDS | 55.0% | |
| GGGTCTAGGCCAAATTCCGA+AGG | - | chr8.2:32155557-32155576 | None:intergenic | 55.0% | |
| GTCCCATTCTTGCTGGGTCT+AGG | - | chr8.2:32155571-32155590 | None:intergenic | 55.0% | |
| GTTGTAAGGAAGCCCTCAGG+AGG | - | chr8.2:32156101-32156120 | None:intergenic | 55.0% | |
| TGCTGGAAGCCTCTCTCAGA+TGG | + | chr8.2:32155706-32155725 | MS.gene93015:CDS | 55.0% | |
| TGGCCTAGACCCAGCAAGAA+TGG | + | chr8.2:32155565-32155584 | MS.gene93015:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 32154670 | 32156433 | 32154670 | ID=MS.gene93015 |
| chr8.2 | mRNA | 32154670 | 32156433 | 32154670 | ID=MS.gene93015.t1;Parent=MS.gene93015 |
| chr8.2 | exon | 32154670 | 32154999 | 32154670 | ID=MS.gene93015.t1.exon1;Parent=MS.gene93015.t1 |
| chr8.2 | CDS | 32154670 | 32154999 | 32154670 | ID=cds.MS.gene93015.t1;Parent=MS.gene93015.t1 |
| chr8.2 | exon | 32155545 | 32155785 | 32155545 | ID=MS.gene93015.t1.exon2;Parent=MS.gene93015.t1 |
| chr8.2 | CDS | 32155545 | 32155785 | 32155545 | ID=cds.MS.gene93015.t1;Parent=MS.gene93015.t1 |
| chr8.2 | exon | 32155925 | 32156128 | 32155925 | ID=MS.gene93015.t1.exon3;Parent=MS.gene93015.t1 |
| chr8.2 | CDS | 32155925 | 32156128 | 32155925 | ID=cds.MS.gene93015.t1;Parent=MS.gene93015.t1 |
| chr8.2 | exon | 32156270 | 32156433 | 32156270 | ID=MS.gene93015.t1.exon4;Parent=MS.gene93015.t1 |
| chr8.2 | CDS | 32156270 | 32156433 | 32156270 | ID=cds.MS.gene93015.t1;Parent=MS.gene93015.t1 |
| Gene Sequence |
| Protein sequence |
