Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060065.t1 | XP_013448021.1 | 98.4 | 308 | 5 | 0 | 1 | 308 | 105 | 412 | 2.00E-176 | 628.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060065.t1 | Q67ZU1 | 63.8 | 307 | 111 | 0 | 1 | 307 | 110 | 416 | 2.2e-120 | 433.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060065.t1 | A0A072TYW1 | 98.4 | 308 | 5 | 0 | 1 | 308 | 105 | 412 | 1.4e-176 | 628.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060063 | MS.gene060065 | 0.972673 | 3.76E-135 | -1.69E-46 |
| MS.gene060064 | MS.gene060065 | 0.91527 | 7.18E-85 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene029607 | MS.gene060065 | PPI |
| MS.gene060065 | MS.gene060315 | PPI |
| MS.gene060065 | MS.gene71663 | PPI |
| MS.gene060065 | MS.gene029609 | PPI |
| MS.gene060065 | MS.gene060313 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060065.t1 | MTR_7g029365 | 98.377 | 308 | 5 | 0 | 1 | 308 | 105 | 412 | 0.0 | 635 |
| MS.gene060065.t1 | MTR_7g029365 | 99.010 | 202 | 2 | 0 | 1 | 202 | 105 | 306 | 2.88e-149 | 421 |
| MS.gene060065.t1 | MTR_6g023740 | 60.390 | 308 | 120 | 2 | 2 | 307 | 106 | 413 | 2.69e-138 | 397 |
| MS.gene060065.t1 | MTR_6g023750 | 57.792 | 308 | 128 | 2 | 2 | 307 | 49 | 356 | 1.62e-132 | 380 |
| MS.gene060065.t1 | MTR_5g084950 | 53.595 | 306 | 142 | 0 | 1 | 306 | 95 | 400 | 2.15e-121 | 354 |
| MS.gene060065.t1 | MTR_6g023715 | 55.519 | 308 | 116 | 5 | 2 | 307 | 106 | 394 | 1.23e-120 | 352 |
| MS.gene060065.t1 | MTR_7g081050 | 48.693 | 306 | 157 | 0 | 1 | 306 | 98 | 403 | 3.11e-112 | 331 |
| MS.gene060065.t1 | MTR_3g081060 | 49.020 | 306 | 154 | 2 | 3 | 306 | 104 | 409 | 6.93e-108 | 320 |
| MS.gene060065.t1 | MTR_3g081040 | 48.525 | 305 | 156 | 1 | 3 | 306 | 100 | 404 | 3.14e-106 | 315 |
| MS.gene060065.t1 | MTR_6g033965 | 45.928 | 307 | 162 | 3 | 1 | 306 | 99 | 402 | 9.98e-99 | 296 |
| MS.gene060065.t1 | MTR_3g080980 | 45.724 | 304 | 165 | 0 | 3 | 306 | 100 | 403 | 1.31e-94 | 286 |
| MS.gene060065.t1 | MTR_6g033975 | 44.625 | 307 | 165 | 4 | 1 | 306 | 99 | 401 | 1.08e-92 | 281 |
| MS.gene060065.t1 | MTR_7g081060 | 43.182 | 308 | 172 | 3 | 1 | 307 | 99 | 404 | 4.11e-89 | 272 |
| MS.gene060065.t1 | MTR_1g107330 | 41.234 | 308 | 175 | 3 | 2 | 309 | 99 | 400 | 1.57e-86 | 265 |
| MS.gene060065.t1 | MTR_0595s0010 | 65.385 | 130 | 44 | 1 | 2 | 130 | 106 | 235 | 1.07e-59 | 194 |
| MS.gene060065.t1 | MTR_1g107330 | 44.776 | 201 | 110 | 1 | 2 | 202 | 99 | 298 | 4.39e-57 | 187 |
| MS.gene060065.t1 | MTR_5g006650 | 56.198 | 121 | 48 | 1 | 10 | 130 | 88 | 203 | 2.92e-40 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060065.t1 | AT5G14180 | 63.844 | 307 | 111 | 0 | 1 | 307 | 10 | 316 | 1.76e-155 | 437 |
| MS.gene060065.t1 | AT5G14180 | 63.844 | 307 | 111 | 0 | 1 | 307 | 1 | 307 | 2.12e-155 | 437 |
| MS.gene060065.t1 | AT5G14180 | 63.844 | 307 | 111 | 0 | 1 | 307 | 110 | 416 | 2.90e-154 | 438 |
| MS.gene060065.t1 | AT5G14180 | 65.347 | 202 | 70 | 0 | 1 | 202 | 110 | 311 | 2.28e-100 | 297 |
| MS.gene060065.t1 | AT5G14180 | 58.289 | 187 | 76 | 1 | 1 | 185 | 110 | 296 | 5.16e-79 | 243 |
| MS.gene060065.t1 | AT2G15230 | 38.361 | 305 | 182 | 3 | 2 | 306 | 87 | 385 | 2.39e-78 | 244 |
Find 62 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGATCTGCTAGAATTAA+AGG | 0.174183 | 7.1:-67114642 | None:intergenic |
| TGCTCATGCTGATTACATTA+TGG | 0.187385 | 7.1:+67117298 | MS.gene060065:CDS |
| AAACAGATCACTACACTATT+TGG | 0.227174 | 7.1:+67116092 | MS.gene060065:intron |
| CTTCTATGTTCTTACCCTTT+AGG | 0.233695 | 7.1:-67116131 | None:intergenic |
| GTTGCAGCCAAATCCTTTAT+TGG | 0.270019 | 7.1:+67115872 | MS.gene060065:CDS |
| TTTATGTACCTCACCAATAA+AGG | 0.282079 | 7.1:-67115885 | None:intergenic |
| CAGATCATGGCTTTGATGTT+TGG | 0.292443 | 7.1:+67114655 | MS.gene060065:CDS |
| GATTATGTGTTTAGCCAAAC+TGG | 0.299006 | 7.1:+67115546 | MS.gene060065:CDS |
| GCTCATGCTGATTACATTAT+GGG | 0.304433 | 7.1:+67117299 | MS.gene060065:CDS |
| AAGTCGTAGCAGTCAATTCT+AGG | 0.304700 | 7.1:-67116284 | None:intergenic |
| GTGTAAATATGCAGGCCTTT+TGG | 0.322829 | 7.1:+67115475 | MS.gene060065:intron |
| ATTAAAGGCAAGTCTTGTTC+TGG | 0.333137 | 7.1:-67114627 | None:intergenic |
| TACCTCACCAATAAAGGATT+TGG | 0.359496 | 7.1:-67115879 | None:intergenic |
| AATTAATCTTCTGCCCAGTT+TGG | 0.379068 | 7.1:-67115560 | None:intergenic |
| GACTTGATGACTGCATTAAC+TGG | 0.384778 | 7.1:+67116302 | MS.gene060065:CDS |
| ATGTTGAGAATTTACTTGAT+AGG | 0.389542 | 7.1:+67117225 | MS.gene060065:CDS |
| ATGTGGCTTAGATAAGCAAT+AGG | 0.409857 | 7.1:-67115830 | None:intergenic |
| CTAGCAGAATTTAATCCTAA+AGG | 0.421609 | 7.1:+67116116 | MS.gene060065:CDS |
| CCTTTAATTCTAGCAGATCA+TGG | 0.423751 | 7.1:+67114642 | MS.gene060065:CDS |
| TAGCAGAATTTAATCCTAAA+GGG | 0.427487 | 7.1:+67116117 | MS.gene060065:CDS |
| ACATAAACATACTGGGTTAG+AGG | 0.428314 | 7.1:-67114730 | None:intergenic |
| TTCTTTGTTGATGTTGATTG+AGG | 0.434847 | 7.1:-67116471 | None:intergenic |
| TAGTGCATTATGTTATAATC+TGG | 0.439008 | 7.1:-67117101 | None:intergenic |
| CCTCCATAGCTAATGAAGAT+AGG | 0.443401 | 7.1:-67117176 | None:intergenic |
| GACTTGAGAAAGGCATCAAC+AGG | 0.457432 | 7.1:-67116248 | None:intergenic |
| CATAAACATACTGGGTTAGA+GGG | 0.468329 | 7.1:-67114729 | None:intergenic |
| GATTATAACATAATGCACTA+TGG | 0.477158 | 7.1:+67117104 | MS.gene060065:CDS |
| AACAAAGAACATGGTGCACT+TGG | 0.480584 | 7.1:+67116485 | MS.gene060065:CDS |
| ATGTTGGATAGGTTATATAT+TGG | 0.480961 | 7.1:-67117140 | None:intergenic |
| CTACCTATCTTCATTAGCTA+TGG | 0.481467 | 7.1:+67117173 | MS.gene060065:CDS |
| TAATTACGTTGGCCACTCTC+TGG | 0.482825 | 7.1:+67115578 | MS.gene060065:CDS |
| TTGGATAGGTTATATATTGG+TGG | 0.488015 | 7.1:-67117137 | None:intergenic |
| AGGTAGATCATGTGGAATGT+TGG | 0.504399 | 7.1:-67117156 | None:intergenic |
| ATAAAGCTGCTGATTTCAGC+TGG | 0.510041 | 7.1:-67115802 | None:intergenic |
| AGCCACATGAACACTGCACT+TGG | 0.518331 | 7.1:+67115845 | MS.gene060065:CDS |
| TACTTCTCTTATCAACATCA+TGG | 0.520662 | 7.1:-67117256 | None:intergenic |
| GCTTTAGCTTCCTTCTCTGA+AGG | 0.525067 | 7.1:+67115767 | MS.gene060065:CDS |
| TGGATAGGTTATATATTGGT+GGG | 0.529275 | 7.1:-67117136 | None:intergenic |
| AACTATGCAGTTGTTAGACG+TGG | 0.537740 | 7.1:+67117050 | MS.gene060065:intron |
| GATCATGTGGAATGTTGGAT+AGG | 0.551442 | 7.1:-67117151 | None:intergenic |
| AGCCAAATCCTTTATTGGTG+AGG | 0.551660 | 7.1:+67115877 | MS.gene060065:CDS |
| GTCCCAAGACCAATTCCAAA+AGG | 0.554581 | 7.1:-67115490 | None:intergenic |
| CTCATGCTGATTACATTATG+GGG | 0.555559 | 7.1:+67117300 | MS.gene060065:CDS |
| TGTGGCTTAGATAAGCAATA+GGG | 0.559261 | 7.1:-67115829 | None:intergenic |
| CCTATCTTCATTAGCTATGG+AGG | 0.565466 | 7.1:+67117176 | MS.gene060065:CDS |
| TAGTCGCCGACATGTCTCAT+TGG | 0.565789 | 7.1:+67114704 | MS.gene060065:CDS |
| AAAGGCAAGTCTTGTTCTGG+AGG | 0.567063 | 7.1:-67114624 | None:intergenic |
| CACCAAGTGCAGTGTTCATG+TGG | 0.576864 | 7.1:-67115847 | None:intergenic |
| ACTATGCAGTTGTTAGACGT+GGG | 0.595087 | 7.1:+67117051 | MS.gene060065:intron |
| AGTCGTAGCAGTCAATTCTA+GGG | 0.599847 | 7.1:-67116283 | None:intergenic |
| ATTATGTGTTTAGCCAAACT+GGG | 0.603199 | 7.1:+67115547 | MS.gene060065:CDS |
| AAGGCAAGTCTTGTTCTGGA+GGG | 0.605642 | 7.1:-67114623 | None:intergenic |
| GTTTGGATTGCTAACACTAG+AGG | 0.610136 | 7.1:+67114672 | MS.gene060065:CDS |
| GGGTGCAGGATGGCATGACA+TGG | 0.627156 | 7.1:+67114592 | None:intergenic |
| AGCACATAGAGACTTGAGAA+AGG | 0.629811 | 7.1:-67116258 | None:intergenic |
| AGGGGTCCAATGAGACATGT+CGG | 0.633111 | 7.1:-67114710 | None:intergenic |
| ATGAAGATAGGTAGATCATG+TGG | 0.646816 | 7.1:-67117164 | None:intergenic |
| CTATGCAGTTGTTAGACGTG+GGG | 0.648539 | 7.1:+67117052 | MS.gene060065:intron |
| AGTAATGGAGTACCAGAGAG+TGG | 0.649875 | 7.1:-67115590 | None:intergenic |
| ATAAACATACTGGGTTAGAG+GGG | 0.656553 | 7.1:-67114728 | None:intergenic |
| ATCAACATCAACAAAGAACA+TGG | 0.657345 | 7.1:+67116476 | MS.gene060065:CDS |
| GGGCAGAAGATTAATTACGT+TGG | 0.668941 | 7.1:+67115567 | MS.gene060065:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATATATAAAATATTAAT+TGG | - | chr7.1:67116200-67116219 | None:intergenic | 0.0% |
| !! | TAATATATAAAATATTAATT+GGG | - | chr7.1:67116199-67116218 | None:intergenic | 0.0% |
| !! | TATAGTATAAATGTTTATAT+TGG | - | chr7.1:67116359-67116378 | None:intergenic | 10.0% |
| !!! | CATAATTTTATACATAAAAA+AGG | + | chr7.1:67116035-67116054 | MS.gene060065:intron | 10.0% |
| !! | AAAAATTTATGTATTAGAGA+AGG | - | chr7.1:67115409-67115428 | None:intergenic | 15.0% |
| !! | AAGATACATTAATTTCATTA+AGG | - | chr7.1:67115365-67115384 | None:intergenic | 15.0% |
| !! | ACAAATAGAATAGTAAAAAA+AGG | - | chr7.1:67115708-67115727 | None:intergenic | 15.0% |
| !! | AGAACATTATTAATTGTTTA+AGG | + | chr7.1:67116682-67116701 | MS.gene060065:intron | 15.0% |
| !! | CAAATAGAATAGTAAAAAAA+GGG | - | chr7.1:67115707-67115726 | None:intergenic | 15.0% |
| !! | CTAACATTTAATTAGATATT+TGG | + | chr7.1:67116930-67116949 | MS.gene060065:intron | 15.0% |
| !! | TTAAGGATTTATTACAATAA+AGG | - | chr7.1:67115348-67115367 | None:intergenic | 15.0% |
| !!! | AATATTTTTTTGTTTGTTTG+AGG | + | chr7.1:67114763-67114782 | MS.gene060065:intron | 15.0% |
| !!! | ACAATAAAGGTTTTTTTTTT+TGG | - | chr7.1:67115335-67115354 | None:intergenic | 15.0% |
| !!! | TTTGTTTATGCTTATTTTTA+AGG | + | chr7.1:67114875-67114894 | MS.gene060065:intron | 15.0% |
| !! | AACAAAAAACATAAACATAC+TGG | - | chr7.1:67114741-67114760 | None:intergenic | 20.0% |
| !! | AATTAAAACTGTTAGAAACA+AGG | + | chr7.1:67115255-67115274 | MS.gene060065:intron | 20.0% |
| !! | AATTATGTTAAATAAGTAGC+TGG | - | chr7.1:67115102-67115121 | None:intergenic | 20.0% |
| !! | ACAAAAAACATAAACATACT+GGG | - | chr7.1:67114740-67114759 | None:intergenic | 20.0% |
| !! | ACCACACAATAAATAATTTA+AGG | - | chr7.1:67115228-67115247 | None:intergenic | 20.0% |
| !! | AGAAAGTCTCAATTAATAAA+TGG | - | chr7.1:67115455-67115474 | None:intergenic | 20.0% |
| !! | GAAAATGCTAACAATAAAAT+TGG | - | chr7.1:67115206-67115225 | None:intergenic | 20.0% |
| !! | TCATGTAAAAAAGTAAGTAA+TGG | - | chr7.1:67115608-67115627 | None:intergenic | 20.0% |
| !! | TCCTTAAATTATTTATTGTG+TGG | + | chr7.1:67115224-67115243 | MS.gene060065:intron | 20.0% |
| !! | TGAAGACTATTCAAATATTT+AGG | - | chr7.1:67114909-67114928 | None:intergenic | 20.0% |
| !!! | ACATTTTTTTTTTTGCATGA+TGG | - | chr7.1:67116639-67116658 | None:intergenic | 20.0% |
| !!! | ATGCTTATTTTTAAGGAAAA+TGG | + | chr7.1:67114882-67114901 | MS.gene060065:intron | 20.0% |
| !!! | TAATTTTGACTTGTATTTGT+AGG | - | chr7.1:67114978-67114997 | None:intergenic | 20.0% |
| !!! | TTGAGTTTTTTTTAAATACG+AGG | + | chr7.1:67116599-67116618 | MS.gene060065:intron | 20.0% |
| !!! | TTGTTGTTTTTTCTTTCAAT+CGG | + | chr7.1:67116824-67116843 | MS.gene060065:intron | 20.0% |
| ! | AATAGTCTTCAACATAAAAC+TGG | + | chr7.1:67114918-67114937 | MS.gene060065:intron | 25.0% |
| ! | ATGTTGAGAATTTACTTGAT+AGG | + | chr7.1:67117225-67117244 | MS.gene060065:CDS | 25.0% |
| ! | ATGTTGGATAGGTTATATAT+TGG | - | chr7.1:67117143-67117162 | None:intergenic | 25.0% |
| ! | ATTGGTCAAAGTAAAATATG+TGG | - | chr7.1:67116341-67116360 | None:intergenic | 25.0% |
| ! | GACAATTTCTTATGTTACAT+TGG | - | chr7.1:67116159-67116178 | None:intergenic | 25.0% |
| ! | GATTATAACATAATGCACTA+TGG | + | chr7.1:67117104-67117123 | MS.gene060065:CDS | 25.0% |
| ! | TAATTTGACCTAAAAACAAG+AGG | + | chr7.1:67115010-67115029 | MS.gene060065:intron | 25.0% |
| ! | TAGCAGAATTTAATCCTAAA+GGG | + | chr7.1:67116117-67116136 | MS.gene060065:CDS | 25.0% |
| ! | TAGTGCATTATGTTATAATC+TGG | - | chr7.1:67117104-67117123 | None:intergenic | 25.0% |
| ! | TTGGTCAAAGTAAAATATGT+GGG | - | chr7.1:67116340-67116359 | None:intergenic | 25.0% |
| !! | ACAACAATTTTTACCTGAAT+TGG | - | chr7.1:67116412-67116431 | None:intergenic | 25.0% |
| !! | CTATTCTATTTGTCTAAAAC+TGG | + | chr7.1:67115715-67115734 | MS.gene060065:intron | 25.0% |
| !! | TTTATTTGTGTTACTGACTA+AGG | + | chr7.1:67117002-67117021 | MS.gene060065:intron | 25.0% |
| !!! | AATCGATTGAATTTTGAGAA+GGG | - | chr7.1:67116876-67116895 | None:intergenic | 25.0% |
| !!! | TCGTGATTATTGTGTTATTT+TGG | + | chr7.1:67116526-67116545 | MS.gene060065:intron | 25.0% |
| AAACAGATCACTACACTATT+TGG | + | chr7.1:67116092-67116111 | MS.gene060065:intron | 30.0% | |
| AAATAGTGTAGTGATCTGTT+TGG | - | chr7.1:67116093-67116112 | None:intergenic | 30.0% | |
| AACACATAATCAAAAACAGC+AGG | - | chr7.1:67115537-67115556 | None:intergenic | 30.0% | |
| AACATCGAAGAATGTATTGA+TGG | + | chr7.1:67116905-67116924 | MS.gene060065:intron | 30.0% | |
| AAGGATTTATTCTGTGTACT+CGG | - | chr7.1:67116771-67116790 | None:intergenic | 30.0% | |
| ATCAACATCAACAAAGAACA+TGG | + | chr7.1:67116476-67116495 | MS.gene060065:CDS | 30.0% | |
| ATTACCAACTCTTTCTCTTT+AGG | - | chr7.1:67115037-67115056 | None:intergenic | 30.0% | |
| ATTATGTGTTTAGCCAAACT+GGG | + | chr7.1:67115547-67115566 | MS.gene060065:CDS | 30.0% | |
| CACGAGTTAAATCTTACTTT+GGG | - | chr7.1:67116511-67116530 | None:intergenic | 30.0% | |
| CTAGCAGAATTTAATCCTAA+AGG | + | chr7.1:67116116-67116135 | MS.gene060065:CDS | 30.0% | |
| CTTCTCAAAATTCAATCGAT+TGG | + | chr7.1:67116875-67116894 | MS.gene060065:intron | 30.0% | |
| GCACAAAAACATTGTATTGA+AGG | - | chr7.1:67116013-67116032 | None:intergenic | 30.0% | |
| TACTTCTCTTATCAACATCA+TGG | - | chr7.1:67117259-67117278 | None:intergenic | 30.0% | |
| TCAAAATTCAATCGATTGGA+AGG | + | chr7.1:67116879-67116898 | MS.gene060065:intron | 30.0% | |
| TCACGAGTTAAATCTTACTT+TGG | - | chr7.1:67116512-67116531 | None:intergenic | 30.0% | |
| TGGATAGGTTATATATTGGT+GGG | - | chr7.1:67117139-67117158 | None:intergenic | 30.0% | |
| TGTTAGAAACAAGGTTAGAT+TGG | + | chr7.1:67115264-67115283 | MS.gene060065:intron | 30.0% | |
| TTGGATAGGTTATATATTGG+TGG | - | chr7.1:67117140-67117159 | None:intergenic | 30.0% | |
| TTTATGTACCTCACCAATAA+AGG | - | chr7.1:67115888-67115907 | None:intergenic | 30.0% | |
| ! | AATCAATTTTCCTTCAGAGA+AGG | - | chr7.1:67115780-67115799 | None:intergenic | 30.0% |
| ! | ACAATTTTTACCTGAATTGG+TGG | - | chr7.1:67116409-67116428 | None:intergenic | 30.0% |
| ! | TCTATTTGTCTAAAACTGGA+AGG | + | chr7.1:67115719-67115738 | MS.gene060065:intron | 30.0% |
| ! | TTCTTTGTTGATGTTGATTG+AGG | - | chr7.1:67116474-67116493 | None:intergenic | 30.0% |
| !! | CAATCGATTGAATTTTGAGA+AGG | - | chr7.1:67116877-67116896 | None:intergenic | 30.0% |
| AAAAACAGCAGGTAGATCAT+AGG | - | chr7.1:67115526-67115545 | None:intergenic | 35.0% | |
| AATTAATCTTCTGCCCAGTT+TGG | - | chr7.1:67115563-67115582 | None:intergenic | 35.0% | |
| AGTCTTCAACATAAAACTGG+AGG | + | chr7.1:67114921-67114940 | MS.gene060065:intron | 35.0% | |
| ATGAAGATAGGTAGATCATG+TGG | - | chr7.1:67117167-67117186 | None:intergenic | 35.0% | |
| ATGTGGCTTAGATAAGCAAT+AGG | - | chr7.1:67115833-67115852 | None:intergenic | 35.0% | |
| CCATGATCTGCTAGAATTAA+AGG | - | chr7.1:67114645-67114664 | None:intergenic | 35.0% | |
| CCTTTAATTCTAGCAGATCA+TGG | + | chr7.1:67114642-67114661 | MS.gene060065:CDS | 35.0% | |
| CTACCTATCTTCATTAGCTA+TGG | + | chr7.1:67117173-67117192 | MS.gene060065:CDS | 35.0% | |
| CTTCTATGTTCTTACCCTTT+AGG | - | chr7.1:67116134-67116153 | None:intergenic | 35.0% | |
| GACTTTCTGTGTAAATATGC+AGG | + | chr7.1:67115467-67115486 | MS.gene060065:intron | 35.0% | |
| GATTATGTGTTTAGCCAAAC+TGG | + | chr7.1:67115546-67115565 | MS.gene060065:CDS | 35.0% | |
| TACCTCACCAATAAAGGATT+TGG | - | chr7.1:67115882-67115901 | None:intergenic | 35.0% | |
| TGTGGCTTAGATAAGCAATA+GGG | - | chr7.1:67115832-67115851 | None:intergenic | 35.0% | |
| ! | ACATAAACATACTGGGTTAG+AGG | - | chr7.1:67114733-67114752 | None:intergenic | 35.0% |
| ! | ATAAACATACTGGGTTAGAG+GGG | - | chr7.1:67114731-67114750 | None:intergenic | 35.0% |
| ! | CATAAACATACTGGGTTAGA+GGG | - | chr7.1:67114732-67114751 | None:intergenic | 35.0% |
| ! | CTCATGCTGATTACATTATG+GGG | + | chr7.1:67117300-67117319 | MS.gene060065:CDS | 35.0% |
| ! | GCTCATGCTGATTACATTAT+GGG | + | chr7.1:67117299-67117318 | MS.gene060065:CDS | 35.0% |
| ! | TGCTCATGCTGATTACATTA+TGG | + | chr7.1:67117298-67117317 | MS.gene060065:CDS | 35.0% |
| !! | ATTAAAGGCAAGTCTTGTTC+TGG | - | chr7.1:67114630-67114649 | None:intergenic | 35.0% |
| !! | GAATTTTGAGAAGGGAGTTA+GGG | - | chr7.1:67116868-67116887 | None:intergenic | 35.0% |
| !! | TGAATTTTGAGAAGGGAGTT+AGG | - | chr7.1:67116869-67116888 | None:intergenic | 35.0% |
| !!! | CTTTAGGACCTCTTGTTTTT+AGG | - | chr7.1:67115021-67115040 | None:intergenic | 35.0% |
| AACAAAGAACATGGTGCACT+TGG | + | chr7.1:67116485-67116504 | MS.gene060065:CDS | 40.0% | |
| AACAATGTCCGTGTTTCACT+TGG | - | chr7.1:67115952-67115971 | None:intergenic | 40.0% | |
| AACTATGCAGTTGTTAGACG+TGG | + | chr7.1:67117050-67117069 | MS.gene060065:intron | 40.0% | |
| AAGTCGTAGCAGTCAATTCT+AGG | - | chr7.1:67116287-67116306 | None:intergenic | 40.0% | |
| ACTATGCAGTTGTTAGACGT+GGG | + | chr7.1:67117051-67117070 | MS.gene060065:intron | 40.0% | |
| AGCACATAGAGACTTGAGAA+AGG | - | chr7.1:67116261-67116280 | None:intergenic | 40.0% | |
| AGCCAAATCCTTTATTGGTG+AGG | + | chr7.1:67115877-67115896 | MS.gene060065:CDS | 40.0% | |
| AGGTAGATCATGTGGAATGT+TGG | - | chr7.1:67117159-67117178 | None:intergenic | 40.0% | |
| AGGTCCTAAAGAGAAAGAGT+TGG | + | chr7.1:67115030-67115049 | MS.gene060065:intron | 40.0% | |
| AGTCGTAGCAGTCAATTCTA+GGG | - | chr7.1:67116286-67116305 | None:intergenic | 40.0% | |
| CCTATCTTCATTAGCTATGG+AGG | + | chr7.1:67117176-67117195 | MS.gene060065:CDS | 40.0% | |
| CCTCCATAGCTAATGAAGAT+AGG | - | chr7.1:67117179-67117198 | None:intergenic | 40.0% | |
| GATCATGTGGAATGTTGGAT+AGG | - | chr7.1:67117154-67117173 | None:intergenic | 40.0% | |
| GGGCAGAAGATTAATTACGT+TGG | + | chr7.1:67115567-67115586 | MS.gene060065:CDS | 40.0% | |
| GTTGCAGCCAAATCCTTTAT+TGG | + | chr7.1:67115872-67115891 | MS.gene060065:CDS | 40.0% | |
| GTTTGGATTGCTAACACTAG+AGG | + | chr7.1:67114672-67114691 | MS.gene060065:CDS | 40.0% | |
| TAAAACTGGAAGGCTGTGTT+TGG | + | chr7.1:67115729-67115748 | MS.gene060065:intron | 40.0% | |
| TCATCACACCAAGTGAAACA+CGG | + | chr7.1:67115941-67115960 | MS.gene060065:intron | 40.0% | |
| TTCGTAAATGCCACCAATTC+AGG | + | chr7.1:67116396-67116415 | MS.gene060065:intron | 40.0% | |
| TTTGAGTGTCCGACACATAT+TGG | - | chr7.1:67115986-67116005 | None:intergenic | 40.0% | |
| ! | AACACGGACATTGTTTCTCT+CGG | + | chr7.1:67115957-67115976 | MS.gene060065:intron | 40.0% |
| ! | GACTTGATGACTGCATTAAC+TGG | + | chr7.1:67116302-67116321 | MS.gene060065:CDS | 40.0% |
| ! | GTGTAAATATGCAGGCCTTT+TGG | + | chr7.1:67115475-67115494 | MS.gene060065:intron | 40.0% |
| !! | ATAAAGCTGCTGATTTCAGC+TGG | - | chr7.1:67115805-67115824 | None:intergenic | 40.0% |
| !! | CAGATCATGGCTTTGATGTT+TGG | + | chr7.1:67114655-67114674 | MS.gene060065:CDS | 40.0% |
| !!! | ATATGCAGGCCTTTTGGAAT+TGG | + | chr7.1:67115481-67115500 | MS.gene060065:intron | 40.0% |
| CTATGCAGTTGTTAGACGTG+GGG | + | chr7.1:67117052-67117071 | MS.gene060065:intron | 45.0% | |
| GTCCCAAGACCAATTCCAAA+AGG | - | chr7.1:67115493-67115512 | None:intergenic | 45.0% | |
| TAATTACGTTGGCCACTCTC+TGG | + | chr7.1:67115578-67115597 | MS.gene060065:CDS | 45.0% | |
| TCTCGGACACCAATATGTGT+CGG | + | chr7.1:67115974-67115993 | MS.gene060065:intron | 45.0% | |
| ! | AGTAATGGAGTACCAGAGAG+TGG | - | chr7.1:67115593-67115612 | None:intergenic | 45.0% |
| ! | GCTTTAGCTTCCTTCTCTGA+AGG | + | chr7.1:67115767-67115786 | MS.gene060065:CDS | 45.0% |
| !! | AAAGGCAAGTCTTGTTCTGG+AGG | - | chr7.1:67114627-67114646 | None:intergenic | 45.0% |
| !! | AAGGCAAGTCTTGTTCTGGA+GGG | - | chr7.1:67114626-67114645 | None:intergenic | 45.0% |
| !! | GACTTGAGAAAGGCATCAAC+AGG | - | chr7.1:67116251-67116270 | None:intergenic | 45.0% |
| !!! | AGGCCTTTTGGAATTGGTCT+TGG | + | chr7.1:67115487-67115506 | MS.gene060065:intron | 45.0% |
| !!! | GGCCTTTTGGAATTGGTCTT+GGG | + | chr7.1:67115488-67115507 | MS.gene060065:intron | 45.0% |
| !! | AATATATAAAATATTAATTG+GGG | - | chr7.1:67116198-67116217 | None:intergenic | 5.0% |
| !! | ATTATAATTGAAATATTTAA+AGG | - | chr7.1:67116790-67116809 | None:intergenic | 5.0% |
| !! | TTAAATATTTCAATTATAAT+TGG | + | chr7.1:67116790-67116809 | MS.gene060065:intron | 5.0% |
| AGAAGGGAGTTAGGGCACAT+TGG | - | chr7.1:67116860-67116879 | None:intergenic | 50.0% | |
| AGCCACATGAACACTGCACT+TGG | + | chr7.1:67115845-67115864 | MS.gene060065:CDS | 50.0% | |
| AGGGGTCCAATGAGACATGT+CGG | - | chr7.1:67114713-67114732 | None:intergenic | 50.0% | |
| CACCAAGTGCAGTGTTCATG+TGG | - | chr7.1:67115850-67115869 | None:intergenic | 50.0% | |
| TAGTCGCCGACATGTCTCAT+TGG | + | chr7.1:67114704-67114723 | MS.gene060065:CDS | 50.0% | |
| ACTGGAAGGCTGTGTTTGGC+AGG | + | chr7.1:67115733-67115752 | MS.gene060065:intron | 55.0% | |
| CTGGAAGGCTGTGTTTGGCA+GGG | + | chr7.1:67115734-67115753 | MS.gene060065:intron | 55.0% | |
| GGGAGTTAGGGCACATTGGT+CGG | - | chr7.1:67116856-67116875 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 67114606 | 67117385 | 67114606 | ID=MS.gene060065 |
| chr7.1 | mRNA | 67114606 | 67117385 | 67114606 | ID=MS.gene060065.t1;Parent=MS.gene060065 |
| chr7.1 | exon | 67114606 | 67114740 | 67114606 | ID=MS.gene060065.t1.exon1;Parent=MS.gene060065.t1 |
| chr7.1 | CDS | 67114606 | 67114740 | 67114606 | ID=cds.MS.gene060065.t1;Parent=MS.gene060065.t1 |
| chr7.1 | exon | 67115489 | 67115599 | 67115489 | ID=MS.gene060065.t1.exon2;Parent=MS.gene060065.t1 |
| chr7.1 | CDS | 67115489 | 67115599 | 67115489 | ID=cds.MS.gene060065.t1;Parent=MS.gene060065.t1 |
| chr7.1 | exon | 67115755 | 67115898 | 67115755 | ID=MS.gene060065.t1.exon3;Parent=MS.gene060065.t1 |
| chr7.1 | CDS | 67115755 | 67115898 | 67115755 | ID=cds.MS.gene060065.t1;Parent=MS.gene060065.t1 |
| chr7.1 | exon | 67116098 | 67116138 | 67116098 | ID=MS.gene060065.t1.exon4;Parent=MS.gene060065.t1 |
| chr7.1 | CDS | 67116098 | 67116138 | 67116098 | ID=cds.MS.gene060065.t1;Parent=MS.gene060065.t1 |
| chr7.1 | exon | 67116244 | 67116323 | 67116244 | ID=MS.gene060065.t1.exon5;Parent=MS.gene060065.t1 |
| chr7.1 | CDS | 67116244 | 67116323 | 67116244 | ID=cds.MS.gene060065.t1;Parent=MS.gene060065.t1 |
| chr7.1 | exon | 67116418 | 67116513 | 67116418 | ID=MS.gene060065.t1.exon6;Parent=MS.gene060065.t1 |
| chr7.1 | CDS | 67116418 | 67116513 | 67116418 | ID=cds.MS.gene060065.t1;Parent=MS.gene060065.t1 |
| chr7.1 | exon | 67117060 | 67117385 | 67117060 | ID=MS.gene060065.t1.exon7;Parent=MS.gene060065.t1 |
| chr7.1 | CDS | 67117060 | 67117385 | 67117060 | ID=cds.MS.gene060065.t1;Parent=MS.gene060065.t1 |
| Gene Sequence |
| Protein sequence |
