AlfalfaGEDB | MS.gene37910

M. sativa cultivar XinJiangDaYe / MS.gene37910

KEGG: -
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF00854.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37910.t1	XP_003616931.1	97.4	587	15	0	1	587	1	587	0.00E+00	1120.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37910.t1	Q9LVE0	70.7	573	161	3	5	572	6	576	5.9e-231	801.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37910.t1	D5LQ68	97.4	587	15	0	1	587	1	587	0.0e+00	1120.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049149	MS.gene37910	0.806988	6.29E-50	-1.69E-46
MS.gene049150	MS.gene37910	0.851962	6.30E-61	-1.69E-46
MS.gene049151	MS.gene37910	0.817499	3.19E-52	-1.69E-46
MS.gene049153	MS.gene37910	0.856948	2.28E-62	-1.69E-46
MS.gene049260	MS.gene37910	0.816485	5.40E-52	-1.69E-46
MS.gene049356	MS.gene37910	0.870474	1.42E-66	-1.69E-46
MS.gene049369	MS.gene37910	0.830422	2.96E-55	-1.69E-46
MS.gene049758	MS.gene37910	0.840434	8.72E-58	-1.69E-46
MS.gene049910	MS.gene37910	0.800884	1.17E-48	-1.69E-46
MS.gene050128	MS.gene37910	0.877801	4.69E-69	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene011513	MS.gene37910	PPI
MS.gene015450	MS.gene37910	PPI
MS.gene025799	MS.gene37910	PPI
MS.gene025801	MS.gene37910	PPI
MS.gene09962	MS.gene37910	PPI
MS.gene09964	MS.gene37910	PPI
MS.gene21157	MS.gene37910	PPI
MS.gene21160	MS.gene37910	PPI
MS.gene62883	MS.gene37910	PPI
MS.gene71923	MS.gene37910	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37910.t1	MTR_5g085850	97.445	587	15	0	1	587	1	587	0.0	1182
MS.gene37910.t1	MTR_5g012270	47.826	575	273	7	3	556	4	572	0.0	555
MS.gene37910.t1	MTR_5g012290	50.526	570	253	7	9	556	8	570	0.0	553
MS.gene37910.t1	MTR_4g101380	51.579	570	252	7	9	556	6	573	0.0	543
MS.gene37910.t1	MTR_4g114340	49.472	568	268	9	18	571	12	574	1.92e-171	499
MS.gene37910.t1	MTR_7g067010	43.486	568	294	6	8	556	2	561	8.05e-153	451
MS.gene37910.t1	MTR_4g015080	42.408	573	302	8	7	559	11	575	3.40e-150	444
MS.gene37910.t1	MTR_3g112460	40.103	581	314	9	9	569	2	568	1.76e-147	437
MS.gene37910.t1	MTR_3g112470	40.275	581	313	9	9	569	2	568	1.74e-146	435
MS.gene37910.t1	MTR_3g462710	42.254	568	301	8	9	556	3	563	2.12e-146	435

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37910.t1	AT3G21670	70.681	573	161	3	5	572	6	576	0.0	808
MS.gene37910.t1	AT1G12110	48.862	571	269	6	18	567	15	583	0.0	540
MS.gene37910.t1	AT2G26690	50.264	569	255	9	18	571	12	567	0.0	526
MS.gene37910.t1	AT2G26690	49.358	545	248	9	42	571	3	534	3.66e-167	487
MS.gene37910.t1	AT2G26690	49.533	535	242	9	52	571	1	522	7.43e-164	478
MS.gene37910.t1	AT3G54140	42.328	567	302	6	9	556	3	563	3.60e-158	465
MS.gene37910.t1	AT3G54140	42.328	567	302	6	9	556	3	563	3.60e-158	465
MS.gene37910.t1	AT2G02040	41.093	567	310	5	9	556	20	581	2.28e-149	443
MS.gene37910.t1	AT5G01180	40.564	567	311	7	9	556	4	563	9.16e-145	431
MS.gene37910.t1	AT5G01180	40.564	567	311	7	9	556	4	563	9.16e-145	431

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Find 105 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCACTCACAATCCTCA+AGG	0.633571	5.3:+69455307	MS.gene37910:CDS
AAAGCTGATAAGGATCCTGC+TGG	0.518733	5.3:-69455220	None:intergenic
AAATCCAATGTGTCAGGATT+TGG	0.274378	5.3:+69453769	MS.gene37910:CDS
AACTTAGTGACATACTTGGT+TGG	0.500262	5.3:+69453032	MS.gene37910:CDS
AACTTGCTTGGCCTTCTTGG+TGG	0.427150	5.3:+69453116	MS.gene37910:CDS
AAGACAATGTAGGAAGAGGT+TGG	0.532441	5.3:+69453914	MS.gene37910:CDS
AAGGACTCACAAGTCTTCAA+AGG	0.534367	5.3:+69455326	MS.gene37910:CDS
AAGGTAGGATCAGAAGGGAT+AGG	0.490235	5.3:-69454084	None:intergenic
AATTTCAGCAGGGACAATGT+TGG	0.609240	5.3:+69453945	MS.gene37910:CDS
ACAAAGTAAGCAAGAAAAGA+TGG	0.527615	5.3:+69455632	MS.gene37910:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTGACACACTTATGTACA+AGG	-	chr5.3:69454445-69454464	None:intergenic	30.0%
ACAAAGTAAGCAAGAAAAGA+TGG	+	chr5.3:69455632-69455651	MS.gene37910:CDS	30.0%
ACATTCATGAACAGAAAAGT+TGG	+	chr5.3:69455184-69455203	MS.gene37910:CDS	30.0%
ACCATAGTTACCAACTTTAT+GGG	+	chr5.3:69453086-69453105	MS.gene37910:CDS	30.0%
ACCCTCCAAATAATAGTTAA+AGG	-	chr5.3:69454033-69454052	None:intergenic	30.0%
ATATCTTAAATGATGCTGCA+CGG	+	chr5.3:69454398-69454417	MS.gene37910:intron	30.0%
ATTGACACACTTATGTACAA+GGG	-	chr5.3:69454444-69454463	None:intergenic	30.0%
ATTGTGAATGAGGTCAAAAT+TGG	+	chr5.3:69455820-69455839	MS.gene37910:CDS	30.0%
ATTTGACACAAATGATCCAA+AGG	+	chr5.3:69453801-69453820	MS.gene37910:CDS	30.0%
CAATACAACCACTGAAAATA+AGG	-	chr5.3:69453884-69453903	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	69452690	69455867	69452690	ID=MS.gene37910
chr5.3	mRNA	69452690	69455867	69452690	ID=MS.gene37910.t1;Parent=MS.gene37910
chr5.3	exon	69452690	69452692	69452690	ID=MS.gene37910.t1.exon1;Parent=MS.gene37910.t1
chr5.3	CDS	69452690	69452692	69452690	ID=cds.MS.gene37910.t1;Parent=MS.gene37910.t1
chr5.3	exon	69452782	69452902	69452782	ID=MS.gene37910.t1.exon2;Parent=MS.gene37910.t1
chr5.3	CDS	69452782	69452902	69452782	ID=cds.MS.gene37910.t1;Parent=MS.gene37910.t1
chr5.3	exon	69452988	69453205	69452988	ID=MS.gene37910.t1.exon3;Parent=MS.gene37910.t1
chr5.3	CDS	69452988	69453205	69452988	ID=cds.MS.gene37910.t1;Parent=MS.gene37910.t1
chr5.3	exon	69453607	69454154	69453607	ID=MS.gene37910.t1.exon4;Parent=MS.gene37910.t1
chr5.3	CDS	69453607	69454154	69453607	ID=cds.MS.gene37910.t1;Parent=MS.gene37910.t1
chr5.3	exon	69454991	69455867	69454991	ID=MS.gene37910.t1.exon5;Parent=MS.gene37910.t1
chr5.3	CDS	69454991	69455867	69454991	ID=cds.MS.gene37910.t1;Parent=MS.gene37910.t1

Gene Sequence

>MS.gene37910

ATGGTATTCATTTCATCTTATACAATTTTTGTACTTGTTCAATGTTCAAACCTTGAAACTTTGTTAATGACTTAATTTTTTTTTTTGTGTAGGTTCTTGTTGCAAGTAATGGAGAGAAAAAAGGCATAGAAGACAATGCTGCGGTCGATTTTCGAGGTCACCCGGCTGACAAAACAAAAACTGGAGGATGGCTAGCAGCAGGACTAATCTTAGGTTTTTTTCAATCCATATAAATTTTTTAAGGCTCAATTTTATTTGGTTCCAACAAAATCATTGTGTATAATTTTTGTTTGTGCAGGTACTGAACTTGCTGAAAGAATATGTGTCATGGGAATTTCCATGAACTTAGTGACATACTTGGTTGGAGATTTACATCTCCATTCAGCTAGCTCTGCTACCATAGTTACCAACTTTATGGGAACTCTCAACTTGCTTGGCCTTCTTGGTGGTTTTCTAGCTGATGCAAAACTTGGCAGATACTTAACTGTTGCCATATCTGCAACCATAGCTACAGTGGTAAAATTTTCAGGCTTTCAATATTTTTATAAACTACTATGGAAGTTGTATTCACAATTATTATTATTAATTAATCTAGTACTAATGACCATTTTTAAAATTGTCTCTGAGGGGATTTGAACTCCGTCTCTTGAGGTTACGAGATTATGTTCTTACCACTAAGCCGATATCTCTTAAACAAAAGTGGTATTCACAAATTCATGCAAATAACATAGAACACTATGACATACACCAGATAAAATATTGAAACTGTCACGTAGACACCAGTAATAATTTAAGAAAATAGAAGAAATTGAAAGTAATAACTACATGTGTTTCTATGGTGTCGGACACCAGACACGCTTTTAACCTGAAGTGTTGTTACTGACTACTTTTTTCTTGACACTGTTGTGTTGCAACAGGGTGTGTGTATGTTAACTTTGGCTACAACAATTCCTAGCATGACACCTCCTCCATGCAGTGAAGTAAGAAGACAACACCATCAGTGCATTCAAGCAAGTGGCAAACAGTTAGCACTTCTCTTTGCAGCACTTTATACAATAGCTTTAGGTGGTGGAGGAATAAAATCCAATGTGTCAGGATTTGGATCTGACCAATTTGACACAAATGATCCAAAGGAAGAAAAGAATATGATATTTTTCTTCAACAGATTCTACTTTTTTATAAGTATTGGATCCTTATTTTCAGTGGTTGTATTGGTTTATGTTCAAGACAATGTAGGAAGAGGTTGGGGATATGGAATTTCAGCAGGGACAATGTTGGTAGCAGTTGGTATTTTGCTTTGTGGTACTCCATTGTATAGATTCAAGAAACCTCAAGGAAGTCCTTTAACTATTATTTGGAGGGTTTTGTTTTTGGCTTGGAAGAAGAGGACTCTTCCTATCCCTTCTGATCCTACCTTACTCAATGGTTATCTTGAAGCTAAGGTCACATATACAGACAAATTCAGGTATTTGTCTTCATTCTTGTAAAAGCTGTGAATAGTAGTGTTAGTTAGAACATCATGATTACACTTCTTTTCAATTATTGAACACTAACTAATCACTTAATCACTTTAACTGATTTATCATGTTTATTACTATTTATTGGGGGTAGCCAAAGTGTTTTTACATTTCAGAAATTATGTTATCTTTTTATGACTCATTTCTAGAAAAAGACAAACTATAATTGATTGATCAGCAATCTATCAAAAATATCTTAAATGATGCTGCACGGATATTCTGTCTTGCTTTGGTCCCTTGTACATAAGTGTGTCAATTTTGGTCTTTTGAATTGTATTGTATTGTATTGTATTCTTTTGGTATCATGGAGAATCAAATCTGATTTTTCCTGACTCTTCTATAGCATCTAGAATTGTATCTTGAAACTATTTATGTGATTCATTCTTCTCAAGTTAGGATCTAGCTTAAGACCATAGCACTTGATGGCATATCCCTTCATTGTCTTCGGACTAATATTTTCGGATAGATGCATGGACCGTAATGGTCGTTGAACAACTCTCTCTAAGAGAACTTGAACTTTATCGCTTGAGATTATAATATCAGAAGCTTAACACTAAATTGACACCTCATAGACTCGGCTACTAGTCCAATGTTGATATATTAGCATAGATGATAAGCAAAAATTGAACGAGAATCGCATAGGGTATCTAAAGCGAAAATTACCATAATTTCGAGGAATAATTTATAGATAAGGTGTCGATAATGATAATCTAGAAAATGGTAAACCAAAAGAAACACTGTGGAAAGAGATTTAATCTATCTTCATTGGAATTTTGTATGATAGGTACCTTGACAAAGCAGCAATCCTAGATGAAACAAACTCAAAGGACGGAAACAACGAAAATCCATGGTTAGTTTCAACAATGACTCAAGTTGAGGAAGTTAAAATGGTAATCAAACTCCTTCCCATTTGGTCAACATGCATACTCTTTTGGACAGTTTATTCTCAAATGAACACCTTCACAATTGAGCAAGCTACATTCATGAACAGAAAAGTTGGATCACTAGAGATTCCAGCAGGATCCTTATCAGCTTTTCTCATCATCACCATTCTCCTCTTTACTTCCCTAAATGAGAAAATAACTGTACCTTTAGCAAGAAAAATCACTCACAATCCTCAAGGACTCACAAGTCTTCAAAGGGTAGGAATTGGACTCATTTTCTCTATTGTTGCAATGGTAGTTTCTGCTATCGTTGAGAAAGAAAGAAGGGACAATGCAGTTAAAAAACAAACTACAATAAGTGCTTTTTGGCTTGTACCTCAGTTTTTTCTAGTTGGTGCTGGAGAAGCTTTTGCTTATGTTGGACAGTTAGAGTTTTTCATAAGGGAAGCACCTGAGAGGATGAAATCTATGAGTACTGGTCTTTTTCTATGTACACTTTCAATGGGATATTTTGTTAGTAGCTTATTGGTTTCAATTGTGGACAAAGTAAGCAAGAAAAGATGGTTGAAGAGTAATCTTGACAAGGGTAAGTTAGACTACTTCTATTGGTTGCTAGCAGTTCTTGGAGTGCTGAATTTTTTACTTTTTCTTGTCTTATCAATGAGGCATCAATACAAAGTTCAACACAACAATATTGAGAGTAATGACAATGTAGAGAAAGAGCTTGTGATTGTGAATGAGGTCAAAATTGGTGTTGATGGAAAGGAAGAAGCATAG

Protein sequence

>MS.gene37910.t1

MVLVASNGEKKGIEDNAAVDFRGHPADKTKTGGWLAAGLILGTELAERICVMGISMNLVTYLVGDLHLHSASSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAISATIATVGVCMLTLATTIPSMTPPPCSEVRRQHHQCIQASGKQLALLFAALYTIALGGGGIKSNVSGFGSDQFDTNDPKEEKNMIFFFNRFYFFISIGSLFSVVVLVYVQDNVGRGWGYGISAGTMLVAVGILLCGTPLYRFKKPQGSPLTIIWRVLFLAWKKRTLPIPSDPTLLNGYLEAKVTYTDKFRYLDKAAILDETNSKDGNNENPWLVSTMTQVEEVKMVIKLLPIWSTCILFWTVYSQMNTFTIEQATFMNRKVGSLEIPAGSLSAFLIITILLFTSLNEKITVPLARKITHNPQGLTSLQRVGIGLIFSIVAMVVSAIVEKERRDNAVKKQTTISAFWLVPQFFLVGAGEAFAYVGQLEFFIREAPERMKSMSTGLFLCTLSMGYFVSSLLVSIVDKVSKKRWLKSNLDKGKLDYFYWLLAVLGVLNFLLFLVLSMRHQYKVQHNNIESNDNVEKELVIVNEVKIGVDGKEEA