AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene070491


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070491.t1 MTR_5g085850 97.615 587 14 0 1 587 1 587 0.0 1184
MS.gene070491.t1 MTR_5g012270 48.571 560 263 6 18 556 17 572 0.0 554
MS.gene070491.t1 MTR_5g012290 50.980 561 248 6 18 556 15 570 0.0 553
MS.gene070491.t1 MTR_4g101380 51.579 570 252 7 9 556 6 573 0.0 544
MS.gene070491.t1 MTR_4g114340 49.472 568 268 9 18 571 12 574 1.72e-171 499
MS.gene070491.t1 MTR_7g067010 43.486 568 294 6 8 556 2 561 6.55e-153 451
MS.gene070491.t1 MTR_4g015080 42.408 573 302 8 7 559 11 575 5.19e-150 444
MS.gene070491.t1 MTR_3g112460 40.103 581 314 9 9 569 2 568 4.46e-147 436
MS.gene070491.t1 MTR_3g462710 42.254 568 301 8 9 556 3 563 2.55e-146 434
MS.gene070491.t1 MTR_3g112470 40.275 581 313 9 9 569 2 568 4.52e-146 434
MS.gene070491.t1 MTR_7g098200 40.071 564 311 10 1 550 1 551 1.93e-142 425
MS.gene070491.t1 MTR_7g098200 39.405 571 315 9 1 550 1 561 8.09e-142 424
MS.gene070491.t1 MTR_5g055000 38.879 571 312 11 28 569 16 578 7.58e-139 416
MS.gene070491.t1 MTR_3g112450 40.105 571 318 8 15 569 8 570 1.17e-137 412
MS.gene070491.t1 MTR_7g098040 37.349 581 333 9 1 558 2 574 2.02e-131 398
MS.gene070491.t1 MTR_7g098160 37.955 577 335 10 1 558 1 573 3.83e-130 394
MS.gene070491.t1 MTR_5g038060 38.078 562 328 5 28 569 29 590 1.99e-128 390
MS.gene070491.t1 MTR_7g010820 37.669 592 339 7 7 573 3 589 3.67e-128 389
MS.gene070491.t1 MTR_7g065080 36.425 593 333 11 4 579 6 571 5.97e-128 388
MS.gene070491.t1 MTR_1g075440 36.210 591 339 8 10 579 8 581 8.87e-128 387
MS.gene070491.t1 MTR_2g005130 36.720 561 338 7 16 569 26 576 2.04e-126 384
MS.gene070491.t1 MTR_7g088825 35.479 606 356 10 9 587 3 600 3.66e-126 384
MS.gene070491.t1 MTR_1g041875 38.577 534 309 6 16 537 15 541 3.89e-126 383
MS.gene070491.t1 MTR_7g098090 38.225 586 334 11 4 565 4 585 1.19e-125 383
MS.gene070491.t1 MTR_7g006540 36.931 593 331 9 13 567 45 632 1.72e-125 383
MS.gene070491.t1 MTR_1g041815 39.076 563 316 8 15 558 12 566 2.83e-125 381
MS.gene070491.t1 MTR_7g098180 37.585 588 332 10 9 571 11 588 3.16e-125 381
MS.gene070491.t1 MTR_4g019580 36.097 579 343 8 7 565 7 578 5.11e-124 378
MS.gene070491.t1 MTR_1g042310 36.234 563 333 8 15 558 11 566 6.13e-124 378
MS.gene070491.t1 MTR_3g069500 36.797 587 332 12 9 569 5 578 6.27e-124 377
MS.gene070491.t1 MTR_7g098220 36.905 588 342 8 1 567 1 580 8.52e-124 377
MS.gene070491.t1 MTR_7g098230 37.456 566 322 9 37 578 33 590 1.63e-123 377
MS.gene070491.t1 MTR_8g469480 37.030 559 331 6 33 571 41 598 9.34e-123 375
MS.gene070491.t1 MTR_1g041835 38.584 565 319 9 13 558 11 566 1.67e-122 374
MS.gene070491.t1 MTR_1g041885 39.479 499 283 5 53 539 5 496 6.13e-121 368
MS.gene070491.t1 MTR_7g088790 35.774 601 353 11 9 587 15 604 1.14e-120 370
MS.gene070491.t1 MTR_3g069420 37.113 582 329 12 7 565 12 579 2.29e-120 369
MS.gene070491.t1 MTR_5g014150 36.625 557 327 7 16 550 30 582 2.93e-119 366
MS.gene070491.t1 MTR_4g107670 37.258 569 326 7 19 561 13 576 5.54e-119 364
MS.gene070491.t1 MTR_3g072300 35.163 583 347 8 10 571 4 576 1.10e-118 364
MS.gene070491.t1 MTR_4g098800 35.182 577 352 7 10 567 13 586 3.37e-117 360
MS.gene070491.t1 MTR_8g469310 37.435 577 332 7 9 561 5 576 6.82e-117 359
MS.gene070491.t1 MTR_7g088820 34.549 576 350 8 19 573 16 585 1.39e-116 359
MS.gene070491.t1 MTR_3g069440 36.707 583 326 14 16 569 19 587 1.57e-116 358
MS.gene070491.t1 MTR_4g098800 35.243 576 351 7 10 566 78 650 1.79e-116 360
MS.gene070491.t1 MTR_1g042310 36.535 531 311 8 47 558 6 529 2.03e-116 357
MS.gene070491.t1 MTR_4g107510 33.913 575 342 7 7 556 23 584 3.02e-116 358
MS.gene070491.t1 MTR_1g042310 36.571 525 307 8 53 558 5 522 4.38e-115 353
MS.gene070491.t1 MTR_1g085090 35.179 560 340 8 28 575 17 565 4.63e-115 355
MS.gene070491.t1 MTR_3g462710 42.702 459 236 8 118 556 3 454 1.44e-114 349
MS.gene070491.t1 MTR_7g098220 37.454 542 310 8 47 567 3 536 1.30e-113 350
MS.gene070491.t1 MTR_7g065080 37.059 510 278 10 87 579 1 484 1.11e-112 345
MS.gene070491.t1 MTR_5g038380 37.671 584 308 8 19 564 17 582 3.34e-112 347
MS.gene070491.t1 MTR_8g469470 34.790 572 348 6 9 556 11 581 1.10e-111 346
MS.gene070491.t1 MTR_7g005930 33.913 575 354 9 11 571 19 581 1.68e-111 345
MS.gene070491.t1 MTR_4g107580 33.277 595 351 9 9 573 12 590 2.52e-110 343
MS.gene070491.t1 MTR_1g116930 34.458 563 351 8 26 575 19 576 4.52e-110 342
MS.gene070491.t1 MTR_3g005010 36.852 559 304 10 16 556 16 543 6.52e-110 340
MS.gene070491.t1 MTR_2g017750 34.642 586 352 10 15 571 19 602 1.83e-109 340
MS.gene070491.t1 MTR_4g107530 32.715 593 369 9 6 571 7 596 1.36e-108 338
MS.gene070491.t1 MTR_3g100980 33.570 563 349 7 24 569 10 564 2.92e-108 336
MS.gene070491.t1 MTR_7g111260 35.636 550 323 10 28 561 17 551 4.42e-108 337
MS.gene070491.t1 MTR_0294s0020 36.898 561 306 11 16 556 17 549 5.85e-108 335
MS.gene070491.t1 MTR_7g088820 35.182 523 314 7 72 573 5 523 7.45e-108 334
MS.gene070491.t1 MTR_7g098200 38.596 456 250 8 116 550 1 447 1.61e-107 332
MS.gene070491.t1 MTR_8g087810 34.530 585 345 10 16 567 7 586 9.94e-107 333
MS.gene070491.t1 MTR_4g033325 36.022 558 315 10 16 556 17 549 1.58e-106 332
MS.gene070491.t1 MTR_5g038190 33.100 571 358 7 6 556 2 568 1.47e-104 327
MS.gene070491.t1 MTR_4g033315 35.599 559 318 10 16 556 17 551 1.81e-104 326
MS.gene070491.t1 MTR_4g033310 35.599 559 318 10 16 556 17 551 1.81e-104 326
MS.gene070491.t1 MTR_3g014790 35.214 585 313 11 14 564 3 555 5.33e-104 325
MS.gene070491.t1 MTR_7g013270 33.808 562 347 9 23 568 83 635 3.75e-103 325
MS.gene070491.t1 MTR_3g100980 31.980 591 349 8 24 569 10 592 7.94e-103 323
MS.gene070491.t1 MTR_4g011280 32.570 568 349 12 32 576 34 590 2.00e-102 322
MS.gene070491.t1 MTR_4g033330 36.852 540 301 9 16 538 17 533 5.51e-102 319
MS.gene070491.t1 MTR_8g103233 34.091 572 352 8 28 580 15 580 7.63e-102 320
MS.gene070491.t1 MTR_8g038880 34.014 588 320 13 29 582 19 572 9.39e-102 320
MS.gene070491.t1 MTR_8g087780 33.793 580 355 9 16 567 7 585 1.76e-100 317
MS.gene070491.t1 MTR_7g088820 35.924 476 280 7 119 573 4 475 1.16e-99 311
MS.gene070491.t1 MTR_7g098150 39.013 446 260 7 1 438 1 442 4.06e-99 310
MS.gene070491.t1 MTR_4g033375 35.800 500 288 7 16 503 18 496 6.02e-97 305
MS.gene070491.t1 MTR_2g101590 33.097 565 350 10 28 570 24 582 7.46e-95 303
MS.gene070491.t1 MTR_2g101650 30.662 574 364 11 24 574 18 580 7.63e-95 302
MS.gene070491.t1 MTR_4g033395 36.327 501 284 9 16 503 18 496 2.19e-94 298
MS.gene070491.t1 MTR_4g107610 33.272 541 340 9 24 546 25 562 1.21e-92 297
MS.gene070491.t1 MTR_4g123537 34.759 561 333 9 14 556 25 570 2.64e-91 294
MS.gene070491.t1 MTR_2g101610 32.799 561 349 10 32 570 29 583 6.93e-91 293
MS.gene070491.t1 MTR_2g101640 30.742 566 364 10 28 571 21 580 1.32e-90 292
MS.gene070491.t1 MTR_7g064780 31.070 589 378 10 7 571 3 587 3.26e-90 290
MS.gene070491.t1 MTR_1g009200 33.517 543 333 10 28 549 25 560 4.11e-88 285
MS.gene070491.t1 MTR_1g026740 31.204 548 344 11 26 550 13 550 5.08e-88 284
MS.gene070491.t1 MTR_7g064800 32.804 567 352 10 9 550 4 566 4.89e-85 276
MS.gene070491.t1 MTR_1g057460 30.331 544 352 10 28 559 42 570 4.31e-84 273
MS.gene070491.t1 MTR_1g026750 31.383 564 353 11 28 567 16 569 1.45e-83 272
MS.gene070491.t1 MTR_1g026770 32.103 542 340 9 32 553 17 550 4.91e-83 270
MS.gene070491.t1 MTR_1g057460 30.739 514 329 10 58 559 1 499 3.24e-81 264
MS.gene070491.t1 MTR_2g101560 31.794 563 355 11 32 571 29 585 7.19e-80 264
MS.gene070491.t1 MTR_2g093160 30.056 539 355 11 29 556 20 547 2.30e-79 260
MS.gene070491.t1 MTR_4g033325 34.490 461 260 10 113 556 16 451 4.00e-79 257
MS.gene070491.t1 MTR_7g052600 33.752 557 322 13 9 553 4 525 4.19e-79 259
MS.gene070491.t1 MTR_0236s0050 31.712 514 324 10 58 559 1 499 4.58e-79 258
MS.gene070491.t1 MTR_4g033385 34.858 459 260 10 115 556 16 452 3.56e-78 254
MS.gene070491.t1 MTR_4g033325 34.813 428 251 8 146 556 9 425 6.46e-77 251
MS.gene070491.t1 MTR_2g093180 30.314 541 352 11 29 556 20 548 9.89e-77 253
MS.gene070491.t1 MTR_7g051880 33.455 550 322 14 14 553 10 525 1.20e-74 247
MS.gene070491.t1 MTR_2g093640 28.361 543 365 9 26 556 17 547 2.09e-73 244
MS.gene070491.t1 MTR_4g024930 31.010 574 319 14 16 554 22 553 2.81e-73 245
MS.gene070491.t1 MTR_7g051830 33.088 544 321 12 20 553 15 525 3.18e-73 243
MS.gene070491.t1 MTR_7g098210 30.829 519 251 12 53 550 5 436 6.16e-68 227
MS.gene070491.t1 MTR_6g008690 29.220 551 326 13 47 566 24 541 1.48e-64 221
MS.gene070491.t1 MTR_4g033310 34.657 277 161 4 293 556 218 487 2.12e-50 181
MS.gene070491.t1 MTR_4g033310 40.000 185 97 2 16 200 17 187 2.74e-31 127
MS.gene070491.t1 MTR_1g009170 28.645 391 222 8 161 536 10 358 1.57e-40 152
MS.gene070491.t1 MTR_3g065350 40.123 162 96 1 336 496 1 162 6.48e-34 127
MS.gene070491.t1 MTR_4g033390 32.979 94 59 1 475 564 30 123 5.04e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070491.t1 AT3G21670 70.681 573 161 3 5 572 6 576 0.0 810
MS.gene070491.t1 AT1G12110 48.862 571 269 6 18 567 15 583 0.0 540
MS.gene070491.t1 AT2G26690 50.086 579 260 10 9 571 2 567 0.0 527
MS.gene070491.t1 AT2G26690 49.358 545 248 9 42 571 3 534 3.15e-167 487
MS.gene070491.t1 AT2G26690 49.533 535 242 9 52 571 1 522 7.93e-164 478
MS.gene070491.t1 AT3G54140 42.328 567 302 6 9 556 3 563 4.99e-158 464
MS.gene070491.t1 AT3G54140 42.328 567 302 6 9 556 3 563 4.99e-158 464
MS.gene070491.t1 AT2G02040 41.093 567 310 5 9 556 20 581 3.25e-149 442
MS.gene070491.t1 AT5G01180 40.893 560 305 7 16 556 11 563 9.67e-145 431
MS.gene070491.t1 AT5G01180 40.893 560 305 7 16 556 11 563 9.67e-145 431
MS.gene070491.t1 AT5G01180 40.893 560 305 7 16 556 11 563 9.67e-145 431
MS.gene070491.t1 AT1G62200 39.928 556 319 4 13 556 35 587 8.48e-144 429
MS.gene070491.t1 AT1G62200 38.120 585 318 5 13 556 49 630 6.21e-138 415
MS.gene070491.t1 AT1G62200 38.120 585 318 5 13 556 35 616 7.07e-138 414
MS.gene070491.t1 AT1G59740 38.462 572 330 7 6 561 17 582 9.81e-134 403
MS.gene070491.t1 AT1G68570 39.896 579 319 11 24 577 17 591 2.91e-127 386
MS.gene070491.t1 AT5G46050 40.111 541 295 8 16 536 13 544 9.65e-127 385
MS.gene070491.t1 AT1G68570 40.463 561 305 11 42 577 5 561 2.11e-125 380
MS.gene070491.t1 AT2G02020 37.590 556 304 7 9 555 21 542 4.20e-125 379
MS.gene070491.t1 AT3G53960 35.826 575 341 9 16 569 23 590 7.04e-124 378
MS.gene070491.t1 AT2G37900 35.390 551 338 5 16 556 24 566 1.61e-122 374
MS.gene070491.t1 AT1G33440 36.632 576 336 9 15 569 23 590 1.23e-120 369
MS.gene070491.t1 AT5G13400 35.395 582 340 8 13 567 46 618 1.05e-117 363
MS.gene070491.t1 AT1G32450 35.739 568 336 8 9 550 14 578 5.51e-117 360
MS.gene070491.t1 AT5G46040 37.500 576 328 10 16 571 13 576 3.94e-116 357
MS.gene070491.t1 AT1G27040 36.643 554 323 6 20 555 17 560 1.13e-114 353
MS.gene070491.t1 AT1G27040 36.643 554 323 6 20 555 13 556 1.14e-114 353
MS.gene070491.t1 AT1G69850 36.678 578 312 8 20 556 15 579 2.16e-114 353
MS.gene070491.t1 AT1G69870 35.273 567 339 8 28 569 49 612 8.60e-114 352
MS.gene070491.t1 AT3G54450 34.729 573 319 11 27 571 9 554 3.44e-113 349
MS.gene070491.t1 AT4G21680 37.345 565 325 8 15 555 13 572 7.53e-113 349
MS.gene070491.t1 AT1G18880 35.714 574 334 9 9 556 2 566 6.52e-111 344
MS.gene070491.t1 AT2G37900 36.122 490 295 5 77 556 6 487 1.04e-110 340
MS.gene070491.t1 AT2G40460 36.364 572 323 10 15 563 9 562 1.58e-110 343
MS.gene070491.t1 AT1G72140 35.536 560 311 11 18 556 22 552 4.29e-109 338
MS.gene070491.t1 AT5G62680 34.215 567 343 8 33 571 46 610 1.14e-108 339
MS.gene070491.t1 AT1G27040 36.194 536 306 6 42 555 7 528 1.49e-108 336
MS.gene070491.t1 AT2G02020 34.532 556 300 7 9 555 21 521 2.42e-106 330
MS.gene070491.t1 AT5G19640 34.495 545 325 10 31 560 60 587 3.98e-103 324
MS.gene070491.t1 AT5G46050 40.590 441 233 8 116 536 1 432 8.01e-102 317
MS.gene070491.t1 AT1G22540 36.151 556 315 11 19 556 19 552 9.15e-102 319
MS.gene070491.t1 AT3G16180 33.506 579 356 10 24 576 16 591 1.42e-101 320
MS.gene070491.t1 AT1G72130 33.800 571 325 10 1 556 1 533 3.52e-101 317
MS.gene070491.t1 AT3G47960 33.880 549 334 7 33 556 64 608 6.40e-101 319
MS.gene070491.t1 AT1G52190 31.833 600 374 10 15 586 7 599 1.04e-100 318
MS.gene070491.t1 AT1G22550 35.450 567 323 13 14 556 12 559 1.29e-100 317
MS.gene070491.t1 AT1G27080 35.651 561 337 11 28 573 12 563 3.47e-100 316
MS.gene070491.t1 AT5G62730 34.039 567 325 9 16 556 42 585 2.21e-99 314
MS.gene070491.t1 AT1G22570 36.007 536 309 11 18 534 18 538 3.73e-99 313
MS.gene070491.t1 AT1G72120 35.727 557 319 10 18 556 17 552 1.37e-97 308
MS.gene070491.t1 AT1G72125 34.050 558 331 11 18 556 17 556 1.78e-95 303
MS.gene070491.t1 AT5G62730 33.759 548 314 9 35 556 2 526 1.78e-93 297
MS.gene070491.t1 AT3G25260 32.714 538 325 8 20 553 11 515 4.22e-92 293
MS.gene070491.t1 AT1G27080 35.417 528 317 11 61 573 3 521 3.28e-91 291
MS.gene070491.t1 AT1G22570 35.146 515 300 11 39 534 2 501 2.39e-89 286
MS.gene070491.t1 AT3G25280 33.640 544 318 11 20 553 11 521 4.15e-89 285
MS.gene070491.t1 AT1G69860 33.700 546 341 8 28 560 16 553 2.47e-88 284
MS.gene070491.t1 AT3G45710 31.022 548 351 11 30 567 21 551 4.44e-87 281
MS.gene070491.t1 AT3G45680 30.380 553 361 11 23 566 15 552 1.41e-86 280
MS.gene070491.t1 AT5G28470 29.853 546 364 7 24 553 11 553 3.23e-85 276
MS.gene070491.t1 AT3G45650 29.234 561 370 9 16 567 8 550 4.92e-85 276
MS.gene070491.t1 AT3G45720 29.570 558 371 10 20 568 9 553 4.50e-83 270
MS.gene070491.t1 AT3G45700 30.853 551 352 13 29 572 15 543 5.28e-83 270
MS.gene070491.t1 AT5G28470 29.670 546 363 8 24 553 11 551 3.42e-82 268
MS.gene070491.t1 AT3G45660 28.975 566 373 10 12 567 3 549 4.40e-81 265
MS.gene070491.t1 AT3G45660 28.975 566 373 10 12 567 3 549 4.40e-81 265
MS.gene070491.t1 AT3G45660 28.975 566 373 10 12 567 24 570 9.05e-81 265
MS.gene070491.t1 AT3G45650 28.109 587 369 10 16 567 8 576 3.28e-80 264
MS.gene070491.t1 AT1G72130 33.875 431 250 8 141 556 5 415 2.21e-76 249
MS.gene070491.t1 AT1G72130 33.875 431 250 8 141 556 5 415 2.21e-76 249
MS.gene070491.t1 AT5G14940 28.467 548 342 12 47 566 24 549 2.29e-72 242
MS.gene070491.t1 AT3G45690 28.597 549 331 14 29 571 17 510 1.87e-68 231
MS.gene070491.t1 AT3G01350 27.911 541 332 12 47 549 24 544 2.69e-60 210
MS.gene070491.t1 AT5G11570 27.626 514 302 9 39 547 22 470 4.71e-57 199
MS.gene070491.t1 AT2G38100 26.602 515 327 14 58 553 2 484 5.65e-41 155
MS.gene070491.t1 AT2G38100 26.602 515 327 14 58 553 18 500 9.90e-41 155
MS.gene070491.t1 AT2G38100 26.602 515 327 14 58 553 24 506 1.87e-40 154

Find 101 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAACTTGCTTGGCCTTCT+TGG 0.112136 5.4:+67883678 MS.gene070491:CDS
TACCATAGTTACCAACTTTA+TGG 0.128785 5.4:+67883650 MS.gene070491:CDS
GAAGTCCTTTAACTATTATT+TGG 0.187229 5.4:+67884570 MS.gene070491:CDS
AAATCCAATGTGTCAGGTTT+TGG 0.235332 5.4:+67884314 MS.gene070491:CDS
TATTGGTTGCTAGCAGTTCT+TGG 0.240252 5.4:+67886244 MS.gene070491:CDS
ACCCTCCAAATAATAGTTAA+AGG 0.242437 5.4:-67884575 None:intergenic
GTAGGAAGAGGTTGGGGATA+TGG 0.242746 5.4:+67884467 MS.gene070491:CDS
CAATACAACCACTGAAAATA+AGG 0.259078 5.4:-67884426 None:intergenic
ATCATATTCTTCTCTTCCTT+TGG 0.275627 5.4:-67884362 None:intergenic
GGTCAACATGCATACTCTTT+TGG 0.280969 5.4:+67885669 MS.gene070491:CDS
GCACTTTATACAATAGCTTT+AGG 0.298363 5.4:+67884278 MS.gene070491:CDS
TCAAGTTGAGGAAGTTAAAA+TGG 0.307630 5.4:+67885625 MS.gene070491:CDS
TCACATATACAGACAAATTC+AGG 0.344673 5.4:+67884678 MS.gene070491:CDS
CAAGTATGTCACTAAGTTCA+TGG 0.354511 5.4:-67883592 None:intergenic
ACCATAGTTACCAACTTTAT+GGG 0.356405 5.4:+67883651 MS.gene070491:CDS
GTAAGTTAGATTACTTCTAT+TGG 0.376728 5.4:+67886227 MS.gene070491:CDS
CTAGCAGCAGGACTAATCTT+AGG 0.379230 5.4:+67883445 MS.gene070491:CDS
TCCCATAAAGTTGGTAACTA+TGG 0.388879 5.4:-67883652 None:intergenic
GAGTATGCATGTTGACCAAA+TGG 0.390833 5.4:-67885663 None:intergenic
TGTGGCTATGGTTGCAGATA+TGG 0.392408 5.4:-67883745 None:intergenic
GAAGTCAAAATTGGTGTTGA+TGG 0.395194 5.4:+67886379 MS.gene070491:CDS
TGCTGAAAGAATATGTGTTA+TGG 0.407089 5.4:+67883563 MS.gene070491:CDS
TAATCAAACTCCTTCCCATT+TGG 0.408088 5.4:+67885648 MS.gene070491:CDS
GCTGAAAGAATATGTGTTAT+GGG 0.417604 5.4:+67883564 MS.gene070491:CDS
AACTTGCTTGGCCTTCTTGG+TGG 0.427150 5.4:+67883681 MS.gene070491:CDS
AGACAATGTAGGAAGAGGTT+GGG 0.428903 5.4:+67884460 MS.gene070491:CDS
CATGGTGGAGGTGTCATACT+AGG 0.429809 5.4:-67884185 None:intergenic
ATGGGAACTCTCAACTTGCT+TGG 0.432571 5.4:+67883669 MS.gene070491:CDS
AGTCTTCAAAGGGTAGGAAT+TGG 0.433015 5.4:+67885887 MS.gene070491:CDS
TAGCTTATTGGTTTCAATTG+TGG 0.435213 5.4:+67886159 MS.gene070491:CDS
CATGAACTTAGTGACATACT+TGG 0.438629 5.4:+67883593 MS.gene070491:CDS
TAGGTTCTTGTTGCAAGTAA+TGG 0.442403 5.4:+67883343 MS.gene070491:intron
CCTTTGAGTTTGTTTCATCT+AGG 0.443818 5.4:-67885562 None:intergenic
CTCATAGATTTCATCCTCTC+AGG 0.449651 5.4:-67886091 None:intergenic
ATTGTGAATGAAGTCAAAAT+TGG 0.454980 5.4:+67886370 MS.gene070491:CDS
GGAATAAAATCCAATGTGTC+AGG 0.457806 5.4:+67884308 MS.gene070491:CDS
TTTCTATGTACACTTTCAAT+GGG 0.473347 5.4:+67886124 MS.gene070491:CDS
TTTCTAGCTGATGCAAAACT+TGG 0.477374 5.4:+67883705 MS.gene070491:CDS
GTCCTTTAACTATTATTTGG+AGG 0.477749 5.4:+67884573 MS.gene070491:CDS
AAGGTAGGATCAGAAGGGAT+AGG 0.490235 5.4:-67884629 None:intergenic
TGGGGATATGGAATTTCAGC+AGG 0.493923 5.4:+67884479 MS.gene070491:CDS
TCTGATCCTACCTTACTCAA+TGG 0.497892 5.4:+67884638 MS.gene070491:CDS
TTCAAGATAACCATTGAGTA+AGG 0.498836 5.4:-67884648 None:intergenic
AACTTAGTGACATACTTGGT+TGG 0.500262 5.4:+67883597 MS.gene070491:CDS
CAAAATTGGTGTTGATGGAA+AGG 0.501352 5.4:+67886384 MS.gene070491:CDS
ACATTCATGAACAGAAAAGT+TGG 0.504425 5.4:+67885734 MS.gene070491:CDS
GATGATGAGAAAAGCTGATA+AGG 0.506299 5.4:-67885780 None:intergenic
TCCTTTAACTATTATTTGGA+GGG 0.510757 5.4:+67884574 MS.gene070491:CDS
CTTACTTCACTGCATGGTGG+AGG 0.512876 5.4:-67884197 None:intergenic
TATACAATAGCTTTAGGTGG+TGG 0.514951 5.4:+67884284 MS.gene070491:CDS
GTTGAGAGTTCCCATAAAGT+TGG 0.518445 5.4:-67883661 None:intergenic
TTGAGTAAGGTAGGATCAGA+AGG 0.518588 5.4:-67884635 None:intergenic
AAAGCTGATAAGGATCCTGC+TGG 0.518733 5.4:-67885770 None:intergenic
AGGATGAAATCTATGAGTAC+TGG 0.519350 5.4:+67886097 MS.gene070491:CDS
GTTTATGTTCAAGACAATGT+AGG 0.523353 5.4:+67884449 MS.gene070491:CDS
TGAAGACTTGTGAGTCCTTG+AGG 0.526978 5.4:-67885872 None:intergenic
ACAAAGTAAGCAAGAAAAGA+TGG 0.527615 5.4:+67886182 MS.gene070491:CDS
ACAATAGCTTTAGGTGGTGG+AGG 0.528481 5.4:+67884287 MS.gene070491:CDS
GTTCAAGACAATGTAGGAAG+AGG 0.528760 5.4:+67884455 MS.gene070491:CDS
AAGACAATGTAGGAAGAGGT+TGG 0.532441 5.4:+67884459 MS.gene070491:CDS
AAGGACTCACAAGTCTTCAA+AGG 0.534367 5.4:+67885876 MS.gene070491:CDS
CAATGGTTATCTTGAAGCTA+AGG 0.534910 5.4:+67884655 MS.gene070491:CDS
GACAATGTAGGAAGAGGTTG+GGG 0.549581 5.4:+67884461 MS.gene070491:CDS
TAGGGAAGTAAAGAGGAGAA+TGG 0.551633 5.4:-67885804 None:intergenic
ACTGGAGGATGGCTAGCAGC+AGG 0.553684 5.4:+67883433 MS.gene070491:CDS
TCTCATTTAGGGAAGTAAAG+AGG 0.554210 5.4:-67885811 None:intergenic
AGTATGCATGTTGACCAAAT+GGG 0.557444 5.4:-67885662 None:intergenic
TGTCTTCTTACTTCACTGCA+TGG 0.561319 5.4:-67884203 None:intergenic
TTCAACAATGACTCAAGTTG+AGG 0.561755 5.4:+67885613 MS.gene070491:CDS
CTATCGTTGAGAAAGAAAGA+AGG 0.562368 5.4:+67885945 MS.gene070491:CDS
CTAGGATTGCTGCTTTGTCA+AGG 0.562473 5.4:-67885544 None:intergenic
TGGTAGCAGAGCTAGCTGAA+TGG 0.566779 5.4:-67883632 None:intergenic
AGGACTCACAAGTCTTCAAA+GGG 0.568729 5.4:+67885877 MS.gene070491:CDS
AGATAACCATTGAGTAAGGT+AGG 0.570016 5.4:-67884644 None:intergenic
GGGACAATGTTGGTAGCAGT+TGG 0.571832 5.4:+67884500 MS.gene070491:CDS
CTTCTTACTTCACTGCATGG+TGG 0.575455 5.4:-67884200 None:intergenic
CATCAGTGCATTCAAGCAAG+TGG 0.588126 5.4:+67884230 MS.gene070491:CDS
AGATCCAAAACCTGACACAT+TGG 0.589762 5.4:-67884318 None:intergenic
CAGCTAGAAAACCACCAAGA+AGG 0.599258 5.4:-67883692 None:intergenic
GGGTGTGTGTATGTTAACTT+TGG 0.601232 5.4:+67884151 MS.gene070491:intron
ATTTGACACAAATGATCCAA+AGG 0.609233 5.4:+67884346 MS.gene070491:CDS
AATTTCAGCAGGGACAATGT+TGG 0.609240 5.4:+67884490 MS.gene070491:CDS
CTTTATACAATAGCTTTAGG+TGG 0.613828 5.4:+67884281 MS.gene070491:CDS
GTCATTGTTGAAACTAACCA+TGG 0.615360 5.4:-67885602 None:intergenic
ACGGAAACAACGAAAATCCA+TGG 0.615614 5.4:+67885585 MS.gene070491:CDS
CCTAGATGAAACAAACTCAA+AGG 0.617218 5.4:+67885562 MS.gene070491:CDS
GATGAAACAAACTCAAAGGA+CGG 0.619454 5.4:+67885566 MS.gene070491:CDS
GGATCACTAGAGATTCCAGC+AGG 0.623448 5.4:+67885755 MS.gene070491:CDS
AAAATCACTCACAATCCTCA+AGG 0.633571 5.4:+67885857 MS.gene070491:CDS
TATCGTTGAGAAAGAAAGAA+GGG 0.638376 5.4:+67885946 MS.gene070491:CDS
TGCATGTTGACCAAATGGGA+AGG 0.645769 5.4:-67885658 None:intergenic
CTCACAAGTCTTCAAAGGGT+AGG 0.662620 5.4:+67885881 MS.gene070491:CDS
TGAGTAAGGTAGGATCAGAA+GGG 0.672680 5.4:-67884634 None:intergenic
ATAGTTAAAGGACTTCCTTG+AGG 0.673498 5.4:-67884563 None:intergenic
TTGAAGAGTAATCTTGACAA+GGG 0.673892 5.4:+67886205 MS.gene070491:CDS
TCATAAGGGAAGCACCTGAG+AGG 0.674202 5.4:+67886077 MS.gene070491:CDS
GTTGAAGAGTAATCTTGACA+AGG 0.676705 5.4:+67886204 MS.gene070491:CDS
ATCTGCAACCATAGCCACAG+TGG 0.695521 5.4:+67883749 MS.gene070491:CDS
TGTAGCTTGCTCAATTGTGA+AGG 0.695807 5.4:-67885714 None:intergenic
GGGGATATGGAATTTCAGCA+GGG 0.706056 5.4:+67884480 MS.gene070491:CDS
AGGCACAGAAGACAATGCTG+CGG 0.724358 5.4:+67883375 MS.gene070491:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTTTATAAACTACTA+TGG + chr5.4:67883790-67883809 MS.gene070491:intron 10.0%
!! AATCCATAAAAAAATTTCTA+AGG + chr5.4:67883476-67883495 MS.gene070491:intron 15.0%
!! ATACTTATTACTATTTATTG+GGG + chr5.4:67884819-67884838 MS.gene070491:intron 15.0%
!! CATACTTATTACTATTTATT+GGG + chr5.4:67884818-67884837 MS.gene070491:intron 15.0%
!! TCATACTTATTACTATTTAT+TGG + chr5.4:67884817-67884836 MS.gene070491:intron 15.0%
!!! TTCTACTTTTTTATAAGTAT+TGG + chr5.4:67884401-67884420 MS.gene070491:CDS 15.0%
!! GATAATGATAATCTAGAAAA+TGG + chr5.4:67885455-67885474 MS.gene070491:intron 20.0%
!! TAAATTATTCCTCGAAATTA+TGG - chr5.4:67885422-67885441 None:intergenic 20.0%
!! TACTTATTACTATTTATTGG+GGG + chr5.4:67884820-67884839 MS.gene070491:intron 20.0%
!!! ATATTTTGTTAGTAGCTTAT+TGG + chr5.4:67886147-67886166 MS.gene070491:CDS 20.0%
!!! ATTATACACAATGATTTTGT+TGG - chr5.4:67883519-67883538 None:intergenic 20.0%
!!! GAACCTTAGAAATTTTTTTA+TGG - chr5.4:67883482-67883501 None:intergenic 20.0%
!!! TACAGTTATTTTCTCATTTA+GGG - chr5.4:67885825-67885844 None:intergenic 20.0%
!!! TGTATAATTTTTGTTTGTTC+AGG + chr5.4:67883531-67883550 MS.gene070491:intron 20.0%
!!! TGTATTGTATTGTATTCTTT+TGG + chr5.4:67885034-67885053 MS.gene070491:intron 20.0%
!!! TTCTAAGGTTCAATTTTATT+TGG + chr5.4:67883491-67883510 MS.gene070491:intron 20.0%
! AACAAGAACCTATACAATTA+TGG - chr5.4:67883335-67883354 None:intergenic 25.0%
! AAGTCATTAACAAAGTTTCA+AGG - chr5.4:67883292-67883311 None:intergenic 25.0%
! ACGAATTCATGCAAATAAAA+TGG + chr5.4:67883963-67883982 MS.gene070491:intron 25.0%
! ATTGTGAATGAAGTCAAAAT+TGG + chr5.4:67886370-67886389 MS.gene070491:CDS 25.0%
! CGAGGAATAATTTATAGATA+AGG + chr5.4:67885428-67885447 MS.gene070491:intron 25.0%
! CTATGCTAATATATCAACAT+TGG - chr5.4:67885346-67885365 None:intergenic 25.0%
! GAAGTCCTTTAACTATTATT+TGG + chr5.4:67884570-67884589 MS.gene070491:CDS 25.0%
! GAGATTTAATCTATCTTCAT+TGG + chr5.4:67885503-67885522 MS.gene070491:intron 25.0%
! GTAAGTTAGATTACTTCTAT+TGG + chr5.4:67886227-67886246 MS.gene070491:CDS 25.0%
! TATAGATTCAAAAAACCTCA+AGG + chr5.4:67884548-67884567 MS.gene070491:CDS 25.0%
! TCCTTTAACTATTATTTGGA+GGG + chr5.4:67884574-67884593 MS.gene070491:CDS 25.0%
! TCTGAAAAGTAAAAACACTT+TGG - chr5.4:67884849-67884868 None:intergenic 25.0%
! TTCTACAACCATAATTGTAT+AGG + chr5.4:67883324-67883343 MS.gene070491:intron 25.0%
! TTTCTATGTACACTTTCAAT+GGG + chr5.4:67886124-67886143 MS.gene070491:CDS 25.0%
!! AAACTACAATAAGTGCTTTT+TGG + chr5.4:67885987-67886006 MS.gene070491:CDS 25.0%
!! ACAGTTAGAGTTTTTCATAA+GGG + chr5.4:67886063-67886082 MS.gene070491:CDS 25.0%
!! ATTGTATTCTTTTGGTATCA+TGG + chr5.4:67885042-67885061 MS.gene070491:intron 25.0%
!! TCATTGGAATTTTGTATGAT+AGG + chr5.4:67885519-67885538 MS.gene070491:intron 25.0%
!! TTTTCTATGTACACTTTCAA+TGG + chr5.4:67886123-67886142 MS.gene070491:CDS 25.0%
!! TTTTTCTTGTCTTATCAATG+AGG + chr5.4:67886284-67886303 MS.gene070491:CDS 25.0%
!!! ATTTTTAGAATTGTCTCTGA+GGG + chr5.4:67883861-67883880 MS.gene070491:intron 25.0%
!!! GGTTTTTTGAATCTATACAA+TGG - chr5.4:67884545-67884564 None:intergenic 25.0%
!!! GTACAGTTATTTTCTCATTT+AGG - chr5.4:67885826-67885845 None:intergenic 25.0%
AATTGACACACTTATGTACA+AGG - chr5.4:67884990-67885009 None:intergenic 30.0%
ACAAAGTAAGCAAGAAAAGA+TGG + chr5.4:67886182-67886201 MS.gene070491:CDS 30.0%
ACATTCATGAACAGAAAAGT+TGG + chr5.4:67885734-67885753 MS.gene070491:CDS 30.0%
ACCATAGTTACCAACTTTAT+GGG + chr5.4:67883651-67883670 MS.gene070491:CDS 30.0%
ACCCTCCAAATAATAGTTAA+AGG - chr5.4:67884578-67884597 None:intergenic 30.0%
ATATCTTAAATGATGCTGCA+CGG + chr5.4:67884943-67884962 MS.gene070491:intron 30.0%
ATCATATTCTTCTCTTCCTT+TGG - chr5.4:67884365-67884384 None:intergenic 30.0%
ATTGACACACTTATGTACAA+GGG - chr5.4:67884989-67885008 None:intergenic 30.0%
ATTTGACACAAATGATCCAA+AGG + chr5.4:67884346-67884365 MS.gene070491:CDS 30.0%
CAATACAACCACTGAAAATA+AGG - chr5.4:67884429-67884448 None:intergenic 30.0%
CGAAAATTACCATAATTTCG+AGG + chr5.4:67885410-67885429 MS.gene070491:intron 30.0%
GCACTTTATACAATAGCTTT+AGG + chr5.4:67884278-67884297 MS.gene070491:CDS 30.0%
GCTGAAAGAATATGTGTTAT+GGG + chr5.4:67883564-67883583 MS.gene070491:CDS 30.0%
GTCCTTTAACTATTATTTGG+AGG + chr5.4:67884573-67884592 MS.gene070491:CDS 30.0%
GTTTATGTTCAAGACAATGT+AGG + chr5.4:67884449-67884468 MS.gene070491:CDS 30.0%
TACCATAGTTACCAACTTTA+TGG + chr5.4:67883650-67883669 MS.gene070491:CDS 30.0%
TATCGTTGAGAAAGAAAGAA+GGG + chr5.4:67885946-67885965 MS.gene070491:CDS 30.0%
TCACATATACAGACAAATTC+AGG + chr5.4:67884678-67884697 MS.gene070491:CDS 30.0%
TGATATAGCTTAAACGAAAG+TGG + chr5.4:67883935-67883954 MS.gene070491:intron 30.0%
TGATTCATTCTTCTCAAGTT+AGG + chr5.4:67885131-67885150 MS.gene070491:intron 30.0%
TGCTGAAAGAATATGTGTTA+TGG + chr5.4:67883563-67883582 MS.gene070491:CDS 30.0%
TTCAAGATAACCATTGAGTA+AGG - chr5.4:67884651-67884670 None:intergenic 30.0%
TTGAAGAGTAATCTTGACAA+GGG + chr5.4:67886205-67886224 MS.gene070491:CDS 30.0%
TTTAAGCTATATCAGCTTAG+TGG - chr5.4:67883929-67883948 None:intergenic 30.0%
! AATATTTTCGGATAGATGCA+TGG + chr5.4:67885208-67885227 MS.gene070491:intron 30.0%
! CATTTTCTCTATTGTTGCAA+TGG + chr5.4:67885913-67885932 MS.gene070491:CDS 30.0%
! CTCAGAGACAATTCTAAAAA+TGG - chr5.4:67883862-67883881 None:intergenic 30.0%
! GACAGTTAGAGTTTTTCATA+AGG + chr5.4:67886062-67886081 MS.gene070491:CDS 30.0%
! GTACATAAGTGTGTCAATTT+TGG + chr5.4:67884991-67885010 MS.gene070491:intron 30.0%
! TGAGTGATTTTTCTTGCTAA+AGG - chr5.4:67885848-67885867 None:intergenic 30.0%
! TGTCTTCGGACTAATATTTT+CGG + chr5.4:67885196-67885215 MS.gene070491:intron 30.0%
!! CTTATTTTCAGTGGTTGTAT+TGG + chr5.4:67884427-67884446 MS.gene070491:CDS 30.0%
!! CTTTATACAATAGCTTTAGG+TGG + chr5.4:67884281-67884300 MS.gene070491:CDS 30.0%
!! TAGCTTATTGGTTTCAATTG+TGG + chr5.4:67886159-67886178 MS.gene070491:CDS 30.0%
!! TCAAGTTGAGGAAGTTAAAA+TGG + chr5.4:67885625-67885644 MS.gene070491:CDS 30.0%
!!! CATTTTTAGAATTGTCTCTG+AGG + chr5.4:67883860-67883879 MS.gene070491:intron 30.0%
!!! TATTGGATCCTTATTTTCAG+TGG + chr5.4:67884418-67884437 MS.gene070491:CDS 30.0%
!!! TATTTGGAGGGTTTTGTTTT+TGG + chr5.4:67884586-67884605 MS.gene070491:CDS 30.0%
!!! TTTTTAGAATTGTCTCTGAG+GGG + chr5.4:67883862-67883881 MS.gene070491:intron 30.0%
AAAATCACTCACAATCCTCA+AGG + chr5.4:67885857-67885876 MS.gene070491:CDS 35.0%
AAATTGAACGAGAATCGCAT+AGG + chr5.4:67885377-67885396 MS.gene070491:intron 35.0%
AAATTGACACCTCATAGACT+CGG + chr5.4:67885312-67885331 MS.gene070491:intron 35.0%
AACTTAGTGACATACTTGGT+TGG + chr5.4:67883597-67883616 MS.gene070491:CDS 35.0%
AATTGAACGAGAATCGCATA+GGG + chr5.4:67885378-67885397 MS.gene070491:intron 35.0%
ACAAAACAAAAACTGGAGGA+TGG + chr5.4:67883422-67883441 MS.gene070491:CDS 35.0%
ACAATTGTTGTGTTGCAACA+GGG + chr5.4:67884131-67884150 MS.gene070491:intron 35.0%
AGATAACCATTGAGTAAGGT+AGG - chr5.4:67884647-67884666 None:intergenic 35.0%
AGGATGAAATCTATGAGTAC+TGG + chr5.4:67886097-67886116 MS.gene070491:CDS 35.0%
AGTATGCATGTTGACCAAAT+GGG - chr5.4:67885665-67885684 None:intergenic 35.0%
ATAGTTAAAGGACTTCCTTG+AGG - chr5.4:67884566-67884585 None:intergenic 35.0%
ATTAGTCCGAAGACAATGAA+GGG - chr5.4:67885191-67885210 None:intergenic 35.0%
CAAGTATGTCACTAAGTTCA+TGG - chr5.4:67883595-67883614 None:intergenic 35.0%
CAATGGTTATCTTGAAGCTA+AGG + chr5.4:67884655-67884674 MS.gene070491:CDS 35.0%
CATGAACTTAGTGACATACT+TGG + chr5.4:67883593-67883612 MS.gene070491:CDS 35.0%
CCTAGATGAAACAAACTCAA+AGG + chr5.4:67885562-67885581 MS.gene070491:CDS 35.0%
CTATCGTTGAGAAAGAAAGA+AGG + chr5.4:67885945-67885964 MS.gene070491:CDS 35.0%
GATGAAACAAACTCAAAGGA+CGG + chr5.4:67885566-67885585 MS.gene070491:CDS 35.0%
GATGATGAGAAAAGCTGATA+AGG - chr5.4:67885783-67885802 None:intergenic 35.0%
GGAATAAAATCCAATGTGTC+AGG + chr5.4:67884308-67884327 MS.gene070491:CDS 35.0%
GTAAACCAAAAGAAACACTG+TGG + chr5.4:67885477-67885496 MS.gene070491:intron 35.0%
GTAGTCAGTAACAATACTTC+AGG - chr5.4:67884101-67884120 None:intergenic 35.0%
GTCATTGTTGAAACTAACCA+TGG - chr5.4:67885605-67885624 None:intergenic 35.0%
GTTGAAGAGTAATCTTGACA+AGG + chr5.4:67886204-67886223 MS.gene070491:CDS 35.0%
TAATCAAACTCCTTCCCATT+TGG + chr5.4:67885648-67885667 MS.gene070491:CDS 35.0%
TACATGTGTCTCTATCGTTT+CGG + chr5.4:67884056-67884075 MS.gene070491:intron 35.0%
TAGGTTCTTGTTGCAAGTAA+TGG + chr5.4:67883343-67883362 MS.gene070491:intron 35.0%
TATTAGTCCGAAGACAATGA+AGG - chr5.4:67885192-67885211 None:intergenic 35.0%
TCTCATTTAGGGAAGTAAAG+AGG - chr5.4:67885814-67885833 None:intergenic 35.0%
! AAATCCAATGTGTCAGGTTT+TGG + chr5.4:67884314-67884333 MS.gene070491:CDS 35.0%
! AAATTTTACCACTGTGGCTA+TGG - chr5.4:67883760-67883779 None:intergenic 35.0%
! CCTTTGAGTTTGTTTCATCT+AGG - chr5.4:67885565-67885584 None:intergenic 35.0%
! GCAAGTAATGGAGAGAAAAA+AGG + chr5.4:67883355-67883374 MS.gene070491:CDS 35.0%
! TCTTTCCACAGTGTTTCTTT+TGG - chr5.4:67885485-67885504 None:intergenic 35.0%
! TTCAACAATGACTCAAGTTG+AGG + chr5.4:67885613-67885632 MS.gene070491:CDS 35.0%
!! CAAAATTGGTGTTGATGGAA+AGG + chr5.4:67886384-67886403 MS.gene070491:CDS 35.0%
!! GAAGTCAAAATTGGTGTTGA+TGG + chr5.4:67886379-67886398 MS.gene070491:CDS 35.0%
!! TATACAATAGCTTTAGGTGG+TGG + chr5.4:67884284-67884303 MS.gene070491:CDS 35.0%
!! TCCCATAAAGTTGGTAACTA+TGG - chr5.4:67883655-67883674 None:intergenic 35.0%
!! TTTCTAGCTGATGCAAAACT+TGG + chr5.4:67883705-67883724 MS.gene070491:CDS 35.0%
!!! CAGTTTTTGTTTTGTCAGCT+GGG - chr5.4:67883417-67883436 None:intergenic 35.0%
!!! GTACCTCAGTTTTTTCTAGT+TGG + chr5.4:67886013-67886032 MS.gene070491:CDS 35.0%
AAGACAATGTAGGAAGAGGT+TGG + chr5.4:67884459-67884478 MS.gene070491:CDS 40.0%
AAGGACTCACAAGTCTTCAA+AGG + chr5.4:67885876-67885895 MS.gene070491:CDS 40.0%
AATCTCGTAACCTCAAGAGA+CGG - chr5.4:67883897-67883916 None:intergenic 40.0%
AATTTCAGCAGGGACAATGT+TGG + chr5.4:67884490-67884509 MS.gene070491:CDS 40.0%
ACGGAAACAACGAAAATCCA+TGG + chr5.4:67885585-67885604 MS.gene070491:CDS 40.0%
ACGGATATTCTGTCTTGCTT+TGG + chr5.4:67884962-67884981 MS.gene070491:intron 40.0%
AGACAATGTAGGAAGAGGTT+GGG + chr5.4:67884460-67884479 MS.gene070491:CDS 40.0%
AGATCCAAAACCTGACACAT+TGG - chr5.4:67884321-67884340 None:intergenic 40.0%
AGGACTCACAAGTCTTCAAA+GGG + chr5.4:67885877-67885896 MS.gene070491:CDS 40.0%
AGTCTTCAAAGGGTAGGAAT+TGG + chr5.4:67885887-67885906 MS.gene070491:CDS 40.0%
CCAGCTGACAAAACAAAAAC+TGG + chr5.4:67883415-67883434 MS.gene070491:CDS 40.0%
CTAGATGCTATAGAAGAGTC+AGG - chr5.4:67885087-67885106 None:intergenic 40.0%
CTCATAGATTTCATCCTCTC+AGG - chr5.4:67886094-67886113 None:intergenic 40.0%
CTTAAGACCATAGCACTTGA+TGG + chr5.4:67885160-67885179 MS.gene070491:intron 40.0%
GACAATTGTTGTGTTGCAAC+AGG + chr5.4:67884130-67884149 MS.gene070491:intron 40.0%
GAGTATGCATGTTGACCAAA+TGG - chr5.4:67885666-67885685 None:intergenic 40.0%
GAGTTGTTCAACGACCATTA+CGG - chr5.4:67885235-67885254 None:intergenic 40.0%
GCACCAACTAGAAAAAACTG+AGG - chr5.4:67886019-67886038 None:intergenic 40.0%
GCATATCCCTTCATTGTCTT+CGG + chr5.4:67885182-67885201 MS.gene070491:intron 40.0%
GCTGACAAAACAAAAACTGG+AGG + chr5.4:67883418-67883437 MS.gene070491:CDS 40.0%
GGGTGTGTGTATGTTAACTT+TGG + chr5.4:67884151-67884170 MS.gene070491:intron 40.0%
GTTCAAGACAATGTAGGAAG+AGG + chr5.4:67884455-67884474 MS.gene070491:CDS 40.0%
GTTGAGAGTTCCCATAAAGT+TGG - chr5.4:67883664-67883683 None:intergenic 40.0%
TAGGGAAGTAAAGAGGAGAA+TGG - chr5.4:67885807-67885826 None:intergenic 40.0%
TCTGATCCTACCTTACTCAA+TGG + chr5.4:67884638-67884657 MS.gene070491:CDS 40.0%
TGAGTAAGGTAGGATCAGAA+GGG - chr5.4:67884637-67884656 None:intergenic 40.0%
TGTCTTCTTACTTCACTGCA+TGG - chr5.4:67884206-67884225 None:intergenic 40.0%
TTGAGTAAGGTAGGATCAGA+AGG - chr5.4:67884638-67884657 None:intergenic 40.0%
! GCCACAGTGGTAAAATTTTC+AGG + chr5.4:67883762-67883781 MS.gene070491:intron 40.0%
! GCCTGAAAATTTTACCACTG+TGG - chr5.4:67883766-67883785 None:intergenic 40.0%
! GGAGAAGCTTTTGCTTATGT+TGG + chr5.4:67886040-67886059 MS.gene070491:CDS 40.0%
! GGTCAACATGCATACTCTTT+TGG + chr5.4:67885669-67885688 MS.gene070491:CDS 40.0%
! TATTGGTTGCTAGCAGTTCT+TGG + chr5.4:67886244-67886263 MS.gene070491:CDS 40.0%
!! GCAGTTGGTATTTTGCTTTG+TGG + chr5.4:67884515-67884534 MS.gene070491:CDS 40.0%
!! TGTAGCTTGCTCAATTGTGA+AGG - chr5.4:67885717-67885736 None:intergenic 40.0%
!!! CAGTTTTTTCTAGTTGGTGC+TGG + chr5.4:67886019-67886038 MS.gene070491:CDS 40.0%
!!! CCAGTTTTTGTTTTGTCAGC+TGG - chr5.4:67883418-67883437 None:intergenic 40.0%
!!! TGTTTTTGGCTTGGAAGAAG+AGG + chr5.4:67884600-67884619 MS.gene070491:CDS 40.0%
AAAGCTGATAAGGATCCTGC+TGG - chr5.4:67885773-67885792 None:intergenic 45.0%
AAGGTAGGATCAGAAGGGAT+AGG - chr5.4:67884632-67884651 None:intergenic 45.0%
CAGCTAGAAAACCACCAAGA+AGG - chr5.4:67883695-67883714 None:intergenic 45.0%
CATCAGTGCATTCAAGCAAG+TGG + chr5.4:67884230-67884249 MS.gene070491:CDS 45.0%
CTAGCAGCAGGACTAATCTT+AGG + chr5.4:67883445-67883464 MS.gene070491:CDS 45.0%
CTCACAAGTCTTCAAAGGGT+AGG + chr5.4:67885881-67885900 MS.gene070491:CDS 45.0%
CTTCTTACTTCACTGCATGG+TGG - chr5.4:67884203-67884222 None:intergenic 45.0%
GACAATGTAGGAAGAGGTTG+GGG + chr5.4:67884461-67884480 MS.gene070491:CDS 45.0%
GATAGATGCATGGACCGTAA+TGG + chr5.4:67885218-67885237 MS.gene070491:intron 45.0%
GATTTGAACTCCGTCTCTTG+AGG + chr5.4:67883884-67883903 MS.gene070491:intron 45.0%
GGATATGCCATCAAGTGCTA+TGG - chr5.4:67885170-67885189 None:intergenic 45.0%
GGGGATATGGAATTTCAGCA+GGG + chr5.4:67884480-67884499 MS.gene070491:CDS 45.0%
TGAAGACTTGTGAGTCCTTG+AGG - chr5.4:67885875-67885894 None:intergenic 45.0%
TGCATGTTGACCAAATGGGA+AGG - chr5.4:67885661-67885680 None:intergenic 45.0%
TGGGGATATGGAATTTCAGC+AGG + chr5.4:67884479-67884498 MS.gene070491:CDS 45.0%
TGTGGCTATGGTTGCAGATA+TGG - chr5.4:67883748-67883767 None:intergenic 45.0%
! ATGGGAACTCTCAACTTGCT+TGG + chr5.4:67883669-67883688 MS.gene070491:CDS 45.0%
! CTTCAGGTTAAAAGCGTGTC+TGG - chr5.4:67884085-67884104 None:intergenic 45.0%
!! ACAATAGCTTTAGGTGGTGG+AGG + chr5.4:67884287-67884306 MS.gene070491:CDS 45.0%
!! CTAGGATTGCTGCTTTGTCA+AGG - chr5.4:67885547-67885566 None:intergenic 45.0%
!!! GGAGGGTTTTGTTTTTGGCT+TGG + chr5.4:67884591-67884610 MS.gene070491:CDS 45.0%
AGGCACAGAAGACAATGCTG+CGG + chr5.4:67883375-67883394 MS.gene070491:CDS 50.0%
ATCTGCAACCATAGCCACAG+TGG + chr5.4:67883749-67883768 MS.gene070491:CDS 50.0%
CTTACTTCACTGCATGGTGG+AGG - chr5.4:67884200-67884219 None:intergenic 50.0%
GACTAGTAGCCGAGTCTATG+AGG - chr5.4:67885324-67885343 None:intergenic 50.0%
GGATCACTAGAGATTCCAGC+AGG + chr5.4:67885755-67885774 MS.gene070491:CDS 50.0%
GTAGGAAGAGGTTGGGGATA+TGG + chr5.4:67884467-67884486 MS.gene070491:CDS 50.0%
TGGTAGCAGAGCTAGCTGAA+TGG - chr5.4:67883635-67883654 None:intergenic 50.0%
! AACTTGCTTGGCCTTCTTGG+TGG + chr5.4:67883681-67883700 MS.gene070491:CDS 50.0%
! CTCAACTTGCTTGGCCTTCT+TGG + chr5.4:67883678-67883697 MS.gene070491:CDS 50.0%
!! AATGCTGCGGTCGATTTTCG+AGG + chr5.4:67883388-67883407 MS.gene070491:CDS 50.0%
!! CATGGTGGAGGTGTCATACT+AGG - chr5.4:67884188-67884207 None:intergenic 50.0%
!! GGGACAATGTTGGTAGCAGT+TGG + chr5.4:67884500-67884519 MS.gene070491:CDS 50.0%
!! TCATAAGGGAAGCACCTGAG+AGG + chr5.4:67886077-67886096 MS.gene070491:CDS 50.0%
ACTGGAGGATGGCTAGCAGC+AGG + chr5.4:67883433-67883452 MS.gene070491:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 67883239 67886417 67883239 ID=MS.gene070491
chr5.4 mRNA 67883239 67886417 67883239 ID=MS.gene070491.t1;Parent=MS.gene070491
chr5.4 exon 67883239 67883241 67883239 ID=MS.gene070491.t1.exon1;Parent=MS.gene070491.t1
chr5.4 CDS 67883239 67883241 67883239 ID=cds.MS.gene070491.t1;Parent=MS.gene070491.t1
chr5.4 exon 67883346 67883466 67883346 ID=MS.gene070491.t1.exon2;Parent=MS.gene070491.t1
chr5.4 CDS 67883346 67883466 67883346 ID=cds.MS.gene070491.t1;Parent=MS.gene070491.t1
chr5.4 exon 67883553 67883770 67883553 ID=MS.gene070491.t1.exon3;Parent=MS.gene070491.t1
chr5.4 CDS 67883553 67883770 67883553 ID=cds.MS.gene070491.t1;Parent=MS.gene070491.t1
chr5.4 exon 67884152 67884699 67884152 ID=MS.gene070491.t1.exon4;Parent=MS.gene070491.t1
chr5.4 CDS 67884152 67884699 67884152 ID=cds.MS.gene070491.t1;Parent=MS.gene070491.t1
chr5.4 exon 67885541 67886417 67885541 ID=MS.gene070491.t1.exon5;Parent=MS.gene070491.t1
chr5.4 CDS 67885541 67886417 67885541 ID=cds.MS.gene070491.t1;Parent=MS.gene070491.t1
Gene Sequence

>MS.gene070491

ATGGTATTCATTTCATCTTATAGAATTTTTGTACTTGTTCAAAGTTCAAACCTTGAAACTTTGTTAATGACTTAATTTTTTTTGTTTCTACAACCATAATTGTATAGGTTCTTGTTGCAAGTAATGGAGAGAAAAAAGGCACAGAAGACAATGCTGCGGTCGATTTTCGAGGTCACCCAGCTGACAAAACAAAAACTGGAGGATGGCTAGCAGCAGGACTAATCTTAGGTTCATTTTAATCCATAAAAAAATTTCTAAGGTTCAATTTTATTTGGTTCCAACAAAATCATTGTGTATAATTTTTGTTTGTTCAGGTACTGAACTTGCTGAAAGAATATGTGTTATGGGAATTTCCATGAACTTAGTGACATACTTGGTTGGAGATTTACATCTCCATTCAGCTAGCTCTGCTACCATAGTTACCAACTTTATGGGAACTCTCAACTTGCTTGGCCTTCTTGGTGGTTTTCTAGCTGATGCAAAACTTGGCAGATACTTAACTGTTGCCATATCTGCAACCATAGCCACAGTGGTAAAATTTTCAGGCTTTCAATATTTTTATAAACTACTATGGAAGTTGTATTCACAATTATTATTATTAATTAATCTAGTACTAATGACCATTTTTAGAATTGTCTCTGAGGGGATTTGAACTCCGTCTCTTGAGGTTACGAGATTGTGTTCTTACCACTAAGCTGATATAGCTTAAACGAAAGTGGCATTCACGAATTCATGCAAATAAAATGGTAATAATTTATAGAAACTGTCACGTAGATACAAGTAATAATTTAAAAAAATAGAAGAAATTGAAAGTAACTACATGTGTCTCTATCGTTTCGGACACCAGACACGCTTTTAACCTGAAGTATTGTTACTGACTACTTTTTTCTTGACAATTGTTGTGTTGCAACAGGGTGTGTGTATGTTAACTTTGGCTACAACAATTCCTAGTATGACACCTCCACCATGCAGTGAAGTAAGAAGACAACATCATCAGTGCATTCAAGCAAGTGGCAAACAGTTAGCACTTCTCTTTGCAGCACTTTATACAATAGCTTTAGGTGGTGGAGGAATAAAATCCAATGTGTCAGGTTTTGGATCTGATCAATTTGACACAAATGATCCAAAGGAAGAGAAGAATATGATATTTTTCTTCAACAGATTCTACTTTTTTATAAGTATTGGATCCTTATTTTCAGTGGTTGTATTGGTTTATGTTCAAGACAATGTAGGAAGAGGTTGGGGATATGGAATTTCAGCAGGGACAATGTTGGTAGCAGTTGGTATTTTGCTTTGTGGTACTCCATTGTATAGATTCAAAAAACCTCAAGGAAGTCCTTTAACTATTATTTGGAGGGTTTTGTTTTTGGCTTGGAAGAAGAGGACTCTTCCTATCCCTTCTGATCCTACCTTACTCAATGGTTATCTTGAAGCTAAGGTCACATATACAGACAAATTCAGGTATTTGTCTTCATTCTTGTAAAAGCTGTGAATAGTAGTGTTAGTTAGAACATCATGATTACACTTCTTTTCAATTATTGAACACTAACTAATCACTTAATCACTTTAACTGATTTATCATACTTATTACTATTTATTGGGGGTAGCCAAAGTGTTTTTACTTTTCAGAAATTATGTTATCTTTTTATGACTCATTTCTAGAAAAAGACAAACTATAATTGATTGATCAGCAATCTATCAAAAATATCTTAAATGATGCTGCACGGATATTCTGTCTTGCTTTGGTCCCTTGTACATAAGTGTGTCAATTTTGGTCTTTTGAATTGTATTGTATTGTATTGTATTGTATTCTTTTGGTATCATGGAGAATCAAATCTGATTTTTCCTGACTCTTCTATAGCATCTAGAATTGTATCTTGAAACTATTTATGTGATTCATTCTTCTCAAGTTAGGATCTAGCTTAAGACCATAGCACTTGATGGCATATCCCTTCATTGTCTTCGGACTAATATTTTCGGATAGATGCATGGACCGTAATGGTCGTTGAACAACTCTCTCTAAGAGAACTTGAACTTTATCGCTTGAGATTATAATATCAGACGCTTAACACTAAATTGACACCTCATAGACTCGGCTACTAGTCCAATGTTGATATATTAGCATAGATGATAAGCAAAAATTGAACGAGAATCGCATAGGGTATCTAAAGCGAAAATTACCATAATTTCGAGGAATAATTTATAGATAAGGTGTCGATAATGATAATCTAGAAAATGGTAAACCAAAAGAAACACTGTGGAAAGAGATTTAATCTATCTTCATTGGAATTTTGTATGATAGGTACCTTGACAAAGCAGCAATCCTAGATGAAACAAACTCAAAGGACGGAAACAACGAAAATCCATGGTTAGTTTCAACAATGACTCAAGTTGAGGAAGTTAAAATGGTAATCAAACTCCTTCCCATTTGGTCAACATGCATACTCTTTTGGACAGTTTATTCTCAAATGAACACCTTCACAATTGAGCAAGCTACATTCATGAACAGAAAAGTTGGATCACTAGAGATTCCAGCAGGATCCTTATCAGCTTTTCTCATCATCACCATTCTCCTCTTTACTTCCCTAAATGAGAAAATAACTGTACCTTTAGCAAGAAAAATCACTCACAATCCTCAAGGACTCACAAGTCTTCAAAGGGTAGGAATTGGACTCATTTTCTCTATTGTTGCAATGGTAGTTTCTGCTATCGTTGAGAAAGAAAGAAGGGACAATGCAGTTAAAAAACAAACTACAATAAGTGCTTTTTGGCTTGTACCTCAGTTTTTTCTAGTTGGTGCTGGAGAAGCTTTTGCTTATGTTGGACAGTTAGAGTTTTTCATAAGGGAAGCACCTGAGAGGATGAAATCTATGAGTACTGGTCTTTTTCTATGTACACTTTCAATGGGATATTTTGTTAGTAGCTTATTGGTTTCAATTGTGGACAAAGTAAGCAAGAAAAGATGGTTGAAGAGTAATCTTGACAAGGGTAAGTTAGATTACTTCTATTGGTTGCTAGCAGTTCTTGGAGTGCTGAATTTTTTACTTTTTCTTGTCTTATCAATGAGGCATCAATACAAAGTTCAACACAACAATATTGAGAGTAATGACAATGTAGAGAAAGAGCTTGTGATTGTGAATGAAGTCAAAATTGGTGTTGATGGAAAGGAAGAAGCATAG

Protein sequence

>MS.gene070491.t1

MVLVASNGEKKGTEDNAAVDFRGHPADKTKTGGWLAAGLILGTELAERICVMGISMNLVTYLVGDLHLHSASSATIVTNFMGTLNLLGLLGGFLADAKLGRYLTVAISATIATVGVCMLTLATTIPSMTPPPCSEVRRQHHQCIQASGKQLALLFAALYTIALGGGGIKSNVSGFGSDQFDTNDPKEEKNMIFFFNRFYFFISIGSLFSVVVLVYVQDNVGRGWGYGISAGTMLVAVGILLCGTPLYRFKKPQGSPLTIIWRVLFLAWKKRTLPIPSDPTLLNGYLEAKVTYTDKFRYLDKAAILDETNSKDGNNENPWLVSTMTQVEEVKMVIKLLPIWSTCILFWTVYSQMNTFTIEQATFMNRKVGSLEIPAGSLSAFLIITILLFTSLNEKITVPLARKITHNPQGLTSLQRVGIGLIFSIVAMVVSAIVEKERRDNAVKKQTTISAFWLVPQFFLVGAGEAFAYVGQLEFFIREAPERMKSMSTGLFLCTLSMGYFVSSLLVSIVDKVSKKRWLKSNLDKGKLDYFYWLLAVLGVLNFLLFLVLSMRHQYKVQHNNIESNDNVEKELVIVNEVKIGVDGKEEA