Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061341.t1 | XP_013443746.1 | 93.8 | 565 | 34 | 1 | 16 | 580 | 1 | 564 | 0.00E+00 | 1084.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061341.t1 | Q9M219 | 46.7 | 544 | 283 | 3 | 36 | 578 | 17 | 554 | 5.4e-144 | 512.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061341.t1 | A0A072TKN3 | 93.8 | 565 | 34 | 1 | 16 | 580 | 1 | 564 | 0.0e+00 | 1084.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene061341.t1 | TR | mTERF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene061341 | 0.80936 | 1.97E-50 | -1.69E-46 |
| MS.gene049382 | MS.gene061341 | 0.800255 | 1.57E-48 | -1.69E-46 |
| MS.gene052896 | MS.gene061341 | 0.813161 | 2.94E-51 | -1.69E-46 |
| MS.gene054467 | MS.gene061341 | 0.836151 | 1.11E-56 | -1.69E-46 |
| MS.gene055358 | MS.gene061341 | 0.802842 | 4.63E-49 | -1.69E-46 |
| MS.gene055363 | MS.gene061341 | 0.831834 | 1.33E-55 | -1.69E-46 |
| MS.gene057915 | MS.gene061341 | 0.801226 | 9.95E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene061341 | 0.805193 | 1.50E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene061341 | 0.832345 | 9.97E-56 | -1.69E-46 |
| MS.gene060685 | MS.gene061341 | 0.835039 | 2.12E-56 | -1.69E-46 |
| MS.gene060998 | MS.gene061341 | 0.808521 | 2.97E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061341.t1 | MTR_8g005155 | 93.805 | 565 | 34 | 1 | 16 | 580 | 1 | 564 | 0.0 | 1088 |
| MS.gene061341.t1 | MTR_7g080620 | 53.413 | 586 | 252 | 6 | 4 | 577 | 5 | 581 | 0.0 | 634 |
| MS.gene061341.t1 | MTR_5g084810 | 25.758 | 528 | 371 | 9 | 45 | 568 | 65 | 575 | 8.20e-53 | 190 |
| MS.gene061341.t1 | MTR_7g093000 | 26.079 | 556 | 365 | 13 | 38 | 570 | 29 | 561 | 6.80e-50 | 181 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061341.t1 | AT3G60400 | 46.691 | 544 | 283 | 3 | 36 | 578 | 17 | 554 | 5.56e-179 | 517 |
| MS.gene061341.t1 | AT4G19650 | 26.476 | 525 | 351 | 8 | 54 | 568 | 85 | 584 | 1.21e-51 | 187 |
| MS.gene061341.t1 | AT4G19650 | 25.447 | 503 | 340 | 8 | 76 | 568 | 90 | 567 | 3.22e-44 | 166 |
| MS.gene061341.t1 | AT5G06810 | 25.095 | 526 | 351 | 13 | 56 | 567 | 78 | 574 | 4.99e-39 | 151 |
| MS.gene061341.t1 | AT5G06811 | 23.842 | 583 | 394 | 12 | 15 | 567 | 8 | 570 | 6.56e-38 | 148 |
| MS.gene061341.t1 | AT5G45113 | 22.062 | 417 | 303 | 8 | 157 | 568 | 7 | 406 | 5.43e-21 | 96.3 |
Find 102 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGTGTGCTTTGTGAATT+TGG | 0.075830 | 8.2:+83356281 | MS.gene061341:CDS |
| TCTCTAGAGTTTCAGGATTT+TGG | 0.108976 | 8.2:-83357261 | None:intergenic |
| TTTGATTGCCTTCTACATTT+AGG | 0.135769 | 8.2:+83357184 | MS.gene061341:CDS |
| TGGAACAGAAATGTCGTTTA+AGG | 0.220611 | 8.2:-83355266 | None:intergenic |
| GGGACACTCCTTAGAGCTTT+TGG | 0.239993 | 8.2:+83357312 | MS.gene061341:CDS |
| TAATTTCCTATGTCAGGATA+TGG | 0.244795 | 8.2:+83357291 | MS.gene061341:CDS |
| TCATGAAGCTCGAAATTTAT+TGG | 0.254864 | 8.2:-83357539 | None:intergenic |
| AAACATTTGATTCTTGAGTA+TGG | 0.263491 | 8.2:+83356659 | MS.gene061341:CDS |
| TTGATTGCCTTCTACATTTA+GGG | 0.265986 | 8.2:+83357185 | MS.gene061341:CDS |
| GAAAAGTGGTTCTGAGATAA+AGG | 0.272746 | 8.2:+83356358 | MS.gene061341:CDS |
| TTAAATTTCATGCATACTAT+TGG | 0.285045 | 8.2:+83357088 | MS.gene061341:CDS |
| AATTGCTCAAACCAATGTTT+TGG | 0.304518 | 8.2:-83357511 | None:intergenic |
| CTTTGTTTGTTGAAAAGATA+TGG | 0.308280 | 8.2:+83356386 | MS.gene061341:CDS |
| CATGAAGCTCGAAATTTATT+GGG | 0.313412 | 8.2:-83357538 | None:intergenic |
| ACCTTTATCATGCTCTTCAT+TGG | 0.329479 | 8.2:-83357005 | None:intergenic |
| CTCTAATCTCATTTCGAAGT+TGG | 0.332216 | 8.2:+83355455 | MS.gene061341:CDS |
| TTCATGCATACTATTGGCTT+TGG | 0.365567 | 8.2:+83357094 | MS.gene061341:CDS |
| CATGTGATTTAAGATATTCA+TGG | 0.366992 | 8.2:-83357131 | None:intergenic |
| CCCAATGAAGAGCATGATAA+AGG | 0.371844 | 8.2:+83357004 | MS.gene061341:CDS |
| ATCTGAACCTCGGCTTAATT+CGG | 0.372746 | 8.2:-83357372 | None:intergenic |
| TAAGCTTGGTGTGATTTATA+CGG | 0.375925 | 8.2:+83356316 | MS.gene061341:CDS |
| TCTAATCTCATTTCGAAGTT+GGG | 0.376202 | 8.2:+83355456 | MS.gene061341:CDS |
| GGAGTTGTTGAGTCTCAATT+TGG | 0.376264 | 8.2:+83356769 | MS.gene061341:CDS |
| ATAGGTTGCTTTCTGATTTG+AGG | 0.388560 | 8.2:+83356498 | MS.gene061341:CDS |
| CCTTTATCATGCTCTTCATT+GGG | 0.406357 | 8.2:-83357004 | None:intergenic |
| AAAGATTAATTTCCTATGTC+AGG | 0.406425 | 8.2:+83357285 | MS.gene061341:CDS |
| CCATATGTGGGCTTTAGAAA+AGG | 0.410319 | 8.2:+83357396 | MS.gene061341:CDS |
| GGGCTATGGGTTTACGTGAA+TGG | 0.411227 | 8.2:+83356921 | MS.gene061341:CDS |
| TTATCGATGATGAGGTTGAT+AGG | 0.413270 | 8.2:+83356480 | MS.gene061341:CDS |
| ATGTTTGGTATGATGTTTGT+AGG | 0.414620 | 8.2:+83356570 | MS.gene061341:CDS |
| TTGTGAATTTGGATTTCCTT+GGG | 0.415023 | 8.2:+83356292 | MS.gene061341:CDS |
| AAAAGTGTCCAAAAGCTCTA+AGG | 0.419374 | 8.2:-83357320 | None:intergenic |
| ATTCAATCCCTAAATGTAGA+AGG | 0.419800 | 8.2:-83357192 | None:intergenic |
| AGTGATGGTAAGGGGAAGAT+AGG | 0.419950 | 8.2:+83356617 | MS.gene061341:CDS |
| ATCTGATCGGCAAAAGCATA+AGG | 0.420610 | 8.2:-83355408 | None:intergenic |
| TTTGTGAATTTGGATTTCCT+TGG | 0.421861 | 8.2:+83356291 | MS.gene061341:CDS |
| GCAACATCACTTTCAATTTG+CGG | 0.422663 | 8.2:-83355236 | None:intergenic |
| CATATGTGGGCTTTAGAAAA+GGG | 0.423473 | 8.2:+83357397 | MS.gene061341:CDS |
| TTCAATTTGCGGTGAAGTGC+AGG | 0.426353 | 8.2:-83355225 | None:intergenic |
| ACCCATAGCCCTCATCAGAT+TGG | 0.427036 | 8.2:-83356909 | None:intergenic |
| CCCAATCTGATGAGGGCTAT+GGG | 0.435992 | 8.2:+83356908 | MS.gene061341:CDS |
| TCGGTTGATTCTACTAGGTT+CGG | 0.440903 | 8.2:+83356748 | MS.gene061341:CDS |
| TTTGTAATGTGCAAATTGTT+GGG | 0.448783 | 8.2:+83356411 | MS.gene061341:CDS |
| GATTTGGGAGGGTGTGTTGA+AGG | 0.450135 | 8.2:+83356539 | MS.gene061341:CDS |
| AATTTCCTATGTCAGGATAT+GGG | 0.450989 | 8.2:+83357292 | MS.gene061341:CDS |
| GGAATGGATTCTAAAGGTCT+TGG | 0.453391 | 8.2:+83356830 | MS.gene061341:CDS |
| AAGAACTATGCTCATGCGTT+GGG | 0.457899 | 8.2:+83356863 | MS.gene061341:CDS |
| AAAAGTGGTTCTGAGATAAA+GGG | 0.465819 | 8.2:+83356359 | MS.gene061341:CDS |
| TTGAAGGGAATGTGGATGTT+TGG | 0.467882 | 8.2:+83356555 | MS.gene061341:CDS |
| AGAAGAGGAGTTGATTGAAA+AGG | 0.470802 | 8.2:+83356682 | MS.gene061341:CDS |
| GGATTTCCTTGGGATAAGCT+TGG | 0.474458 | 8.2:+83356302 | MS.gene061341:CDS |
| CCCATAGCCCTCATCAGATT+GGG | 0.475310 | 8.2:-83356908 | None:intergenic |
| AAACTATTCCATTGCAAGCA+TGG | 0.484064 | 8.2:+83357432 | MS.gene061341:CDS |
| TCCCAATCTGATGAGGGCTA+TGG | 0.486736 | 8.2:+83356907 | MS.gene061341:CDS |
| GATTCTTGAGTATGGAGAAG+AGG | 0.500875 | 8.2:+83356667 | MS.gene061341:CDS |
| CGAGGTTCAGATTCCATATG+TGG | 0.503568 | 8.2:+83357383 | MS.gene061341:CDS |
| ATTTGGGAGGGTGTGTTGAA+GGG | 0.510382 | 8.2:+83356540 | MS.gene061341:CDS |
| GAAGAACTATGCTCATGCGT+TGG | 0.510932 | 8.2:+83356862 | MS.gene061341:CDS |
| AGCATAAGGGATGGATCTTG+TGG | 0.512701 | 8.2:-83355394 | None:intergenic |
| TTATGATTTGAGTGATGGTA+AGG | 0.517430 | 8.2:+83356607 | MS.gene061341:CDS |
| AGGGTGTGTTGAAGGGAATG+TGG | 0.519392 | 8.2:+83356547 | MS.gene061341:CDS |
| GGGAAGATAGGTGAACTCAT+TGG | 0.519466 | 8.2:+83356629 | MS.gene061341:CDS |
| ATTTGCGGTGAAGTGCAGGC+AGG | 0.520172 | 8.2:-83355221 | None:intergenic |
| TAAGGTTGGTGTGATGATGT+TGG | 0.525262 | 8.2:-83355286 | None:intergenic |
| CACATTGGAATGGATTCTAA+AGG | 0.534379 | 8.2:+83356824 | MS.gene061341:CDS |
| CGATCAGATGAATGAATGAA+AGG | 0.541131 | 8.2:+83355187 | None:intergenic |
| ATAGCTCGGTTGATTCTACT+AGG | 0.542532 | 8.2:+83356743 | MS.gene061341:CDS |
| ACCCAGCTGCTCCAAAACAT+TGG | 0.542590 | 8.2:+83357500 | MS.gene061341:CDS |
| CAAGTTTCTTGTGGCGACAA+GGG | 0.543532 | 8.2:-83355329 | None:intergenic |
| TCTGATCGGCAAAAGCATAA+GGG | 0.549804 | 8.2:-83355407 | None:intergenic |
| TTAAGGCAATTCATGATGCA+AGG | 0.553764 | 8.2:+83357041 | MS.gene061341:CDS |
| GCTGTTGAAACACATTGGAA+TGG | 0.554139 | 8.2:+83356814 | MS.gene061341:CDS |
| CGAATCTTCCCAATCTGATG+AGG | 0.559311 | 8.2:+83356900 | MS.gene061341:CDS |
| GCAAGTTTCTTGTGGCGACA+AGG | 0.559841 | 8.2:-83355330 | None:intergenic |
| GTTGCTTTCTGATTTGAGGA+TGG | 0.563718 | 8.2:+83356502 | MS.gene061341:CDS |
| CATGATAAAGGTTATCAAAG+TGG | 0.567037 | 8.2:+83357016 | MS.gene061341:CDS |
| TTTGCGGTGAAGTGCAGGCA+GGG | 0.567208 | 8.2:-83355220 | None:intergenic |
| TTGTAGATTCAGTGTCGAGA+AGG | 0.567935 | 8.2:+83356715 | MS.gene061341:CDS |
| AGTGTCCCATATCCTGACAT+AGG | 0.569168 | 8.2:-83357297 | None:intergenic |
| AGTCGCAACCATGCTTGCAA+TGG | 0.573982 | 8.2:-83357440 | None:intergenic |
| GGTGTGATTTATACGGAGAG+TGG | 0.575450 | 8.2:+83356323 | MS.gene061341:CDS |
| ATGATTTGAGTGATGGTAAG+GGG | 0.577556 | 8.2:+83356609 | MS.gene061341:CDS |
| AATATCTTAAATCACATGCA+TGG | 0.582398 | 8.2:+83357136 | MS.gene061341:CDS |
| AATTTACTCATATTGTGAGA+CGG | 0.584295 | 8.2:-83357067 | None:intergenic |
| TATGATTTGAGTGATGGTAA+GGG | 0.587020 | 8.2:+83356608 | MS.gene061341:CDS |
| AAGGGATGGATCTTGTGGAA+TGG | 0.590760 | 8.2:-83355389 | None:intergenic |
| CATGGTTGCGACTAGTGACA+AGG | 0.592546 | 8.2:+83357450 | MS.gene061341:CDS |
| TAGATTCAGTGTCGAGAAGG+AGG | 0.595864 | 8.2:+83356718 | MS.gene061341:CDS |
| ATCGGCAAAAGCATAAGGGA+TGG | 0.596160 | 8.2:-83355403 | None:intergenic |
| GTGACACTGCAAGTTTCTTG+TGG | 0.612434 | 8.2:-83355338 | None:intergenic |
| TTGAAGCTGTTGAAACACAT+TGG | 0.621474 | 8.2:+83356809 | MS.gene061341:CDS |
| GAATCTTCCCAATCTGATGA+GGG | 0.621938 | 8.2:+83356901 | MS.gene061341:CDS |
| ATCACACCAAGCTTATCCCA+AGG | 0.624221 | 8.2:-83356308 | None:intergenic |
| CACATATGGAATCTGAACCT+CGG | 0.628454 | 8.2:-83357382 | None:intergenic |
| AGATAGGTGAACTCATTGGA+AGG | 0.629844 | 8.2:+83356633 | MS.gene061341:CDS |
| AAGTCAAAACATATAAACGC+CGG | 0.641278 | 8.2:-83357343 | None:intergenic |
| AAAACTCAAACTCATTGATG+GGG | 0.654476 | 8.2:-83356163 | None:intergenic |
| GTGGTTCTGAGATAAAGGGT+AGG | 0.659181 | 8.2:+83356363 | MS.gene061341:CDS |
| TCGAGAAGGAGGAAATAGCT+CGG | 0.662293 | 8.2:+83356729 | MS.gene061341:CDS |
| GAGGTTCAGATTCCATATGT+GGG | 0.667584 | 8.2:+83357384 | MS.gene061341:CDS |
| TAGAGAACCGAATTAAGCCG+AGG | 0.677310 | 8.2:+83357365 | MS.gene061341:CDS |
| ATGGTTGCGACTAGTGACAA+GGG | 0.685800 | 8.2:+83357451 | MS.gene061341:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTGTGTAATTAGAAATA+AGG | + | chr8.2:83355989-83356008 | MS.gene061341:intron | 15.0% |
| !! | AATTGTGTAATTAGAAATAA+GGG | + | chr8.2:83355990-83356009 | MS.gene061341:intron | 15.0% |
| !!! | ATTGATCAAATTTTTTGAAA+TGG | + | chr8.2:83355959-83355978 | MS.gene061341:intron | 15.0% |
| !!! | TATTTCTAATTACACAATTT+CGG | - | chr8.2:83355989-83356008 | None:intergenic | 15.0% |
| !!! | TTGATTTTGTAAATCAATTT+TGG | - | chr8.2:83355647-83355666 | None:intergenic | 15.0% |
| !! | AAAACTGCATTATTATAACT+AGG | + | chr8.2:83356048-83356067 | MS.gene061341:intron | 20.0% |
| !! | CAAAAAAAGAACTTATTGTT+CGG | - | chr8.2:83356236-83356255 | None:intergenic | 20.0% |
| !! | GTGTAAAATTAATTCCAAAA+TGG | + | chr8.2:83355592-83355611 | MS.gene061341:intron | 20.0% |
| !! | TTAAATTTCATGCATACTAT+TGG | + | chr8.2:83357088-83357107 | MS.gene061341:CDS | 20.0% |
| !! | TTTAAAGATTCTCAACAATT+AGG | + | chr8.2:83355868-83355887 | MS.gene061341:intron | 20.0% |
| !!! | AGAATTGATTTTAACATGTT+TGG | + | chr8.2:83355733-83355752 | MS.gene061341:intron | 20.0% |
| !!! | ATTTTGTAAATCAATTTTGG+CGG | - | chr8.2:83355644-83355663 | None:intergenic | 20.0% |
| !!! | TAGTTATAATAATGCAGTTT+TGG | - | chr8.2:83356049-83356068 | None:intergenic | 20.0% |
| !!! | TGTTGAGAATCTTTAAAAAT+AGG | - | chr8.2:83355865-83355884 | None:intergenic | 20.0% |
| !!! | TTAACTTTTCCTTTTGTTTT+TGG | + | chr8.2:83356440-83356459 | MS.gene061341:CDS | 20.0% |
| !!! | TTATTTTTCACCAAAAAACT+TGG | + | chr8.2:83355479-83355498 | MS.gene061341:CDS | 20.0% |
| !!! | TTCTAGAATTAACTATCTTT+TGG | + | chr8.2:83355827-83355846 | MS.gene061341:intron | 20.0% |
| ! | AAAAACTCAAACTCATTGAT+GGG | - | chr8.2:83356167-83356186 | None:intergenic | 25.0% |
| ! | AAAAAGTTGAAAAGTTCTTG+AGG | + | chr8.2:83355514-83355533 | MS.gene061341:CDS | 25.0% |
| ! | AAACATTTGATTCTTGAGTA+TGG | + | chr8.2:83356659-83356678 | MS.gene061341:CDS | 25.0% |
| ! | AAAGATTAATTTCCTATGTC+AGG | + | chr8.2:83357285-83357304 | MS.gene061341:CDS | 25.0% |
| ! | AATATCTTAAATCACATGCA+TGG | + | chr8.2:83357136-83357155 | MS.gene061341:CDS | 25.0% |
| ! | AATTTACTCATATTGTGAGA+CGG | - | chr8.2:83357070-83357089 | None:intergenic | 25.0% |
| ! | TGACCTAACATAAAATAGAA+TGG | - | chr8.2:83355894-83355913 | None:intergenic | 25.0% |
| ! | TTTGTAATGTGCAAATTGTT+GGG | + | chr8.2:83356411-83356430 | MS.gene061341:CDS | 25.0% |
| !! | ATTTTCTCCATTTGTATGTT+TGG | + | chr8.2:83355549-83355568 | MS.gene061341:intron | 25.0% |
| !! | CAAGAACTTTTCAACTTTTT+TGG | - | chr8.2:83355514-83355533 | None:intergenic | 25.0% |
| !! | CATGTGATTTAAGATATTCA+TGG | - | chr8.2:83357134-83357153 | None:intergenic | 25.0% |
| !! | CTTTGTTTGTTGAAAAGATA+TGG | + | chr8.2:83356386-83356405 | MS.gene061341:CDS | 25.0% |
| !! | GAGAGAATGAAATGAATTTT+TGG | - | chr8.2:83355436-83355455 | None:intergenic | 25.0% |
| !! | TTTTCGATAAAATCAAGGAT+GGG | + | chr8.2:83356945-83356964 | MS.gene061341:CDS | 25.0% |
| !! | TTTTGTAATGTGCAAATTGT+TGG | + | chr8.2:83356410-83356429 | MS.gene061341:CDS | 25.0% |
| !!! | ATGGTTTTTCGATAAAATCA+AGG | + | chr8.2:83356940-83356959 | MS.gene061341:CDS | 25.0% |
| !!! | GATCAAATTTTTTGAAATGG+AGG | + | chr8.2:83355962-83355981 | MS.gene061341:intron | 25.0% |
| !!! | GTGTTTTTGGATTTTGATTT+GGG | + | chr8.2:83356524-83356543 | MS.gene061341:CDS | 25.0% |
| !!! | TGAATTTTTGGAAATCTGAT+CGG | - | chr8.2:83355424-83355443 | None:intergenic | 25.0% |
| !!! | TTTCTTTTTTGAGGAGTTTA+AGG | - | chr8.2:83355307-83355326 | None:intergenic | 25.0% |
| !!! | TTTTTCGATAAAATCAAGGA+TGG | + | chr8.2:83356944-83356963 | MS.gene061341:CDS | 25.0% |
| AAAACTCAAACTCATTGATG+GGG | - | chr8.2:83356166-83356185 | None:intergenic | 30.0% | |
| AAGTCAAAACATATAAACGC+CGG | - | chr8.2:83357346-83357365 | None:intergenic | 30.0% | |
| AATTTCCTATGTCAGGATAT+GGG | + | chr8.2:83357292-83357311 | MS.gene061341:CDS | 30.0% | |
| ATGTTTGGTATGATGTTTGT+AGG | + | chr8.2:83356570-83356589 | MS.gene061341:CDS | 30.0% | |
| ATTCAATCCCTAAATGTAGA+AGG | - | chr8.2:83357195-83357214 | None:intergenic | 30.0% | |
| CATGAAGCTCGAAATTTATT+GGG | - | chr8.2:83357541-83357560 | None:intergenic | 30.0% | |
| CATGATAAAGGTTATCAAAG+TGG | + | chr8.2:83357016-83357035 | MS.gene061341:CDS | 30.0% | |
| GAAAAACTCAAACTCATTGA+TGG | - | chr8.2:83356168-83356187 | None:intergenic | 30.0% | |
| TAATCAGAGAGTAACAAATG+AGG | - | chr8.2:83356121-83356140 | None:intergenic | 30.0% | |
| TAATTTCCTATGTCAGGATA+TGG | + | chr8.2:83357291-83357310 | MS.gene061341:CDS | 30.0% | |
| TATGATTTGAGTGATGGTAA+GGG | + | chr8.2:83356608-83356627 | MS.gene061341:CDS | 30.0% | |
| TCATGAAGCTCGAAATTTAT+TGG | - | chr8.2:83357542-83357561 | None:intergenic | 30.0% | |
| TCTAATCTCATTTCGAAGTT+GGG | + | chr8.2:83355456-83355475 | MS.gene061341:CDS | 30.0% | |
| TGATTATCTGTATTGTCAAC+AGG | + | chr8.2:83356135-83356154 | MS.gene061341:intron | 30.0% | |
| TTATGATTTGAGTGATGGTA+AGG | + | chr8.2:83356607-83356626 | MS.gene061341:CDS | 30.0% | |
| TTGATTGCCTTCTACATTTA+GGG | + | chr8.2:83357185-83357204 | MS.gene061341:CDS | 30.0% | |
| TTGTGAATTTGGATTTCCTT+GGG | + | chr8.2:83356292-83356311 | MS.gene061341:CDS | 30.0% | |
| TTTGATTGCCTTCTACATTT+AGG | + | chr8.2:83357184-83357203 | MS.gene061341:CDS | 30.0% | |
| TTTGTGAATTTGGATTTCCT+TGG | + | chr8.2:83356291-83356310 | MS.gene061341:CDS | 30.0% | |
| ! | AACCAAGTTTCAATTTTGGA+AGG | + | chr8.2:83355687-83355706 | MS.gene061341:intron | 30.0% |
| ! | AAGCTATAATTTGTAGCTGT+TGG | + | chr8.2:83355803-83355822 | MS.gene061341:intron | 30.0% |
| ! | AATTGCTCAAACCAATGTTT+TGG | - | chr8.2:83357514-83357533 | None:intergenic | 30.0% |
| ! | AGGCCATTCTATTTTATGTT+AGG | + | chr8.2:83355888-83355907 | MS.gene061341:intron | 30.0% |
| ! | GTGTTTTATGATTTGAGTGA+TGG | + | chr8.2:83356602-83356621 | MS.gene061341:CDS | 30.0% |
| ! | TACTGACAAAACAGCAATTT+TGG | - | chr8.2:83356018-83356037 | None:intergenic | 30.0% |
| !! | AAAAGTGGTTCTGAGATAAA+GGG | + | chr8.2:83356359-83356378 | MS.gene061341:CDS | 30.0% |
| !! | ACAAGGGATTTTCTTTTTTG+AGG | - | chr8.2:83355316-83355335 | None:intergenic | 30.0% |
| !! | ACCAAGTTTCAATTTTGGAA+GGG | + | chr8.2:83355688-83355707 | MS.gene061341:intron | 30.0% |
| !! | AGGTTATCAAAGTGGTTTTA+AGG | + | chr8.2:83357024-83357043 | MS.gene061341:CDS | 30.0% |
| !! | ATTTTGACCATCCAATTTGA+TGG | - | chr8.2:83355934-83355953 | None:intergenic | 30.0% |
| !! | CTGGGTGAATTTTAAAAACA+CGG | - | chr8.2:83357486-83357505 | None:intergenic | 30.0% |
| !! | GAGTTTTTCTTTGAAAGCAT+TGG | + | chr8.2:83356179-83356198 | MS.gene061341:CDS | 30.0% |
| !! | GGTTTTATGTTTAGGAAAAG+TGG | + | chr8.2:83356344-83356363 | MS.gene061341:CDS | 30.0% |
| !! | TAAGCTTGGTGTGATTTATA+CGG | + | chr8.2:83356316-83356335 | MS.gene061341:CDS | 30.0% |
| !!! | AATTGCTGTTTTGTCAGTAT+AGG | + | chr8.2:83356019-83356038 | MS.gene061341:intron | 30.0% |
| !!! | ATCTTTTTCTCTAGAGTTTC+AGG | - | chr8.2:83357271-83357290 | None:intergenic | 30.0% |
| !!! | ATTGCTGTTTTGTCAGTATA+GGG | + | chr8.2:83356020-83356039 | MS.gene061341:intron | 30.0% |
| !!! | GGTGTTTTTGGATTTTGATT+TGG | + | chr8.2:83356523-83356542 | MS.gene061341:CDS | 30.0% |
| !!! | GTGAAAGAATCCAAGTTTTT+TGG | - | chr8.2:83355492-83355511 | None:intergenic | 30.0% |
| !!! | TTTTGGATTTTGATTTGGGA+GGG | + | chr8.2:83356528-83356547 | MS.gene061341:CDS | 30.0% |
| !!! | TTTTTGGATTTTGATTTGGG+AGG | + | chr8.2:83356527-83356546 | MS.gene061341:CDS | 30.0% |
| !!! | TTTTTTGAGGAGTTTAAGGT+TGG | - | chr8.2:83355303-83355322 | None:intergenic | 30.0% |
| AAACTATTCCATTGCAAGCA+TGG | + | chr8.2:83357432-83357451 | MS.gene061341:CDS | 35.0% | |
| ACCTTTATCATGCTCTTCAT+TGG | - | chr8.2:83357008-83357027 | None:intergenic | 35.0% | |
| ATGATTTGAGTGATGGTAAG+GGG | + | chr8.2:83356609-83356628 | MS.gene061341:CDS | 35.0% | |
| CCTTTATCATGCTCTTCATT+GGG | - | chr8.2:83357007-83357026 | None:intergenic | 35.0% | |
| CGTGAAACCAAACATACAAA+TGG | - | chr8.2:83355559-83355578 | None:intergenic | 35.0% | |
| CTCTAATCTCATTTCGAAGT+TGG | + | chr8.2:83355455-83355474 | MS.gene061341:CDS | 35.0% | |
| GCAACATCACTTTCAATTTG+CGG | - | chr8.2:83355239-83355258 | None:intergenic | 35.0% | |
| TGCGTTGGGAACAATAAAAA+TGG | + | chr8.2:83356877-83356896 | MS.gene061341:CDS | 35.0% | |
| TTAAGGCAATTCATGATGCA+AGG | + | chr8.2:83357041-83357060 | MS.gene061341:CDS | 35.0% | |
| TTGAAGCTGTTGAAACACAT+TGG | + | chr8.2:83356809-83356828 | MS.gene061341:CDS | 35.0% | |
| ! | AGAAGAGGAGTTGATTGAAA+AGG | + | chr8.2:83356682-83356701 | MS.gene061341:CDS | 35.0% |
| ! | ATAGGTTGCTTTCTGATTTG+AGG | + | chr8.2:83356498-83356517 | MS.gene061341:CDS | 35.0% |
| ! | CACATTGGAATGGATTCTAA+AGG | + | chr8.2:83356824-83356843 | MS.gene061341:CDS | 35.0% |
| ! | GCAGAACCAAGTTTCAATTT+TGG | + | chr8.2:83355683-83355702 | MS.gene061341:intron | 35.0% |
| ! | TACTAGAGAGCAATCCATTT+TGG | - | chr8.2:83355609-83355628 | None:intergenic | 35.0% |
| ! | TGATTTGAGGATGGTGTTTT+TGG | + | chr8.2:83356511-83356530 | MS.gene061341:CDS | 35.0% |
| ! | TGGAACAGAAATGTCGTTTA+AGG | - | chr8.2:83355269-83355288 | None:intergenic | 35.0% |
| ! | TGGGAATCATAAGCTTTTAG+TGG | + | chr8.2:83356964-83356983 | MS.gene061341:CDS | 35.0% |
| ! | TTATCGATGATGAGGTTGAT+AGG | + | chr8.2:83356480-83356499 | MS.gene061341:CDS | 35.0% |
| !! | AAAAGTGTCCAAAAGCTCTA+AGG | - | chr8.2:83357323-83357342 | None:intergenic | 35.0% |
| !! | CATATGTGGGCTTTAGAAAA+GGG | + | chr8.2:83357397-83357416 | MS.gene061341:CDS | 35.0% |
| !! | GAAAAGTGGTTCTGAGATAA+AGG | + | chr8.2:83356358-83356377 | MS.gene061341:CDS | 35.0% |
| !! | TTCATGCATACTATTGGCTT+TGG | + | chr8.2:83357094-83357113 | MS.gene061341:CDS | 35.0% |
| !!! | GGATTTTGGCTTAGAATCTT+TGG | - | chr8.2:83357250-83357269 | None:intergenic | 35.0% |
| !!! | TCTCTAGAGTTTCAGGATTT+TGG | - | chr8.2:83357264-83357283 | None:intergenic | 35.0% |
| !!! | TTGCTGTTTTGTCAGTATAG+GGG | + | chr8.2:83356021-83356040 | MS.gene061341:intron | 35.0% |
| AAATTGCCACGCCATCAAAT+TGG | + | chr8.2:83355920-83355939 | MS.gene061341:intron | 40.0% | |
| AAGAACTATGCTCATGCGTT+GGG | + | chr8.2:83356863-83356882 | MS.gene061341:CDS | 40.0% | |
| AGATAGGTGAACTCATTGGA+AGG | + | chr8.2:83356633-83356652 | MS.gene061341:CDS | 40.0% | |
| ATCTGAACCTCGGCTTAATT+CGG | - | chr8.2:83357375-83357394 | None:intergenic | 40.0% | |
| CACATATGGAATCTGAACCT+CGG | - | chr8.2:83357385-83357404 | None:intergenic | 40.0% | |
| GAATCTTCCCAATCTGATGA+GGG | + | chr8.2:83356901-83356920 | MS.gene061341:CDS | 40.0% | |
| GAGGTTCAGATTCCATATGT+GGG | + | chr8.2:83357384-83357403 | MS.gene061341:CDS | 40.0% | |
| GATTCTTGAGTATGGAGAAG+AGG | + | chr8.2:83356667-83356686 | MS.gene061341:CDS | 40.0% | |
| GCCCTTCCAAAATTGAAACT+TGG | - | chr8.2:83355692-83355711 | None:intergenic | 40.0% | |
| GCTGTTGAAACACATTGGAA+TGG | + | chr8.2:83356814-83356833 | MS.gene061341:CDS | 40.0% | |
| GCTTGTGTGCTTTGTGAATT+TGG | + | chr8.2:83356281-83356300 | MS.gene061341:CDS | 40.0% | |
| GGAGTTGTTGAGTCTCAATT+TGG | + | chr8.2:83356769-83356788 | MS.gene061341:CDS | 40.0% | |
| TTGAAGGGAATGTGGATGTT+TGG | + | chr8.2:83356555-83356574 | MS.gene061341:CDS | 40.0% | |
| ! | AGAGCTTTTGGACACTTTTC+CGG | + | chr8.2:83357324-83357343 | MS.gene061341:CDS | 40.0% |
| ! | ATAGCTCGGTTGATTCTACT+AGG | + | chr8.2:83356743-83356762 | MS.gene061341:CDS | 40.0% |
| ! | ATCTGATCGGCAAAAGCATA+AGG | - | chr8.2:83355411-83355430 | None:intergenic | 40.0% |
| ! | CCCAATGAAGAGCATGATAA+AGG | + | chr8.2:83357004-83357023 | MS.gene061341:CDS | 40.0% |
| ! | GGAATGGATTCTAAAGGTCT+TGG | + | chr8.2:83356830-83356849 | MS.gene061341:CDS | 40.0% |
| ! | GTTGCTTTCTGATTTGAGGA+TGG | + | chr8.2:83356502-83356521 | MS.gene061341:CDS | 40.0% |
| ! | TCGGTTGATTCTACTAGGTT+CGG | + | chr8.2:83356748-83356767 | MS.gene061341:CDS | 40.0% |
| ! | TCTGATCGGCAAAAGCATAA+GGG | - | chr8.2:83355410-83355429 | None:intergenic | 40.0% |
| ! | TTGTAGATTCAGTGTCGAGA+AGG | + | chr8.2:83356715-83356734 | MS.gene061341:CDS | 40.0% |
| !! | ACTAGTGACAAGGGTTTTGT+TGG | + | chr8.2:83357460-83357479 | MS.gene061341:CDS | 40.0% |
| !! | CCATATGTGGGCTTTAGAAA+AGG | + | chr8.2:83357396-83357415 | MS.gene061341:CDS | 40.0% |
| !! | TAAGGTTGGTGTGATGATGT+TGG | - | chr8.2:83355289-83355308 | None:intergenic | 40.0% |
| !!! | CCTTTTCTAAAGCCCACATA+TGG | - | chr8.2:83357399-83357418 | None:intergenic | 40.0% |
| !!! | CGGAGAGTGGTTTTATGTTT+AGG | + | chr8.2:83356336-83356355 | MS.gene061341:CDS | 40.0% |
| !!! | TGCTGTTTTGTCAGTATAGG+GGG | + | chr8.2:83356022-83356041 | MS.gene061341:intron | 40.0% |
| AAGGGATGGATCTTGTGGAA+TGG | - | chr8.2:83355392-83355411 | None:intergenic | 45.0% | |
| AGCATAAGGGATGGATCTTG+TGG | - | chr8.2:83355397-83355416 | None:intergenic | 45.0% | |
| AGGGGGATTTATCGATGATG+AGG | + | chr8.2:83356472-83356491 | MS.gene061341:CDS | 45.0% | |
| AGTGATGGTAAGGGGAAGAT+AGG | + | chr8.2:83356617-83356636 | MS.gene061341:CDS | 45.0% | |
| AGTGTCCCATATCCTGACAT+AGG | - | chr8.2:83357300-83357319 | None:intergenic | 45.0% | |
| ATCACACCAAGCTTATCCCA+AGG | - | chr8.2:83356311-83356330 | None:intergenic | 45.0% | |
| ATCGATAAATCCCCCTTCCT+CGG | - | chr8.2:83356468-83356487 | None:intergenic | 45.0% | |
| ATGGTTGCGACTAGTGACAA+GGG | + | chr8.2:83357451-83357470 | MS.gene061341:CDS | 45.0% | |
| CAAGTTTCTTGTGGCGACAA+GGG | - | chr8.2:83355332-83355351 | None:intergenic | 45.0% | |
| CGAATCTTCCCAATCTGATG+AGG | + | chr8.2:83356900-83356919 | MS.gene061341:CDS | 45.0% | |
| CGAGGTTCAGATTCCATATG+TGG | + | chr8.2:83357383-83357402 | MS.gene061341:CDS | 45.0% | |
| GAAGAACTATGCTCATGCGT+TGG | + | chr8.2:83356862-83356881 | MS.gene061341:CDS | 45.0% | |
| GGATTTCCTTGGGATAAGCT+TGG | + | chr8.2:83356302-83356321 | MS.gene061341:CDS | 45.0% | |
| GGGAAGATAGGTGAACTCAT+TGG | + | chr8.2:83356629-83356648 | MS.gene061341:CDS | 45.0% | |
| GGTGTGATTTATACGGAGAG+TGG | + | chr8.2:83356323-83356342 | MS.gene061341:CDS | 45.0% | |
| GTGACACTGCAAGTTTCTTG+TGG | - | chr8.2:83355341-83355360 | None:intergenic | 45.0% | |
| TAGAGAACCGAATTAAGCCG+AGG | + | chr8.2:83357365-83357384 | MS.gene061341:CDS | 45.0% | |
| TCCTCGGCACCAAAAACAAA+AGG | - | chr8.2:83356452-83356471 | None:intergenic | 45.0% | |
| TCGAGAAGGAGGAAATAGCT+CGG | + | chr8.2:83356729-83356748 | MS.gene061341:CDS | 45.0% | |
| TTCAATTTGCGGTGAAGTGC+AGG | - | chr8.2:83355228-83355247 | None:intergenic | 45.0% | |
| ! | ATCGGCAAAAGCATAAGGGA+TGG | - | chr8.2:83355406-83355425 | None:intergenic | 45.0% |
| ! | ATTTGGGAGGGTGTGTTGAA+GGG | + | chr8.2:83356540-83356559 | MS.gene061341:CDS | 45.0% |
| ! | GGTTTCACGTTCGTTCTAGA+TGG | + | chr8.2:83355570-83355589 | MS.gene061341:intron | 45.0% |
| ! | TAGATTCAGTGTCGAGAAGG+AGG | + | chr8.2:83356718-83356737 | MS.gene061341:CDS | 45.0% |
| !! | GTGGTTCTGAGATAAAGGGT+AGG | + | chr8.2:83356363-83356382 | MS.gene061341:CDS | 45.0% |
| !!! | AACCAATGTTTTGGAGCAGC+TGG | - | chr8.2:83357505-83357524 | None:intergenic | 45.0% |
| !!! | ACCAATGTTTTGGAGCAGCT+GGG | - | chr8.2:83357504-83357523 | None:intergenic | 45.0% |
| !!! | TCCTTTTGTTTTTGGTGCCG+AGG | + | chr8.2:83356448-83356467 | MS.gene061341:CDS | 45.0% |
| !!! | TTGTTTTTGGTGCCGAGGAA+GGG | + | chr8.2:83356453-83356472 | MS.gene061341:CDS | 45.0% |
| !!! | TTTGTTTTTGGTGCCGAGGA+AGG | + | chr8.2:83356452-83356471 | MS.gene061341:CDS | 45.0% |
| ACCCAGCTGCTCCAAAACAT+TGG | + | chr8.2:83357500-83357519 | MS.gene061341:CDS | 50.0% | |
| ACCCATAGCCCTCATCAGAT+TGG | - | chr8.2:83356912-83356931 | None:intergenic | 50.0% | |
| AGGGTGTGTTGAAGGGAATG+TGG | + | chr8.2:83356547-83356566 | MS.gene061341:CDS | 50.0% | |
| AGTCGCAACCATGCTTGCAA+TGG | - | chr8.2:83357443-83357462 | None:intergenic | 50.0% | |
| CATGGTTGCGACTAGTGACA+AGG | + | chr8.2:83357450-83357469 | MS.gene061341:CDS | 50.0% | |
| CCCAATCTGATGAGGGCTAT+GGG | + | chr8.2:83356908-83356927 | MS.gene061341:CDS | 50.0% | |
| CCCATAGCCCTCATCAGATT+GGG | - | chr8.2:83356911-83356930 | None:intergenic | 50.0% | |
| GCAAGTTTCTTGTGGCGACA+AGG | - | chr8.2:83355333-83355352 | None:intergenic | 50.0% | |
| GGGCTATGGGTTTACGTGAA+TGG | + | chr8.2:83356921-83356940 | MS.gene061341:CDS | 50.0% | |
| TCCCAATCTGATGAGGGCTA+TGG | + | chr8.2:83356907-83356926 | MS.gene061341:CDS | 50.0% | |
| TGCCACGCCATCAAATTGGA+TGG | + | chr8.2:83355924-83355943 | MS.gene061341:intron | 50.0% | |
| ! | GATTTGGGAGGGTGTGTTGA+AGG | + | chr8.2:83356539-83356558 | MS.gene061341:CDS | 50.0% |
| ! | GGGACACTCCTTAGAGCTTT+TGG | + | chr8.2:83357312-83357331 | MS.gene061341:CDS | 50.0% |
| !! | GACCATCCAATTTGATGGCG+TGG | - | chr8.2:83355929-83355948 | None:intergenic | 50.0% |
| !!! | TGTTTTTGGTGCCGAGGAAG+GGG | + | chr8.2:83356454-83356473 | MS.gene061341:CDS | 50.0% |
| ATTTGCGGTGAAGTGCAGGC+AGG | - | chr8.2:83355224-83355243 | None:intergenic | 55.0% | |
| TTTGCGGTGAAGTGCAGGCA+GGG | - | chr8.2:83355223-83355242 | None:intergenic | 55.0% | |
| !!! | GTTTTTGGTGCCGAGGAAGG+GGG | + | chr8.2:83356455-83356474 | MS.gene061341:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 83355198 | 83357561 | 83355198 | ID=MS.gene061341 |
| chr8.2 | mRNA | 83355198 | 83357561 | 83355198 | ID=MS.gene061341.t1;Parent=MS.gene061341 |
| chr8.2 | exon | 83355198 | 83355535 | 83355198 | ID=MS.gene061341.t1.exon1;Parent=MS.gene061341.t1 |
| chr8.2 | CDS | 83355198 | 83355535 | 83355198 | ID=cds.MS.gene061341.t1;Parent=MS.gene061341.t1 |
| chr8.2 | exon | 83356157 | 83357561 | 83356157 | ID=MS.gene061341.t1.exon2;Parent=MS.gene061341.t1 |
| chr8.2 | CDS | 83356157 | 83357561 | 83356157 | ID=cds.MS.gene061341.t1;Parent=MS.gene061341.t1 |
| Gene Sequence |
| Protein sequence |
