Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05973.t1 | XP_013447216.1 | 96.8 | 405 | 12 | 1 | 1 | 405 | 410 | 813 | 1.30E-207 | 732.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05973.t1 | Q8L7I1 | 48.0 | 342 | 154 | 8 | 66 | 405 | 215 | 534 | 3.5e-65 | 250.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05973.t1 | A0A072TWI2 | 96.8 | 405 | 12 | 1 | 1 | 405 | 410 | 813 | 9.1e-208 | 732.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049435 | MS.gene05973 | 0.816829 | 4.52E-52 | -1.69E-46 |
| MS.gene050226 | MS.gene05973 | 0.808794 | 2.60E-50 | -1.69E-46 |
| MS.gene050228 | MS.gene05973 | 0.809507 | 1.83E-50 | -1.69E-46 |
| MS.gene051800 | MS.gene05973 | 0.810934 | 9.01E-51 | -1.69E-46 |
| MS.gene053166 | MS.gene05973 | 0.805266 | 1.45E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene05973 | 0.801864 | 7.36E-49 | -1.69E-46 |
| MS.gene054467 | MS.gene05973 | 0.82036 | 7.15E-53 | -1.69E-46 |
| MS.gene05510 | MS.gene05973 | 0.806168 | 9.38E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene05973 | 0.817002 | 4.13E-52 | -1.69E-46 |
| MS.gene057026 | MS.gene05973 | 0.802277 | 6.06E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene05973 | 0.825613 | 4.26E-54 | -1.69E-46 |
| MS.gene058919 | MS.gene05973 | 0.815 | 1.16E-51 | -1.69E-46 |
| MS.gene058979 | MS.gene05973 | 0.807335 | 5.32E-50 | -1.69E-46 |
| MS.gene059331 | MS.gene05973 | 0.814232 | 1.71E-51 | -1.69E-46 |
| MS.gene059335 | MS.gene05973 | 0.820287 | 7.43E-53 | -1.69E-46 |
| MS.gene05973 | MS.gene060167 | 0.80876 | 2.64E-50 | -1.69E-46 |
| MS.gene05973 | MS.gene06052 | 0.808291 | 3.33E-50 | -1.69E-46 |
| MS.gene05973 | MS.gene060683 | 0.801188 | 1.01E-48 | -1.69E-46 |
| MS.gene05973 | MS.gene060685 | 0.801323 | 9.50E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene060998 | 0.820293 | 7.40E-53 | -1.69E-46 |
| MS.gene05973 | MS.gene061341 | 0.805193 | 1.50E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene062156 | 0.801255 | 9.81E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene065568 | 0.826533 | 2.57E-54 | -1.69E-46 |
| MS.gene05973 | MS.gene066206 | 0.804645 | 1.96E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene066436 | 0.812179 | 4.83E-51 | -1.69E-46 |
| MS.gene05973 | MS.gene066896 | 0.813433 | 2.57E-51 | -1.69E-46 |
| MS.gene05973 | MS.gene06705 | 0.811819 | 5.79E-51 | -1.69E-46 |
| MS.gene05973 | MS.gene067151 | 0.801263 | 9.78E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene06723 | 0.802933 | 4.43E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene067450 | 0.819642 | 1.04E-52 | -1.69E-46 |
| MS.gene05973 | MS.gene067558 | 0.807531 | 4.83E-50 | -1.69E-46 |
| MS.gene05973 | MS.gene067982 | 0.809166 | 2.16E-50 | -1.69E-46 |
| MS.gene05973 | MS.gene06911 | 0.815107 | 1.09E-51 | -1.69E-46 |
| MS.gene05973 | MS.gene06921 | 0.802413 | 5.68E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene06922 | 0.804282 | 2.33E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene06927 | 0.808366 | 3.21E-50 | -1.69E-46 |
| MS.gene05973 | MS.gene069554 | 0.828045 | 1.12E-54 | -1.69E-46 |
| MS.gene05973 | MS.gene071457 | 0.803746 | 3.01E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene072677 | 0.801957 | 7.05E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene072950 | 0.803044 | 4.21E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene072994 | 0.810986 | 8.77E-51 | -1.69E-46 |
| MS.gene05973 | MS.gene073753 | 0.80271 | 4.93E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene07510 | 0.803342 | 3.65E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene09008 | 0.813693 | 2.25E-51 | -1.69E-46 |
| MS.gene05973 | MS.gene20544 | 0.81442 | 1.55E-51 | -1.69E-46 |
| MS.gene05973 | MS.gene20635 | 0.805389 | 1.37E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene21059 | 0.805673 | 1.19E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene22091 | 0.825172 | 5.42E-54 | -1.69E-46 |
| MS.gene05973 | MS.gene22271 | 0.811718 | 6.09E-51 | -1.69E-46 |
| MS.gene05973 | MS.gene23055 | 0.805875 | 1.08E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene24067 | 0.812203 | 4.77E-51 | -1.69E-46 |
| MS.gene05973 | MS.gene24203 | 0.815821 | 7.59E-52 | -1.69E-46 |
| MS.gene05973 | MS.gene26729 | 0.803594 | 3.24E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene27026 | 0.812964 | 3.25E-51 | -1.69E-46 |
| MS.gene05973 | MS.gene29000 | 0.804207 | 2.41E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene29361 | 0.811136 | 8.14E-51 | -1.69E-46 |
| MS.gene05973 | MS.gene29756 | 0.805424 | 1.34E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene30301 | 0.80446 | 2.14E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene31079 | 0.801029 | 1.09E-48 | -1.69E-46 |
| MS.gene05973 | MS.gene31652 | 0.800343 | 1.51E-48 | -1.69E-46 |
| MS.gene05973 | MS.gene34065 | 0.806842 | 6.76E-50 | -1.69E-46 |
| MS.gene05973 | MS.gene34667 | 0.810205 | 1.29E-50 | -1.69E-46 |
| MS.gene05973 | MS.gene35408 | 0.820636 | 6.18E-53 | -1.69E-46 |
| MS.gene05973 | MS.gene35808 | 0.813733 | 2.20E-51 | -1.69E-46 |
| MS.gene05973 | MS.gene35822 | 0.80166 | 8.11E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene36154 | 0.805238 | 1.47E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene37483 | 0.805008 | 1.64E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene40068 | 0.812693 | 3.73E-51 | -1.69E-46 |
| MS.gene05973 | MS.gene40079 | 0.803 | 4.30E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene40518 | 0.802393 | 5.73E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene43430 | 0.811883 | 5.60E-51 | -1.69E-46 |
| MS.gene05973 | MS.gene43973 | 0.826365 | 2.82E-54 | -1.69E-46 |
| MS.gene05973 | MS.gene44603 | 0.810362 | 1.20E-50 | -1.69E-46 |
| MS.gene05973 | MS.gene46250 | 0.814149 | 1.78E-51 | -1.69E-46 |
| MS.gene05973 | MS.gene50869 | 0.816323 | 5.87E-52 | -1.69E-46 |
| MS.gene05973 | MS.gene51818 | 0.810082 | 1.38E-50 | -1.69E-46 |
| MS.gene05973 | MS.gene52061 | 0.806518 | 7.91E-50 | -1.69E-46 |
| MS.gene05973 | MS.gene52437 | 0.828484 | 8.76E-55 | -1.69E-46 |
| MS.gene05973 | MS.gene52438 | 0.814135 | 1.80E-51 | -1.69E-46 |
| MS.gene05973 | MS.gene52853 | 0.800415 | 1.46E-48 | -1.69E-46 |
| MS.gene05973 | MS.gene54904 | 0.801044 | 1.08E-48 | -1.69E-46 |
| MS.gene05973 | MS.gene55717 | 0.82439 | 8.29E-54 | -1.69E-46 |
| MS.gene05973 | MS.gene55718 | 0.815316 | 9.84E-52 | -1.69E-46 |
| MS.gene05973 | MS.gene56013 | 0.834205 | 3.43E-56 | -1.69E-46 |
| MS.gene05973 | MS.gene56421 | 0.835743 | 1.40E-56 | -1.69E-46 |
| MS.gene05973 | MS.gene56431 | 0.804083 | 2.56E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene59282 | 0.82979 | 4.23E-55 | -1.69E-46 |
| MS.gene05973 | MS.gene65291 | 0.825022 | 5.88E-54 | -1.69E-46 |
| MS.gene05973 | MS.gene67893 | 0.815368 | 9.58E-52 | -1.69E-46 |
| MS.gene05973 | MS.gene69604 | 0.800129 | 1.67E-48 | -1.69E-46 |
| MS.gene05973 | MS.gene69794 | 0.802644 | 5.09E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene70021 | 0.819135 | 1.36E-52 | -1.69E-46 |
| MS.gene05973 | MS.gene73332 | 0.808882 | 2.49E-50 | -1.69E-46 |
| MS.gene05973 | MS.gene78234 | 0.801334 | 9.46E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene79604 | 0.824048 | 9.97E-54 | -1.69E-46 |
| MS.gene05973 | MS.gene80233 | 0.800876 | 1.17E-48 | -1.69E-46 |
| MS.gene05973 | MS.gene82542 | 0.805136 | 1.54E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene82879 | 0.816654 | 4.95E-52 | -1.69E-46 |
| MS.gene05973 | MS.gene84326 | 0.821946 | 3.08E-53 | -1.69E-46 |
| MS.gene05973 | MS.gene84840 | 0.806148 | 9.47E-50 | -1.69E-46 |
| MS.gene05973 | MS.gene85650 | 0.805925 | 1.05E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene86844 | 0.80923 | 2.10E-50 | -1.69E-46 |
| MS.gene05973 | MS.gene86973 | 0.820231 | 7.65E-53 | -1.69E-46 |
| MS.gene05973 | MS.gene87264 | 0.806882 | 6.63E-50 | -1.69E-46 |
| MS.gene05973 | MS.gene87669 | 0.82214 | 2.78E-53 | -1.69E-46 |
| MS.gene05973 | MS.gene90022 | 0.805882 | 1.08E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene90431 | 0.823489 | 1.35E-53 | -1.69E-46 |
| MS.gene05973 | MS.gene91208 | 0.822361 | 2.47E-53 | -1.69E-46 |
| MS.gene05973 | MS.gene92122 | 0.806671 | 7.35E-50 | -1.69E-46 |
| MS.gene05973 | MS.gene93178 | 0.808562 | 2.91E-50 | -1.69E-46 |
| MS.gene05973 | MS.gene95255 | 0.818061 | 2.39E-52 | -1.69E-46 |
| MS.gene05973 | MS.gene95981 | 0.82921 | 5.85E-55 | -1.69E-46 |
| MS.gene05973 | MS.gene99802 | 0.80549 | 1.30E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 80 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGGGAGCTCGCTCTGATTC+TGG | 0.072097 | 4.2:+4265182 | None:intergenic |
| TAATTTCCTTCCTTAGATTT+TGG | 0.133665 | 4.2:+4265549 | None:intergenic |
| CTTTCACAGAATCAGATTTA+AGG | 0.198788 | 4.2:+4264835 | None:intergenic |
| AAAATCTTCTCGAAGCCTTT+AGG | 0.231661 | 4.2:-4265472 | MS.gene05973:CDS |
| TGAAAGGTGATAAAAGAAAA+TGG | 0.240611 | 4.2:-4264818 | MS.gene05973:CDS |
| GATATAATGAATATAGTTAA+AGG | 0.267083 | 4.2:-4265713 | MS.gene05973:CDS |
| AAATCTTCTCGAAGCCTTTA+GGG | 0.304999 | 4.2:-4265471 | MS.gene05973:CDS |
| GCCTTTAGGGCTGCTATAAC+AGG | 0.315732 | 4.2:-4265458 | MS.gene05973:CDS |
| TCTGGAAAGAATTGGATTCT+TGG | 0.322471 | 4.2:+4265151 | None:intergenic |
| CGGGAGCTCGCTCTGATTCT+GGG | 0.327606 | 4.2:+4265183 | None:intergenic |
| GGGATTGTGAAATTGAGTTT+TGG | 0.333583 | 4.2:-4265292 | MS.gene05973:CDS |
| CCTCACTAGTCCAAAATCTA+AGG | 0.343630 | 4.2:-4265559 | MS.gene05973:CDS |
| TGGATTCTTGGCCTGACATT+CGG | 0.351968 | 4.2:+4265163 | None:intergenic |
| TGAAGCTTCAACCGATAGTT+CGG | 0.367125 | 4.2:+4265865 | None:intergenic |
| GATGCTGCAATCTCCTTTGT+TGG | 0.370503 | 4.2:+4265737 | None:intergenic |
| ATATACAATCTGGAAAGAAT+TGG | 0.372942 | 4.2:+4265143 | None:intergenic |
| GCATCAGTTTCTTCTTCAGC+TGG | 0.373052 | 4.2:-4264885 | MS.gene05973:CDS |
| GGATTCTTGGCCTGACATTC+GGG | 0.380821 | 4.2:+4265164 | None:intergenic |
| TTTCTCAGATAAACAAACTT+TGG | 0.395771 | 4.2:+4264971 | None:intergenic |
| CATTTGACTAGCAGCTGCTC+TGG | 0.397549 | 4.2:+4265832 | None:intergenic |
| TTGTCATCAACAGATTGATT+TGG | 0.401400 | 4.2:+4265035 | None:intergenic |
| CAAATCCTCTATAAACTTTG+AGG | 0.403161 | 4.2:-4265510 | MS.gene05973:CDS |
| AGATTCCTTTGTGCCAACTT+TGG | 0.404039 | 4.2:+4264860 | None:intergenic |
| AAAGTTGGCACAAAGGAATC+TGG | 0.416752 | 4.2:-4264858 | MS.gene05973:CDS |
| GAAGCTTCAACCGATAGTTC+GGG | 0.423173 | 4.2:+4265866 | None:intergenic |
| TGTTTAGTCTGTTCCGAGAA+AGG | 0.424635 | 4.2:+4265080 | None:intergenic |
| TGTATCTGCTATATACAATC+TGG | 0.430477 | 4.2:+4265133 | None:intergenic |
| TGCACGCTTTCTTCTACCAT+TGG | 0.430540 | 4.2:+4265322 | None:intergenic |
| TCTTCAGCTGGTGCCAAAGT+TGG | 0.431339 | 4.2:-4264873 | MS.gene05973:CDS |
| CCCTGTTATAGCAGCCCTAA+AGG | 0.443432 | 4.2:+4265457 | None:intergenic |
| GAAGAAAGCGTGCATGGGAT+AGG | 0.446500 | 4.2:-4265313 | MS.gene05973:CDS |
| ATGAAGAGAGTTTCTGATGA+TGG | 0.452594 | 4.2:-4265590 | MS.gene05973:CDS |
| TTCTTTGCCTTCAGAGCTGA+AGG | 0.455017 | 4.2:+4265404 | None:intergenic |
| CAAAATAATCCGTCAGCAAA+AGG | 0.457161 | 4.2:-4265059 | MS.gene05973:CDS |
| TTTAAAACATTCTCCAACAA+AGG | 0.466040 | 4.2:-4265750 | MS.gene05973:CDS |
| AGAGGATGTCAAACCTTTCT+CGG | 0.466789 | 4.2:-4265093 | MS.gene05973:CDS |
| AGAGCGAGCTCCCGAATGTC+AGG | 0.468530 | 4.2:-4265174 | MS.gene05973:CDS |
| GAACACAGCAAATGAAAGTC+AGG | 0.475761 | 4.2:-4264754 | MS.gene05973:CDS |
| GAAAAGAAAGAAAACATGAC+TGG | 0.479402 | 4.2:-4265632 | MS.gene05973:CDS |
| GAGAGCTTCAAAACCTGAAA+AGG | 0.481141 | 4.2:-4265255 | MS.gene05973:CDS |
| ATATAATGAATATAGTTAAA+GGG | 0.482474 | 4.2:-4265712 | MS.gene05973:CDS |
| TGATAAAAGAAAATGGGCCT+TGG | 0.488612 | 4.2:-4264811 | MS.gene05973:CDS |
| GAAAGGTGATAAAAGAAAAT+GGG | 0.488760 | 4.2:-4264817 | MS.gene05973:CDS |
| TAAAAGAAAATGGGCCTTGG+AGG | 0.505512 | 4.2:-4264808 | MS.gene05973:CDS |
| CTTAATTGTACTTTACCAGC+TGG | 0.506554 | 4.2:+4264924 | None:intergenic |
| AAGATTGTACGTGGTCCAGC+TGG | 0.523778 | 4.2:-4264939 | MS.gene05973:CDS |
| TTCAACCGATAGTTCGGGGT+TGG | 0.525228 | 4.2:+4265871 | None:intergenic |
| CAAGTCCCTTGGAAAGCTTA+CGG | 0.528945 | 4.2:+4265684 | None:intergenic |
| GTTATCCCCTTCAGCTCTGA+AGG | 0.529362 | 4.2:-4265411 | MS.gene05973:CDS |
| AAGAAAGCGTGCATGGGATA+GGG | 0.529759 | 4.2:-4265312 | MS.gene05973:CDS |
| AAGAAAACATGACTGGGTTG+AGG | 0.531917 | 4.2:-4265625 | MS.gene05973:CDS |
| CTTAAATCTGATTCTGTGAA+AGG | 0.542950 | 4.2:-4264834 | MS.gene05973:CDS |
| ATGGTAGAAGAAAGCGTGCA+TGG | 0.547779 | 4.2:-4265319 | MS.gene05973:CDS |
| AGAAAACATGACTGGGTTGA+GGG | 0.548051 | 4.2:-4265624 | MS.gene05973:CDS |
| CTTTGCCTTCAGAGCTGAAG+GGG | 0.557451 | 4.2:+4265406 | None:intergenic |
| AGATGCCAACCCCGAACTAT+CGG | 0.558854 | 4.2:-4265876 | MS.gene05973:CDS |
| GATAAATTACGTACAAGCAA+AGG | 0.571388 | 4.2:+4264702 | None:intergenic |
| GGTTTGACATCCTCTTTCCG+TGG | 0.585428 | 4.2:+4265101 | None:intergenic |
| ACTAGTCCAAAATCTAAGGA+AGG | 0.586333 | 4.2:-4265555 | MS.gene05973:CDS |
| GTTTGACATCCTCTTTCCGT+GGG | 0.592195 | 4.2:+4265102 | None:intergenic |
| GCAAGTTCGTATAAAAGTTG+AGG | 0.595408 | 4.2:-4265903 | MS.gene05973:CDS |
| ATTAGTGTCAGCAAGTCCCT+TGG | 0.597733 | 4.2:+4265673 | None:intergenic |
| GACGAACCGTAAGCTTTCCA+AGG | 0.600753 | 4.2:-4265690 | MS.gene05973:CDS |
| AAGAAGTCAATGTTGCAGAA+AGG | 0.602008 | 4.2:-4265386 | MS.gene05973:CDS |
| AATTAAGCAGTCACTCAGGA+GGG | 0.606780 | 4.2:-4264908 | MS.gene05973:CDS |
| TGGTAGAAGAAAGCGTGCAT+GGG | 0.610649 | 4.2:-4265318 | MS.gene05973:CDS |
| TCTTTGCCTTCAGAGCTGAA+GGG | 0.611101 | 4.2:+4265405 | None:intergenic |
| CAATTAAGCAGTCACTCAGG+AGG | 0.619637 | 4.2:-4264909 | MS.gene05973:CDS |
| GTACAATTAAGCAGTCACTC+AGG | 0.623035 | 4.2:-4264912 | MS.gene05973:CDS |
| TGGTGCCAAAGTTGGCACAA+AGG | 0.626604 | 4.2:-4264865 | MS.gene05973:CDS |
| ATTAAGCAGTCACTCAGGAG+GGG | 0.627001 | 4.2:-4264907 | MS.gene05973:CDS |
| AAAAGAAAGAAAACATGACT+GGG | 0.634095 | 4.2:-4265631 | MS.gene05973:CDS |
| AGTTTATAGAGGATTTGTTG+CGG | 0.634669 | 4.2:+4265516 | None:intergenic |
| CAAGACTATTAAAGCAACAG+AGG | 0.636817 | 4.2:-4265015 | MS.gene05973:CDS |
| CCTTTAGGGCTGCTATAACA+GGG | 0.637214 | 4.2:-4265457 | MS.gene05973:CDS |
| AAGTACGTGAAAATCTAACA+AGG | 0.671379 | 4.2:-4265361 | MS.gene05973:CDS |
| ACGAACCGTAAGCTTTCCAA+GGG | 0.671646 | 4.2:-4265689 | MS.gene05973:CDS |
| AAGCTTCAACCGATAGTTCG+GGG | 0.688218 | 4.2:+4265867 | None:intergenic |
| AATGTTTAGAGCTAATGACT+CGG | 0.710307 | 4.2:-4265813 | MS.gene05973:CDS |
| AAAGTAGATAAGATTGTACG+TGG | 0.730669 | 4.2:-4264948 | MS.gene05973:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATGAATATAGTTAAA+GGG | - | chr4.2:4264913-4264932 | MS.gene05973:CDS | 10.0% |
| !! | GATATAATGAATATAGTTAA+AGG | - | chr4.2:4264912-4264931 | MS.gene05973:CDS | 15.0% |
| !!! | AATCTAACAAGGAAAATTTT+TGG | - | chr4.2:4265275-4265294 | MS.gene05973:CDS | 20.0% |
| !!! | ATCTAACAAGGAAAATTTTT+GGG | - | chr4.2:4265276-4265295 | MS.gene05973:CDS | 20.0% |
| !!! | TTATTTACAAGTTCAGTTTT+AGG | + | chr4.2:4265194-4265213 | None:intergenic | 20.0% |
| ! | AAAAGAAAGAAAACATGACT+GGG | - | chr4.2:4264994-4265013 | MS.gene05973:CDS | 25.0% |
| ! | ATATACAATCTGGAAAGAAT+TGG | + | chr4.2:4265485-4265504 | None:intergenic | 25.0% |
| ! | GAAAGGTGATAAAAGAAAAT+GGG | - | chr4.2:4265808-4265827 | MS.gene05973:CDS | 25.0% |
| ! | TGAAAGGTGATAAAAGAAAA+TGG | - | chr4.2:4265807-4265826 | MS.gene05973:CDS | 25.0% |
| ! | TTTCTCAGATAAACAAACTT+TGG | + | chr4.2:4265657-4265676 | None:intergenic | 25.0% |
| !! | CGAGAAGATTTTTATCAAAA+TGG | + | chr4.2:4265145-4265164 | None:intergenic | 25.0% |
| !! | TAATTTCCTTCCTTAGATTT+TGG | + | chr4.2:4265079-4265098 | None:intergenic | 25.0% |
| !! | TTTAAAACATTCTCCAACAA+AGG | - | chr4.2:4264875-4264894 | MS.gene05973:CDS | 25.0% |
| !!! | GTTGGAGAATGTTTTAAAAT+GGG | + | chr4.2:4264873-4264892 | None:intergenic | 25.0% |
| !!! | TGTTGGAGAATGTTTTAAAA+TGG | + | chr4.2:4264874-4264893 | None:intergenic | 25.0% |
| AAAGTAGATAAGATTGTACG+TGG | - | chr4.2:4265677-4265696 | MS.gene05973:CDS | 30.0% | |
| AAGTACGTGAAAATCTAACA+AGG | - | chr4.2:4265264-4265283 | MS.gene05973:CDS | 30.0% | |
| CAAATCCTCTATAAACTTTG+AGG | - | chr4.2:4265115-4265134 | MS.gene05973:CDS | 30.0% | |
| CTTAAATCTGATTCTGTGAA+AGG | - | chr4.2:4265791-4265810 | MS.gene05973:CDS | 30.0% | |
| CTTTCACAGAATCAGATTTA+AGG | + | chr4.2:4265793-4265812 | None:intergenic | 30.0% | |
| GAAAAGAAAGAAAACATGAC+TGG | - | chr4.2:4264993-4265012 | MS.gene05973:CDS | 30.0% | |
| TGTATCTGCTATATACAATC+TGG | + | chr4.2:4265495-4265514 | None:intergenic | 30.0% | |
| TTGTCATCAACAGATTGATT+TGG | + | chr4.2:4265593-4265612 | None:intergenic | 30.0% | |
| ! | AATGTTTAGAGCTAATGACT+CGG | - | chr4.2:4264812-4264831 | MS.gene05973:CDS | 30.0% |
| ! | GAAGACGATGCAATTTTTAA+GGG | - | chr4.2:4265893-4265912 | MS.gene05973:CDS | 30.0% |
| ! | GTTTTCCTCAAAGTTTATAG+AGG | + | chr4.2:4265123-4265142 | None:intergenic | 30.0% |
| !! | AGTTTATAGAGGATTTGTTG+CGG | + | chr4.2:4265112-4265131 | None:intergenic | 30.0% |
| !! | TTTAAAGTTTCGACCTTTTC+AGG | + | chr4.2:4265386-4265405 | None:intergenic | 30.0% |
| !!! | AAAATTTTTGGGACATCCAA+TGG | - | chr4.2:4265287-4265306 | MS.gene05973:CDS | 30.0% |
| AAAATCTTCTCGAAGCCTTT+AGG | - | chr4.2:4265153-4265172 | MS.gene05973:CDS | 35.0% | |
| AAATCTTCTCGAAGCCTTTA+GGG | - | chr4.2:4265154-4265173 | MS.gene05973:CDS | 35.0% | |
| AAGAAGTCAATGTTGCAGAA+AGG | - | chr4.2:4265239-4265258 | MS.gene05973:CDS | 35.0% | |
| ACTAGTCCAAAATCTAAGGA+AGG | - | chr4.2:4265070-4265089 | MS.gene05973:CDS | 35.0% | |
| ATGAAGAGAGTTTCTGATGA+TGG | - | chr4.2:4265035-4265054 | MS.gene05973:CDS | 35.0% | |
| CAAAATAATCCGTCAGCAAA+AGG | - | chr4.2:4265566-4265585 | MS.gene05973:CDS | 35.0% | |
| CAAGACTATTAAAGCAACAG+AGG | - | chr4.2:4265610-4265629 | MS.gene05973:CDS | 35.0% | |
| CTTAATTGTACTTTACCAGC+TGG | + | chr4.2:4265704-4265723 | None:intergenic | 35.0% | |
| GCAAGTTCGTATAAAAGTTG+AGG | - | chr4.2:4264722-4264741 | MS.gene05973:CDS | 35.0% | |
| TCTGGAAAGAATTGGATTCT+TGG | + | chr4.2:4265477-4265496 | None:intergenic | 35.0% | |
| TGATAAAAGAAAATGGGCCT+TGG | - | chr4.2:4265814-4265833 | MS.gene05973:CDS | 35.0% | |
| ! | GGAAGACGATGCAATTTTTA+AGG | - | chr4.2:4265892-4265911 | MS.gene05973:CDS | 35.0% |
| ! | GGGATTGTGAAATTGAGTTT+TGG | - | chr4.2:4265333-4265352 | MS.gene05973:CDS | 35.0% |
| AAAGTTGGCACAAAGGAATC+TGG | - | chr4.2:4265767-4265786 | MS.gene05973:CDS | 40.0% | |
| AAGAAAACATGACTGGGTTG+AGG | - | chr4.2:4265000-4265019 | MS.gene05973:CDS | 40.0% | |
| AATTAAGCAGTCACTCAGGA+GGG | - | chr4.2:4265717-4265736 | MS.gene05973:CDS | 40.0% | |
| AGAGGATGTCAAACCTTTCT+CGG | - | chr4.2:4265532-4265551 | MS.gene05973:CDS | 40.0% | |
| AGATTCCTTTGTGCCAACTT+TGG | + | chr4.2:4265768-4265787 | None:intergenic | 40.0% | |
| CCTCACTAGTCCAAAATCTA+AGG | - | chr4.2:4265066-4265085 | MS.gene05973:CDS | 40.0% | |
| GAACACAGCAAATGAAAGTC+AGG | - | chr4.2:4265871-4265890 | MS.gene05973:CDS | 40.0% | |
| GAGAGCTTCAAAACCTGAAA+AGG | - | chr4.2:4265370-4265389 | MS.gene05973:CDS | 40.0% | |
| GTACAATTAAGCAGTCACTC+AGG | - | chr4.2:4265713-4265732 | MS.gene05973:CDS | 40.0% | |
| TAAAAGAAAATGGGCCTTGG+AGG | - | chr4.2:4265817-4265836 | MS.gene05973:CDS | 40.0% | |
| TGAAGCTTCAACCGATAGTT+CGG | + | chr4.2:4264763-4264782 | None:intergenic | 40.0% | |
| TGTTTAGTCTGTTCCGAGAA+AGG | + | chr4.2:4265548-4265567 | None:intergenic | 40.0% | |
| ! | AGAAAACATGACTGGGTTGA+GGG | - | chr4.2:4265001-4265020 | MS.gene05973:CDS | 40.0% |
| ! | CAGATACATCTGTTTTCCCA+CGG | - | chr4.2:4265507-4265526 | MS.gene05973:CDS | 40.0% |
| !!! | CCTTAGATTTTGGACTAGTG+AGG | + | chr4.2:4265069-4265088 | None:intergenic | 40.0% |
| !!! | TGATTTGGTCCTTTTGCTGA+CGG | + | chr4.2:4265578-4265597 | None:intergenic | 40.0% |
| AAGCTTCAACCGATAGTTCG+GGG | + | chr4.2:4264761-4264780 | None:intergenic | 45.0% | |
| ACGAACCGTAAGCTTTCCAA+GGG | - | chr4.2:4264936-4264955 | MS.gene05973:CDS | 45.0% | |
| ATTAAGCAGTCACTCAGGAG+GGG | - | chr4.2:4265718-4265737 | MS.gene05973:CDS | 45.0% | |
| ATTAGTGTCAGCAAGTCCCT+TGG | + | chr4.2:4264955-4264974 | None:intergenic | 45.0% | |
| CAAGTCCCTTGGAAAGCTTA+CGG | + | chr4.2:4264944-4264963 | None:intergenic | 45.0% | |
| CAATTAAGCAGTCACTCAGG+AGG | - | chr4.2:4265716-4265735 | MS.gene05973:CDS | 45.0% | |
| GAAGCTTCAACCGATAGTTC+GGG | + | chr4.2:4264762-4264781 | None:intergenic | 45.0% | |
| GATGCTGCAATCTCCTTTGT+TGG | + | chr4.2:4264891-4264910 | None:intergenic | 45.0% | |
| GCATCAGTTTCTTCTTCAGC+TGG | - | chr4.2:4265740-4265759 | MS.gene05973:CDS | 45.0% | |
| GTTTGACATCCTCTTTCCGT+GGG | + | chr4.2:4265526-4265545 | None:intergenic | 45.0% | |
| TCTTTGCCTTCAGAGCTGAA+GGG | + | chr4.2:4265223-4265242 | None:intergenic | 45.0% | |
| TGCACGCTTTCTTCTACCAT+TGG | + | chr4.2:4265306-4265325 | None:intergenic | 45.0% | |
| TGGATTCTTGGCCTGACATT+CGG | + | chr4.2:4265465-4265484 | None:intergenic | 45.0% | |
| TTCTTTGCCTTCAGAGCTGA+AGG | + | chr4.2:4265224-4265243 | None:intergenic | 45.0% | |
| ! | AAGAAAGCGTGCATGGGATA+GGG | - | chr4.2:4265313-4265332 | MS.gene05973:CDS | 45.0% |
| ! | ATCTGTTTTCCCACGGAAAG+AGG | - | chr4.2:4265514-4265533 | MS.gene05973:CDS | 45.0% |
| ! | ATGGTAGAAGAAAGCGTGCA+TGG | - | chr4.2:4265306-4265325 | MS.gene05973:CDS | 45.0% |
| ! | TGGTAGAAGAAAGCGTGCAT+GGG | - | chr4.2:4265307-4265326 | MS.gene05973:CDS | 45.0% |
| ! | TTTTCTCGCAAGAACCTCCA+AGG | + | chr4.2:4265834-4265853 | None:intergenic | 45.0% |
| !! | CCTTTAGGGCTGCTATAACA+GGG | - | chr4.2:4265168-4265187 | MS.gene05973:CDS | 45.0% |
| AAGATTGTACGTGGTCCAGC+TGG | - | chr4.2:4265686-4265705 | MS.gene05973:CDS | 50.0% | |
| AGATGCCAACCCCGAACTAT+CGG | - | chr4.2:4264749-4264768 | MS.gene05973:CDS | 50.0% | |
| CATTTGACTAGCAGCTGCTC+TGG | + | chr4.2:4264796-4264815 | None:intergenic | 50.0% | |
| CCCTGTTATAGCAGCCCTAA+AGG | + | chr4.2:4265171-4265190 | None:intergenic | 50.0% | |
| CTTTGCCTTCAGAGCTGAAG+GGG | + | chr4.2:4265222-4265241 | None:intergenic | 50.0% | |
| GACGAACCGTAAGCTTTCCA+AGG | - | chr4.2:4264935-4264954 | MS.gene05973:CDS | 50.0% | |
| GGATTCTTGGCCTGACATTC+GGG | + | chr4.2:4265464-4265483 | None:intergenic | 50.0% | |
| GGTTTGACATCCTCTTTCCG+TGG | + | chr4.2:4265527-4265546 | None:intergenic | 50.0% | |
| TTCAACCGATAGTTCGGGGT+TGG | + | chr4.2:4264757-4264776 | None:intergenic | 50.0% | |
| ! | GAAGAAAGCGTGCATGGGAT+AGG | - | chr4.2:4265312-4265331 | MS.gene05973:CDS | 50.0% |
| ! | GTTATCCCCTTCAGCTCTGA+AGG | - | chr4.2:4265214-4265233 | MS.gene05973:CDS | 50.0% |
| ! | TCTTCAGCTGGTGCCAAAGT+TGG | - | chr4.2:4265752-4265771 | MS.gene05973:CDS | 50.0% |
| ! | TGGTGCCAAAGTTGGCACAA+AGG | - | chr4.2:4265760-4265779 | MS.gene05973:CDS | 50.0% |
| !! | GCCTTTAGGGCTGCTATAAC+AGG | - | chr4.2:4265167-4265186 | MS.gene05973:CDS | 50.0% |
| AGAGCGAGCTCCCGAATGTC+AGG | - | chr4.2:4265451-4265470 | MS.gene05973:CDS | 60.0% | |
| CGGGAGCTCGCTCTGATTCT+GGG | + | chr4.2:4265445-4265464 | None:intergenic | 60.0% | |
| TCGGGAGCTCGCTCTGATTC+TGG | + | chr4.2:4265446-4265465 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 4264716 | 4265931 | 4264716 | ID=MS.gene05973 |
| chr4.2 | mRNA | 4264716 | 4265931 | 4264716 | ID=MS.gene05973.t1;Parent=MS.gene05973 |
| chr4.2 | exon | 4264716 | 4265931 | 4264716 | ID=MS.gene05973.t1.exon1;Parent=MS.gene05973.t1 |
| chr4.2 | CDS | 4264716 | 4265931 | 4264716 | ID=cds.MS.gene05973.t1;Parent=MS.gene05973.t1 |
| Gene Sequence |
| Protein sequence |
