Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061446.t1 | XP_013453159.1 | 96.9 | 710 | 22 | 0 | 1 | 710 | 1 | 710 | 1.90E-283 | 984.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061446.t1 | Q8S8N9 | 49.6 | 722 | 303 | 12 | 1 | 689 | 1 | 694 | 3.9e-128 | 460.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061446.t1 | A0A072UC24 | 96.9 | 710 | 22 | 0 | 1 | 710 | 1 | 710 | 1.4e-283 | 984.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene061446 | 0.866305 | 3.14E-65 | -1.69E-46 |
| MS.gene052307 | MS.gene061446 | 0.849963 | 2.31E-60 | -1.69E-46 |
| MS.gene052311 | MS.gene061446 | 0.808595 | 2.87E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene061446 | 0.806175 | 9.35E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene061446 | 0.830842 | 2.34E-55 | -1.69E-46 |
| MS.gene053079 | MS.gene061446 | 0.825702 | 4.06E-54 | -1.69E-46 |
| MS.gene054943 | MS.gene061446 | 0.824532 | 7.67E-54 | -1.69E-46 |
| MS.gene055313 | MS.gene061446 | 0.8008 | 1.22E-48 | -1.69E-46 |
| MS.gene055513 | MS.gene061446 | 0.857593 | 1.47E-62 | -1.69E-46 |
| MS.gene055864 | MS.gene061446 | 0.81137 | 7.24E-51 | -1.69E-46 |
| MS.gene056181 | MS.gene061446 | 0.803457 | 3.45E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene061446 | 0.801379 | 9.26E-49 | -1.69E-46 |
| MS.gene058649 | MS.gene061446 | 0.809491 | 1.84E-50 | -1.69E-46 |
| MS.gene059570 | MS.gene061446 | 0.909916 | 3.35E-82 | -1.69E-46 |
| MS.gene060637 | MS.gene061446 | 0.807416 | 5.11E-50 | -1.69E-46 |
| MS.gene061100 | MS.gene061446 | 0.803934 | 2.75E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061446.t1 | MTR_6g088595 | 98.310 | 710 | 12 | 0 | 1 | 710 | 1 | 710 | 0.0 | 1412 |
| MS.gene061446.t1 | MTR_8g107060 | 25.725 | 276 | 191 | 6 | 408 | 680 | 377 | 641 | 1.06e-11 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061446.t1 | AT2G19950 | 61.313 | 716 | 231 | 12 | 1 | 689 | 1 | 697 | 0.0 | 791 |
| MS.gene061446.t1 | AT2G19950 | 61.119 | 715 | 231 | 12 | 1 | 689 | 1 | 694 | 0.0 | 789 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 43328 | gene | 9275 | 17878 | 9275 | ID=MS.gene061446 |
| 43328 | mRNA | 9275 | 17878 | 9275 | ID=MS.gene061446.t1;Parent=MS.gene061446 |
| 43328 | exon | 17851 | 17878 | 17851 | ID=MS.gene061446.t1.exon1;Parent=MS.gene061446.t1 |
| 43328 | CDS | 17851 | 17878 | 17851 | ID=cds.MS.gene061446.t1;Parent=MS.gene061446.t1 |
| 43328 | exon | 16342 | 16422 | 16342 | ID=MS.gene061446.t1.exon2;Parent=MS.gene061446.t1 |
| 43328 | CDS | 16342 | 16422 | 16342 | ID=cds.MS.gene061446.t1;Parent=MS.gene061446.t1 |
| 43328 | exon | 15850 | 15899 | 15850 | ID=MS.gene061446.t1.exon3;Parent=MS.gene061446.t1 |
| 43328 | CDS | 15850 | 15899 | 15850 | ID=cds.MS.gene061446.t1;Parent=MS.gene061446.t1 |
| 43328 | exon | 15149 | 15772 | 15149 | ID=MS.gene061446.t1.exon4;Parent=MS.gene061446.t1 |
| 43328 | CDS | 15149 | 15772 | 15149 | ID=cds.MS.gene061446.t1;Parent=MS.gene061446.t1 |
| 43328 | exon | 14994 | 15056 | 14994 | ID=MS.gene061446.t1.exon5;Parent=MS.gene061446.t1 |
| 43328 | CDS | 14994 | 15056 | 14994 | ID=cds.MS.gene061446.t1;Parent=MS.gene061446.t1 |
| 43328 | exon | 14771 | 14848 | 14771 | ID=MS.gene061446.t1.exon6;Parent=MS.gene061446.t1 |
| 43328 | CDS | 14771 | 14848 | 14771 | ID=cds.MS.gene061446.t1;Parent=MS.gene061446.t1 |
| 43328 | exon | 14466 | 14669 | 14466 | ID=MS.gene061446.t1.exon7;Parent=MS.gene061446.t1 |
| 43328 | CDS | 14466 | 14669 | 14466 | ID=cds.MS.gene061446.t1;Parent=MS.gene061446.t1 |
| 43328 | exon | 13227 | 13283 | 13227 | ID=MS.gene061446.t1.exon8;Parent=MS.gene061446.t1 |
| 43328 | CDS | 13227 | 13283 | 13227 | ID=cds.MS.gene061446.t1;Parent=MS.gene061446.t1 |
| 43328 | exon | 13056 | 13130 | 13056 | ID=MS.gene061446.t1.exon9;Parent=MS.gene061446.t1 |
| 43328 | CDS | 13056 | 13130 | 13056 | ID=cds.MS.gene061446.t1;Parent=MS.gene061446.t1 |
| 43328 | exon | 12905 | 12976 | 12905 | ID=MS.gene061446.t1.exon10;Parent=MS.gene061446.t1 |
| 43328 | CDS | 12905 | 12976 | 12905 | ID=cds.MS.gene061446.t1;Parent=MS.gene061446.t1 |
| 43328 | exon | 11950 | 12012 | 11950 | ID=MS.gene061446.t1.exon11;Parent=MS.gene061446.t1 |
| 43328 | CDS | 11950 | 12012 | 11950 | ID=cds.MS.gene061446.t1;Parent=MS.gene061446.t1 |
| 43328 | exon | 11736 | 11834 | 11736 | ID=MS.gene061446.t1.exon12;Parent=MS.gene061446.t1 |
| 43328 | CDS | 11736 | 11834 | 11736 | ID=cds.MS.gene061446.t1;Parent=MS.gene061446.t1 |
| 43328 | exon | 10861 | 10938 | 10861 | ID=MS.gene061446.t1.exon13;Parent=MS.gene061446.t1 |
| 43328 | CDS | 10861 | 10938 | 10861 | ID=cds.MS.gene061446.t1;Parent=MS.gene061446.t1 |
| 43328 | exon | 10685 | 10753 | 10685 | ID=MS.gene061446.t1.exon14;Parent=MS.gene061446.t1 |
| 43328 | CDS | 10685 | 10753 | 10685 | ID=cds.MS.gene061446.t1;Parent=MS.gene061446.t1 |
| 43328 | exon | 10487 | 10534 | 10487 | ID=MS.gene061446.t1.exon15;Parent=MS.gene061446.t1 |
| 43328 | CDS | 10487 | 10534 | 10487 | ID=cds.MS.gene061446.t1;Parent=MS.gene061446.t1 |
| 43328 | exon | 10311 | 10406 | 10311 | ID=MS.gene061446.t1.exon16;Parent=MS.gene061446.t1 |
| 43328 | CDS | 10311 | 10406 | 10311 | ID=cds.MS.gene061446.t1;Parent=MS.gene061446.t1 |
| 43328 | exon | 10156 | 10232 | 10156 | ID=MS.gene061446.t1.exon17;Parent=MS.gene061446.t1 |
| 43328 | CDS | 10156 | 10232 | 10156 | ID=cds.MS.gene061446.t1;Parent=MS.gene061446.t1 |
| 43328 | exon | 9814 | 9859 | 9814 | ID=MS.gene061446.t1.exon18;Parent=MS.gene061446.t1 |
| 43328 | CDS | 9814 | 9859 | 9814 | ID=cds.MS.gene061446.t1;Parent=MS.gene061446.t1 |
| 43328 | exon | 9631 | 9729 | 9631 | ID=MS.gene061446.t1.exon19;Parent=MS.gene061446.t1 |
| 43328 | CDS | 9631 | 9729 | 9631 | ID=cds.MS.gene061446.t1;Parent=MS.gene061446.t1 |
| 43328 | exon | 9490 | 9534 | 9490 | ID=MS.gene061446.t1.exon20;Parent=MS.gene061446.t1 |
| 43328 | CDS | 9490 | 9534 | 9490 | ID=cds.MS.gene061446.t1;Parent=MS.gene061446.t1 |
| 43328 | exon | 9275 | 9364 | 9275 | ID=MS.gene061446.t1.exon21;Parent=MS.gene061446.t1 |
| 43328 | CDS | 9275 | 9364 | 9275 | ID=cds.MS.gene061446.t1;Parent=MS.gene061446.t1 |
| Gene Sequence |
| Protein sequence |
