Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47469.t1 | AET03315.1 | 97.9 | 338 | 7 | 0 | 1 | 338 | 9 | 346 | 5.90E-188 | 666.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47469.t1 | Q38827 | 63.2 | 329 | 114 | 3 | 8 | 336 | 3 | 324 | 9.4e-110 | 398.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47469.t1 | B7FIH2 | 97.9 | 338 | 7 | 0 | 1 | 338 | 1 | 338 | 4.3e-188 | 666.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene47469.t1 | TR | AUX/IAA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47469 | MS.gene05894 | PPI |
| MS.gene68989 | MS.gene47469 | PPI |
| MS.gene015771 | MS.gene47469 | PPI |
| MS.gene061505 | MS.gene47469 | PPI |
| MS.gene04738 | MS.gene47469 | PPI |
| MS.gene049100 | MS.gene47469 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47469.t1 | MTR_8g067530 | 97.929 | 338 | 7 | 0 | 1 | 338 | 9 | 346 | 0.0 | 677 |
| MS.gene47469.t1 | MTR_5g030710 | 71.347 | 349 | 65 | 7 | 1 | 338 | 1 | 325 | 1.36e-173 | 486 |
| MS.gene47469.t1 | MTR_5g067350 | 56.069 | 346 | 130 | 9 | 3 | 338 | 4 | 337 | 7.88e-118 | 345 |
| MS.gene47469.t1 | MTR_2g101500 | 49.085 | 328 | 122 | 10 | 39 | 338 | 6 | 316 | 9.18e-92 | 278 |
| MS.gene47469.t1 | MTR_6g488150 | 54.643 | 280 | 85 | 6 | 59 | 338 | 7 | 244 | 1.23e-90 | 273 |
| MS.gene47469.t1 | MTR_8g103030 | 49.502 | 301 | 105 | 9 | 56 | 338 | 12 | 283 | 3.68e-85 | 260 |
| MS.gene47469.t1 | MTR_5g067350 | 55.556 | 243 | 96 | 7 | 38 | 270 | 32 | 272 | 1.91e-72 | 227 |
| MS.gene47469.t1 | MTR_1g080860 | 44.128 | 281 | 96 | 7 | 67 | 338 | 15 | 243 | 1.31e-62 | 201 |
| MS.gene47469.t1 | MTR_1g080860 | 44.643 | 280 | 92 | 8 | 67 | 336 | 15 | 241 | 8.97e-62 | 198 |
| MS.gene47469.t1 | MTR_1g093240 | 62.092 | 153 | 54 | 2 | 188 | 338 | 76 | 226 | 3.34e-61 | 197 |
| MS.gene47469.t1 | MTR_7g096090 | 60.000 | 155 | 60 | 1 | 184 | 338 | 88 | 240 | 3.79e-61 | 197 |
| MS.gene47469.t1 | MTR_1g093240 | 62.252 | 151 | 53 | 2 | 188 | 336 | 76 | 224 | 5.94e-60 | 194 |
| MS.gene47469.t1 | MTR_1g070520 | 61.392 | 158 | 54 | 3 | 186 | 338 | 80 | 235 | 9.04e-60 | 193 |
| MS.gene47469.t1 | MTR_1g070830 | 40.860 | 279 | 84 | 11 | 58 | 336 | 4 | 201 | 1.51e-48 | 163 |
| MS.gene47469.t1 | MTR_6g488150 | 48.585 | 212 | 67 | 6 | 59 | 270 | 7 | 176 | 4.93e-48 | 161 |
| MS.gene47469.t1 | MTR_1g093240 | 60.305 | 131 | 48 | 2 | 188 | 316 | 76 | 204 | 1.70e-47 | 160 |
| MS.gene47469.t1 | MTR_1g040675 | 38.889 | 270 | 77 | 7 | 67 | 336 | 1 | 182 | 4.73e-46 | 156 |
| MS.gene47469.t1 | MTR_1g076270 | 46.739 | 184 | 68 | 6 | 157 | 336 | 21 | 178 | 1.69e-44 | 151 |
| MS.gene47469.t1 | MTR_1g093350 | 46.739 | 184 | 68 | 6 | 157 | 336 | 21 | 178 | 1.69e-44 | 151 |
| MS.gene47469.t1 | MTR_1g040675 | 36.400 | 250 | 71 | 7 | 67 | 316 | 1 | 162 | 1.33e-34 | 125 |
| MS.gene47469.t1 | MTR_8g014520 | 39.205 | 176 | 89 | 3 | 174 | 332 | 86 | 260 | 5.39e-33 | 124 |
| MS.gene47469.t1 | MTR_8g014520 | 39.205 | 176 | 89 | 3 | 174 | 332 | 86 | 260 | 5.41e-33 | 124 |
| MS.gene47469.t1 | MTR_1g069495 | 39.474 | 190 | 82 | 4 | 194 | 350 | 81 | 270 | 7.85e-33 | 124 |
| MS.gene47469.t1 | MTR_4g011880 | 50.694 | 144 | 42 | 4 | 193 | 336 | 52 | 166 | 2.17e-32 | 120 |
| MS.gene47469.t1 | MTR_2g100780 | 39.362 | 188 | 91 | 5 | 167 | 332 | 68 | 254 | 2.47e-29 | 114 |
| MS.gene47469.t1 | MTR_2g100780 | 39.362 | 188 | 91 | 5 | 167 | 332 | 68 | 254 | 2.97e-29 | 114 |
| MS.gene47469.t1 | MTR_2g102490 | 46.341 | 123 | 54 | 3 | 212 | 331 | 70 | 183 | 2.44e-28 | 110 |
| MS.gene47469.t1 | MTR_4g124300 | 33.987 | 153 | 72 | 5 | 182 | 331 | 56 | 182 | 2.64e-18 | 82.4 |
| MS.gene47469.t1 | MTR_1g085750 | 39.091 | 110 | 52 | 2 | 227 | 336 | 82 | 176 | 1.26e-16 | 77.4 |
| MS.gene47469.t1 | MTR_3g106850 | 28.662 | 157 | 78 | 4 | 185 | 332 | 78 | 209 | 2.88e-16 | 77.4 |
| MS.gene47469.t1 | MTR_7g110790 | 40.777 | 103 | 45 | 3 | 228 | 329 | 68 | 155 | 2.15e-15 | 73.6 |
| MS.gene47469.t1 | MTR_1g109510 | 30.769 | 143 | 78 | 4 | 188 | 329 | 46 | 168 | 7.06e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47469.t1 | AT5G65670 | 64.653 | 331 | 110 | 3 | 8 | 338 | 3 | 326 | 4.82e-143 | 409 |
| MS.gene47469.t1 | AT5G65670 | 64.545 | 330 | 110 | 3 | 8 | 337 | 3 | 325 | 2.84e-142 | 407 |
| MS.gene47469.t1 | AT2G22670 | 65.385 | 312 | 85 | 7 | 33 | 338 | 15 | 309 | 3.01e-134 | 386 |
| MS.gene47469.t1 | AT2G22670 | 65.385 | 312 | 85 | 7 | 33 | 338 | 15 | 309 | 3.01e-134 | 386 |
| MS.gene47469.t1 | AT2G22670 | 65.385 | 312 | 85 | 7 | 33 | 338 | 32 | 326 | 4.03e-134 | 386 |
| MS.gene47469.t1 | AT2G22670 | 65.484 | 310 | 84 | 7 | 33 | 336 | 15 | 307 | 2.41e-133 | 384 |
| MS.gene47469.t1 | AT2G22670 | 65.484 | 310 | 84 | 7 | 33 | 336 | 15 | 307 | 2.41e-133 | 384 |
| MS.gene47469.t1 | AT4G29080 | 48.297 | 323 | 113 | 9 | 39 | 340 | 8 | 297 | 5.65e-85 | 260 |
| MS.gene47469.t1 | AT4G14550 | 43.956 | 273 | 97 | 7 | 67 | 338 | 1 | 218 | 9.31e-64 | 203 |
| MS.gene47469.t1 | AT4G14550 | 42.960 | 277 | 102 | 7 | 67 | 342 | 1 | 222 | 6.37e-63 | 201 |
| MS.gene47469.t1 | AT1G04250 | 43.590 | 273 | 93 | 8 | 67 | 338 | 7 | 219 | 1.07e-60 | 195 |
| MS.gene47469.t1 | AT3G04730 | 41.463 | 287 | 91 | 7 | 67 | 338 | 2 | 226 | 3.77e-60 | 194 |
| MS.gene47469.t1 | AT3G23050 | 41.135 | 282 | 101 | 8 | 67 | 338 | 6 | 232 | 2.91e-59 | 192 |
| MS.gene47469.t1 | AT4G14550 | 41.600 | 250 | 90 | 7 | 67 | 315 | 1 | 195 | 6.47e-50 | 166 |
| MS.gene47469.t1 | AT3G23050 | 38.846 | 260 | 94 | 8 | 67 | 316 | 6 | 210 | 3.03e-45 | 154 |
| MS.gene47469.t1 | AT1G04240 | 53.691 | 149 | 49 | 4 | 188 | 336 | 57 | 185 | 4.12e-45 | 154 |
| MS.gene47469.t1 | AT1G04240 | 53.691 | 149 | 49 | 4 | 188 | 336 | 157 | 285 | 2.08e-44 | 155 |
| MS.gene47469.t1 | AT5G43700 | 50.641 | 156 | 53 | 5 | 181 | 336 | 50 | 181 | 4.06e-42 | 145 |
| MS.gene47469.t1 | AT3G23030 | 49.664 | 149 | 44 | 2 | 188 | 336 | 53 | 170 | 3.69e-40 | 140 |
| MS.gene47469.t1 | AT3G23030 | 49.664 | 149 | 44 | 2 | 188 | 336 | 140 | 257 | 1.65e-39 | 141 |
| MS.gene47469.t1 | AT3G15540 | 46.667 | 165 | 63 | 5 | 173 | 336 | 48 | 188 | 1.63e-35 | 129 |
| MS.gene47469.t1 | AT1G52830 | 44.966 | 149 | 55 | 4 | 188 | 336 | 63 | 184 | 2.93e-35 | 128 |
| MS.gene47469.t1 | AT1G15580 | 46.853 | 143 | 44 | 3 | 190 | 331 | 48 | 159 | 2.33e-34 | 124 |
| MS.gene47469.t1 | AT1G04550 | 43.103 | 174 | 68 | 5 | 187 | 338 | 61 | 225 | 9.21e-34 | 125 |
| MS.gene47469.t1 | AT2G33310 | 43.820 | 178 | 66 | 6 | 183 | 336 | 63 | 230 | 1.16e-33 | 125 |
| MS.gene47469.t1 | AT2G33310 | 43.820 | 178 | 66 | 6 | 183 | 336 | 63 | 230 | 1.16e-33 | 125 |
| MS.gene47469.t1 | AT4G14560 | 49.306 | 144 | 44 | 3 | 190 | 333 | 50 | 164 | 3.14e-33 | 122 |
| MS.gene47469.t1 | AT4G28640 | 41.040 | 173 | 74 | 4 | 188 | 340 | 81 | 245 | 4.57e-33 | 124 |
| MS.gene47469.t1 | AT2G33310 | 40.704 | 199 | 80 | 7 | 162 | 336 | 47 | 231 | 8.30e-33 | 123 |
| MS.gene47469.t1 | AT4G28640 | 42.262 | 168 | 69 | 4 | 188 | 335 | 81 | 240 | 1.21e-32 | 123 |
| MS.gene47469.t1 | AT4G28640 | 42.262 | 168 | 69 | 4 | 188 | 335 | 81 | 240 | 9.69e-32 | 122 |
| MS.gene47469.t1 | AT4G14550 | 37.745 | 204 | 73 | 6 | 67 | 269 | 1 | 151 | 2.93e-29 | 112 |
| MS.gene47469.t1 | AT3G16500 | 38.690 | 168 | 83 | 4 | 181 | 332 | 89 | 252 | 2.90e-28 | 111 |
| MS.gene47469.t1 | AT3G16500 | 38.690 | 168 | 83 | 4 | 181 | 332 | 89 | 252 | 3.16e-28 | 111 |
| MS.gene47469.t1 | AT1G04100 | 37.725 | 167 | 75 | 4 | 197 | 336 | 95 | 259 | 3.13e-27 | 108 |
| MS.gene47469.t1 | AT1G51950 | 39.241 | 158 | 71 | 4 | 196 | 332 | 97 | 250 | 6.99e-25 | 102 |
| MS.gene47469.t1 | AT3G23050 | 34.742 | 213 | 76 | 7 | 67 | 269 | 6 | 165 | 7.55e-25 | 99.8 |
| MS.gene47469.t1 | AT5G25890 | 37.931 | 145 | 68 | 2 | 194 | 338 | 47 | 169 | 9.00e-25 | 99.8 |
| MS.gene47469.t1 | AT3G17600 | 37.324 | 142 | 64 | 5 | 188 | 329 | 38 | 154 | 3.25e-22 | 92.4 |
| MS.gene47469.t1 | AT3G62100 | 39.423 | 104 | 48 | 2 | 226 | 329 | 80 | 168 | 6.71e-18 | 80.9 |
| MS.gene47469.t1 | AT2G46990 | 36.792 | 106 | 52 | 1 | 226 | 331 | 82 | 172 | 1.58e-17 | 79.7 |
| MS.gene47469.t1 | AT1G15050 | 36.190 | 105 | 51 | 1 | 230 | 334 | 62 | 150 | 1.08e-13 | 68.6 |
| MS.gene47469.t1 | AT1G15050 | 36.190 | 105 | 51 | 1 | 230 | 334 | 94 | 182 | 2.35e-13 | 68.6 |
| MS.gene47469.t1 | AT3G62100 | 38.462 | 91 | 41 | 2 | 226 | 316 | 80 | 155 | 7.91e-13 | 66.2 |
| MS.gene47469.t1 | AT2G46990 | 35.165 | 91 | 44 | 1 | 226 | 316 | 82 | 157 | 4.53e-12 | 63.9 |
| MS.gene47469.t1 | AT4G32280 | 30.693 | 101 | 50 | 2 | 229 | 329 | 118 | 198 | 2.93e-11 | 62.8 |
| MS.gene47469.t1 | AT2G01200 | 32.000 | 125 | 66 | 2 | 210 | 334 | 83 | 188 | 2.98e-11 | 62.4 |
| MS.gene47469.t1 | AT2G01200 | 32.000 | 125 | 66 | 2 | 210 | 334 | 83 | 188 | 2.98e-11 | 62.4 |
Find 97 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCTGTCGCCTTCAAATTT+AGG | 0.166961 | 8.4:-35271175 | None:intergenic |
| CTCTCTTGTACCACCTTCTT+TGG | 0.201829 | 8.4:-35271673 | None:intergenic |
| TTGCTCTGCCCTTCCTCTTC+AGG | 0.229134 | 8.4:-35270999 | None:intergenic |
| TCCCAGAAGACTGTTGTTTC+AGG | 0.240495 | 8.4:+35271326 | MS.gene47469:CDS |
| AGCTAGATAGATGCTATTAT+TGG | 0.249002 | 8.4:+35274219 | MS.gene47469:CDS |
| TGCCTGAAACAACAGTCTTC+TGG | 0.283080 | 8.4:-35271328 | None:intergenic |
| CTGCTTTCGCCAAGACCTTC+TGG | 0.286943 | 8.4:+35271622 | MS.gene47469:CDS |
| GAGTTAAGGCTCGGACTTCC+TGG | 0.311938 | 8.4:+35271194 | MS.gene47469:CDS |
| AAAAGATCAAGATCCCTTTC+AGG | 0.324520 | 8.4:-35271227 | None:intergenic |
| GCCTGAAACAACAGTCTTCT+GGG | 0.362984 | 8.4:-35271327 | None:intergenic |
| GGCCTCCTATTAGATCATTT+AGG | 0.366841 | 8.4:+35272082 | MS.gene47469:CDS |
| ACATCTGCAATGATCCTGTT+AGG | 0.378395 | 8.4:+35274076 | MS.gene47469:CDS |
| CAAGGTCAGACGACAGTTCC+TGG | 0.380173 | 8.4:-35272242 | None:intergenic |
| TGGATGGCGCTCCTTATCTT+AGG | 0.388317 | 8.4:+35272190 | MS.gene47469:CDS |
| CCAGTTCCATTTGCTGTACA+AGG | 0.388892 | 8.4:-35271697 | None:intergenic |
| CCTTTGCTTCCTAGTAAAGA+TGG | 0.391162 | 8.4:+35271290 | MS.gene47469:CDS |
| AGCTGGTGCACTGCCACTGA+TGG | 0.394017 | 8.4:-35271725 | None:intergenic |
| TTCTTCTCTTTGCAGCTCCA+AGG | 0.402863 | 8.4:+35274172 | MS.gene47469:intron |
| CTTTCAGGCGACTGAGATCC+AGG | 0.408190 | 8.4:-35271212 | None:intergenic |
| GAAACTTAACAATACCTAAC+AGG | 0.408771 | 8.4:-35274090 | None:intergenic |
| TGTGGTTCGCATGGAGCTCC+AGG | 0.419336 | 8.4:+35272430 | MS.gene47469:CDS |
| GGCATTTCTTTAACTGTAGT+AGG | 0.421367 | 8.4:-35271652 | None:intergenic |
| GCGATGCAGGCAAAATATAC+TGG | 0.428432 | 8.4:+35271580 | MS.gene47469:intron |
| CGGTTTGTCTGATTGCTCAT+CGG | 0.435647 | 8.4:+35271106 | MS.gene47469:CDS |
| ATCTATCTAGCTCCTGCTCT+TGG | 0.438286 | 8.4:-35274208 | None:intergenic |
| GCTAGATAGATGCTATTATT+GGG | 0.445855 | 8.4:+35274220 | MS.gene47469:CDS |
| TACGACAGAGCACAAGTTGT+TGG | 0.447586 | 8.4:+35272057 | MS.gene47469:intron |
| ATTTGAAGGCGACAGAGTTA+AGG | 0.448866 | 8.4:+35271180 | MS.gene47469:CDS |
| ATTATGATTGAAAGTGCCTC+TGG | 0.454965 | 8.4:+35274050 | MS.gene47469:intron |
| GAGAGCCCTTGTACAGCAAA+TGG | 0.456009 | 8.4:+35271691 | MS.gene47469:CDS |
| TCTTCTCTTTGCAGCTCCAA+GGG | 0.460018 | 8.4:+35274173 | MS.gene47469:intron |
| AAAAGAGAACCTAAATTTGA+AGG | 0.461528 | 8.4:+35271166 | MS.gene47469:CDS |
| GAGCAGATTCCATCTTTACT+AGG | 0.464937 | 8.4:-35271299 | None:intergenic |
| CTTTGCAGCTCCAAGGGCCA+TGG | 0.469634 | 8.4:+35274179 | MS.gene47469:intron |
| ATCTGCATCTCCACAATCCT+TGG | 0.473964 | 8.4:+35271037 | MS.gene47469:CDS |
| GCTGGTGCACTGCCACTGAT+GGG | 0.475390 | 8.4:-35271724 | None:intergenic |
| GTTGAGTGAGAGCAAATTGA+AGG | 0.479532 | 8.4:+35272462 | MS.gene47469:CDS |
| TCACTCAACATTTCTCTCCC+TGG | 0.480300 | 8.4:-35272448 | None:intergenic |
| TTCGTCATTGTTCTTTGAAG+TGG | 0.480383 | 8.4:-35272121 | None:intergenic |
| GATGGTGACTGGATGCTTGT+AGG | 0.487607 | 8.4:+35272529 | MS.gene47469:CDS |
| CTGGATCTCAGTCGCCTGAA+AGG | 0.489384 | 8.4:+35271213 | MS.gene47469:CDS |
| ATGAAGGGTTCTGATGCAAT+TGG | 0.489575 | 8.4:+35273244 | MS.gene47469:CDS |
| TGGATCTCAGTCGCCTGAAA+GGG | 0.490957 | 8.4:+35271214 | MS.gene47469:CDS |
| GTCATTGTTCTTTGAAGTGG+TGG | 0.492137 | 8.4:-35272118 | None:intergenic |
| CCTTGTACAGCAAATGGAAC+TGG | 0.501475 | 8.4:+35271697 | MS.gene47469:CDS |
| TTTGTGAAGGTTAGCATGGA+TGG | 0.502534 | 8.4:+35272174 | MS.gene47469:CDS |
| CATCTTTACTAGGAAGCAAA+GGG | 0.502801 | 8.4:-35271289 | None:intergenic |
| GATGCAGATGCTACCGTTGA+GGG | 0.502971 | 8.4:-35271023 | None:intergenic |
| TCCTCTTCAGGAAGCAGCAG+TGG | 0.503885 | 8.4:-35270987 | None:intergenic |
| TTCCTAAATGATCTAATAGG+AGG | 0.509027 | 8.4:-35272084 | None:intergenic |
| GCCACTGCTGCTTCCTGAAG+AGG | 0.511534 | 8.4:+35270986 | MS.gene47469:CDS |
| AGATCAACCTTCCTAAGATA+AGG | 0.512174 | 8.4:-35272201 | None:intergenic |
| GGTTCTGATGCAATTGGCCT+AGG | 0.516578 | 8.4:+35273250 | MS.gene47469:CDS |
| TGTTCTACTTACTTGGCAGC+TGG | 0.519150 | 8.4:-35271742 | None:intergenic |
| CAAAAGACTGAAAATCATGA+AGG | 0.520025 | 8.4:+35273228 | MS.gene47469:CDS |
| TTGAAAGAACGCAATTATCT+CGG | 0.521949 | 8.4:+35271086 | MS.gene47469:CDS |
| GTTGTTTCAGGCAACAAAAG+AGG | 0.523282 | 8.4:+35271338 | MS.gene47469:CDS |
| GGTGGAGCTCCAGAAGGTCT+TGG | 0.524873 | 8.4:-35271631 | None:intergenic |
| ACAAATAGTGCAGCTGCACC+AGG | 0.530129 | 8.4:-35272156 | None:intergenic |
| CCATCTTTACTAGGAAGCAA+AGG | 0.532897 | 8.4:-35271290 | None:intergenic |
| CCTGCATGGTTCTGAATATG+TGG | 0.554207 | 8.4:+35272489 | MS.gene47469:CDS |
| AGTTAAAGAAATGCCAAAGA+AGG | 0.560187 | 8.4:+35271660 | MS.gene47469:CDS |
| TGGCGCTCCTTATCTTAGGA+AGG | 0.560715 | 8.4:+35272194 | MS.gene47469:CDS |
| AAGAACAATGACGAAGTGGA+TGG | 0.561142 | 8.4:+35272129 | MS.gene47469:CDS |
| TCAGGTCAATGTGGTTCGCA+TGG | 0.563755 | 8.4:+35272421 | MS.gene47469:intron |
| ACAGAGCACAAGTTGTTGGT+TGG | 0.565232 | 8.4:+35272061 | MS.gene47469:intron |
| CTGCTGCTTCCTGAAGAGGA+AGG | 0.570185 | 8.4:+35270990 | MS.gene47469:CDS |
| CAGTTCCATTTGCTGTACAA+GGG | 0.574593 | 8.4:-35271696 | None:intergenic |
| GACGAAGTGGATGGAAAACC+TGG | 0.579600 | 8.4:+35272138 | MS.gene47469:CDS |
| TGCTGCTTCCTGAAGAGGAA+GGG | 0.582052 | 8.4:+35270991 | MS.gene47469:CDS |
| AACAGCTGAACATCTTCTCA+AGG | 0.587195 | 8.4:-35272260 | None:intergenic |
| ATGAAGATAAAGATGGTGAC+TGG | 0.592828 | 8.4:+35272518 | MS.gene47469:CDS |
| AAGGCGACAGAGTTAAGGCT+CGG | 0.594838 | 8.4:+35271185 | MS.gene47469:CDS |
| CCACATATTCAGAACCATGC+AGG | 0.602515 | 8.4:-35272489 | None:intergenic |
| TAAAGAAATGCCAAAGAAGG+TGG | 0.603403 | 8.4:+35271663 | MS.gene47469:CDS |
| TTCAAAGAACAATGACGAAG+TGG | 0.604897 | 8.4:+35272125 | MS.gene47469:CDS |
| TGCAGCTGCACTATTTGTGA+AGG | 0.608355 | 8.4:+35272161 | MS.gene47469:CDS |
| AAAAGACTGAAAATCATGAA+GGG | 0.608483 | 8.4:+35273229 | MS.gene47469:CDS |
| TCTTCAGGAAGCAGCAGTGG+CGG | 0.617802 | 8.4:-35270984 | None:intergenic |
| AGGAAACACTTCCAGTGTGT+CGG | 0.619955 | 8.4:-35271366 | None:intergenic |
| ATTTCTTTAACTGTAGTAGG+TGG | 0.621429 | 8.4:-35271649 | None:intergenic |
| AAATTGAAGGACTTCCTGCA+TGG | 0.622375 | 8.4:+35272475 | MS.gene47469:CDS |
| GTCACTTATGAAGATAAAGA+TGG | 0.623567 | 8.4:+35272511 | MS.gene47469:CDS |
| CTAGGAAGCAAAGGGAAGAG+CGG | 0.624666 | 8.4:-35271281 | None:intergenic |
| AGATGCAGATGCTACCGTTG+AGG | 0.626765 | 8.4:-35271024 | None:intergenic |
| GTAGTAGGTGGAGCTCCAGA+AGG | 0.630271 | 8.4:-35271637 | None:intergenic |
| GCTTGTAGGAGATGTACCAT+GGG | 0.634513 | 8.4:+35272543 | MS.gene47469:CDS |
| AGGGCAGAGCAACCCCTCAA+CGG | 0.635822 | 8.4:+35271010 | MS.gene47469:CDS |
| ACTATTTGTGAAGGTTAGCA+TGG | 0.640434 | 8.4:+35272170 | MS.gene47469:CDS |
| GGAACTGGAGCTCCCATCAG+TGG | 0.641227 | 8.4:+35271712 | MS.gene47469:CDS |
| GTGGTTCGCATGGAGCTCCA+GGG | 0.655439 | 8.4:+35272431 | MS.gene47469:CDS |
| AAGAAACTATACAACATACC+AGG | 0.665573 | 8.4:+35272224 | MS.gene47469:CDS |
| ATGCAGATGCTACCGTTGAG+GGG | 0.667822 | 8.4:-35271022 | None:intergenic |
| TGCTTGTAGGAGATGTACCA+TGG | 0.683935 | 8.4:+35272542 | MS.gene47469:CDS |
| CACACTGGAAGTGTTTCCTG+AGG | 0.707617 | 8.4:+35271370 | MS.gene47469:CDS |
| TGTACCTCATCAGGTCAATG+TGG | 0.718709 | 8.4:+35272412 | MS.gene47469:intron |
| TCATTGCAGATGTAAACCAG+AGG | 0.734688 | 8.4:-35274066 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTCAAAAAAAAAAAAAAATT+TGG | - | chr8.4:35273492-35273511 | None:intergenic | 10.0% |
| !! | GTAAAATATATAGAAATAAT+CGG | + | chr8.4:35271798-35271817 | MS.gene47469:intron | 10.0% |
| !!! | TATTATTTTGATATAGTTTA+GGG | + | chr8.4:35271927-35271946 | MS.gene47469:intron | 10.0% |
| !!! | TTATTATTTTGATATAGTTT+AGG | + | chr8.4:35271926-35271945 | MS.gene47469:intron | 10.0% |
| !!! | TTTTTTTATTCAAAATTGAT+AGG | - | chr8.4:35271511-35271530 | None:intergenic | 10.0% |
| !! | AATATATTAACTCTAGTAAA+AGG | - | chr8.4:35271414-35271433 | None:intergenic | 15.0% |
| !! | ATATATTAACACATTTCAAT+AGG | - | chr8.4:35273037-35273056 | None:intergenic | 15.0% |
| !! | ATTTACGTAACAAATTTAAA+AGG | - | chr8.4:35272881-35272900 | None:intergenic | 15.0% |
| !! | TGAATAAAAAAAAGATCAAA+TGG | + | chr8.4:35271519-35271538 | MS.gene47469:intron | 15.0% |
| !! | TGGACTATTTAATTAAATAA+GGG | + | chr8.4:35273806-35273825 | MS.gene47469:intron | 15.0% |
| !!! | TACTAGAGTTAATATATTTT+TGG | + | chr8.4:35271416-35271435 | MS.gene47469:intron | 15.0% |
| !!! | TATATCATTTAAGTTTATGT+TGG | + | chr8.4:35273391-35273410 | MS.gene47469:intron | 15.0% |
| !!! | TTTAAATTTGTTACGTAAAT+AGG | + | chr8.4:35272881-35272900 | MS.gene47469:intron | 15.0% |
| !! | AAATAGGAACATATAAGTTT+AGG | + | chr8.4:35272897-35272916 | MS.gene47469:intron | 20.0% |
| !! | ACTAAAGTGAAAATAATTTG+AGG | + | chr8.4:35273872-35273891 | MS.gene47469:intron | 20.0% |
| !! | ACTTAAACATTAAACATATC+AGG | - | chr8.4:35273334-35273353 | None:intergenic | 20.0% |
| !! | ATATAAGTTTAGGTATGTTA+TGG | + | chr8.4:35272907-35272926 | MS.gene47469:intron | 20.0% |
| !! | TTTGAATATAATGATTCAGT+TGG | + | chr8.4:35273990-35274009 | MS.gene47469:intron | 20.0% |
| !!! | ATAATGAATTTTACATACCT+AGG | - | chr8.4:35273270-35273289 | None:intergenic | 20.0% |
| !!! | CTCATTATAAGTGTTATTTT+AGG | + | chr8.4:35273657-35273676 | MS.gene47469:intron | 20.0% |
| !!! | GTGGACTATTTAATTAAATA+AGG | + | chr8.4:35273805-35273824 | MS.gene47469:intron | 20.0% |
| !!! | TAATTAAATAAGGGTATTGT+TGG | + | chr8.4:35273815-35273834 | MS.gene47469:intron | 20.0% |
| !!! | TTTTTCCTAAATGATCTAAT+AGG | - | chr8.4:35272090-35272109 | None:intergenic | 20.0% |
| ! | AAAAGACTGAAAATCATGAA+GGG | + | chr8.4:35273229-35273248 | MS.gene47469:CDS | 25.0% |
| ! | AAAAGAGAACCTAAATTTGA+AGG | + | chr8.4:35271166-35271185 | MS.gene47469:CDS | 25.0% |
| ! | AAGTAGAACATTCTACATTA+AGG | + | chr8.4:35271755-35271774 | MS.gene47469:intron | 25.0% |
| ! | ATATAGTTTAGGGACTAAAT+AGG | + | chr8.4:35271937-35271956 | MS.gene47469:intron | 25.0% |
| ! | ATTTGCAAATCATTCTTGTA+AGG | - | chr8.4:35272769-35272788 | None:intergenic | 25.0% |
| ! | GTTTACTCAATACCTTAAAA+GGG | + | chr8.4:35271993-35272012 | MS.gene47469:intron | 25.0% |
| ! | TACCACAAGAAAACTATTAT+TGG | + | chr8.4:35274124-35274143 | MS.gene47469:intron | 25.0% |
| ! | TATACTGAATTTATGATGTG+TGG | + | chr8.4:35273586-35273605 | MS.gene47469:intron | 25.0% |
| ! | TCAACCACTCTAATTAATAT+GGG | - | chr8.4:35273762-35273781 | None:intergenic | 25.0% |
| ! | TCATTATAATTAGTCACACA+TGG | + | chr8.4:35273283-35273302 | MS.gene47469:intron | 25.0% |
| ! | TGAAACTTGTATGTAACTTA+AGG | + | chr8.4:35274025-35274044 | MS.gene47469:intron | 25.0% |
| ! | TGTATATTTAATGGTAGTTG+AGG | + | chr8.4:35272730-35272749 | MS.gene47469:intron | 25.0% |
| ! | TTCAACCACTCTAATTAATA+TGG | - | chr8.4:35273763-35273782 | None:intergenic | 25.0% |
| ! | TTCTTACTGAAATGTATCTT+TGG | + | chr8.4:35272370-35272389 | MS.gene47469:intron | 25.0% |
| ! | TTTGAGAGATTATTACCAAA+TGG | + | chr8.4:35273506-35273525 | MS.gene47469:intron | 25.0% |
| !! | ACATCAAAAAATCCCTTTTA+AGG | - | chr8.4:35272008-35272027 | None:intergenic | 25.0% |
| !! | CTAATTAATATGGGCATTTT+AGG | - | chr8.4:35273753-35273772 | None:intergenic | 25.0% |
| !! | TACCAATAATAGTTTTCTTG+TGG | - | chr8.4:35274129-35274148 | None:intergenic | 25.0% |
| !!! | AAAGTTTAACTTTTTACCTC+AGG | - | chr8.4:35271389-35271408 | None:intergenic | 25.0% |
| !!! | CATGTAGCATATTTGTTTTT+GGG | + | chr8.4:35272801-35272820 | MS.gene47469:intron | 25.0% |
| AACACTTATAATGAGACAGA+TGG | - | chr8.4:35273652-35273671 | None:intergenic | 30.0% | |
| AAGAAACTATACAACATACC+AGG | + | chr8.4:35272224-35272243 | MS.gene47469:CDS | 30.0% | |
| AATATATAAACTGTCCCCAA+AGG | - | chr8.4:35272711-35272730 | None:intergenic | 30.0% | |
| AATGCCCATATTAATTAGAG+TGG | + | chr8.4:35273755-35273774 | MS.gene47469:intron | 30.0% | |
| AGCTAGATAGATGCTATTAT+TGG | + | chr8.4:35274219-35274238 | MS.gene47469:CDS | 30.0% | |
| AGTTAAAGAAATGCCAAAGA+AGG | + | chr8.4:35271660-35271679 | MS.gene47469:CDS | 30.0% | |
| ATATATAAACTGTCCCCAAA+GGG | - | chr8.4:35272710-35272729 | None:intergenic | 30.0% | |
| ATATATCCATGTTTGTACCT+AGG | + | chr8.4:35273051-35273070 | MS.gene47469:intron | 30.0% | |
| ATATATTGACAAGAGCTACT+AGG | + | chr8.4:35271835-35271854 | MS.gene47469:intron | 30.0% | |
| ATCATTCTTGTAAGGAGTTA+TGG | - | chr8.4:35272761-35272780 | None:intergenic | 30.0% | |
| ATCATTTAGGAAAAACTCAC+TGG | + | chr8.4:35272095-35272114 | MS.gene47469:CDS | 30.0% | |
| ATTTCTTTAACTGTAGTAGG+TGG | - | chr8.4:35271652-35271671 | None:intergenic | 30.0% | |
| CAAAAGACTGAAAATCATGA+AGG | + | chr8.4:35273228-35273247 | MS.gene47469:CDS | 30.0% | |
| CCAAAAACAAATATGCTACA+TGG | - | chr8.4:35272803-35272822 | None:intergenic | 30.0% | |
| GAAACTTAACAATACCTAAC+AGG | - | chr8.4:35274093-35274112 | None:intergenic | 30.0% | |
| GATTTAAAAACTTACTCCCA+TGG | - | chr8.4:35272562-35272581 | None:intergenic | 30.0% | |
| GCTAGATAGATGCTATTATT+GGG | + | chr8.4:35274220-35274239 | MS.gene47469:CDS | 30.0% | |
| GGTTTACTCAATACCTTAAA+AGG | + | chr8.4:35271992-35272011 | MS.gene47469:intron | 30.0% | |
| GTCACTTATGAAGATAAAGA+TGG | + | chr8.4:35272511-35272530 | MS.gene47469:CDS | 30.0% | |
| TATATTGACAAGAGCTACTA+GGG | + | chr8.4:35271836-35271855 | MS.gene47469:intron | 30.0% | |
| TCAGGATAGTAATCTACTAT+TGG | - | chr8.4:35273316-35273335 | None:intergenic | 30.0% | |
| TGACACTTATATTGAGATAG+AGG | + | chr8.4:35273918-35273937 | MS.gene47469:intron | 30.0% | |
| TGTAGAATGTTCTACTTACT+TGG | - | chr8.4:35271752-35271771 | None:intergenic | 30.0% | |
| TTCCTAAATGATCTAATAGG+AGG | - | chr8.4:35272087-35272106 | None:intergenic | 30.0% | |
| TTCTTCAATGACTAAAGTGA+TGG | + | chr8.4:35271971-35271990 | MS.gene47469:intron | 30.0% | |
| TTGAAAGAACGCAATTATCT+CGG | + | chr8.4:35271086-35271105 | MS.gene47469:CDS | 30.0% | |
| ! | AGACGGATTTCATATAGTTT+AGG | + | chr8.4:35271866-35271885 | MS.gene47469:intron | 30.0% |
| ! | GACGGATTTCATATAGTTTA+GGG | + | chr8.4:35271867-35271886 | MS.gene47469:intron | 30.0% |
| ! | TAAGTTTATGTTGGTTACAC+AGG | + | chr8.4:35273400-35273419 | MS.gene47469:intron | 30.0% |
| ! | TCTCTTTTTCTCTTCTTTTG+TGG | - | chr8.4:35273970-35273989 | None:intergenic | 30.0% |
| ! | TTAGGTATGTTATGGTCTTA+TGG | + | chr8.4:35272915-35272934 | MS.gene47469:intron | 30.0% |
| !! | CCATGTAGCATATTTGTTTT+TGG | + | chr8.4:35272800-35272819 | MS.gene47469:intron | 30.0% |
| !! | TGTTTTTGACAAAGTGTTCA+AGG | - | chr8.4:35272676-35272695 | None:intergenic | 30.0% |
| !!! | TCAAGTTTTGTTGAGTTCAA+TGG | - | chr8.4:35271254-35271273 | None:intergenic | 30.0% |
| !!! | TTCAAGTAGGAAGGTTTTTT+GGG | - | chr8.4:35272830-35272849 | None:intergenic | 30.0% |
| !!! | TTTCAAGTAGGAAGGTTTTT+TGG | - | chr8.4:35272831-35272850 | None:intergenic | 30.0% |
| AAAAGATCAAGATCCCTTTC+AGG | - | chr8.4:35271230-35271249 | None:intergenic | 35.0% | |
| AACACCAATGAATCATCTCT+TGG | + | chr8.4:35273844-35273863 | MS.gene47469:intron | 35.0% | |
| ACTATTTGTGAAGGTTAGCA+TGG | + | chr8.4:35272170-35272189 | MS.gene47469:CDS | 35.0% | |
| ACTCACAAAACACAACCATT+TGG | - | chr8.4:35273524-35273543 | None:intergenic | 35.0% | |
| ACTGTCAATTTGAAGACTGA+TGG | + | chr8.4:35273112-35273131 | MS.gene47469:intron | 35.0% | |
| AGATCAACCTTCCTAAGATA+AGG | - | chr8.4:35272204-35272223 | None:intergenic | 35.0% | |
| AGTAGTAGTAAAGGAATAGC+TGG | + | chr8.4:35273783-35273802 | MS.gene47469:intron | 35.0% | |
| AGTTGTAAACAGATCACCTA+AGG | - | chr8.4:35272289-35272308 | None:intergenic | 35.0% | |
| ATATAGTTCCAACAATCCCT+AGG | - | chr8.4:35271477-35271496 | None:intergenic | 35.0% | |
| ATGAAGATAAAGATGGTGAC+TGG | + | chr8.4:35272518-35272537 | MS.gene47469:CDS | 35.0% | |
| CATCTTTACTAGGAAGCAAA+GGG | - | chr8.4:35271292-35271311 | None:intergenic | 35.0% | |
| GACAGATGTCAGATAGTTTA+AGG | + | chr8.4:35271898-35271917 | MS.gene47469:intron | 35.0% | |
| GGCATTTCTTTAACTGTAGT+AGG | - | chr8.4:35271655-35271674 | None:intergenic | 35.0% | |
| GGTTACACAGGCATAATATA+TGG | + | chr8.4:35273412-35273431 | MS.gene47469:intron | 35.0% | |
| GTGGTTGAAAGTAGTAGTAA+AGG | + | chr8.4:35273774-35273793 | MS.gene47469:intron | 35.0% | |
| TAAAGAAATGCCAAAGAAGG+TGG | + | chr8.4:35271663-35271682 | MS.gene47469:CDS | 35.0% | |
| TAAGTTAGACCATCGAATCT+GGG | + | chr8.4:35273349-35273368 | MS.gene47469:intron | 35.0% | |
| TACACCAAGAGATGATTCAT+TGG | - | chr8.4:35273851-35273870 | None:intergenic | 35.0% | |
| TAGGGATTGTTGGAACTATA+TGG | + | chr8.4:35271476-35271495 | MS.gene47469:intron | 35.0% | |
| TTAAGTTAGACCATCGAATC+TGG | + | chr8.4:35273348-35273367 | MS.gene47469:intron | 35.0% | |
| TTCAAAGAACAATGACGAAG+TGG | + | chr8.4:35272125-35272144 | MS.gene47469:CDS | 35.0% | |
| TTCTTAACAATATGCGATGC+AGG | + | chr8.4:35271567-35271586 | MS.gene47469:intron | 35.0% | |
| ! | CAGACTTAGGAACTTGATTT+TGG | + | chr8.4:35272962-35272981 | MS.gene47469:intron | 35.0% |
| ! | TTCGTCATTGTTCTTTGAAG+TGG | - | chr8.4:35272124-35272143 | None:intergenic | 35.0% |
| ! | TTTTCTCATCAGACAAGCTT+GGG | - | chr8.4:35271148-35271167 | None:intergenic | 35.0% |
| ! | TTTTTCTCATCAGACAAGCT+TGG | - | chr8.4:35271149-35271168 | None:intergenic | 35.0% |
| !! | ATGTTCAGCTGTTTTACCTT+AGG | + | chr8.4:35272270-35272289 | MS.gene47469:CDS | 35.0% |
| !! | ATTATGATTGAAAGTGCCTC+TGG | + | chr8.4:35274050-35274069 | MS.gene47469:intron | 35.0% |
| !! | TGCAAATGATTTTAGTGCCT+AGG | + | chr8.4:35271444-35271463 | MS.gene47469:intron | 35.0% |
| !!! | TCAAGTAGGAAGGTTTTTTG+GGG | - | chr8.4:35272829-35272848 | None:intergenic | 35.0% |
| !!! | TTACTCGTGTCTTTTCAAGT+AGG | - | chr8.4:35272843-35272862 | None:intergenic | 35.0% |
| AAATTGAAGGACTTCCTGCA+TGG | + | chr8.4:35272475-35272494 | MS.gene47469:CDS | 40.0% | |
| AACAGCTGAACATCTTCTCA+AGG | - | chr8.4:35272263-35272282 | None:intergenic | 40.0% | |
| AAGAACAATGACGAAGTGGA+TGG | + | chr8.4:35272129-35272148 | MS.gene47469:CDS | 40.0% | |
| AATCCCTAGGTTAACATCCT+AGG | - | chr8.4:35271464-35271483 | None:intergenic | 40.0% | |
| ACATCTGCAATGATCCTGTT+AGG | + | chr8.4:35274076-35274095 | MS.gene47469:CDS | 40.0% | |
| ACTCTGTCGCCTTCAAATTT+AGG | - | chr8.4:35271178-35271197 | None:intergenic | 40.0% | |
| ACTGAAATGTATCTTTGGCG+TGG | + | chr8.4:35272375-35272394 | MS.gene47469:intron | 40.0% | |
| AGTAGTAAAGGAATAGCTGG+TGG | + | chr8.4:35273786-35273805 | MS.gene47469:intron | 40.0% | |
| AGTTTGAGAAAAACGGTCCA+AGG | - | chr8.4:35271057-35271076 | None:intergenic | 40.0% | |
| ATTTGAAGGCGACAGAGTTA+AGG | + | chr8.4:35271180-35271199 | MS.gene47469:CDS | 40.0% | |
| ATTTGCAACACTTAACGCCT+AGG | - | chr8.4:35273071-35273090 | None:intergenic | 40.0% | |
| CAGCTGCAGTTTGAGAAAAA+CGG | - | chr8.4:35271064-35271083 | None:intergenic | 40.0% | |
| CCATCTTTACTAGGAAGCAA+AGG | - | chr8.4:35271293-35271312 | None:intergenic | 40.0% | |
| CCTTTGCTTCCTAGTAAAGA+TGG | + | chr8.4:35271290-35271309 | MS.gene47469:CDS | 40.0% | |
| GAGCAGATTCCATCTTTACT+AGG | - | chr8.4:35271302-35271321 | None:intergenic | 40.0% | |
| GATGTTAACCTAGGGATTGT+TGG | + | chr8.4:35271466-35271485 | MS.gene47469:intron | 40.0% | |
| GGATAAAGAAGTCCAAGACT+AGG | - | chr8.4:35273949-35273968 | None:intergenic | 40.0% | |
| GGCCTCCTATTAGATCATTT+AGG | + | chr8.4:35272082-35272101 | MS.gene47469:CDS | 40.0% | |
| GTTGAGTGAGAGCAAATTGA+AGG | + | chr8.4:35272462-35272481 | MS.gene47469:CDS | 40.0% | |
| TACATTCGATGTACCTCATC+AGG | + | chr8.4:35272403-35272422 | MS.gene47469:intron | 40.0% | |
| TCATTGCAGATGTAAACCAG+AGG | - | chr8.4:35274069-35274088 | None:intergenic | 40.0% | |
| TTAACGCCTAGGTACAAACA+TGG | - | chr8.4:35273060-35273079 | None:intergenic | 40.0% | |
| TTTGTGAAGGTTAGCATGGA+TGG | + | chr8.4:35272174-35272193 | MS.gene47469:CDS | 40.0% | |
| ! | ATGAAGGGTTCTGATGCAAT+TGG | + | chr8.4:35273244-35273263 | MS.gene47469:CDS | 40.0% |
| ! | GTTGTTTCAGGCAACAAAAG+AGG | + | chr8.4:35271338-35271357 | MS.gene47469:CDS | 40.0% |
| ! | GTTTTTCTCAAACTGCAGCT+GGG | + | chr8.4:35271063-35271082 | MS.gene47469:CDS | 40.0% |
| ! | TAGATGAAGAGTGCAGACTT+AGG | + | chr8.4:35272949-35272968 | MS.gene47469:intron | 40.0% |
| !! | ATAGAGGAAGTACCTAGTCT+TGG | + | chr8.4:35273934-35273953 | MS.gene47469:intron | 40.0% |
| !! | CAGTTCCATTTGCTGTACAA+GGG | - | chr8.4:35271699-35271718 | None:intergenic | 40.0% |
| !! | GTCATTGTTCTTTGAAGTGG+TGG | - | chr8.4:35272121-35272140 | None:intergenic | 40.0% |
| !!! | CAAGTAGGAAGGTTTTTTGG+GGG | - | chr8.4:35272828-35272847 | None:intergenic | 40.0% |
| !!! | TCGTGTCTTTTCAAGTAGGA+AGG | - | chr8.4:35272839-35272858 | None:intergenic | 40.0% |
| AACATGCTTGTGCAACCCTT+TGG | + | chr8.4:35272692-35272711 | MS.gene47469:intron | 45.0% | |
| ACAGAGCACAAGTTGTTGGT+TGG | + | chr8.4:35272061-35272080 | MS.gene47469:intron | 45.0% | |
| ACATATCGACCCAGATTCGA+TGG | - | chr8.4:35273361-35273380 | None:intergenic | 45.0% | |
| ACATGCTTGTGCAACCCTTT+GGG | + | chr8.4:35272693-35272712 | MS.gene47469:intron | 45.0% | |
| AGGAAACACTTCCAGTGTGT+CGG | - | chr8.4:35271369-35271388 | None:intergenic | 45.0% | |
| AGTGCCTAGGATGTTAACCT+AGG | + | chr8.4:35271457-35271476 | MS.gene47469:intron | 45.0% | |
| ATCTGCATCTCCACAATCCT+TGG | + | chr8.4:35271037-35271056 | MS.gene47469:CDS | 45.0% | |
| CCACATATTCAGAACCATGC+AGG | - | chr8.4:35272492-35272511 | None:intergenic | 45.0% | |
| CCATGGAAAAATCCAAGAGC+AGG | + | chr8.4:35274196-35274215 | MS.gene47469:CDS | 45.0% | |
| CCTTGTACAGCAAATGGAAC+TGG | + | chr8.4:35271697-35271716 | MS.gene47469:CDS | 45.0% | |
| CGGTTTGTCTGATTGCTCAT+CGG | + | chr8.4:35271106-35271125 | MS.gene47469:CDS | 45.0% | |
| CTCTCTTGTACCACCTTCTT+TGG | - | chr8.4:35271676-35271695 | None:intergenic | 45.0% | |
| GAAAAACGGTCCAAGGATTG+TGG | - | chr8.4:35271050-35271069 | None:intergenic | 45.0% | |
| GCCTGAAACAACAGTCTTCT+GGG | - | chr8.4:35271330-35271349 | None:intergenic | 45.0% | |
| GCGATGCAGGCAAAATATAC+TGG | + | chr8.4:35271580-35271599 | MS.gene47469:intron | 45.0% | |
| GCTACTAGGGAGTAAAGAGA+CGG | + | chr8.4:35271849-35271868 | MS.gene47469:intron | 45.0% | |
| GCTTGTAGGAGATGTACCAT+GGG | + | chr8.4:35272543-35272562 | MS.gene47469:CDS | 45.0% | |
| GTGCCTAGGATGTTAACCTA+GGG | + | chr8.4:35271458-35271477 | MS.gene47469:intron | 45.0% | |
| TACGACAGAGCACAAGTTGT+TGG | + | chr8.4:35272057-35272076 | MS.gene47469:intron | 45.0% | |
| TCACTCAACATTTCTCTCCC+TGG | - | chr8.4:35272451-35272470 | None:intergenic | 45.0% | |
| TCTTCTCTTTGCAGCTCCAA+GGG | + | chr8.4:35274173-35274192 | MS.gene47469:intron | 45.0% | |
| TGCAGCTGCACTATTTGTGA+AGG | + | chr8.4:35272161-35272180 | MS.gene47469:CDS | 45.0% | |
| TGCCTGAAACAACAGTCTTC+TGG | - | chr8.4:35271331-35271350 | None:intergenic | 45.0% | |
| TGCTTGTAGGAGATGTACCA+TGG | + | chr8.4:35272542-35272561 | MS.gene47469:CDS | 45.0% | |
| TGTACCTCATCAGGTCAATG+TGG | + | chr8.4:35272412-35272431 | MS.gene47469:intron | 45.0% | |
| TGTTCTACTTACTTGGCAGC+TGG | - | chr8.4:35271745-35271764 | None:intergenic | 45.0% | |
| TTCTTCTCTTTGCAGCTCCA+AGG | + | chr8.4:35274172-35274191 | MS.gene47469:intron | 45.0% | |
| ! | ATCTATCTAGCTCCTGCTCT+TGG | - | chr8.4:35274211-35274230 | None:intergenic | 45.0% |
| ! | CCTGCTCTTGGATTTTTCCA+TGG | - | chr8.4:35274199-35274218 | None:intergenic | 45.0% |
| ! | CGTTTTTCTCAAACTGCAGC+TGG | + | chr8.4:35271062-35271081 | MS.gene47469:CDS | 45.0% |
| ! | TTGGATTTTTCCATGGCCCT+TGG | - | chr8.4:35274192-35274211 | None:intergenic | 45.0% |
| !! | CCAGTTCCATTTGCTGTACA+AGG | - | chr8.4:35271700-35271719 | None:intergenic | 45.0% |
| !! | CCTGCATGGTTCTGAATATG+TGG | + | chr8.4:35272489-35272508 | MS.gene47469:CDS | 45.0% |
| !! | TCCCAGAAGACTGTTGTTTC+AGG | + | chr8.4:35271326-35271345 | MS.gene47469:CDS | 45.0% |
| !! | TTTATATATTGTATATTTAA+TGG | + | chr8.4:35272721-35272740 | MS.gene47469:intron | 5.0% |
| AAGGCGACAGAGTTAAGGCT+CGG | + | chr8.4:35271185-35271204 | MS.gene47469:CDS | 50.0% | |
| ACAAATAGTGCAGCTGCACC+AGG | - | chr8.4:35272159-35272178 | None:intergenic | 50.0% | |
| AGATGCAGATGCTACCGTTG+AGG | - | chr8.4:35271027-35271046 | None:intergenic | 50.0% | |
| ATGCAGATGCTACCGTTGAG+GGG | - | chr8.4:35271025-35271044 | None:intergenic | 50.0% | |
| CATGCTTGTGCAACCCTTTG+GGG | + | chr8.4:35272694-35272713 | MS.gene47469:intron | 50.0% | |
| CGAACCACATTGACCTGATG+AGG | - | chr8.4:35272419-35272438 | None:intergenic | 50.0% | |
| CTAGGAAGCAAAGGGAAGAG+CGG | - | chr8.4:35271284-35271303 | None:intergenic | 50.0% | |
| GACGAAGTGGATGGAAAACC+TGG | + | chr8.4:35272138-35272157 | MS.gene47469:CDS | 50.0% | |
| GAGAGCCCTTGTACAGCAAA+TGG | + | chr8.4:35271691-35271710 | MS.gene47469:CDS | 50.0% | |
| GATGCAGATGCTACCGTTGA+GGG | - | chr8.4:35271026-35271045 | None:intergenic | 50.0% | |
| GATGGTGACTGGATGCTTGT+AGG | + | chr8.4:35272529-35272548 | MS.gene47469:CDS | 50.0% | |
| TCAGGTCAATGTGGTTCGCA+TGG | + | chr8.4:35272421-35272440 | MS.gene47469:intron | 50.0% | |
| TGGATCTCAGTCGCCTGAAA+GGG | + | chr8.4:35271214-35271233 | MS.gene47469:CDS | 50.0% | |
| TGGATGGCGCTCCTTATCTT+AGG | + | chr8.4:35272190-35272209 | MS.gene47469:CDS | 50.0% | |
| TGGCGCTCCTTATCTTAGGA+AGG | + | chr8.4:35272194-35272213 | MS.gene47469:CDS | 50.0% | |
| ! | AAGAGGTTTTGCCGACACAC+TGG | + | chr8.4:35271355-35271374 | MS.gene47469:CDS | 50.0% |
| ! | GGTTCTGATGCAATTGGCCT+AGG | + | chr8.4:35273250-35273269 | MS.gene47469:CDS | 50.0% |
| ! | TGCTGCTTCCTGAAGAGGAA+GGG | + | chr8.4:35270991-35271010 | MS.gene47469:CDS | 50.0% |
| !! | CACACTGGAAGTGTTTCCTG+AGG | + | chr8.4:35271370-35271389 | MS.gene47469:CDS | 50.0% |
| CAAGGTCAGACGACAGTTCC+TGG | - | chr8.4:35272245-35272264 | None:intergenic | 55.0% | |
| CTGCTTTCGCCAAGACCTTC+TGG | + | chr8.4:35271622-35271641 | MS.gene47469:CDS | 55.0% | |
| CTGGATCTCAGTCGCCTGAA+AGG | + | chr8.4:35271213-35271232 | MS.gene47469:CDS | 55.0% | |
| CTTTCAGGCGACTGAGATCC+AGG | - | chr8.4:35271215-35271234 | None:intergenic | 55.0% | |
| GAGTTAAGGCTCGGACTTCC+TGG | + | chr8.4:35271194-35271213 | MS.gene47469:CDS | 55.0% | |
| GTAGTAGGTGGAGCTCCAGA+AGG | - | chr8.4:35271640-35271659 | None:intergenic | 55.0% | |
| TCCTCTTCAGGAAGCAGCAG+TGG | - | chr8.4:35270990-35271009 | None:intergenic | 55.0% | |
| TCTTCAGGAAGCAGCAGTGG+CGG | - | chr8.4:35270987-35271006 | None:intergenic | 55.0% | |
| TTGCTCTGCCCTTCCTCTTC+AGG | - | chr8.4:35271002-35271021 | None:intergenic | 55.0% | |
| ! | CTGCTGCTTCCTGAAGAGGA+AGG | + | chr8.4:35270990-35271009 | MS.gene47469:CDS | 55.0% |
| AGCTGGTGCACTGCCACTGA+TGG | - | chr8.4:35271728-35271747 | None:intergenic | 60.0% | |
| AGGGCAGAGCAACCCCTCAA+CGG | + | chr8.4:35271010-35271029 | MS.gene47469:CDS | 60.0% | |
| CTTTGCAGCTCCAAGGGCCA+TGG | + | chr8.4:35274179-35274198 | MS.gene47469:intron | 60.0% | |
| GCTGGTGCACTGCCACTGAT+GGG | - | chr8.4:35271727-35271746 | None:intergenic | 60.0% | |
| GGAACTGGAGCTCCCATCAG+TGG | + | chr8.4:35271712-35271731 | MS.gene47469:CDS | 60.0% | |
| GGTGGAGCTCCAGAAGGTCT+TGG | - | chr8.4:35271634-35271653 | None:intergenic | 60.0% | |
| GTGGTTCGCATGGAGCTCCA+GGG | + | chr8.4:35272431-35272450 | MS.gene47469:CDS | 60.0% | |
| TGTGGTTCGCATGGAGCTCC+AGG | + | chr8.4:35272430-35272449 | MS.gene47469:CDS | 60.0% | |
| ! | GCCACTGCTGCTTCCTGAAG+AGG | + | chr8.4:35270986-35271005 | MS.gene47469:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 35270978 | 35274250 | 35270978 | ID=MS.gene47469 |
| chr8.4 | mRNA | 35270978 | 35274250 | 35270978 | ID=MS.gene47469.t1;Parent=MS.gene47469 |
| chr8.4 | exon | 35270978 | 35271391 | 35270978 | ID=MS.gene47469.t1.exon1;Parent=MS.gene47469.t1 |
| chr8.4 | CDS | 35270978 | 35271391 | 35270978 | ID=cds.MS.gene47469.t1;Parent=MS.gene47469.t1 |
| chr8.4 | exon | 35271589 | 35271752 | 35271589 | ID=MS.gene47469.t1.exon2;Parent=MS.gene47469.t1 |
| chr8.4 | CDS | 35271589 | 35271752 | 35271589 | ID=cds.MS.gene47469.t1;Parent=MS.gene47469.t1 |
| chr8.4 | exon | 35272065 | 35272291 | 35272065 | ID=MS.gene47469.t1.exon3;Parent=MS.gene47469.t1 |
| chr8.4 | CDS | 35272065 | 35272291 | 35272065 | ID=cds.MS.gene47469.t1;Parent=MS.gene47469.t1 |
| chr8.4 | exon | 35272425 | 35272566 | 35272425 | ID=MS.gene47469.t1.exon4;Parent=MS.gene47469.t1 |
| chr8.4 | CDS | 35272425 | 35272566 | 35272425 | ID=cds.MS.gene47469.t1;Parent=MS.gene47469.t1 |
| chr8.4 | exon | 35273210 | 35273271 | 35273210 | ID=MS.gene47469.t1.exon5;Parent=MS.gene47469.t1 |
| chr8.4 | CDS | 35273210 | 35273271 | 35273210 | ID=cds.MS.gene47469.t1;Parent=MS.gene47469.t1 |
| chr8.4 | exon | 35274064 | 35274097 | 35274064 | ID=MS.gene47469.t1.exon6;Parent=MS.gene47469.t1 |
| chr8.4 | CDS | 35274064 | 35274097 | 35274064 | ID=cds.MS.gene47469.t1;Parent=MS.gene47469.t1 |
| chr8.4 | exon | 35274187 | 35274250 | 35274187 | ID=MS.gene47469.t1.exon7;Parent=MS.gene47469.t1 |
| chr8.4 | CDS | 35274187 | 35274250 | 35274187 | ID=cds.MS.gene47469.t1;Parent=MS.gene47469.t1 |
| Gene Sequence |
| Protein sequence |
