Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06171.t1 | PNX73058.1 | 85.3 | 456 | 67 | 0 | 1 | 456 | 1 | 456 | 5.60E-220 | 773.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06171.t1 | Q9M0E1 | 46.0 | 457 | 231 | 6 | 1 | 452 | 1 | 446 | 1.3e-105 | 384.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06171.t1 | A0A2K3L3E2 | 85.3 | 456 | 67 | 0 | 1 | 456 | 1 | 456 | 4.0e-220 | 773.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050558 | MS.gene06171 | -0.80703 | 6.17E-50 | -1.69E-46 |
| MS.gene050787 | MS.gene06171 | -0.806513 | 7.93E-50 | -1.69E-46 |
| MS.gene052207 | MS.gene06171 | -0.838976 | 2.09E-57 | -1.69E-46 |
| MS.gene052287 | MS.gene06171 | -0.825621 | 4.24E-54 | -1.69E-46 |
| MS.gene053836 | MS.gene06171 | -0.803544 | 3.31E-49 | -1.69E-46 |
| MS.gene054473 | MS.gene06171 | -0.814348 | 1.61E-51 | -1.69E-46 |
| MS.gene055277 | MS.gene06171 | -0.816181 | 6.31E-52 | -1.69E-46 |
| MS.gene055303 | MS.gene06171 | -0.847681 | 9.91E-60 | -1.69E-46 |
| MS.gene055428 | MS.gene06171 | -0.805928 | 1.05E-49 | -1.69E-46 |
| MS.gene056069 | MS.gene06171 | 0.815867 | 7.42E-52 | -1.69E-46 |
| MS.gene056931 | MS.gene06171 | -0.804624 | 1.98E-49 | -1.69E-46 |
| MS.gene056935 | MS.gene06171 | -0.801099 | 1.06E-48 | -1.69E-46 |
| MS.gene059033 | MS.gene06171 | 0.804158 | 2.47E-49 | -1.69E-46 |
| MS.gene060559 | MS.gene06171 | -0.822103 | 2.83E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06171.t1 | MTR_8g101930 | 85.086 | 409 | 34 | 1 | 48 | 456 | 1 | 382 | 0.0 | 664 |
| MS.gene06171.t1 | MTR_4g068400 | 68.750 | 48 | 14 | 1 | 277 | 324 | 14 | 60 | 1.24e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06171.t1 | AT4G29420 | 45.952 | 457 | 231 | 6 | 1 | 452 | 1 | 446 | 6.67e-134 | 393 |
Find 112 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTCTCTGTTTCTGATTTC+TGG | -0.102421 | 4.2:-3281752 | MS.gene06171:CDS |
| CTTAAGGAACTTAATCTTAT+TGG | 0.148001 | 4.2:-3280659 | MS.gene06171:CDS |
| CGCAGGTTAAGTTTGGAAAA+TGG | 0.222783 | 4.2:-3280170 | MS.gene06171:CDS |
| TTCAAATGCTCCTCTTTCTT+TGG | 0.250922 | 4.2:-3280573 | MS.gene06171:CDS |
| TTAGATGGAGATGGGGAATA+TGG | 0.260868 | 4.2:-3279953 | MS.gene06171:CDS |
| TTCTTTCCGCAGGTTAAGTT+TGG | 0.307176 | 4.2:-3280177 | MS.gene06171:CDS |
| ATTTCTGGGTTCAATCTTGT+TGG | 0.315218 | 4.2:-3281737 | MS.gene06171:CDS |
| GCTCTCTGTTTCTGATTTCT+GGG | 0.347427 | 4.2:-3281751 | MS.gene06171:CDS |
| AACATAAGGTATCTAAGTTT+AGG | 0.356561 | 4.2:-3280227 | MS.gene06171:CDS |
| AGGCTATGGTTTGGTGCAAT+TGG | 0.363155 | 4.2:-3280807 | MS.gene06171:CDS |
| AGATTAAGTTCCTTAAGGTT+AGG | 0.364458 | 4.2:+3280665 | None:intergenic |
| ACAGAGAGAGTTGTAGAGGT+TGG | 0.367243 | 4.2:-3280302 | MS.gene06171:CDS |
| TACAAACTCAAGAGTCAAAT+TGG | 0.367246 | 4.2:+3280730 | None:intergenic |
| TACTTGTTTCCCTAACCTTA+AGG | 0.368816 | 4.2:-3280675 | MS.gene06171:CDS |
| CAATAAGATTAAGTTCCTTA+AGG | 0.377361 | 4.2:+3280660 | None:intergenic |
| AGAGAGCGACTTAATCGAAT+TGG | 0.381163 | 4.2:+3281767 | None:intergenic |
| AAACTTAGATACCTTATGTT+GGG | 0.381371 | 4.2:+3280230 | None:intergenic |
| GTTTGGTGCAATTGGAGGTT+AGG | 0.383923 | 4.2:-3280799 | MS.gene06171:CDS |
| ATTTCAATTTCATTCAAGAT+TGG | 0.385697 | 4.2:-3281803 | MS.gene06171:CDS |
| GACTCTTGAGTTTGTAAGAT+TGG | 0.385958 | 4.2:-3280723 | MS.gene06171:CDS |
| GTTGATCAAGTAGGAGAGTT+TGG | 0.393214 | 4.2:-3280278 | MS.gene06171:CDS |
| GTGATGAGGTGCTTGGTATC+TGG | 0.398273 | 4.2:+3281963 | None:intergenic |
| GATTAAGTTCCTTAAGGTTA+GGG | 0.398337 | 4.2:+3280666 | None:intergenic |
| GATGCTGATCCTTGTGCTGC+TGG | 0.400589 | 4.2:-3280014 | MS.gene06171:CDS |
| ATGGTGACGGATTCAAGATT+GGG | 0.404295 | 4.2:+3281900 | None:intergenic |
| AGAAGGAATCAAGGATACTT+TGG | 0.419448 | 4.2:-3279928 | MS.gene06171:CDS |
| GCAAATTCCCTGGAGTTAGA+TGG | 0.420453 | 4.2:-3279968 | MS.gene06171:CDS |
| GCAGGTTAAGTTTGGAAAAT+GGG | 0.422254 | 4.2:-3280169 | MS.gene06171:CDS |
| TGAATTATTTCCCCAACATA+AGG | 0.424575 | 4.2:-3280241 | MS.gene06171:CDS |
| AGGTGTGAGAGATTAATCTT+AGG | 0.425607 | 4.2:+3280617 | None:intergenic |
| GTATCTAAGTTTAGGTTATG+AGG | 0.429251 | 4.2:-3280219 | MS.gene06171:CDS |
| CCGACCATTGACAAGTTTGA+AGG | 0.432550 | 4.2:+3280597 | None:intergenic |
| GATGGTGACGGATTCAAGAT+TGG | 0.439228 | 4.2:+3281899 | None:intergenic |
| TTTGGATAAATGCACCCTCC+TGG | 0.440415 | 4.2:-3280063 | MS.gene06171:CDS |
| TAAGTTTAGGTTATGAGGCT+TGG | 0.443271 | 4.2:-3280214 | MS.gene06171:CDS |
| GAACTTAATCTTATTGGTGT+TGG | 0.446999 | 4.2:-3280653 | MS.gene06171:CDS |
| CCCCATCTCCATCTAACTCC+AGG | 0.448635 | 4.2:+3279960 | None:intergenic |
| CTTAATCTTATTGGTGTTGG+AGG | 0.450290 | 4.2:-3280650 | MS.gene06171:CDS |
| CAAGAGTAAACTCAATTTCA+AGG | 0.453685 | 4.2:+3280102 | None:intergenic |
| ATCTGATGATCTTCACCTTA+CGG | 0.465937 | 4.2:-3281826 | MS.gene06171:CDS |
| TTGACAAAGAAGGTGCTTCA+AGG | 0.471175 | 4.2:+3280489 | None:intergenic |
| GAGGTTGGAGTTGATCAAGT+AGG | 0.483396 | 4.2:-3280287 | MS.gene06171:CDS |
| TTGTGCTACAGGCTATGGTT+TGG | 0.489604 | 4.2:-3280816 | MS.gene06171:intron |
| CCCTGGAGTTAGATGGAGAT+GGG | 0.491028 | 4.2:-3279961 | MS.gene06171:CDS |
| CTATGGTTTGGTGCAATTGG+AGG | 0.491781 | 4.2:-3280804 | MS.gene06171:CDS |
| TTCGGAGGAAGCGGAGTTGA+GGG | 0.493295 | 4.2:+3282040 | None:intergenic |
| AAGAACAGAGAGAGTTGTAG+AGG | 0.501443 | 4.2:-3280306 | MS.gene06171:CDS |
| GAGAAGGAGGTTCTTGAAAA+CGG | 0.503343 | 4.2:+3281929 | None:intergenic |
| CGCATTCCGCTTCAAGCTGA+AGG | 0.511737 | 4.2:+3280402 | None:intergenic |
| AAGGATACTTTGGTTTCAGA+TGG | 0.512935 | 4.2:-3279918 | MS.gene06171:CDS |
| TAAACTTAGATACCTTATGT+TGG | 0.515466 | 4.2:+3280229 | None:intergenic |
| CTTCGGAGGAAGCGGAGTTG+AGG | 0.516753 | 4.2:+3282039 | None:intergenic |
| TTGGATAAATGCACCCTCCT+GGG | 0.518672 | 4.2:-3280062 | MS.gene06171:CDS |
| AACGCTTGGTTAGCTGTGGA+TGG | 0.519585 | 4.2:-3280776 | MS.gene06171:CDS |
| CGAACGAACTTCGGAGGAAG+CGG | 0.523808 | 4.2:+3282031 | None:intergenic |
| AATATGGAAAGAAGGAATCA+AGG | 0.525029 | 4.2:-3279937 | MS.gene06171:CDS |
| CACACCTTCAAACTTGTCAA+TGG | 0.525428 | 4.2:-3280601 | MS.gene06171:CDS |
| ATTTCTACAACCAGCGGAGA+GGG | 0.527269 | 4.2:+3282119 | None:intergenic |
| TTCATCTTCAAAGTCGTCAA+AGG | 0.528968 | 4.2:+3281848 | None:intergenic |
| AGATGGAAATCAACAAGACT+TGG | 0.529529 | 4.2:+3280539 | None:intergenic |
| TTAAGTTTGGAAAATGGGAC+TGG | 0.529733 | 4.2:-3280164 | MS.gene06171:CDS |
| GAGGGTCAACGAACGAACTT+CGG | 0.530729 | 4.2:+3282022 | None:intergenic |
| ACGATCAACGCCGATGGTGA+CGG | 0.532340 | 4.2:+3281887 | None:intergenic |
| CCTTCAAACTTGTCAATGGT+CGG | 0.533893 | 4.2:-3280597 | MS.gene06171:CDS |
| TGATTTGAGGTAACGAGAGA+TGG | 0.534176 | 4.2:+3281992 | None:intergenic |
| CTAACAAGTGGAAGAGATGA+GGG | 0.540516 | 4.2:+3281695 | None:intergenic |
| GAGTCTGCATCTTGCTAGAT+CGG | 0.541109 | 4.2:+3282073 | None:intergenic |
| TTATGAGGCTTGGCTTGTGA+TGG | 0.541430 | 4.2:-3280204 | MS.gene06171:CDS |
| GGAGAATCTACCCTCTCCGC+TGG | 0.541471 | 4.2:-3282129 | MS.gene06171:CDS |
| AGATGGGGAATATGGAAAGA+AGG | 0.543662 | 4.2:-3279945 | MS.gene06171:CDS |
| GTGTGCAGAAGCAAATTCCC+TGG | 0.546248 | 4.2:-3279978 | MS.gene06171:CDS |
| GCAGATATAACCAAAGAAAG+AGG | 0.547218 | 4.2:+3280563 | None:intergenic |
| TCATCTTCAAAGTCGTCAAA+GGG | 0.547953 | 4.2:+3281849 | None:intergenic |
| GAAAGGGGTGATGAGGTGCT+TGG | 0.550156 | 4.2:+3281956 | None:intergenic |
| TGATGGAGAGTTCTTTCCGC+AGG | 0.554985 | 4.2:-3280187 | MS.gene06171:CDS |
| TCCCTGGAGTTAGATGGAGA+TGG | 0.559224 | 4.2:-3279962 | MS.gene06171:CDS |
| AATTGGAGGTTAGGAACGCT+TGG | 0.559456 | 4.2:-3280790 | MS.gene06171:CDS |
| GACGTTTCTCTGTTCATCCA+CGG | 0.559987 | 4.2:-3280038 | MS.gene06171:CDS |
| TAGGCTTGACACACTTGAGA+TGG | 0.566419 | 4.2:+3280522 | None:intergenic |
| TGAACAGAGAAACGTCTCCC+AGG | 0.569762 | 4.2:+3280045 | None:intergenic |
| ATCTCAAGTGTGTCAAGCCT+AGG | 0.572917 | 4.2:-3280520 | MS.gene06171:CDS |
| TAGGAACGCTTGGTTAGCTG+TGG | 0.580545 | 4.2:-3280780 | MS.gene06171:CDS |
| TATCTGGTGAACGTGATTTG+AGG | 0.581565 | 4.2:+3281979 | None:intergenic |
| ACGAGAGATGGAACAGATGA+GGG | 0.582688 | 4.2:+3282004 | None:intergenic |
| TAAGTTTGGAAAATGGGACT+GGG | 0.583779 | 4.2:-3280163 | MS.gene06171:CDS |
| AATCTTGAATCCGTCACCAT+CGG | 0.590717 | 4.2:-3281897 | MS.gene06171:CDS |
| GAATGAAATTGAAATCCGTA+AGG | 0.594296 | 4.2:+3281811 | None:intergenic |
| AACGAGAGATGGAACAGATG+AGG | 0.597347 | 4.2:+3282003 | None:intergenic |
| CCCATCTCCATCTAACTCCA+GGG | 0.598276 | 4.2:+3279961 | None:intergenic |
| AACTTAGATACCTTATGTTG+GGG | 0.600732 | 4.2:+3280231 | None:intergenic |
| AGACTGAAGTTTGACAAAGA+AGG | 0.601585 | 4.2:+3280479 | None:intergenic |
| ACTAACAAGTGGAAGAGATG+AGG | 0.602954 | 4.2:+3281694 | None:intergenic |
| GCTTCAAGGAAAAGCAACCT+AGG | 0.609348 | 4.2:+3280503 | None:intergenic |
| TGGTGACGGATTCAAGATTG+GGG | 0.614137 | 4.2:+3281901 | None:intergenic |
| ATGAGATTTCCAGCAGCACA+AGG | 0.623043 | 4.2:+3280005 | None:intergenic |
| CTAGATCGGTTGAGTCGTTG+AGG | 0.623467 | 4.2:+3282087 | None:intergenic |
| CAGAGAAACGTCTCCCAGGA+GGG | 0.629157 | 4.2:+3280049 | None:intergenic |
| CTTAGAATTTCTACAACCAG+CGG | 0.636022 | 4.2:+3282113 | None:intergenic |
| AGAGCTTGTTGCACATATCG+TGG | 0.636306 | 4.2:-3280126 | MS.gene06171:CDS |
| GTTTGTAAGATTGGATGATG+AGG | 0.640974 | 4.2:-3280714 | MS.gene06171:CDS |
| AAGAGAACGATCAACGCCGA+TGG | 0.643423 | 4.2:+3281881 | None:intergenic |
| ACAATGCCTTCAGCTTGAAG+CGG | 0.645681 | 4.2:-3280408 | MS.gene06171:CDS |
| GATCGGTTGAGTCGTTGAGG+CGG | 0.655845 | 4.2:+3282090 | None:intergenic |
| GGTCAACGAACGAACTTCGG+AGG | 0.658236 | 4.2:+3282025 | None:intergenic |
| CCTGGAGTTAGATGGAGATG+GGG | 0.661275 | 4.2:-3279960 | MS.gene06171:CDS |
| TTAATCGAATTGGAAAGCGA+AGG | 0.664500 | 4.2:+3281777 | None:intergenic |
| AATTTCTACAACCAGCGGAG+AGG | 0.665838 | 4.2:+3282118 | None:intergenic |
| GGTGACGGATTCAAGATTGG+GGG | 0.683900 | 4.2:+3281902 | None:intergenic |
| ACAGAGAAACGTCTCCCAGG+AGG | 0.695142 | 4.2:+3280048 | None:intergenic |
| CACAAGGATCAGCATCACCG+TGG | 0.702098 | 4.2:+3280021 | None:intergenic |
| TAACAAGTGGAAGAGATGAG+GGG | 0.706106 | 4.2:+3281696 | None:intergenic |
| GTCTCTCTACAACAACACAA+TGG | 0.730203 | 4.2:+3280348 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATATTTTTAAAGATATTTT+AGG | - | chr4.2:3280698-3280717 | MS.gene06171:CDS | 10.0% |
| !! | TATTGTAGATGATTAAAAAT+AGG | + | chr4.2:3280896-3280915 | None:intergenic | 15.0% |
| !!! | TATCTTTAAAAATATCTACT+TGG | + | chr4.2:3280694-3280713 | None:intergenic | 15.0% |
| !! | AATCATCTACAATAGTTATA+GGG | - | chr4.2:3280902-3280921 | MS.gene06171:intron | 20.0% |
| !! | AATGGACAATAAATAATCAA+AGG | + | chr4.2:3280394-3280413 | None:intergenic | 20.0% |
| !! | ATTTCAATTTCATTCAAGAT+TGG | - | chr4.2:3280239-3280258 | MS.gene06171:CDS | 20.0% |
| !! | CATCAATCTATTATAACTAT+GGG | + | chr4.2:3281097-3281116 | None:intergenic | 20.0% |
| !! | GTATAAACTCAATTCTAAAT+TGG | + | chr4.2:3280516-3280535 | None:intergenic | 20.0% |
| !! | TAATCATCTACAATAGTTAT+AGG | - | chr4.2:3280901-3280920 | MS.gene06171:intron | 20.0% |
| ! | AAAATGTGATATGATAGAGT+CGG | - | chr4.2:3280731-3280750 | MS.gene06171:CDS | 25.0% |
| ! | AAACTTAGATACCTTATGTT+GGG | + | chr4.2:3281815-3281834 | None:intergenic | 25.0% |
| ! | CAATAAGATTAAGTTCCTTA+AGG | + | chr4.2:3281385-3281404 | None:intergenic | 25.0% |
| ! | CAGCTATAATAGATAATTGA+CGG | - | chr4.2:3280830-3280849 | MS.gene06171:intron | 25.0% |
| ! | CTTAAGGAACTTAATCTTAT+TGG | - | chr4.2:3281383-3281402 | MS.gene06171:intron | 25.0% |
| ! | GATATGAAACTATTAGCAAA+AGG | + | chr4.2:3281204-3281223 | None:intergenic | 25.0% |
| ! | GCATCAATCTATTATAACTA+TGG | + | chr4.2:3281098-3281117 | None:intergenic | 25.0% |
| ! | GTAAAAAGACTTTACATTGA+TGG | - | chr4.2:3281119-3281138 | MS.gene06171:intron | 25.0% |
| ! | TAAACTTAGATACCTTATGT+TGG | + | chr4.2:3281816-3281835 | None:intergenic | 25.0% |
| !! | AACATAAGGTATCTAAGTTT+AGG | - | chr4.2:3281815-3281834 | MS.gene06171:CDS | 25.0% |
| !! | CTCTATCATATCACATTTTT+AGG | + | chr4.2:3280730-3280749 | None:intergenic | 25.0% |
| !!! | ATCCTTTAGAGTTATATTTG+TGG | - | chr4.2:3281156-3281175 | MS.gene06171:intron | 25.0% |
| !!! | TGCATTTATTTTCTCTGTTT+TGG | - | chr4.2:3281961-3281980 | MS.gene06171:CDS | 25.0% |
| AACTTAGATACCTTATGTTG+GGG | + | chr4.2:3281814-3281833 | None:intergenic | 30.0% | |
| AATATGGAAAGAAGGAATCA+AGG | - | chr4.2:3282105-3282124 | MS.gene06171:CDS | 30.0% | |
| AGATAATTGACGGTGTAAAA+AGG | - | chr4.2:3280840-3280859 | MS.gene06171:intron | 30.0% | |
| AGATTAAGTTCCTTAAGGTT+AGG | + | chr4.2:3281380-3281399 | None:intergenic | 30.0% | |
| CAAGAGTAAACTCAATTTCA+AGG | + | chr4.2:3281943-3281962 | None:intergenic | 30.0% | |
| GAACTTAATCTTATTGGTGT+TGG | - | chr4.2:3281389-3281408 | MS.gene06171:intron | 30.0% | |
| GAATGAAATTGAAATCCGTA+AGG | + | chr4.2:3280234-3280253 | None:intergenic | 30.0% | |
| GATTAAGTTCCTTAAGGTTA+GGG | + | chr4.2:3281379-3281398 | None:intergenic | 30.0% | |
| GTTTGTGTAATAAAGTGCAT+TGG | + | chr4.2:3281012-3281031 | None:intergenic | 30.0% | |
| TACAAACTCAAGAGTCAAAT+TGG | + | chr4.2:3281315-3281334 | None:intergenic | 30.0% | |
| TAGCATAATTGCAACTACAA+TGG | + | chr4.2:3280412-3280431 | None:intergenic | 30.0% | |
| TGAATTATTTCCCCAACATA+AGG | - | chr4.2:3281801-3281820 | MS.gene06171:CDS | 30.0% | |
| TTGGCATGATTAGATTTGAT+AGG | + | chr4.2:3280675-3280694 | None:intergenic | 30.0% | |
| ! | ATTTCTAATTTTCTATGCCG+TGG | - | chr4.2:3280626-3280645 | MS.gene06171:CDS | 30.0% |
| ! | CAACAGTGTAAAACCTTTTT+AGG | + | chr4.2:3280774-3280793 | None:intergenic | 30.0% |
| ! | CTAAAAAGGTTTTACACTGT+TGG | - | chr4.2:3280772-3280791 | MS.gene06171:CDS | 30.0% |
| ! | GCTGCTAGATGATTTAAAAT+AGG | + | chr4.2:3280814-3280833 | None:intergenic | 30.0% |
| ! | GTATCTAAGTTTAGGTTATG+AGG | - | chr4.2:3281823-3281842 | MS.gene06171:CDS | 30.0% |
| !! | TGTAAAGTTTTATACCTCCA+CGG | + | chr4.2:3280646-3280665 | None:intergenic | 30.0% |
| !!! | TCTTGAAAACGGTTTTGAAA+GGG | + | chr4.2:3280105-3280124 | None:intergenic | 30.0% |
| !!! | TTCTTGAAAACGGTTTTGAA+AGG | + | chr4.2:3280106-3280125 | None:intergenic | 30.0% |
| AGAAGGAATCAAGGATACTT+TGG | - | chr4.2:3282114-3282133 | MS.gene06171:CDS | 35.0% | |
| AGACTGAAGTTTGACAAAGA+AGG | + | chr4.2:3281566-3281585 | None:intergenic | 35.0% | |
| AGATGGAAATCAACAAGACT+TGG | + | chr4.2:3281506-3281525 | None:intergenic | 35.0% | |
| AGGTGTGAGAGATTAATCTT+AGG | + | chr4.2:3281428-3281447 | None:intergenic | 35.0% | |
| ATAAGAAGCTGACTAACAAG+TGG | + | chr4.2:3280362-3280381 | None:intergenic | 35.0% | |
| ATATGATAGAGTCGGTTGAT+CGG | - | chr4.2:3280739-3280758 | MS.gene06171:CDS | 35.0% | |
| ATCTGATGATCTTCACCTTA+CGG | - | chr4.2:3280216-3280235 | MS.gene06171:CDS | 35.0% | |
| CGCCACAAATATAACTCTAA+AGG | + | chr4.2:3281161-3281180 | None:intergenic | 35.0% | |
| CTTAGAATTTCTACAACCAG+CGG | + | chr4.2:3279932-3279951 | None:intergenic | 35.0% | |
| GACTCTTGAGTTTGTAAGAT+TGG | - | chr4.2:3281319-3281338 | MS.gene06171:intron | 35.0% | |
| GCAGATATAACCAAAGAAAG+AGG | + | chr4.2:3281482-3281501 | None:intergenic | 35.0% | |
| GCAGGTTAAGTTTGGAAAAT+GGG | - | chr4.2:3281873-3281892 | MS.gene06171:CDS | 35.0% | |
| GTTTGTAAGATTGGATGATG+AGG | - | chr4.2:3281328-3281347 | MS.gene06171:intron | 35.0% | |
| TAAGTTTGGAAAATGGGACT+GGG | - | chr4.2:3281879-3281898 | MS.gene06171:CDS | 35.0% | |
| TACTTGTTTCCCTAACCTTA+AGG | - | chr4.2:3281367-3281386 | MS.gene06171:intron | 35.0% | |
| TAGAGTTATATTTGTGGCGT+TGG | - | chr4.2:3281162-3281181 | MS.gene06171:intron | 35.0% | |
| TCAAATGTTTCAGAAGTCTC+TGG | + | chr4.2:3280460-3280479 | None:intergenic | 35.0% | |
| TCATCTTCAAAGTCGTCAAA+GGG | + | chr4.2:3280196-3280215 | None:intergenic | 35.0% | |
| TTAAGTTTGGAAAATGGGAC+TGG | - | chr4.2:3281878-3281897 | MS.gene06171:CDS | 35.0% | |
| TTAATCGAATTGGAAAGCGA+AGG | + | chr4.2:3280268-3280287 | None:intergenic | 35.0% | |
| TTCAAATGCTCCTCTTTCTT+TGG | - | chr4.2:3281469-3281488 | MS.gene06171:intron | 35.0% | |
| TTCATCTTCAAAGTCGTCAA+AGG | + | chr4.2:3280197-3280216 | None:intergenic | 35.0% | |
| TTTCATATCCTTTGTGCTAC+AGG | - | chr4.2:3281215-3281234 | MS.gene06171:intron | 35.0% | |
| ! | AAGGATACTTTGGTTTCAGA+TGG | - | chr4.2:3282124-3282143 | MS.gene06171:CDS | 35.0% |
| ! | ATTTCTGGGTTCAATCTTGT+TGG | - | chr4.2:3280305-3280324 | MS.gene06171:CDS | 35.0% |
| ! | CATTTTCCAAACTTAACCTG+CGG | + | chr4.2:3281874-3281893 | None:intergenic | 35.0% |
| ! | GAGCTAGTGTTGAAAAATTG+TGG | - | chr4.2:3281605-3281624 | MS.gene06171:intron | 35.0% |
| ! | TAAGTTTAGGTTATGAGGCT+TGG | - | chr4.2:3281828-3281847 | MS.gene06171:CDS | 35.0% |
| !! | CTTAATCTTATTGGTGTTGG+AGG | - | chr4.2:3281392-3281411 | MS.gene06171:intron | 35.0% |
| !!! | CTTGAAAACGGTTTTGAAAG+GGG | + | chr4.2:3280104-3280123 | None:intergenic | 35.0% |
| AAGAACAGAGAGAGTTGTAG+AGG | - | chr4.2:3281736-3281755 | MS.gene06171:CDS | 40.0% | |
| AATCTTGAATCCGTCACCAT+CGG | - | chr4.2:3280145-3280164 | MS.gene06171:CDS | 40.0% | |
| ACTAACAAGTGGAAGAGATG+AGG | + | chr4.2:3280351-3280370 | None:intergenic | 40.0% | |
| AGAGAGCGACTTAATCGAAT+TGG | + | chr4.2:3280278-3280297 | None:intergenic | 40.0% | |
| AGATGGGGAATATGGAAAGA+AGG | - | chr4.2:3282097-3282116 | MS.gene06171:CDS | 40.0% | |
| CACACCTTCAAACTTGTCAA+TGG | - | chr4.2:3281441-3281460 | MS.gene06171:intron | 40.0% | |
| CCTTCAAACTTGTCAATGGT+CGG | - | chr4.2:3281445-3281464 | MS.gene06171:intron | 40.0% | |
| CGCAGGTTAAGTTTGGAAAA+TGG | - | chr4.2:3281872-3281891 | MS.gene06171:CDS | 40.0% | |
| CTAACAAGTGGAAGAGATGA+GGG | + | chr4.2:3280350-3280369 | None:intergenic | 40.0% | |
| GAATTGAATTGTGACCGCAA+TGG | - | chr4.2:3280478-3280497 | MS.gene06171:CDS | 40.0% | |
| GAGAAGGAGGTTCTTGAAAA+CGG | + | chr4.2:3280116-3280135 | None:intergenic | 40.0% | |
| GTCTCTCTACAACAACACAA+TGG | + | chr4.2:3281697-3281716 | None:intergenic | 40.0% | |
| GTTGATCAAGTAGGAGAGTT+TGG | - | chr4.2:3281764-3281783 | MS.gene06171:CDS | 40.0% | |
| TAACAAGTGGAAGAGATGAG+GGG | + | chr4.2:3280349-3280368 | None:intergenic | 40.0% | |
| TATCTGGTGAACGTGATTTG+AGG | + | chr4.2:3280066-3280085 | None:intergenic | 40.0% | |
| TCGGATGCATATGCCTAAAA+AGG | - | chr4.2:3280758-3280777 | MS.gene06171:CDS | 40.0% | |
| TTAGATGGAGATGGGGAATA+TGG | - | chr4.2:3282089-3282108 | MS.gene06171:CDS | 40.0% | |
| TTCTTTCCGCAGGTTAAGTT+TGG | - | chr4.2:3281865-3281884 | MS.gene06171:CDS | 40.0% | |
| ! | TCTAATTTTCTATGCCGTGG+AGG | - | chr4.2:3280629-3280648 | MS.gene06171:CDS | 40.0% |
| ! | TGATTTGAGGTAACGAGAGA+TGG | + | chr4.2:3280053-3280072 | None:intergenic | 40.0% |
| !! | ATGGTGACGGATTCAAGATT+GGG | + | chr4.2:3280145-3280164 | None:intergenic | 40.0% |
| !! | GCTCTCTGTTTCTGATTTCT+GGG | - | chr4.2:3280291-3280310 | MS.gene06171:CDS | 40.0% |
| !! | TTGACAAAGAAGGTGCTTCA+AGG | + | chr4.2:3281556-3281575 | None:intergenic | 40.0% |
| AAATGTTAACGAGTGCCCCT+GGG | + | chr4.2:3281074-3281093 | None:intergenic | 45.0% | |
| AACCATAGCCTGTAGCACAA+AGG | + | chr4.2:3281226-3281245 | None:intergenic | 45.0% | |
| AACGAGAGATGGAACAGATG+AGG | + | chr4.2:3280042-3280061 | None:intergenic | 45.0% | |
| AAGTGCTTAACTAGTGTCCC+AGG | - | chr4.2:3281054-3281073 | MS.gene06171:intron | 45.0% | |
| AATTGGAGGTTAGGAACGCT+TGG | - | chr4.2:3281252-3281271 | MS.gene06171:intron | 45.0% | |
| AATTTCTACAACCAGCGGAG+AGG | + | chr4.2:3279927-3279946 | None:intergenic | 45.0% | |
| ACAATGCCTTCAGCTTGAAG+CGG | - | chr4.2:3281634-3281653 | MS.gene06171:intron | 45.0% | |
| ACAGAGAGAGTTGTAGAGGT+TGG | - | chr4.2:3281740-3281759 | MS.gene06171:CDS | 45.0% | |
| ACGAGAGATGGAACAGATGA+GGG | + | chr4.2:3280041-3280060 | None:intergenic | 45.0% | |
| AGTGCTTAACTAGTGTCCCA+GGG | - | chr4.2:3281055-3281074 | MS.gene06171:intron | 45.0% | |
| ATCCTTTGTGCTACAGGCTA+TGG | - | chr4.2:3281221-3281240 | MS.gene06171:intron | 45.0% | |
| ATCTCAAGTGTGTCAAGCCT+AGG | - | chr4.2:3281522-3281541 | MS.gene06171:intron | 45.0% | |
| ATGAGATTTCCAGCAGCACA+AGG | + | chr4.2:3282040-3282059 | None:intergenic | 45.0% | |
| ATTTCTACAACCAGCGGAGA+GGG | + | chr4.2:3279926-3279945 | None:intergenic | 45.0% | |
| CCGACCATTGACAAGTTTGA+AGG | + | chr4.2:3281448-3281467 | None:intergenic | 45.0% | |
| GACGTTTCTCTGTTCATCCA+CGG | - | chr4.2:3282004-3282023 | MS.gene06171:CDS | 45.0% | |
| GAGTCTGCATCTTGCTAGAT+CGG | + | chr4.2:3279972-3279991 | None:intergenic | 45.0% | |
| GCAAATTCCCTGGAGTTAGA+TGG | - | chr4.2:3282074-3282093 | MS.gene06171:CDS | 45.0% | |
| GCTTCAAGGAAAAGCAACCT+AGG | + | chr4.2:3281542-3281561 | None:intergenic | 45.0% | |
| TAGGCTTGACACACTTGAGA+TGG | + | chr4.2:3281523-3281542 | None:intergenic | 45.0% | |
| TTGGATAAATGCACCCTCCT+GGG | - | chr4.2:3281980-3281999 | MS.gene06171:CDS | 45.0% | |
| TTGTGCTACAGGCTATGGTT+TGG | - | chr4.2:3281226-3281245 | MS.gene06171:intron | 45.0% | |
| TTTGGATAAATGCACCCTCC+TGG | - | chr4.2:3281979-3281998 | MS.gene06171:CDS | 45.0% | |
| ! | GAGGTTGGAGTTGATCAAGT+AGG | - | chr4.2:3281755-3281774 | MS.gene06171:CDS | 45.0% |
| !! | AGAAAGCTTAAAGAGTGCCC+CGG | + | chr4.2:3280946-3280965 | None:intergenic | 45.0% |
| !! | AGAGCTTGTTGCACATATCG+TGG | - | chr4.2:3281916-3281935 | MS.gene06171:CDS | 45.0% |
| !! | AGGCTATGGTTTGGTGCAAT+TGG | - | chr4.2:3281235-3281254 | MS.gene06171:intron | 45.0% |
| !! | CGCTCTCTGTTTCTGATTTC+TGG | - | chr4.2:3280290-3280309 | MS.gene06171:CDS | 45.0% |
| !! | CTATGGTTTGGTGCAATTGG+AGG | - | chr4.2:3281238-3281257 | MS.gene06171:intron | 45.0% |
| !! | GATGGTGACGGATTCAAGAT+TGG | + | chr4.2:3280146-3280165 | None:intergenic | 45.0% |
| !! | GTTTGGTGCAATTGGAGGTT+AGG | - | chr4.2:3281243-3281262 | MS.gene06171:intron | 45.0% |
| !! | TGGTGACGGATTCAAGATTG+GGG | + | chr4.2:3280144-3280163 | None:intergenic | 45.0% |
| !! | TTATGAGGCTTGGCTTGTGA+TGG | - | chr4.2:3281838-3281857 | MS.gene06171:CDS | 45.0% |
| AAGAGAACGATCAACGCCGA+TGG | + | chr4.2:3280164-3280183 | None:intergenic | 50.0% | |
| CCCATCTCCATCTAACTCCA+GGG | + | chr4.2:3282084-3282103 | None:intergenic | 50.0% | |
| CCCTGGAGTTAGATGGAGAT+GGG | - | chr4.2:3282081-3282100 | MS.gene06171:CDS | 50.0% | |
| CCTGGAGTTAGATGGAGATG+GGG | - | chr4.2:3282082-3282101 | MS.gene06171:CDS | 50.0% | |
| CGGATTCAAGATTGGGGGAT+CGG | + | chr4.2:3280138-3280157 | None:intergenic | 50.0% | |
| CTAGATCGGTTGAGTCGTTG+AGG | + | chr4.2:3279958-3279977 | None:intergenic | 50.0% | |
| GAAATGTTAACGAGTGCCCC+TGG | + | chr4.2:3281075-3281094 | None:intergenic | 50.0% | |
| GAGGGTCAACGAACGAACTT+CGG | + | chr4.2:3280023-3280042 | None:intergenic | 50.0% | |
| GGTTTCTGCAACTGCCATTG+CGG | + | chr4.2:3280495-3280514 | None:intergenic | 50.0% | |
| GTGCTTAACTAGTGTCCCAG+GGG | - | chr4.2:3281056-3281075 | MS.gene06171:intron | 50.0% | |
| GTGTGCAGAAGCAAATTCCC+TGG | - | chr4.2:3282064-3282083 | MS.gene06171:CDS | 50.0% | |
| TCCCTGGAGTTAGATGGAGA+TGG | - | chr4.2:3282080-3282099 | MS.gene06171:CDS | 50.0% | |
| TGAACAGAGAAACGTCTCCC+AGG | + | chr4.2:3282000-3282019 | None:intergenic | 50.0% | |
| TGATGGAGAGTTCTTTCCGC+AGG | - | chr4.2:3281855-3281874 | MS.gene06171:CDS | 50.0% | |
| ! | AACGCTTGGTTAGCTGTGGA+TGG | - | chr4.2:3281266-3281285 | MS.gene06171:intron | 50.0% |
| ! | GTGATGAGGTGCTTGGTATC+TGG | + | chr4.2:3280082-3280101 | None:intergenic | 50.0% |
| ! | TAGGAACGCTTGGTTAGCTG+TGG | - | chr4.2:3281262-3281281 | MS.gene06171:intron | 50.0% |
| !! | AAAGCTTAAAGAGTGCCCCG+GGG | + | chr4.2:3280944-3280963 | None:intergenic | 50.0% |
| !! | GAAAGCTTAAAGAGTGCCCC+GGG | + | chr4.2:3280945-3280964 | None:intergenic | 50.0% |
| !! | GGTGACGGATTCAAGATTGG+GGG | + | chr4.2:3280143-3280162 | None:intergenic | 50.0% |
| !!! | CGGTTTTGAAAGGGGTGATG+AGG | + | chr4.2:3280096-3280115 | None:intergenic | 50.0% |
| ACAGAGAAACGTCTCCCAGG+AGG | + | chr4.2:3281997-3282016 | None:intergenic | 55.0% | |
| ACGATCAACGCCGATGGTGA+CGG | + | chr4.2:3280158-3280177 | None:intergenic | 55.0% | |
| CAAGATTGGGGGATCGGAGA+AGG | + | chr4.2:3280132-3280151 | None:intergenic | 55.0% | |
| CACAAGGATCAGCATCACCG+TGG | + | chr4.2:3282024-3282043 | None:intergenic | 55.0% | |
| CAGAGAAACGTCTCCCAGGA+GGG | + | chr4.2:3281996-3282015 | None:intergenic | 55.0% | |
| CCCCATCTCCATCTAACTCC+AGG | + | chr4.2:3282085-3282104 | None:intergenic | 55.0% | |
| CGAACGAACTTCGGAGGAAG+CGG | + | chr4.2:3280014-3280033 | None:intergenic | 55.0% | |
| CGCATTCCGCTTCAAGCTGA+AGG | + | chr4.2:3281643-3281662 | None:intergenic | 55.0% | |
| GATCGGTTGAGTCGTTGAGG+CGG | + | chr4.2:3279955-3279974 | None:intergenic | 55.0% | |
| GATGCTGATCCTTGTGCTGC+TGG | - | chr4.2:3282028-3282047 | MS.gene06171:CDS | 55.0% | |
| GGTCAACGAACGAACTTCGG+AGG | + | chr4.2:3280020-3280039 | None:intergenic | 55.0% | |
| TCTTGTTAACGAGTGCCCCC+GGG | - | chr4.2:3280925-3280944 | MS.gene06171:intron | 55.0% | |
| TTCGGAGGAAGCGGAGTTGA+GGG | + | chr4.2:3280005-3280024 | None:intergenic | 55.0% | |
| ! | GAAAGGGGTGATGAGGTGCT+TGG | + | chr4.2:3280089-3280108 | None:intergenic | 55.0% |
| ! | GTCTTGTTAACGAGTGCCCC+CGG | - | chr4.2:3280924-3280943 | MS.gene06171:intron | 55.0% |
| !! | AAGCTTAAAGAGTGCCCCGG+GGG | + | chr4.2:3280943-3280962 | None:intergenic | 55.0% |
| CTTCGGAGGAAGCGGAGTTG+AGG | + | chr4.2:3280006-3280025 | None:intergenic | 60.0% | |
| CTTGTTAACGAGTGCCCCCG+GGG | - | chr4.2:3280926-3280945 | MS.gene06171:intron | 60.0% | |
| GATTGGGGGATCGGAGAAGG+AGG | + | chr4.2:3280129-3280148 | None:intergenic | 60.0% | |
| GGAGAATCTACCCTCTCCGC+TGG | - | chr4.2:3279913-3279932 | MS.gene06171:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 3279911 | 3282153 | 3279911 | ID=MS.gene06171 |
| chr4.2 | mRNA | 3279911 | 3282153 | 3279911 | ID=MS.gene06171.t1;Parent=MS.gene06171 |
| chr4.2 | exon | 3281700 | 3282153 | 3281700 | ID=MS.gene06171.t1.exon1;Parent=MS.gene06171.t1 |
| chr4.2 | CDS | 3281700 | 3282153 | 3281700 | ID=cds.MS.gene06171.t1;Parent=MS.gene06171.t1 |
| chr4.2 | exon | 3279911 | 3280827 | 3279911 | ID=MS.gene06171.t1.exon2;Parent=MS.gene06171.t1 |
| chr4.2 | CDS | 3279911 | 3280827 | 3279911 | ID=cds.MS.gene06171.t1;Parent=MS.gene06171.t1 |
| Gene Sequence |
| Protein sequence |
