AlfalfaGEDB | MS.gene051780

M. sativa cultivar XinJiangDaYe / MS.gene051780

KEGG: K13464
GO: -
PFAM: PF06200.17 PF09425.13

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051780.t1	XP_003609979.1	92.7	205	11	2	1	204	1	202	6.40E-99	370.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051780.t1	Q9LMA8	36.1	255	108	9	1	203	1	252	6.8e-25	115.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051780.t1	G7JS78	92.7	205	11	2	1	204	1	202	4.6e-99	370.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene051780.t1	TF	Tify

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051780	MS.gene057422	0.85961	3.67E-63	-1.69E-46
MS.gene051780	MS.gene24789	0.96146	9.97E-120	-1.69E-46
MS.gene051780	MS.gene26683	0.86273	4.12E-64	-1.69E-46
MS.gene051780	MS.gene64493	0.846119	2.65E-59	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene025386	MS.gene051780	PPI
MS.gene062084	MS.gene051780	PPI
MS.gene068904	MS.gene051780	PPI
MS.gene26736	MS.gene051780	PPI
MS.gene85313	MS.gene051780	PPI
MS.gene85363	MS.gene051780	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051780.t1	MTR_4g124960	92.683	205	11	2	1	204	1	202	2.27e-128	360
MS.gene051780.t1	MTR_4g124960	92.571	175	10	1	1	175	1	172	1.44e-107	306
MS.gene051780.t1	MTR_2g042900	44.828	261	76	11	1	204	1	250	6.90e-49	160
MS.gene051780.t1	MTR_4g124950	63.566	129	36	2	70	190	1	126	9.85e-44	142
MS.gene051780.t1	MTR_2g042900	49.704	169	65	8	1	152	1	166	3.86e-34	122
MS.gene051780.t1	MTR_5g013530	36.478	159	71	5	76	204	5	163	6.31e-22	88.2
MS.gene051780.t1	MTR_5g013530	39.007	141	65	5	85	204	1	141	7.03e-22	87.8
MS.gene051780.t1	MTR_5g013515	35.606	132	61	2	94	201	4	135	9.05e-21	84.3
MS.gene051780.t1	MTR_5g013520	36.800	125	61	3	98	204	9	133	1.08e-20	84.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051780.t1	AT1G19180	36.328	256	106	10	1	203	1	252	4.12e-35	124
MS.gene051780.t1	AT1G19180	36.328	256	106	10	1	203	1	252	4.12e-35	124
MS.gene051780.t1	AT1G74950	35.745	235	84	10	7	180	1	229	8.62e-27	103
MS.gene051780.t1	AT1G74950	35.683	227	79	10	7	172	1	221	2.45e-23	93.2
MS.gene051780.t1	AT1G19180	39.098	133	52	5	99	203	55	186	3.50e-18	79.0

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Find 44 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAATTACCAATTAGTG+AGG	0.584879	8.2:-7703115	None:intergenic
AACTACCCTTCTTCTCCTTG+AGG	0.603992	8.2:-7702442	None:intergenic
AATCAATTACCAATTAGTGA+GGG	0.634671	8.2:-7703114	None:intergenic
ACCTAACACAAGCCATGGAG+CGG	0.623220	8.2:-7703783	None:intergenic
AGCATGCTGACTCCGCTCCA+TGG	0.562298	8.2:+7703771	MS.gene051780:CDS
AGCTCCTCAACTTTCTCAGC+AGG	0.410410	8.2:-7703027	None:intergenic
AGCTTCACTTCGTCGATTCA+TGG	0.304214	8.2:+7703286	MS.gene051780:CDS
ATGTCCGATGAAGTCGACAT+TGG	0.636880	8.2:-7702338	None:intergenic
ATTAGTGAGGGAGGTTGTTG+AGG	0.517348	8.2:-7703102	None:intergenic
ATTGTCAATTGTGCAGTTTC+TGG	0.207124	8.2:-7702967	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTGCAATGACTCAAACAA+TGG	-	chr8.2:7702884-7702903	None:intergenic	30.0%
ATTCTAAACCCCAAAACTAT+AGG	-	chr8.2:7702548-7702567	None:intergenic	30.0%
TTACAAGTTTGAGAAAACGT+AGG	-	chr8.2:7702407-7702426	None:intergenic	30.0%
TTCTCTATTCGGTTACAATT+GGG	+	chr8.2:7702667-7702686	MS.gene051780:intron	30.0%
TTTCTCTATTCGGTTACAAT+TGG	+	chr8.2:7702666-7702685	MS.gene051780:intron	30.0%
ACCGAAAAACCTTACAACTA+TGG	+	chr8.2:7702790-7702809	MS.gene051780:CDS	35.0%
ATGCATGCATAGCATAAATC+TGG	+	chr8.2:7703509-7703528	MS.gene051780:intron	35.0%
ATTGTCAATTGTGCAGTTTC+TGG	-	chr8.2:7702970-7702989	None:intergenic	35.0%
ATTTCCAGTCACACAAAGAA+AGG	-	chr8.2:7703535-7703554	None:intergenic	35.0%
CAACAAACTGATAAAGTCGT+CGG	+	chr8.2:7702376-7702395	MS.gene051780:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	7702341	7703820	7702341	ID=MS.gene051780
chr8.2	mRNA	7702341	7703820	7702341	ID=MS.gene051780.t1;Parent=MS.gene051780
chr8.2	exon	7702341	7702509	7702341	ID=MS.gene051780.t1.exon1;Parent=MS.gene051780.t1
chr8.2	CDS	7702341	7702509	7702341	ID=cds.MS.gene051780.t1;Parent=MS.gene051780.t1
chr8.2	exon	7702726	7702828	7702726	ID=MS.gene051780.t1.exon2;Parent=MS.gene051780.t1
chr8.2	CDS	7702726	7702828	7702726	ID=cds.MS.gene051780.t1;Parent=MS.gene051780.t1
chr8.2	exon	7702942	7703126	7702942	ID=MS.gene051780.t1.exon3;Parent=MS.gene051780.t1
chr8.2	CDS	7702942	7703126	7702942	ID=cds.MS.gene051780.t1;Parent=MS.gene051780.t1
chr8.2	exon	7703267	7703324	7703267	ID=MS.gene051780.t1.exon4;Parent=MS.gene051780.t1
chr8.2	CDS	7703267	7703324	7703267	ID=cds.MS.gene051780.t1;Parent=MS.gene051780.t1
chr8.2	exon	7703718	7703820	7703718	ID=MS.gene051780.t1.exon5;Parent=MS.gene051780.t1
chr8.2	CDS	7703718	7703820	7703718	ID=cds.MS.gene051780.t1;Parent=MS.gene051780.t1

Gene Sequence

>MS.gene051780

ATGTCGACTTCATCGGACATTTCTGGTTTTTCCGGCAACAAACTGATAAAGTCGTCGGAGAAACCTACGTTTTCTCAAACTTGTAATCTATTGAGCCAATACCTCAAGGAGAAGAAGGGTAGTTTCGAAGGCCTTAACCTTCACAACGCATGCACCCCTGAAACAAATGGTAAATAAAAATATAAAATTATTTTCAATTCAGTTCCTATAGTTTTGGGGTTTAGAATGTTGAATCAAACTAAGTCTCAAATAGTCTTTGTTAAATGAACTTGGTCAAAAAATGGTAAAACAGAGTATAATGTCATTTCAGATATTTTCCCTTATTTTTCTCTATTCGGTTACAATTGGGTTATTTAAGTTTTCTTTTTCTTTTTTCAATCTACAGGGTCATCACCTGGTTCATCTTCTCACTCTGGAATAACCATGGATTTATTTCCCACAAACGTGACACCGAAAAACCTTACAACTATGGATTTTTTCTTTCCAAGGTGAGTTTTTGTGCTTTTTTAATTCATTCAAGTCGTCAATTAATTTTTTGTACCATTGTTTGAGTCATTGCAATTAATTTGATAATGATTTACACACAATCTTGTTTTTACAGAGTTATTAATCCTATGGTTAAAGAGCCAGAAACTGCACAATTGACAATGTTTTATAATGGACAAGTTATTGTGTTGGATGATTTTCCTGCTGAGAAAGTTGAGGAGCTGAAATCATTTGCTAGAACTCAGACTCAGCATTCAGATGTTCCTAATATGTTCCCTCAACAACCTCCCTCACTAATTGGTAATTGATTTTGAATTTGATTGATCACTGTTGTGATTGTGATTTGAAACAAATACAGGAAATTGTTTTTGGTATCAGGGATGAATTTTTTATTTTATTTATTTTTAATTTAACTGATGGTAAATTGAATTTCATTGCAGATATGCCAATTGCTAGAAAAGCTTCACTTCGTCGATTCATGGAGAAGAGGAAAGATAGGTATGCCTCTCTCTCAAACAAATTAAATTCAAGTTTTTATTCAAATAGATTCACAACAAAAAATTCTTCTGCATGTCTATGTCTATTCTTGATTGAAATGTTCAAACAATCTCATAATAAATCTTTTTTCGGTTGGTACCAACTAATTTGGATTTTGGATTGAACATTTTTTGAGCTTTTGGTGATGCATGCATAGCATAAATCTGGCCTTTCTTTGTGTGACTGGAAATTTTAGCATCATGTTATTTTCATAGTATTAAAAATCTTAATCTAGATTCTAGTCCATTGTGCAAATTGCTTTGCCTCTTGTTATTTACTTATCAAGTATTTGTTGAGTGATGTTGTTTAAGCCTAATTTAATAATATTGTTATTTTCTTATGTTGTGTTTGTAGAGTTTCTGCCTACTCACCATATCAAAGAACCTTTCCTGACTCTGCTCCAGAAAAGCATGCTGACTCCGCTCCATGGCTTGTGTTAGGTGCTAAATCAATGTAA

Protein sequence

>MS.gene051780.t1

MSTSSDISGFSGNKLIKSSEKPTFSQTCNLLSQYLKEKKGSFEGLNLHNACTPETNGSSPGSSSHSGITMDLFPTNVTPKNLTTMDFFFPRVINPMVKEPETAQLTMFYNGQVIVLDDFPAEKVEELKSFARTQTQHSDVPNMFPQQPPSLIDMPIARKASLRRFMEKRKDRVSAYSPYQRTFPDSAPEKHADSAPWLVLGAKSM