AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062236

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062236.t1 MTR_1g076690 97.414 580 15 0 1 580 1 580 0.0 1174
MS.gene062236.t1 MTR_6g061710 58.925 577 165 8 6 580 18 524 0.0 684
MS.gene062236.t1 MTR_6g016880 35.294 391 224 9 199 573 45 422 2.31e-79 257
MS.gene062236.t1 MTR_7g019120 34.430 395 234 8 187 573 46 423 4.85e-78 253
MS.gene062236.t1 MTR_8g099300 36.158 354 212 8 223 570 74 419 1.98e-77 251
MS.gene062236.t1 MTR_7g033230 34.783 437 252 13 145 572 199 611 1.07e-72 244
MS.gene062236.t1 MTR_7g033230 34.783 437 252 13 145 572 269 681 3.17e-72 244
MS.gene062236.t1 MTR_5g035090 36.813 364 199 10 223 572 83 429 6.30e-71 234
MS.gene062236.t1 MTR_8g027900 36.188 362 216 9 215 570 203 555 7.84e-71 238
MS.gene062236.t1 MTR_6g007777 35.196 358 212 9 223 573 116 460 1.33e-70 235
MS.gene062236.t1 MTR_6g016875 34.626 361 211 7 222 571 63 409 2.45e-70 233
MS.gene062236.t1 MTR_3g109840 34.536 388 229 10 191 572 49 417 1.08e-67 226
MS.gene062236.t1 MTR_2g016060 34.439 392 216 11 197 572 36 402 1.59e-67 225
MS.gene062236.t1 MTR_5g035150 34.435 363 211 11 223 572 85 433 2.49e-65 220
MS.gene062236.t1 MTR_5g035080 34.167 360 215 10 223 572 75 422 3.78e-65 219
MS.gene062236.t1 MTR_8g104970 36.338 355 212 10 223 571 120 466 1.19e-64 219
MS.gene062236.t1 MTR_5g035070 36.011 361 208 10 223 572 87 435 4.96e-61 209
MS.gene062236.t1 MTR_7g093450 29.691 485 260 17 144 575 137 593 2.83e-53 191
MS.gene062236.t1 MTR_7g094750 33.607 366 207 10 223 573 91 435 9.12e-53 187
MS.gene062236.t1 MTR_0136s0010 29.736 417 240 14 176 566 116 505 1.85e-52 187
MS.gene062236.t1 MTR_5g033800 31.579 380 222 11 198 566 127 479 5.36e-51 183
MS.gene062236.t1 MTR_8g093870 31.122 392 212 14 204 570 114 472 7.78e-51 182
MS.gene062236.t1 MTR_4g125060 29.356 528 277 20 96 570 26 510 2.53e-50 181
MS.gene062236.t1 MTR_4g126950 30.108 372 222 9 209 566 95 442 1.60e-49 178
MS.gene062236.t1 MTR_4g125060 28.827 503 266 18 121 570 76 539 1.91e-49 180
MS.gene062236.t1 MTR_8g069790 30.623 369 213 11 215 566 170 512 1.30e-48 177
MS.gene062236.t1 MTR_7g109550 31.707 369 187 14 223 567 137 464 2.19e-48 175
MS.gene062236.t1 MTR_4g125060 31.316 380 205 14 215 570 124 471 3.75e-48 174
MS.gene062236.t1 MTR_2g022560 32.514 366 206 9 222 570 96 437 6.71e-48 174
MS.gene062236.t1 MTR_5g071350 31.034 377 224 11 205 566 40 395 1.94e-47 171
MS.gene062236.t1 MTR_5g059400 30.263 380 210 12 219 572 171 521 1.03e-46 172
MS.gene062236.t1 MTR_1g116130 30.263 380 210 12 219 572 171 521 1.03e-46 172
MS.gene062236.t1 MTR_8g463790 28.723 376 227 13 219 578 67 417 3.19e-45 165
MS.gene062236.t1 MTR_4g121560 29.477 363 222 9 221 570 112 453 8.67e-45 165
MS.gene062236.t1 MTR_3g049330 29.670 364 210 12 212 566 20 346 6.89e-41 152
MS.gene062236.t1 MTR_1g112210 30.791 354 188 14 223 566 59 365 7.58e-41 152
MS.gene062236.t1 MTR_1g112210 30.447 358 197 14 223 566 59 378 1.57e-40 151
MS.gene062236.t1 MTR_1g058380 29.952 414 215 15 204 580 29 404 1.71e-40 152
MS.gene062236.t1 MTR_1g050448 30.749 374 217 13 204 570 37 375 2.12e-39 148
MS.gene062236.t1 MTR_5g083260 28.866 388 241 16 195 567 54 421 9.19e-39 147
MS.gene062236.t1 MTR_3g070900 30.833 360 213 14 223 566 106 445 1.86e-38 147
MS.gene062236.t1 MTR_4g014440 28.184 369 225 12 221 570 60 407 3.24e-38 145
MS.gene062236.t1 MTR_4g014430 27.778 378 226 15 212 570 97 446 1.13e-37 145
MS.gene062236.t1 MTR_7g070060 28.232 379 244 13 205 570 46 409 1.37e-37 144
MS.gene062236.t1 MTR_3g071650 27.990 393 256 14 185 567 52 427 1.54e-37 144
MS.gene062236.t1 MTR_3g021060 29.891 368 188 13 223 570 46 363 2.84e-37 142
MS.gene062236.t1 MTR_3g464570 28.056 360 213 11 223 566 43 372 5.07e-37 142
MS.gene062236.t1 MTR_1g111010 32.033 359 184 16 223 570 32 341 7.41e-37 140
MS.gene062236.t1 MTR_8g093530 26.525 377 232 11 211 575 78 421 1.63e-36 141
MS.gene062236.t1 MTR_3g035830 28.415 366 188 13 223 566 31 344 2.00e-36 139
MS.gene062236.t1 MTR_2g073510 29.333 375 206 17 212 570 22 353 2.73e-36 139
MS.gene062236.t1 MTR_3g090120 28.763 372 214 14 222 576 128 465 3.73e-36 141
MS.gene062236.t1 MTR_2g015720 30.471 361 194 16 219 566 38 354 3.11e-35 136
MS.gene062236.t1 MTR_2g091175 30.199 351 200 13 223 566 50 362 3.21e-35 136
MS.gene062236.t1 MTR_3g021090 28.689 366 187 13 223 566 31 344 6.74e-35 136
MS.gene062236.t1 MTR_4g079700 29.577 355 197 14 223 566 47 359 9.85e-35 135
MS.gene062236.t1 MTR_5g034810 26.823 384 237 12 190 566 2 348 2.82e-34 133
MS.gene062236.t1 MTR_7g019140 50.476 105 52 0 211 315 67 171 4.14e-34 127
MS.gene062236.t1 MTR_5g082880 27.869 366 219 13 223 566 165 507 1.32e-33 134
MS.gene062236.t1 MTR_4g088030 28.371 356 207 12 220 566 30 346 2.24e-33 130
MS.gene062236.t1 MTR_4g016940 26.648 364 229 14 223 570 86 427 1.02e-32 130
MS.gene062236.t1 MTR_7g068920 25.620 363 234 13 223 570 80 421 2.09e-32 129
MS.gene062236.t1 MTR_7g094750 34.146 246 142 7 223 456 91 328 5.96e-32 126
MS.gene062236.t1 MTR_4g092830 27.198 364 230 12 223 570 48 392 9.47e-32 128
MS.gene062236.t1 MTR_2g073500 29.086 361 201 14 218 566 24 341 3.31e-31 124
MS.gene062236.t1 MTR_5g035120 51.685 89 43 0 223 311 75 163 3.90e-31 119
MS.gene062236.t1 MTR_5g033800 35.294 204 116 5 198 393 127 322 3.79e-30 122
MS.gene062236.t1 MTR_4g087730 28.571 350 208 13 223 566 45 358 1.00e-29 120
MS.gene062236.t1 MTR_5g035140 31.660 259 150 12 327 573 25 268 2.73e-28 114
MS.gene062236.t1 MTR_6g016240 24.934 377 235 12 215 568 63 414 3.34e-28 117
MS.gene062236.t1 MTR_7g070060 44.444 108 59 1 205 311 46 153 1.70e-25 107
MS.gene062236.t1 MTR_3g464570 25.424 295 174 11 287 565 3 267 3.29e-16 79.7
MS.gene062236.t1 MTR_7g070060 24.351 308 206 12 275 570 15 307 3.24e-15 77.4
MS.gene062236.t1 MTR_0929s0010 40.476 84 47 1 187 270 46 126 6.75e-14 69.3
MS.gene062236.t1 MTR_5g069320 24.579 297 147 11 278 563 156 386 1.03e-13 73.6
MS.gene062236.t1 MTR_7g019130 31.068 103 69 1 359 461 24 124 1.50e-13 68.6
MS.gene062236.t1 MTR_7g117160 34.043 94 54 2 476 569 104 189 4.21e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062236.t1 AT4G25360 55.517 580 187 9 5 578 18 532 0.0 640
MS.gene062236.t1 AT4G25360 55.517 580 187 9 5 578 18 532 0.0 640
MS.gene062236.t1 AT5G51640 73.995 373 94 2 211 580 126 498 0.0 619
MS.gene062236.t1 AT5G15900 38.692 367 202 10 220 577 64 416 1.27e-82 265
MS.gene062236.t1 AT5G15900 38.692 367 202 10 220 577 83 435 1.55e-82 265
MS.gene062236.t1 AT1G01430 37.340 391 227 11 192 570 63 447 2.01e-80 260
MS.gene062236.t1 AT5G15890 35.872 407 230 9 177 571 136 523 8.23e-80 261
MS.gene062236.t1 AT4G11090 38.642 383 218 11 197 570 51 425 1.57e-78 254
MS.gene062236.t1 AT4G23790 37.360 356 208 8 223 570 79 427 5.57e-77 250
MS.gene062236.t1 AT4G01080 38.587 368 208 9 214 575 81 436 1.24e-75 247
MS.gene062236.t1 AT3G02440 32.020 406 257 8 173 571 76 469 1.39e-75 248
MS.gene062236.t1 AT1G70230 38.462 364 181 11 223 572 79 413 1.42e-75 246
MS.gene062236.t1 AT3G02440 32.020 406 257 8 173 571 84 477 1.52e-75 248
MS.gene062236.t1 AT3G28150 32.410 361 223 8 219 572 66 412 2.14e-65 219
MS.gene062236.t1 AT1G60790 29.938 481 279 16 110 566 82 528 1.97e-52 188
MS.gene062236.t1 AT5G49340 31.105 389 217 9 200 566 78 437 3.95e-52 185
MS.gene062236.t1 AT5G20590 32.964 361 201 11 222 566 140 475 2.30e-51 184
MS.gene062236.t1 AT3G06080 30.481 374 213 10 221 573 101 448 2.18e-48 175
MS.gene062236.t1 AT5G06700 29.700 367 213 11 223 570 255 595 2.28e-48 178
MS.gene062236.t1 AT5G19160 30.667 375 225 11 221 579 97 452 1.78e-47 172
MS.gene062236.t1 AT5G20680 28.954 411 232 12 186 570 81 457 2.34e-47 172
MS.gene062236.t1 AT1G73140 30.997 371 225 11 213 572 57 407 2.45e-47 171
MS.gene062236.t1 AT5G20680 26.731 520 318 14 78 570 50 533 2.95e-47 174
MS.gene062236.t1 AT5G20680 26.731 520 318 14 78 570 68 551 3.91e-47 174
MS.gene062236.t1 AT5G20680 26.731 520 318 14 78 570 68 551 3.91e-47 174
MS.gene062236.t1 AT5G20680 26.731 520 318 14 78 570 68 551 3.91e-47 174
MS.gene062236.t1 AT5G20680 26.731 520 318 14 78 570 68 551 3.91e-47 174
MS.gene062236.t1 AT5G64020 30.890 382 200 17 223 570 57 408 9.18e-47 169
MS.gene062236.t1 AT3G12060 27.293 458 300 12 131 577 109 544 3.74e-46 171
MS.gene062236.t1 AT3G62390 29.526 359 209 9 223 566 138 467 1.27e-45 168
MS.gene062236.t1 AT5G06230 29.333 375 221 12 212 566 10 360 5.70e-43 158
MS.gene062236.t1 AT5G06230 29.333 375 221 12 212 566 51 401 2.32e-42 157
MS.gene062236.t1 AT2G40160 28.455 369 228 13 223 573 77 427 1.64e-41 155
MS.gene062236.t1 AT2G40160 28.533 368 227 13 223 572 77 426 4.48e-41 154
MS.gene062236.t1 AT2G30010 30.628 382 215 13 207 566 39 392 6.04e-41 153
MS.gene062236.t1 AT2G30010 30.628 382 215 13 207 566 82 435 1.11e-40 153
MS.gene062236.t1 AT2G30900 29.859 355 202 12 223 566 43 361 1.63e-40 151
MS.gene062236.t1 AT5G64470 28.184 369 215 14 223 570 55 394 3.99e-40 151
MS.gene062236.t1 AT3G11570 30.409 342 200 12 239 566 98 415 4.00e-40 151
MS.gene062236.t1 AT3G14850 29.609 358 199 13 222 566 33 350 8.36e-40 149
MS.gene062236.t1 AT5G64470 28.108 370 220 14 223 570 55 400 5.08e-39 148
MS.gene062236.t1 AT2G40320 28.609 381 233 16 204 567 61 419 8.57e-39 148
MS.gene062236.t1 AT3G54260 30.556 360 202 12 223 570 51 374 9.82e-39 146
MS.gene062236.t1 AT3G11030 26.849 365 242 12 213 567 96 445 8.99e-38 145
MS.gene062236.t1 AT2G14530 26.764 411 247 15 184 570 26 406 1.35e-37 144
MS.gene062236.t1 AT2G31110 30.110 362 209 14 213 566 33 358 1.88e-37 142
MS.gene062236.t1 AT1G48880 27.614 373 223 11 212 573 106 442 1.00e-36 142
MS.gene062236.t1 AT2G37720 27.224 371 210 13 223 567 143 479 3.00e-36 142
MS.gene062236.t1 AT1G29050 29.692 357 207 13 221 570 59 378 3.30e-36 139
MS.gene062236.t1 AT5G01620 29.058 382 219 17 211 570 98 449 7.16e-36 140
MS.gene062236.t1 AT5G01620 29.058 382 219 17 211 570 98 449 7.16e-36 140
MS.gene062236.t1 AT5G01620 29.730 370 208 17 223 570 118 457 8.34e-36 140
MS.gene062236.t1 AT2G34070 28.099 363 206 14 221 570 63 383 2.53e-35 137
MS.gene062236.t1 AT2G40150 27.363 402 253 12 193 573 41 424 3.23e-35 137
MS.gene062236.t1 AT2G38320 27.901 405 233 18 193 570 32 404 1.07e-34 136
MS.gene062236.t1 AT5G58600 28.108 370 215 12 220 570 63 400 2.51e-33 132
MS.gene062236.t1 AT2G42570 26.913 379 235 11 198 570 22 364 3.58e-33 130
MS.gene062236.t1 AT5G01360 26.503 366 222 12 223 567 36 375 5.07e-33 130
MS.gene062236.t1 AT5G01360 26.503 366 222 12 223 567 92 431 1.23e-32 130
MS.gene062236.t1 AT1G78710 28.075 374 203 16 212 566 26 352 9.07e-32 126
MS.gene062236.t1 AT3G55990 27.586 377 216 15 223 572 140 486 3.40e-30 124
MS.gene062236.t1 AT3G62390 54.639 97 43 1 223 318 138 234 1.35e-29 121
MS.gene062236.t1 AT5G20590 33.065 248 144 7 222 456 140 378 2.78e-29 120
MS.gene062236.t1 AT5G19160 29.675 246 155 6 221 455 97 335 2.21e-28 116
MS.gene062236.t1 AT2G38320 27.907 344 193 16 253 570 7 321 3.00e-27 113
MS.gene062236.t1 AT3G06080 29.644 253 148 7 221 456 101 340 6.01e-27 112
MS.gene062236.t1 AT2G40160 32.432 185 118 4 223 401 77 260 2.28e-26 110
MS.gene062236.t1 AT5G64470 29.057 265 152 10 223 466 55 304 1.14e-25 108
MS.gene062236.t1 AT5G64470 29.057 265 152 10 223 466 55 304 1.44e-25 107
MS.gene062236.t1 AT2G30900 34.286 175 98 7 223 390 43 207 4.50e-25 105
MS.gene062236.t1 AT2G31110 35.484 186 105 6 215 394 35 211 4.73e-25 105
MS.gene062236.t1 AT5G06230 28.464 267 161 9 212 458 51 307 2.78e-22 98.2
MS.gene062236.t1 AT1G78710 37.500 120 72 2 193 311 1 118 1.87e-21 95.5
MS.gene062236.t1 AT5G58600 44.086 93 51 1 220 311 63 155 4.84e-21 94.4
MS.gene062236.t1 AT3G14850 25.874 286 159 13 294 566 2 247 5.00e-14 72.8
MS.gene062236.t1 AT2G34070 24.825 286 160 14 294 566 2 245 3.34e-12 67.4

Find 172 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACGTTTAGTGATCTTATT+TGG 0.114557 1.1:-57545557 None:intergenic
TCAGGCTTCTTTACTGATTC+TGG 0.163701 1.1:-57541447 None:intergenic
AGGACAACCACGTCAAAATT+TGG 0.190228 1.1:-57545089 None:intergenic
TCAATAGAAGCAACATTTAT+AGG 0.210296 1.1:-57541006 None:intergenic
ATGGTCATCCTGGGCCTTAC+AGG 0.251182 1.1:+57545525 MS.gene062236:CDS
ACCATCCAAGACCACTTTCT+TGG 0.251239 1.1:+57540845 MS.gene062236:CDS
CCGATTGGTGCCACGTTTCA+TGG 0.257508 1.1:+57540934 MS.gene062236:CDS
TAAATCGAAGTTGAGGTTAA+TGG 0.271450 1.1:+57545472 MS.gene062236:CDS
TGTGGCGGTGGCCTTCCATC+TGG 0.278954 1.1:-57545581 None:intergenic
TGCCCCTGACCCGAAGTTAA+TGG 0.289127 1.1:+57545058 MS.gene062236:CDS
TTACGATTTCCCCGATTCTT+TGG 0.311708 1.1:-57544909 None:intergenic
CCAAACGAAGTCGTGGGTTT+TGG 0.314418 1.1:-57541192 None:intergenic
GCATGACCCACCGGTGTTCC+AGG 0.323014 1.1:-57545336 None:intergenic
GACGTGGTTGTCCTTTCTTC+CGG 0.330743 1.1:+57545098 MS.gene062236:CDS
TCTAATACCACCCGTCAAAT+TGG 0.331043 1.1:-57541319 None:intergenic
ATGCATGAGCAACAGGTTAC+AGG 0.340638 1.1:+57545419 MS.gene062236:CDS
GGGAAGACCTTGGCTTTCAT+TGG 0.343839 1.1:+57543791 MS.gene062236:CDS
AACTTCAAGTGCAACTGTTT+CGG 0.351632 1.1:+57541275 MS.gene062236:CDS
TTAGTGATCTTATTTGGGTC+AGG 0.357250 1.1:-57545551 None:intergenic
CACGTTTAGTGATCTTATTT+GGG 0.366019 1.1:-57545556 None:intergenic
TACACAACATTGATTCCATT+TGG 0.372534 1.1:-57543832 None:intergenic
GCCTGTTGCACTTGGTGAAC+TGG 0.373204 1.1:+57545373 MS.gene062236:CDS
TTGTCCTTTCTTCCGGTCAT+TGG 0.374487 1.1:+57545105 MS.gene062236:CDS
TCTGAGAAGTTAGATGTATC+TGG 0.378480 1.1:+57540979 MS.gene062236:CDS
GTGATCTGTACCATGGGAAT+TGG 0.379220 1.1:+57543594 MS.gene062236:CDS
TGCAGAATTGCCAGGGTAAT+GGG 0.379873 1.1:+57543675 MS.gene062236:CDS
CCAAAACCCACGACTTCGTT+TGG 0.383660 1.1:+57541192 MS.gene062236:CDS
TGCTTGCACTGGTGCATGCC+AGG 0.387421 1.1:+57545608 MS.gene062236:CDS
TTCATCTGCTTGGACTTGTC+TGG 0.388587 1.1:-57545188 None:intergenic
GGACAACCACGTCAAAATTT+GGG 0.391976 1.1:-57545088 None:intergenic
TTCCAAGACAAGTTCATTCC+AGG 0.392884 1.1:-57545642 None:intergenic
ACCAGTTCACCAAGTGCAAC+AGG 0.396065 1.1:-57545374 None:intergenic
GGATATGTTCCATTAACTTC+GGG 0.398865 1.1:-57545067 None:intergenic
TGTTCCATTAACTTCGGGTC+AGG 0.405587 1.1:-57545062 None:intergenic
TGCCGGTTCTTCCAATTTGA+CGG 0.407032 1.1:+57541308 MS.gene062236:CDS
CTGTAATGATAGTCCGGATA+TGG 0.407364 1.1:+57544961 MS.gene062236:CDS
TACCGACATGATGGTCATCC+TGG 0.409265 1.1:+57545515 MS.gene062236:CDS
GTTGTTGACCTTCATCTGCT+TGG 0.410264 1.1:-57545198 None:intergenic
AGATGGAAGGCCACCGCCAC+AGG 0.412614 1.1:+57545583 MS.gene062236:CDS
TTTGGGTCAGGGCTCCTGTA+AGG 0.416109 1.1:-57545539 None:intergenic
TGATCATTTGAAACCGTAGA+AGG 0.416358 1.1:-57541354 None:intergenic
CCGGCATTGGATGCGTTGTC+AGG 0.417008 1.1:-57541465 None:intergenic
CTGACAAAGATTATGAGAAT+TGG 0.417959 1.1:+57543702 MS.gene062236:CDS
ACCCGTCAAATTGGAAGAAC+CGG 0.418466 1.1:-57541310 None:intergenic
ATGCAGAATTGCCAGGGTAA+TGG 0.425214 1.1:+57543674 MS.gene062236:CDS
CTCATAATGATCTGGTGAAT+AGG 0.425680 1.1:-57545306 None:intergenic
ACAATCCAAGAAAGTGGTCT+TGG 0.428546 1.1:-57540850 None:intergenic
AATGCCGGTTCAGTTAATTC+AGG 0.433625 1.1:+57541480 MS.gene062236:CDS
AAATACGATGCATGAGCAAC+AGG 0.433872 1.1:+57545412 MS.gene062236:CDS
GTGGCGGTGGCCTTCCATCT+GGG 0.434365 1.1:-57545580 None:intergenic
TATCTTGAATAACGAGATAG+TGG 0.435893 1.1:+57545148 MS.gene062236:CDS
AACACCGGTGGGTCATGCAC+TGG 0.441439 1.1:+57545341 MS.gene062236:CDS
ACTTGTGAATTTGCTTGAGC+AGG 0.443123 1.1:-57541246 None:intergenic
CAATTCTCATAATCTTTGTC+AGG 0.443282 1.1:-57543701 None:intergenic
TTCTGCATCTGTGTCAATAC+AGG 0.448339 1.1:-57543659 None:intergenic
TGAATTAACTGAACCGGCAT+TGG 0.450829 1.1:-57541478 None:intergenic
AGGTAGAGGTACCAAAGAAT+CGG 0.451259 1.1:+57544898 MS.gene062236:intron
ATCATTATGAGGGTGGAGCC+TGG 0.451662 1.1:+57545318 MS.gene062236:CDS
GCCGGTTCTTCCAATTTGAC+GGG 0.453765 1.1:+57541309 MS.gene062236:CDS
ACATCCCACGATTTGATCCT+AGG 0.458286 1.1:+57543747 MS.gene062236:CDS
CTTGGTGAACTGGTAGAAAA+CGG 0.458499 1.1:+57545383 MS.gene062236:CDS
GGTAGAGGTACCAAAGAATC+GGG 0.459715 1.1:+57544899 MS.gene062236:intron
TACCTGGAATGAACTTGTCT+TGG 0.460482 1.1:+57545640 MS.gene062236:CDS
ATTGCGAGACCTTTGTAAGT+TGG 0.460750 1.1:-57545275 None:intergenic
TTCAGTAGCTCGAAACCAAA+TGG 0.465522 1.1:+57543817 MS.gene062236:CDS
GGGATATGTTCCATTAACTT+CGG 0.466003 1.1:-57545068 None:intergenic
CCATGAAACGTGGCACCAAT+CGG 0.466696 1.1:-57540934 None:intergenic
TGCCAGGTCCTGTCGATACC+TGG 0.468729 1.1:+57545624 MS.gene062236:CDS
TCAGGGCTCCTGTAAGGCCC+AGG 0.476391 1.1:-57545533 None:intergenic
TGATCTGTACCATGGGAATT+GGG 0.480897 1.1:+57543595 MS.gene062236:CDS
CGATGGTGTAATGACACTTC+CGG 0.482330 1.1:-57541379 None:intergenic
GTAACCTGAATTAACTGAAC+CGG 0.483044 1.1:-57541484 None:intergenic
TTCCGAGTTTGAAGTGGTAT+CGG 0.483511 1.1:-57541091 None:intergenic
ACAAAGGTCTCGCAATTGTT+CGG 0.487631 1.1:+57545282 MS.gene062236:CDS
TTGAGCAGGCAAACTAGTAT+TGG 0.488542 1.1:-57541232 None:intergenic
GAGGGTGGAGCCTGGAACAC+CGG 0.488669 1.1:+57545326 MS.gene062236:CDS
GCAACTGTTTCGGTTGAAGC+AGG 0.488742 1.1:+57541285 MS.gene062236:CDS
CAAACCAATGACCGGAAGAA+AGG 0.492984 1.1:-57545109 None:intergenic
GACACAGATGCAGAATTGCC+AGG 0.493240 1.1:+57543667 MS.gene062236:CDS
TGCAAGCAATCCTGTGGCGG+TGG 0.493660 1.1:-57545593 None:intergenic
CAAGCCATGAGGACCATATC+CGG 0.494364 1.1:-57544974 None:intergenic
TTGGTGAACTGGTAGAAAAC+GGG 0.495173 1.1:+57545384 MS.gene062236:CDS
GGTGGAGCCTGGAACACCGG+TGG 0.496840 1.1:+57545329 MS.gene062236:CDS
GTCATGGAGGTTTCCTTCGA+TGG 0.497520 1.1:-57541396 None:intergenic
GCTCCACCCTCATAATGATC+TGG 0.502988 1.1:-57545314 None:intergenic
TCGTGGGATGTCACACTGAA+AGG 0.503362 1.1:-57543735 None:intergenic
TAGTGATCTTATTTGGGTCA+GGG 0.503772 1.1:-57545550 None:intergenic
GTTCTTGTTTCATCGCCGAT+TGG 0.503785 1.1:+57540919 MS.gene062236:CDS
GAATTGGGTACATGATCCAT+TGG 0.511270 1.1:+57543610 MS.gene062236:CDS
ATCACTAAACGTGGCCCAGA+TGG 0.514346 1.1:+57545566 MS.gene062236:CDS
GTTCCATTAACTTCGGGTCA+GGG 0.514562 1.1:-57545061 None:intergenic
CGCCACAGGATTGCTTGCAC+TGG 0.514703 1.1:+57545597 MS.gene062236:CDS
GTTTCGGTTGAAGCAGGTGC+CGG 0.515679 1.1:+57541291 MS.gene062236:CDS
CCGCATCTGTAATGATAGTC+CGG 0.516536 1.1:+57544955 MS.gene062236:CDS
CGTGGGATGTCACACTGAAA+GGG 0.519480 1.1:-57543734 None:intergenic
CTATTCACCAGATCATTATG+AGG 0.520724 1.1:+57545307 MS.gene062236:CDS
TGGAGCTTATCCACACCAGC+TGG 0.522748 1.1:-57545029 None:intergenic
AAAACAACAATCCAAGAAAG+TGG 0.527041 1.1:-57540856 None:intergenic
TTCTGGAACGGCTGTTGATG+TGG 0.528255 1.1:-57541430 None:intergenic
AGATAGTGGGAGGACAGTTA+TGG 0.528309 1.1:+57545162 MS.gene062236:CDS
TTAGATTCACAATCTTCCAC+TGG 0.528340 1.1:+57541042 MS.gene062236:CDS
CTTCTTTACTGATTCTGGAA+CGG 0.529963 1.1:-57541442 None:intergenic
CCAGCTGGAGCATAATCAAA+TGG 0.539143 1.1:-57545014 None:intergenic
ACGGTTTCAAATGATCAGTC+CGG 0.539282 1.1:+57541360 MS.gene062236:CDS
CATGTATTGTTTGTGTAAAG+TGG 0.539629 1.1:-57543635 None:intergenic
AATGTTGTGTATTCTGTGGC+AGG 0.542105 1.1:+57543844 MS.gene062236:CDS
TCGGGTCAGGGGCATCAAGA+TGG 0.543725 1.1:-57545049 None:intergenic
TTCCAGGTATCGACAGGACC+TGG 0.544847 1.1:-57545626 None:intergenic
TTCCATTAACTTCGGGTCAG+GGG 0.544917 1.1:-57545060 None:intergenic
ACACCGGTGGGTCATGCACT+GGG 0.546027 1.1:+57545342 MS.gene062236:CDS
CCTGACAACGCATCCAATGC+CGG 0.546333 1.1:+57541465 MS.gene062236:CDS
AACCGATACCACTTCAAACT+CGG 0.546807 1.1:+57541089 MS.gene062236:CDS
GTCTACTTCCGAGTTTGAAG+TGG 0.548097 1.1:-57541097 None:intergenic
CTTCCCAGTGCATGACCCAC+CGG 0.549025 1.1:-57545345 None:intergenic
CCATTTGATTATGCTCCAGC+TGG 0.552386 1.1:+57545014 MS.gene062236:CDS
GCGTTTCAATACCGACATGA+TGG 0.557601 1.1:+57545506 MS.gene062236:CDS
TGTGGAATTATCAGAAGTCA+TGG 0.563150 1.1:-57541412 None:intergenic
GCTGATGAGAGGGAAGACCT+TGG 0.564264 1.1:+57543781 MS.gene062236:CDS
TCCAAGAAAGTGGTCTTGGA+TGG 0.565929 1.1:-57540846 None:intergenic
AATTGGGTACATGATCCATT+GGG 0.567737 1.1:+57543611 MS.gene062236:CDS
AGACAAGTCCAAGCAGATGA+AGG 0.568935 1.1:+57545190 MS.gene062236:CDS
ATCATTTGAAACCGTAGAAG+GGG 0.570128 1.1:-57541352 None:intergenic
GTTTGGCGATAGTGTAGATA+CGG 0.570980 1.1:+57541209 MS.gene062236:CDS
TGTCAGGCCTCCCATTACCC+TGG 0.571687 1.1:-57543685 None:intergenic
ACCGACATGATGGTCATCCT+GGG 0.580029 1.1:+57545516 MS.gene062236:CDS
AGTTCATTCCAGGTATCGAC+AGG 0.581656 1.1:-57545632 None:intergenic
GTGGAGCCTGGAACACCGGT+GGG 0.582467 1.1:+57545330 MS.gene062236:CDS
GAAGATTGTGAATCTAAAGA+CGG 0.584346 1.1:-57541036 None:intergenic
GATCATTTGAAACCGTAGAA+GGG 0.584794 1.1:-57541353 None:intergenic
AAGATTATGAGAATTGGCGA+TGG 0.585427 1.1:+57543708 MS.gene062236:CDS
AAGGTTAAGCCTGTTGCACT+TGG 0.585969 1.1:+57545365 MS.gene062236:CDS
CTAAACGTGGCCCAGATGGA+AGG 0.586407 1.1:+57545570 MS.gene062236:CDS
ACTATCGCCAAACGAAGTCG+TGG 0.587257 1.1:-57541199 None:intergenic
TGAATCTCCAATGAAAGCCA+AGG 0.588688 1.1:-57543798 None:intergenic
CTGCTTAGCAAACCAATGAC+CGG 0.598348 1.1:-57545117 None:intergenic
TGATTATGCTCCAGCTGGTG+TGG 0.603990 1.1:+57545019 MS.gene062236:CDS
TAGTCCGGATATGGTCCTCA+TGG 0.607259 1.1:+57544970 MS.gene062236:CDS
ATTTCCTAGGATCAAATCGT+GGG 0.608200 1.1:-57543751 None:intergenic
CACCAGTGCAAGCAATCCTG+TGG 0.608621 1.1:-57545599 None:intergenic
CTACAAATAAATCGAAGTTG+AGG 0.609402 1.1:+57545465 MS.gene062236:CDS
TTATTGACATCCTCGCTCGT+TGG 0.611402 1.1:-57541147 None:intergenic
CGGTGGGTCATGCACTGGGA+AGG 0.611769 1.1:+57545346 MS.gene062236:CDS
GGTTCTTCCAATTTGACGGG+TGG 0.614017 1.1:+57541312 MS.gene062236:CDS
CAATAGTAAGTCTAGTTCTG+TGG 0.616322 1.1:+57541119 MS.gene062236:CDS
CAGTGCAAGCAATCCTGTGG+CGG 0.618270 1.1:-57545596 None:intergenic
TTTGTGTAAAGTGGTCCCAA+TGG 0.618822 1.1:-57543626 None:intergenic
AATTTCCTAGGATCAAATCG+TGG 0.620293 1.1:-57543752 None:intergenic
TAGTGGGAGGACAGTTATGG+TGG 0.622969 1.1:+57545165 MS.gene062236:CDS
ATCATCAAGAGAGAATATGA+AGG 0.626533 1.1:+57545665 MS.gene062236:CDS
TCACCAGATCATTATGAGGG+TGG 0.628408 1.1:+57545311 MS.gene062236:CDS
AAGTGTCATTACACCATCGA+AGG 0.631910 1.1:+57541383 MS.gene062236:CDS
TAGGCTGTGATCTGTACCAT+GGG 0.633271 1.1:+57543588 MS.gene062236:intron
GCTACACATCCAACTTACAA+AGG 0.636013 1.1:+57545266 MS.gene062236:CDS
ACACAGATGCAGAATTGCCA+GGG 0.636339 1.1:+57543668 MS.gene062236:CDS
ATCAAGAGAGAATATGAAGG+TGG 0.637532 1.1:+57545668 MS.gene062236:CDS
ATTGCTATCACTAGTACCAG+TGG 0.642216 1.1:-57541058 None:intergenic
ATCTTGAATAACGAGATAGT+GGG 0.646579 1.1:+57545149 MS.gene062236:CDS
TATTCACCAGATCATTATGA+GGG 0.649367 1.1:+57545308 MS.gene062236:CDS
TGTGGAACTTCCAACGAGCG+AGG 0.651120 1.1:+57541137 MS.gene062236:CDS
TTGAATAACGAGATAGTGGG+AGG 0.661822 1.1:+57545152 MS.gene062236:CDS
CCGGACTATCATTACAGATG+CGG 0.665544 1.1:-57544955 None:intergenic
TCATTTGAAACCGTAGAAGG+GGG 0.666824 1.1:-57541351 None:intergenic
CCAAATAAGATCACTAAACG+TGG 0.667609 1.1:+57545557 MS.gene062236:CDS
GATCATGTACCCAATTCCCA+TGG 0.672337 1.1:-57543604 None:intergenic
CTATCGCCAAACGAAGTCGT+GGG 0.675025 1.1:-57541198 None:intergenic
GCCCAGGATGACCATCATGT+CGG 0.678895 1.1:-57545517 None:intergenic
GTAGGCTGTGATCTGTACCA+TGG 0.685036 1.1:+57543587 MS.gene062236:intron
AATCAATGTTGTGTATTCTG+TGG 0.709727 1.1:+57543840 MS.gene062236:CDS
AGAATTGCCAGGGTAATGGG+AGG 0.713659 1.1:+57543678 MS.gene062236:CDS
GGAATTATCAGAAGTCATGG+AGG 0.722345 1.1:-57541409 None:intergenic
GTAGAGGTACCAAAGAATCG+GGG 0.738063 1.1:+57544900 MS.gene062236:CDS
AGTCACTTTAACAAGCCATG+AGG 0.761562 1.1:-57544985 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATTATTATTATTATT+AGG + chr1.1:57544341-57544360 MS.gene062236:intron 0.0%
!! AAAAATTAAAAAGAGAATAT+GGG - chr1.1:57541883-57541902 None:intergenic 10.0%
!! TAAAAATTAAAAAGAGAATA+TGG - chr1.1:57541884-57541903 None:intergenic 10.0%
!!! TTTCTTTTTATTAACATTTA+TGG - chr1.1:57544282-57544301 None:intergenic 10.0%
!! AAAAATTTCTTATTGTAAAC+AGG + chr1.1:57543491-57543510 MS.gene062236:intron 15.0%
!! AACAAATATAAAATACAAAC+AGG - chr1.1:57544175-57544194 None:intergenic 15.0%
!! CATATAAACATTTCTTTATT+AGG + chr1.1:57544505-57544524 MS.gene062236:intron 15.0%
!! CTCTTATTATTATTGTATTA+TGG + chr1.1:57544226-57544245 MS.gene062236:intron 15.0%
!! TTAGATAAAATAGTAATGTT+GGG - chr1.1:57541952-57541971 None:intergenic 15.0%
!! TTATTATTATTAGGTAAAAG+AGG + chr1.1:57544374-57544393 MS.gene062236:intron 15.0%
!!! GTTTGTATTTTATATTTGTT+TGG + chr1.1:57544175-57544194 MS.gene062236:intron 15.0%
!!! TATTTTATATTTGTTTGGTT+TGG + chr1.1:57544180-57544199 MS.gene062236:intron 15.0%
!! ATTTCTTTATTAGGTAAAAG+AGG + chr1.1:57544514-57544533 MS.gene062236:intron 20.0%
!! CATATGTAAATTATTAGTAG+CGG + chr1.1:57543456-57543475 MS.gene062236:intron 20.0%
!! GTTAGATAAAATAGTAATGT+TGG - chr1.1:57541953-57541972 None:intergenic 20.0%
!! TAGATAAAATAGTAATGTTG+GGG - chr1.1:57541951-57541970 None:intergenic 20.0%
!! TATTCATTTACACATACATA+GGG + chr1.1:57544783-57544802 MS.gene062236:intron 20.0%
!!! AAAAGACTAGTTTATTAAGT+GGG + chr1.1:57542649-57542668 MS.gene062236:intron 20.0%
!!! ACATGCATTTTTCTTTTTAT+TGG - chr1.1:57544644-57544663 None:intergenic 20.0%
!!! ACTTAATAAACTAGTCTTTT+GGG - chr1.1:57542649-57542668 None:intergenic 20.0%
!!! ATATGCAACGATATTATTTT+AGG + chr1.1:57544931-57544950 MS.gene062236:CDS 20.0%
!!! CTTTTTATTGGAATATACTT+TGG - chr1.1:57544632-57544651 None:intergenic 20.0%
!!! TGATGTATAATTCAAAGTTT+TGG + chr1.1:57543313-57543332 MS.gene062236:intron 20.0%
! AAAACCATTTCATTATGAAC+CGG - chr1.1:57544731-57544750 None:intergenic 25.0%
! AAAAGACATATCCTTTACAA+AGG - chr1.1:57541814-57541833 None:intergenic 25.0%
! AAAGACATATCCTTTACAAA+GGG - chr1.1:57541813-57541832 None:intergenic 25.0%
! ATAAAAATATCCATGAAACG+TGG - chr1.1:57540947-57540966 None:intergenic 25.0%
! ATAGTAGTACAAAACAAGAA+TGG - chr1.1:57541569-57541588 None:intergenic 25.0%
! ATTATGAACTCTCTAACAAT+AGG + chr1.1:57543973-57543992 MS.gene062236:intron 25.0%
! ATTATTAGGTAAAAGAGGAT+GGG + chr1.1:57544379-57544398 MS.gene062236:intron 25.0%
! ATTTAGTTGAGTACCTTAAT+CGG + chr1.1:57542552-57542571 MS.gene062236:intron 25.0%
! CAAAATTCCAGTAGATAAAA+GGG - chr1.1:57542705-57542724 None:intergenic 25.0%
! CAAAGACCAAAATAAAATAG+AGG - chr1.1:57542279-57542298 None:intergenic 25.0%
! GAGATGTGAATTTACTTTAT+TGG - chr1.1:57544119-57544138 None:intergenic 25.0%
! GTATTCATTTACACATACAT+AGG + chr1.1:57544782-57544801 MS.gene062236:intron 25.0%
! TAGAAGCTTAACTGAAAATA+TGG + chr1.1:57544868-57544887 MS.gene062236:intron 25.0%
! TATTATTAGGTAAAAGAGGA+TGG + chr1.1:57544378-57544397 MS.gene062236:intron 25.0%
! TCAATAGAAGCAACATTTAT+AGG - chr1.1:57541009-57541028 None:intergenic 25.0%
! TTAAAAAGAGAATATGGGAA+TGG - chr1.1:57541878-57541897 None:intergenic 25.0%
! TTAATTAGCAACTGAATCAA+CGG + chr1.1:57542949-57542968 MS.gene062236:intron 25.0%
! TTATGAACTCTCTAACAATA+GGG + chr1.1:57543974-57543993 MS.gene062236:intron 25.0%
! TTTAAAAAACAAGCTAGTGT+AGG - chr1.1:57541525-57541544 None:intergenic 25.0%
!! ACTGAAAATATGGTATTTTC+AGG + chr1.1:57544878-57544897 MS.gene062236:intron 25.0%
!! ATTTGATCCTAGGAAATTTT+TGG + chr1.1:57543757-57543776 MS.gene062236:CDS 25.0%
!! CTTTGTTTCAGTTATCAATT+GGG + chr1.1:57542294-57542313 MS.gene062236:intron 25.0%
!! TCTTTGTTTCAGTTATCAAT+TGG + chr1.1:57542293-57542312 MS.gene062236:intron 25.0%
!!! AATTTTGCTTTTGTACTTCT+GGG + chr1.1:57542976-57542995 MS.gene062236:intron 25.0%
!!! ACGTTTCATGGATATTTTTA+TGG + chr1.1:57540946-57540965 MS.gene062236:CDS 25.0%
!!! CAAAAGACTAGTTTATTAAG+TGG + chr1.1:57542648-57542667 MS.gene062236:intron 25.0%
!!! CACTTAATAAACTAGTCTTT+TGG - chr1.1:57542650-57542669 None:intergenic 25.0%
!!! CACTTTTATCTAGTTTATGT+GGG + chr1.1:57542413-57542432 MS.gene062236:intron 25.0%
!!! CATGGATATTTTTATGGTAT+AGG + chr1.1:57540952-57540971 MS.gene062236:CDS 25.0%
!!! CTTGTTTTTTAAATGCTTCA+TGG + chr1.1:57541532-57541551 MS.gene062236:intron 25.0%
!!! GAGTAACCTCTATTTTATTT+TGG + chr1.1:57542270-57542289 MS.gene062236:intron 25.0%
!!! GCATCAAAAATTGTTTTATG+TGG + chr1.1:57544680-57544699 MS.gene062236:intron 25.0%
!!! GTATAATTCAAAGTTTTGGT+TGG + chr1.1:57543317-57543336 MS.gene062236:intron 25.0%
!!! TAATTTTGCTTTTGTACTTC+TGG + chr1.1:57542975-57542994 MS.gene062236:intron 25.0%
AAAACAACAATCCAAGAAAG+TGG - chr1.1:57540859-57540878 None:intergenic 30.0%
AAACCATTTCATTATGAACC+GGG - chr1.1:57544730-57544749 None:intergenic 30.0%
AAATGCAGAAATTGTTGTAC+TGG - chr1.1:57544471-57544490 None:intergenic 30.0%
AAGTAAATGAGAGTGAAATC+AGG + chr1.1:57544427-57544446 MS.gene062236:intron 30.0%
AATCAATGTTGTGTATTCTG+TGG + chr1.1:57543840-57543859 MS.gene062236:CDS 30.0%
ATCATCAAGAGAGAATATGA+AGG + chr1.1:57545665-57545684 MS.gene062236:CDS 30.0%
ATCTTGAATAACGAGATAGT+GGG + chr1.1:57545149-57545168 MS.gene062236:CDS 30.0%
CAATTCTCATAATCTTTGTC+AGG - chr1.1:57543704-57543723 None:intergenic 30.0%
CATGTATTGTTTGTGTAAAG+TGG - chr1.1:57543638-57543657 None:intergenic 30.0%
CCAAAATTCCAGTAGATAAA+AGG - chr1.1:57542706-57542725 None:intergenic 30.0%
CTACAAATAAATCGAAGTTG+AGG + chr1.1:57545465-57545484 MS.gene062236:CDS 30.0%
CTGACAAAGATTATGAGAAT+TGG + chr1.1:57543702-57543721 MS.gene062236:CDS 30.0%
GAAGATTGTGAATCTAAAGA+CGG - chr1.1:57541039-57541058 None:intergenic 30.0%
GTATTACATGAAAAGTCTGA+GGG + chr1.1:57542038-57542057 MS.gene062236:intron 30.0%
TAAATCGAAGTTGAGGTTAA+TGG + chr1.1:57545472-57545491 MS.gene062236:CDS 30.0%
TATCAATTGGGCTAATTAAG+TGG + chr1.1:57542306-57542325 MS.gene062236:intron 30.0%
TATCTTGAATAACGAGATAG+TGG + chr1.1:57545148-57545167 MS.gene062236:CDS 30.0%
TATTCACCAGATCATTATGA+GGG + chr1.1:57545308-57545327 MS.gene062236:CDS 30.0%
TATTGGAATATACTTTGGCT+GGG - chr1.1:57544627-57544646 None:intergenic 30.0%
TCAATGCAGCATCATTTATT+AGG + chr1.1:57542598-57542617 MS.gene062236:intron 30.0%
TGTATTACATGAAAAGTCTG+AGG + chr1.1:57542037-57542056 MS.gene062236:intron 30.0%
TGTATTATTGCAAACTGAAC+TGG + chr1.1:57541755-57541774 MS.gene062236:intron 30.0%
TTATTAGGTAAAAGAGGATG+GGG + chr1.1:57544380-57544399 MS.gene062236:intron 30.0%
TTATTGGAATATACTTTGGC+TGG - chr1.1:57544628-57544647 None:intergenic 30.0%
TTCTTATTGTAAACAGGTGA+CGG + chr1.1:57543497-57543516 MS.gene062236:intron 30.0%
TTTACAAAGGGAAAACTCTT+GGG - chr1.1:57541801-57541820 None:intergenic 30.0%
! AGCTTCTAGCTATGATAAAA+TGG - chr1.1:57544856-57544875 None:intergenic 30.0%
! CACGTTTAGTGATCTTATTT+GGG - chr1.1:57545559-57545578 None:intergenic 30.0%
! CATTTACAGTTTGCTTTGTT+TGG + chr1.1:57544081-57544100 MS.gene062236:intron 30.0%
! CCTTTTATCTACTGGAATTT+TGG + chr1.1:57542703-57542722 MS.gene062236:intron 30.0%
! CTTGTGTTGCTATATATGTT+TGG + chr1.1:57543421-57543440 MS.gene062236:intron 30.0%
! GTCAATTTGATAGTTGTACA+TGG - chr1.1:57541843-57541862 None:intergenic 30.0%
! TTCTTTACTTCACTCTCTTT+TGG + chr1.1:57541618-57541637 MS.gene062236:intron 30.0%
! TTTATTTGTAGCCTTTTCCA+TGG - chr1.1:57545456-57545475 None:intergenic 30.0%
!! GCACTTTTATCTAGTTTATG+TGG + chr1.1:57542412-57542431 MS.gene062236:intron 30.0%
!! TACACAACATTGATTCCATT+TGG - chr1.1:57543835-57543854 None:intergenic 30.0%
!!! AATAAACTAGTCTTTTGGGT+TGG - chr1.1:57542645-57542664 None:intergenic 30.0%
!!! AATATGGTATTTTCAGGTAG+AGG + chr1.1:57544884-57544903 MS.gene062236:intron 30.0%
!!! ATGAGTGTTTTTTTGTTAGG+TGG - chr1.1:57541999-57542018 None:intergenic 30.0%
!!! GCTATGAGTGTTTTTTTGTT+AGG - chr1.1:57542002-57542021 None:intergenic 30.0%
!!! TCTTGGATTGTTGTTTTAGT+AGG + chr1.1:57540862-57540881 MS.gene062236:CDS 30.0%
AACTTCAAGTGCAACTGTTT+CGG + chr1.1:57541275-57541294 MS.gene062236:CDS 35.0%
AAGAGAATATGGGAATGGAA+AGG - chr1.1:57541873-57541892 None:intergenic 35.0%
AAGATTATGAGAATTGGCGA+TGG + chr1.1:57543708-57543727 MS.gene062236:CDS 35.0%
AATTGGGTACATGATCCATT+GGG + chr1.1:57543611-57543630 MS.gene062236:CDS 35.0%
AATTTCCTAGGATCAAATCG+TGG - chr1.1:57543755-57543774 None:intergenic 35.0%
ATACCCGGTTCATAATGAAA+TGG + chr1.1:57544724-57544743 MS.gene062236:intron 35.0%
ATCAAGAGAGAATATGAAGG+TGG + chr1.1:57545668-57545687 MS.gene062236:CDS 35.0%
ATCAGCTCCAAAAATTTCCT+AGG - chr1.1:57543767-57543786 None:intergenic 35.0%
ATTTCATTATGAACCGGGTA+TGG - chr1.1:57544725-57544744 None:intergenic 35.0%
ATTTCCTAGGATCAAATCGT+GGG - chr1.1:57543754-57543773 None:intergenic 35.0%
CCAAATAAGATCACTAAACG+TGG + chr1.1:57545557-57545576 MS.gene062236:CDS 35.0%
CCACGTTTAGTGATCTTATT+TGG - chr1.1:57545560-57545579 None:intergenic 35.0%
CCATGCAAAACAGATCAATA+AGG - chr1.1:57543888-57543907 None:intergenic 35.0%
CTAAAAACAAGCTAAAGTGG+TGG - chr1.1:57542240-57542259 None:intergenic 35.0%
CTATTCACCAGATCATTATG+AGG + chr1.1:57545307-57545326 MS.gene062236:CDS 35.0%
CTCATAATGATCTGGTGAAT+AGG - chr1.1:57545309-57545328 None:intergenic 35.0%
CTGTTCATTTCAGTTTCTCT+AGG - chr1.1:57541706-57541725 None:intergenic 35.0%
CTTTACAAAGGGAAAACTCT+TGG - chr1.1:57541802-57541821 None:intergenic 35.0%
GAAACAATTTCTGCAACATG+TGG + chr1.1:57544316-57544335 MS.gene062236:intron 35.0%
GGAACGCAATCAAATTGATT+TGG + chr1.1:57544535-57544554 MS.gene062236:intron 35.0%
GGATATGTTCCATTAACTTC+GGG - chr1.1:57545070-57545089 None:intergenic 35.0%
GGGATATGTTCCATTAACTT+CGG - chr1.1:57545071-57545090 None:intergenic 35.0%
GGTGATTTATTAGGTAAACC+AGG + chr1.1:57544404-57544423 MS.gene062236:intron 35.0%
GTAACCTGAATTAACTGAAC+CGG - chr1.1:57541487-57541506 None:intergenic 35.0%
GTACTCAACTAAATACCGAT+TGG - chr1.1:57542546-57542565 None:intergenic 35.0%
GTGCTAAAAACAAGCTAAAG+TGG - chr1.1:57542243-57542262 None:intergenic 35.0%
GTTGAATTCACAGTAGTTTC+AGG + chr1.1:57543266-57543285 MS.gene062236:intron 35.0%
TATTAGGACTTAAGTCCATG+AGG + chr1.1:57542614-57542633 MS.gene062236:intron 35.0%
TATTGTCCATTCTGTTGTGT+AGG + chr1.1:57543569-57543588 MS.gene062236:intron 35.0%
TCTCTAATAATCACCATGAC+AGG + chr1.1:57542853-57542872 MS.gene062236:intron 35.0%
TCTGAGAAGTTAGATGTATC+TGG + chr1.1:57540979-57540998 MS.gene062236:CDS 35.0%
TGTGGAATTATCAGAAGTCA+TGG - chr1.1:57541415-57541434 None:intergenic 35.0%
TTAGATTCACAATCTTCCAC+TGG + chr1.1:57541042-57541061 MS.gene062236:CDS 35.0%
TTCATGCATTTGAAGGATTC+AGG + chr1.1:57542103-57542122 MS.gene062236:intron 35.0%
TTTCACTCTCATTTACTTCC+TGG - chr1.1:57544425-57544444 None:intergenic 35.0%
! AAAATGCATGTTTTGCCACT+TGG + chr1.1:57544653-57544672 MS.gene062236:intron 35.0%
! ATCATTTGAAACCGTAGAAG+GGG - chr1.1:57541355-57541374 None:intergenic 35.0%
! CAAGAGTTTTCCCTTTGTAA+AGG + chr1.1:57541800-57541819 MS.gene062236:intron 35.0%
! CCTTATTGATCTGTTTTGCA+TGG + chr1.1:57543885-57543904 MS.gene062236:intron 35.0%
! CTATATTTTTCTCCGAGTAC+AGG + chr1.1:57542185-57542204 MS.gene062236:intron 35.0%
! GATCATTTGAAACCGTAGAA+GGG - chr1.1:57541356-57541375 None:intergenic 35.0%
! GTTTGAAATTACTCTGTGTG+AGG + chr1.1:57543535-57543554 MS.gene062236:intron 35.0%
! TAGTGATCTTATTTGGGTCA+GGG - chr1.1:57545553-57545572 None:intergenic 35.0%
! TGATCATTTGAAACCGTAGA+AGG - chr1.1:57541357-57541376 None:intergenic 35.0%
! TTAGTGATCTTATTTGGGTC+AGG - chr1.1:57545554-57545573 None:intergenic 35.0%
!! ACATATCCCAAATTTTGACG+TGG + chr1.1:57545082-57545101 MS.gene062236:CDS 35.0%
!! CAATAGTAAGTCTAGTTCTG+TGG + chr1.1:57541119-57541138 MS.gene062236:CDS 35.0%
!! CTTCTTTACTGATTCTGGAA+CGG - chr1.1:57541445-57541464 None:intergenic 35.0%
!! GGTATTGTCTTGATGATGTT+TGG + chr1.1:57542879-57542898 MS.gene062236:intron 35.0%
!!! AAATTTTTGGAGCTGATGAG+AGG + chr1.1:57543770-57543789 MS.gene062236:CDS 35.0%
!!! AATTTTTGGAGCTGATGAGA+GGG + chr1.1:57543771-57543790 MS.gene062236:CDS 35.0%
AAATACGATGCATGAGCAAC+AGG + chr1.1:57545412-57545431 MS.gene062236:CDS 40.0%
AACCGATACCACTTCAAACT+CGG + chr1.1:57541089-57541108 MS.gene062236:CDS 40.0%
AATAATCACCATGACAGGAG+TGG + chr1.1:57542858-57542877 MS.gene062236:intron 40.0%
AATGATGCTGCATTGAGAGT+CGG - chr1.1:57542594-57542613 None:intergenic 40.0%
AATGTTGTGTATTCTGTGGC+AGG + chr1.1:57543844-57543863 MS.gene062236:CDS 40.0%
ACAAAGGTCTCGCAATTGTT+CGG + chr1.1:57545282-57545301 MS.gene062236:CDS 40.0%
ACAATCCAAGAAAGTGGTCT+TGG - chr1.1:57540853-57540872 None:intergenic 40.0%
ACGGTTTCAAATGATCAGTC+CGG + chr1.1:57541360-57541379 MS.gene062236:CDS 40.0%
AGAATATGGGAATGGAAAGG+AGG - chr1.1:57541870-57541889 None:intergenic 40.0%
AGGACAACCACGTCAAAATT+TGG - chr1.1:57545092-57545111 None:intergenic 40.0%
AGTGAAACTGACGTAGAAGT+CGG - chr1.1:57542471-57542490 None:intergenic 40.0%
AGTGTGAGTATGTATGTGTG+CGG - chr1.1:57543385-57543404 None:intergenic 40.0%
ATCAAATGCATGCTGCTGAA+TGG - chr1.1:57544757-57544776 None:intergenic 40.0%
ATCCTTCAAATGCATGAAGC+AGG - chr1.1:57542101-57542120 None:intergenic 40.0%
ATTGCGAGACCTTTGTAAGT+TGG - chr1.1:57545278-57545297 None:intergenic 40.0%
ATTGCTATCACTAGTACCAG+TGG - chr1.1:57541061-57541080 None:intergenic 40.0%
CAGAAAAAACCCACTTGAGT+TGG + chr1.1:57543053-57543072 MS.gene062236:intron 40.0%
CTACGTCAGTTTCACTCTAT+CGG + chr1.1:57542475-57542494 MS.gene062236:intron 40.0%
CTGTAATGATAGTCCGGATA+TGG + chr1.1:57544961-57544980 MS.gene062236:CDS 40.0%
CTTGGTGAACTGGTAGAAAA+CGG + chr1.1:57545383-57545402 MS.gene062236:CDS 40.0%
GAATATACTTTGGCTGGGAA+AGG - chr1.1:57544622-57544641 None:intergenic 40.0%
GAATTGGGTACATGATCCAT+TGG + chr1.1:57543610-57543629 MS.gene062236:CDS 40.0%
GCTACACATCCAACTTACAA+AGG + chr1.1:57545266-57545285 MS.gene062236:CDS 40.0%
GGAATTATCAGAAGTCATGG+AGG - chr1.1:57541412-57541431 None:intergenic 40.0%
GGACAACCACGTCAAAATTT+GGG - chr1.1:57545091-57545110 None:intergenic 40.0%
GTGCTTAGCAACAACAAACA+AGG - chr1.1:57542917-57542936 None:intergenic 40.0%
GTTTGGCGATAGTGTAGATA+CGG + chr1.1:57541209-57541228 MS.gene062236:CDS 40.0%
TACATGAAAAGTCTGAGGGA+GGG + chr1.1:57542042-57542061 MS.gene062236:intron 40.0%
TACCTGGAATGAACTTGTCT+TGG + chr1.1:57545640-57545659 MS.gene062236:CDS 40.0%
TCTAATACCACCCGTCAAAT+TGG - chr1.1:57541322-57541341 None:intergenic 40.0%
TGAATCTCCAATGAAAGCCA+AGG - chr1.1:57543801-57543820 None:intergenic 40.0%
TGAATTAACTGAACCGGCAT+TGG - chr1.1:57541481-57541500 None:intergenic 40.0%
TGATCTGTACCATGGGAATT+GGG + chr1.1:57543595-57543614 MS.gene062236:CDS 40.0%
TGATTCGATTATGCGTGTCT+CGG - chr1.1:57544063-57544082 None:intergenic 40.0%
TGTGAGTGCATGTATATGTG+AGG - chr1.1:57543357-57543376 None:intergenic 40.0%
TTACATGAAAAGTCTGAGGG+AGG + chr1.1:57542041-57542060 MS.gene062236:intron 40.0%
TTACGATTTCCCCGATTCTT+TGG - chr1.1:57544912-57544931 None:intergenic 40.0%
TTCAGTAGCTCGAAACCAAA+TGG + chr1.1:57543817-57543836 MS.gene062236:CDS 40.0%
TTCCAAGACAAGTTCATTCC+AGG - chr1.1:57545645-57545664 None:intergenic 40.0%
TTCTGCATCTGTGTCAATAC+AGG - chr1.1:57543662-57543681 None:intergenic 40.0%
TTGAGCAGGCAAACTAGTAT+TGG - chr1.1:57541235-57541254 None:intergenic 40.0%
TTGGTGAACTGGTAGAAAAC+GGG + chr1.1:57545384-57545403 MS.gene062236:CDS 40.0%
TTGTTAGACTTAAGCCCATG+AGG + chr1.1:57542329-57542348 MS.gene062236:intron 40.0%
TTTGGCGTGTTTGTTTGGTA+GGG + chr1.1:57542721-57542740 MS.gene062236:intron 40.0%
TTTGTGTAAAGTGGTCCCAA+TGG - chr1.1:57543629-57543648 None:intergenic 40.0%
! AAGTGTCATTACACCATCGA+AGG + chr1.1:57541383-57541402 MS.gene062236:CDS 40.0%
! ACTTGTGAATTTGCTTGAGC+AGG - chr1.1:57541249-57541268 None:intergenic 40.0%
! AGTCACTTTAACAAGCCATG+AGG - chr1.1:57544988-57545007 None:intergenic 40.0%
! ATTTTTGATGCAGTGCCAAG+TGG - chr1.1:57544671-57544690 None:intergenic 40.0%
! CTCTGTGTGAGGCTTTTAAT+TGG + chr1.1:57543546-57543565 MS.gene062236:intron 40.0%
! TCACAGTAGTTTCAGGTGTA+TGG + chr1.1:57543273-57543292 MS.gene062236:intron 40.0%
! TCATTTGAAACCGTAGAAGG+GGG - chr1.1:57541354-57541373 None:intergenic 40.0%
! TTCCGAGTTTGAAGTGGTAT+CGG - chr1.1:57541094-57541113 None:intergenic 40.0%
! TTTTGGCGTGTTTGTTTGGT+AGG + chr1.1:57542720-57542739 MS.gene062236:intron 40.0%
!! AATGCCGGTTCAGTTAATTC+AGG + chr1.1:57541480-57541499 MS.gene062236:CDS 40.0%
!! AGGTAGAGGTACCAAAGAAT+CGG + chr1.1:57544898-57544917 MS.gene062236:intron 40.0%
!! CTAGATAAAAGTGCTCAGTG+TGG - chr1.1:57542406-57542425 None:intergenic 40.0%
!! GGAATTTTGGCGTGTTTGTT+TGG + chr1.1:57542716-57542735 MS.gene062236:intron 40.0%
!! TCAGGCTTCTTTACTGATTC+TGG - chr1.1:57541450-57541469 None:intergenic 40.0%
!! TTGAAGGATTCAGGTTGAGA+GGG + chr1.1:57542112-57542131 MS.gene062236:intron 40.0%
!! TTGAATAACGAGATAGTGGG+AGG + chr1.1:57545152-57545171 MS.gene062236:CDS 40.0%
!! TTTGAAGGATTCAGGTTGAG+AGG + chr1.1:57542111-57542130 MS.gene062236:intron 40.0%
AAAGAGGAAAGGGCTACCAT+TGG - chr1.1:57542508-57542527 None:intergenic 45.0%
AACTGAAGAACCCCCTTCTA+CGG + chr1.1:57541341-57541360 MS.gene062236:CDS 45.0%
AAGAGGAAAGGGCTACCATT+GGG - chr1.1:57542507-57542526 None:intergenic 45.0%
AAGGTTAAGCCTGTTGCACT+TGG + chr1.1:57545365-57545384 MS.gene062236:CDS 45.0%
ACACAGATGCAGAATTGCCA+GGG + chr1.1:57543668-57543687 MS.gene062236:CDS 45.0%
ACATCCCACGATTTGATCCT+AGG + chr1.1:57543747-57543766 MS.gene062236:CDS 45.0%
ACCATCCAAGACCACTTTCT+TGG + chr1.1:57540845-57540864 MS.gene062236:CDS 45.0%
ACCCGTCAAATTGGAAGAAC+CGG - chr1.1:57541313-57541332 None:intergenic 45.0%
AGACAAGTCCAAGCAGATGA+AGG + chr1.1:57545190-57545209 MS.gene062236:CDS 45.0%
AGACAATACCACTCCTGTCA+TGG - chr1.1:57542869-57542888 None:intergenic 45.0%
AGTGCGGTACTTAAGCTATG+AGG - chr1.1:57542679-57542698 None:intergenic 45.0%
ATCAAACCTGAGACCTTGAG+AGG - chr1.1:57543114-57543133 None:intergenic 45.0%
ATGATGCTGCATTGAGAGTC+GGG - chr1.1:57542593-57542612 None:intergenic 45.0%
ATGCAGAATTGCCAGGGTAA+TGG + chr1.1:57543674-57543693 MS.gene062236:CDS 45.0%
ATGCATGAGCAACAGGTTAC+AGG + chr1.1:57545419-57545438 MS.gene062236:CDS 45.0%
CAAACCAATGACCGGAAGAA+AGG - chr1.1:57545112-57545131 None:intergenic 45.0%
CAACACAAGTGTGAGTGTGT+CGG - chr1.1:57543410-57543429 None:intergenic 45.0%
CCAGCTGGAGCATAATCAAA+TGG - chr1.1:57545017-57545036 None:intergenic 45.0%
CCAGGACAGAAGTAATGGTT+CGG - chr1.1:57542799-57542818 None:intergenic 45.0%
CCATTTGATTATGCTCCAGC+TGG + chr1.1:57545014-57545033 MS.gene062236:CDS 45.0%
CCGCATCTGTAATGATAGTC+CGG + chr1.1:57544955-57544974 MS.gene062236:CDS 45.0%
CCGGACTATCATTACAGATG+CGG - chr1.1:57544958-57544977 None:intergenic 45.0%
CGATGGTGTAATGACACTTC+CGG - chr1.1:57541382-57541401 None:intergenic 45.0%
CTGCTTAGCAAACCAATGAC+CGG - chr1.1:57545120-57545139 None:intergenic 45.0%
GAACTCTCTAACAATAGGGC+TGG + chr1.1:57543978-57543997 MS.gene062236:intron 45.0%
GAAGCCGCTAAAAGAGGAAA+GGG - chr1.1:57542518-57542537 None:intergenic 45.0%
GATCATGTACCCAATTCCCA+TGG - chr1.1:57543607-57543626 None:intergenic 45.0%
GCGTTTCAATACCGACATGA+TGG + chr1.1:57545506-57545525 MS.gene062236:CDS 45.0%
GGATGGGGAGGTGATTTATT+AGG + chr1.1:57544395-57544414 MS.gene062236:intron 45.0%
GTCCTGCTTCATGCATTTGA+AGG + chr1.1:57542096-57542115 MS.gene062236:intron 45.0%
GTCTACTTCCGAGTTTGAAG+TGG - chr1.1:57541100-57541119 None:intergenic 45.0%
GTCTCAGGTTTGATTCTCTC+CGG + chr1.1:57543120-57543139 MS.gene062236:intron 45.0%
GTGATCTGTACCATGGGAAT+TGG + chr1.1:57543594-57543613 MS.gene062236:CDS 45.0%
GTGTGAGTATGTATGTGTGC+GGG - chr1.1:57543384-57543403 None:intergenic 45.0%
GTTCCATTAACTTCGGGTCA+GGG - chr1.1:57545064-57545083 None:intergenic 45.0%
GTTGTTGACCTTCATCTGCT+TGG - chr1.1:57545201-57545220 None:intergenic 45.0%
TAAAGCCCTCATCCTGTACT+CGG - chr1.1:57542200-57542219 None:intergenic 45.0%
TAGGCTGTGATCTGTACCAT+GGG + chr1.1:57543588-57543607 MS.gene062236:intron 45.0%
TCACAGCCTACACAACAGAA+TGG - chr1.1:57543578-57543597 None:intergenic 45.0%
TCACCAGATCATTATGAGGG+TGG + chr1.1:57545311-57545330 MS.gene062236:CDS 45.0%
TGAAGCCGCTAAAAGAGGAA+AGG - chr1.1:57542519-57542538 None:intergenic 45.0%
TGCAGAATTGCCAGGGTAAT+GGG + chr1.1:57543675-57543694 MS.gene062236:CDS 45.0%
TGTTCCATTAACTTCGGGTC+AGG - chr1.1:57545065-57545084 None:intergenic 45.0%
TTAGGTAAAAGAGGATGGGG+AGG + chr1.1:57544383-57544402 MS.gene062236:intron 45.0%
TTATTGACATCCTCGCTCGT+TGG - chr1.1:57541150-57541169 None:intergenic 45.0%
TTCATCTGCTTGGACTTGTC+TGG - chr1.1:57545191-57545210 None:intergenic 45.0%
TTCCATTAACTTCGGGTCAG+GGG - chr1.1:57545063-57545082 None:intergenic 45.0%
TTGTCCTTTCTTCCGGTCAT+TGG + chr1.1:57545105-57545124 MS.gene062236:CDS 45.0%
TTTCTCCGAGTACAGGATGA+GGG + chr1.1:57542192-57542211 MS.gene062236:intron 45.0%
! ACAGAAAGGGCTACCGATTA+AGG - chr1.1:57542568-57542587 None:intergenic 45.0%
! ACGTAGAAGTCGGCTCTTAA+AGG - chr1.1:57542461-57542480 None:intergenic 45.0%
! ATTCTCTCCGGTGCCAATTT+CGG + chr1.1:57543132-57543151 MS.gene062236:intron 45.0%
! CATAGCTTAAGTACCGCACT+CGG + chr1.1:57542679-57542698 MS.gene062236:intron 45.0%
! CGTAGAAGTCGGCTCTTAAA+GGG - chr1.1:57542460-57542479 None:intergenic 45.0%
! GTAGAAGTCGGCTCTTAAAG+GGG - chr1.1:57542459-57542478 None:intergenic 45.0%
! GTAGCCCTTTCCTCTTTTAG+CGG + chr1.1:57542511-57542530 MS.gene062236:intron 45.0%
! GTTCTTGTTTCATCGCCGAT+TGG + chr1.1:57540919-57540938 MS.gene062236:CDS 45.0%
! TAGAAGTCGGCTCTTAAAGG+GGG - chr1.1:57542458-57542477 None:intergenic 45.0%
! TCCAAGAAAGTGGTCTTGGA+TGG - chr1.1:57540849-57540868 None:intergenic 45.0%
! TGCTTTTGTACTTCTGGGCA+AGG + chr1.1:57542981-57543000 MS.gene062236:intron 45.0%
! TTTTAACCGCGCCATGGAAA+AGG + chr1.1:57545442-57545461 MS.gene062236:CDS 45.0%
! TTTTCTCCGAGTACAGGATG+AGG + chr1.1:57542191-57542210 MS.gene062236:intron 45.0%
!! AAAACCCACTTGAGTTGGTC+TGG + chr1.1:57543058-57543077 MS.gene062236:intron 45.0%
!! AAGCTAAAGTGGTGGATGCA+AGG - chr1.1:57542232-57542251 None:intergenic 45.0%
!! AGATAGTGGGAGGACAGTTA+TGG + chr1.1:57545162-57545181 MS.gene062236:CDS 45.0%
!! AGTTCATTCCAGGTATCGAC+AGG - chr1.1:57545635-57545654 None:intergenic 45.0%
!! CTAATGGACTGGTCTGAGTT+GGG - chr1.1:57542359-57542378 None:intergenic 45.0%
!! GGTAGAGGTACCAAAGAATC+GGG + chr1.1:57544899-57544918 MS.gene062236:intron 45.0%
!! GTAGAGGTACCAAAGAATCG+GGG + chr1.1:57544900-57544919 MS.gene062236:CDS 45.0%
!! TGCCGGTTCTTCCAATTTGA+CGG + chr1.1:57541308-57541327 MS.gene062236:CDS 45.0%
!!! TTTTTAAAAATTTGAATAAT+TGG - chr1.1:57543246-57543265 None:intergenic 5.0%
ACCACCAGACCAACTCAAGT+GGG - chr1.1:57543065-57543084 None:intergenic 50.0%
ACCAGTTCACCAAGTGCAAC+AGG - chr1.1:57545377-57545396 None:intergenic 50.0%
ACCGACATGATGGTCATCCT+GGG + chr1.1:57545516-57545535 MS.gene062236:CDS 50.0%
ACTATCGCCAAACGAAGTCG+TGG - chr1.1:57541202-57541221 None:intergenic 50.0%
ATCACTAAACGTGGCCCAGA+TGG + chr1.1:57545566-57545585 MS.gene062236:CDS 50.0%
ATCATTATGAGGGTGGAGCC+TGG + chr1.1:57545318-57545337 MS.gene062236:CDS 50.0%
CAAGCCATGAGGACCATATC+CGG - chr1.1:57544977-57544996 None:intergenic 50.0%
CAGTGTGGTACTAAGCCATG+AGG - chr1.1:57542391-57542410 None:intergenic 50.0%
CATGAGGCTCTCCAACCTAA+TGG - chr1.1:57542375-57542394 None:intergenic 50.0%
CCAAAACCCACGACTTCGTT+TGG + chr1.1:57541192-57541211 MS.gene062236:CDS 50.0%
CCAAACTAGCCCACCGAAAT+TGG - chr1.1:57543148-57543167 None:intergenic 50.0%
CCAACTCAGACCAGTCCATT+AGG + chr1.1:57542357-57542376 MS.gene062236:intron 50.0%
CCATGAAACGTGGCACCAAT+CGG - chr1.1:57540937-57540956 None:intergenic 50.0%
CCGAACCATTACTTCTGTCC+TGG + chr1.1:57542796-57542815 MS.gene062236:intron 50.0%
CGAGTGCAAACTATCCCAGA+AGG - chr1.1:57542822-57542841 None:intergenic 50.0%
CGTGGGATGTCACACTGAAA+GGG - chr1.1:57543737-57543756 None:intergenic 50.0%
CTATCGCCAAACGAAGTCGT+GGG - chr1.1:57541201-57541220 None:intergenic 50.0%
CTCAGACCAGTCCATTAGGT+TGG + chr1.1:57542361-57542380 MS.gene062236:intron 50.0%
GAAGGCCAGGACAGAAGTAA+TGG - chr1.1:57542804-57542823 None:intergenic 50.0%
GACACAGATGCAGAATTGCC+AGG + chr1.1:57543667-57543686 MS.gene062236:CDS 50.0%
GACGTGGTTGTCCTTTCTTC+CGG + chr1.1:57545098-57545117 MS.gene062236:CDS 50.0%
GCAACTGTTTCGGTTGAAGC+AGG + chr1.1:57541285-57541304 MS.gene062236:CDS 50.0%
GCTCCACCCTCATAATGATC+TGG - chr1.1:57545317-57545336 None:intergenic 50.0%
GGTTCTTCCAATTTGACGGG+TGG + chr1.1:57541312-57541331 MS.gene062236:CDS 50.0%
GTAGATAAAAGGGCCGAGTG+CGG - chr1.1:57542695-57542714 None:intergenic 50.0%
GTAGGCTGTGATCTGTACCA+TGG + chr1.1:57543587-57543606 MS.gene062236:intron 50.0%
GTCATGGAGGTTTCCTTCGA+TGG - chr1.1:57541399-57541418 None:intergenic 50.0%
GTGAGTGAAGCCGCTAAAAG+AGG - chr1.1:57542524-57542543 None:intergenic 50.0%
TACCGACATGATGGTCATCC+TGG + chr1.1:57545515-57545534 MS.gene062236:CDS 50.0%
TAGCGGCTTCACTCACCAAT+CGG + chr1.1:57542528-57542547 MS.gene062236:intron 50.0%
TAGTCCGGATATGGTCCTCA+TGG + chr1.1:57544970-57544989 MS.gene062236:CDS 50.0%
TAGTGGGAGGACAGTTATGG+TGG + chr1.1:57545165-57545184 MS.gene062236:CDS 50.0%
TATCCATGCCTGTGTGTGCA+TGG + chr1.1:57544813-57544832 MS.gene062236:intron 50.0%
TCGTGGGATGTCACACTGAA+AGG - chr1.1:57543738-57543757 None:intergenic 50.0%
TGAGAGTCGGGTCACAGAAA+GGG - chr1.1:57542581-57542600 None:intergenic 50.0%
TGATTATGCTCCAGCTGGTG+TGG + chr1.1:57545019-57545038 MS.gene062236:CDS 50.0%
TGCACACACAGGCATGGATA+TGG - chr1.1:57544813-57544832 None:intergenic 50.0%
TGCTGCATATGCACCATACC+CGG + chr1.1:57544709-57544728 MS.gene062236:intron 50.0%
TTGAGAGTCGGGTCACAGAA+AGG - chr1.1:57542582-57542601 None:intergenic 50.0%
! AAGGGGGTGATGGCAATGTT+AGG - chr1.1:57542442-57542461 None:intergenic 50.0%
! CACTCGGCCCTTTTATCTAC+TGG + chr1.1:57542695-57542714 MS.gene062236:intron 50.0%
! CCAAACGAAGTCGTGGGTTT+TGG - chr1.1:57541195-57541214 None:intergenic 50.0%
! CTGAGTTGGGCTATCCTCAT+GGG - chr1.1:57542346-57542365 None:intergenic 50.0%
! GCCGGTTCTTCCAATTTGAC+GGG + chr1.1:57541309-57541328 MS.gene062236:CDS 50.0%
! GGATAGTTTGCACTCGAGTC+TGG + chr1.1:57542826-57542845 MS.gene062236:intron 50.0%
! GGGAAGACCTTGGCTTTCAT+TGG + chr1.1:57543791-57543810 MS.gene062236:CDS 50.0%
! TACTTCTGTCCTGGCCTTCT+GGG + chr1.1:57542805-57542824 MS.gene062236:intron 50.0%
! TCTGAGTTGGGCTATCCTCA+TGG - chr1.1:57542347-57542366 None:intergenic 50.0%
! TTACTTCTGTCCTGGCCTTC+TGG + chr1.1:57542804-57542823 MS.gene062236:intron 50.0%
! TTGTAGCCTTTTCCATGGCG+CGG - chr1.1:57545451-57545470 None:intergenic 50.0%
!! AACGAAGTCGTGGGTTTTGG+TGG - chr1.1:57541192-57541211 None:intergenic 50.0%
!! AGAATTGCCAGGGTAATGGG+AGG + chr1.1:57543678-57543697 MS.gene062236:CDS 50.0%
!! CATTAGGTTGGAGAGCCTCA+TGG + chr1.1:57542373-57542392 MS.gene062236:intron 50.0%
!! CCAATTTCGGTGGGCTAGTT+TGG + chr1.1:57543145-57543164 MS.gene062236:intron 50.0%
!! CCTAATGGACTGGTCTGAGT+TGG - chr1.1:57542360-57542379 None:intergenic 50.0%
!! TACAGGTTTTAACCGCGCCA+TGG + chr1.1:57545436-57545455 MS.gene062236:CDS 50.0%
!! TTCTGGAACGGCTGTTGATG+TGG - chr1.1:57541433-57541452 None:intergenic 50.0%
!! TTGAGTTGGTCTGGTGGTGT+TGG + chr1.1:57543067-57543086 MS.gene062236:intron 50.0%
!! TTTGGGTTGGACTCTCCTCA+TGG - chr1.1:57542632-57542651 None:intergenic 50.0%
ATGGTCATCCTGGGCCTTAC+AGG + chr1.1:57545525-57545544 MS.gene062236:CDS 55.0%
CACCACCAGACCAACTCAAG+TGG - chr1.1:57543066-57543085 None:intergenic 55.0%
CACCAGTGCAAGCAATCCTG+TGG - chr1.1:57545602-57545621 None:intergenic 55.0%
CAGTGCAAGCAATCCTGTGG+CGG - chr1.1:57545599-57545618 None:intergenic 55.0%
CCTGACAACGCATCCAATGC+CGG + chr1.1:57541465-57541484 MS.gene062236:CDS 55.0%
CTAAACGTGGCCCAGATGGA+AGG + chr1.1:57545570-57545589 MS.gene062236:CDS 55.0%
GCAAACTATCCCAGAAGGCC+AGG - chr1.1:57542817-57542836 None:intergenic 55.0%
GCCCAGGATGACCATCATGT+CGG - chr1.1:57545520-57545539 None:intergenic 55.0%
GCTGATGAGAGGGAAGACCT+TGG + chr1.1:57543781-57543800 MS.gene062236:CDS 55.0%
GTTTCGGTTGAAGCAGGTGC+CGG + chr1.1:57541291-57541310 MS.gene062236:CDS 55.0%
TAGCCCACCGAAATTGGCAC+CGG - chr1.1:57543142-57543161 None:intergenic 55.0%
TCGGCTCTTAAAGGGGGTGA+TGG - chr1.1:57542452-57542471 None:intergenic 55.0%
TGCCCCTGACCCGAAGTTAA+TGG + chr1.1:57545058-57545077 MS.gene062236:CDS 55.0%
TGGAGCTTATCCACACCAGC+TGG - chr1.1:57545032-57545051 None:intergenic 55.0%
TGTGCTCCTCTCAAGGTCTC+AGG + chr1.1:57543105-57543124 MS.gene062236:intron 55.0%
TGTGGAACTTCCAACGAGCG+AGG + chr1.1:57541137-57541156 MS.gene062236:CDS 55.0%
TTTGGGTCAGGGCTCCTGTA+AGG - chr1.1:57545542-57545561 None:intergenic 55.0%
! GCCTGTTGCACTTGGTGAAC+TGG + chr1.1:57545373-57545392 MS.gene062236:CDS 55.0%
! GGCTCTCCAACCTAATGGAC+TGG - chr1.1:57542370-57542389 None:intergenic 55.0%
! TCTCCGGTGCCAATTTCGGT+GGG + chr1.1:57543136-57543155 MS.gene062236:intron 55.0%
!! ACCCACTTGAGTTGGTCTGG+TGG + chr1.1:57543061-57543080 MS.gene062236:intron 55.0%
!! CCGATTGGTGCCACGTTTCA+TGG + chr1.1:57540934-57540953 MS.gene062236:CDS 55.0%
!! CTCTATCGGCACTGACCCAA+TGG + chr1.1:57542489-57542508 MS.gene062236:intron 55.0%
!! TGGTCTGGTGGTGTTGGCTT+GGG + chr1.1:57543073-57543092 MS.gene062236:intron 55.0%
!! TTCCAGGTATCGACAGGACC+TGG - chr1.1:57545629-57545648 None:intergenic 55.0%
!! TTGGTCTGGTGGTGTTGGCT+TGG + chr1.1:57543072-57543091 MS.gene062236:intron 55.0%
AACACCGGTGGGTCATGCAC+TGG + chr1.1:57545341-57545360 MS.gene062236:CDS 60.0%
ACACCGGTGGGTCATGCACT+GGG + chr1.1:57545342-57545361 MS.gene062236:CDS 60.0%
CGCCACAGGATTGCTTGCAC+TGG + chr1.1:57545597-57545616 MS.gene062236:CDS 60.0%
CTCGGAGTGTGCTCCTCTCA+AGG + chr1.1:57543098-57543117 MS.gene062236:intron 60.0%
CTTCCCAGTGCATGACCCAC+CGG - chr1.1:57545348-57545367 None:intergenic 60.0%
TGCAAGCAATCCTGTGGCGG+TGG - chr1.1:57545596-57545615 None:intergenic 60.0%
TGCCAGGTCCTGTCGATACC+TGG + chr1.1:57545624-57545643 MS.gene062236:CDS 60.0%
TGTCAGGCCTCCCATTACCC+TGG - chr1.1:57543688-57543707 None:intergenic 60.0%
! CCGGCATTGGATGCGTTGTC+AGG - chr1.1:57541468-57541487 None:intergenic 60.0%
! CTCTCCGGTGCCAATTTCGG+TGG + chr1.1:57543135-57543154 MS.gene062236:intron 60.0%
! CTTGAGAGGAGCACACTCCG+AGG - chr1.1:57543100-57543119 None:intergenic 60.0%
! TGCTTGCACTGGTGCATGCC+AGG + chr1.1:57545608-57545627 MS.gene062236:CDS 60.0%
!! GTGGTGTTGGCTTGGGACCT+CGG + chr1.1:57543080-57543099 MS.gene062236:intron 60.0%
!! TCGGGTCAGGGGCATCAAGA+TGG - chr1.1:57545052-57545071 None:intergenic 60.0%
AGATGGAAGGCCACCGCCAC+AGG + chr1.1:57545583-57545602 MS.gene062236:CDS 65.0%
CGGTGGGTCATGCACTGGGA+AGG + chr1.1:57545346-57545365 MS.gene062236:CDS 65.0%
GAGGGTGGAGCCTGGAACAC+CGG + chr1.1:57545326-57545345 MS.gene062236:CDS 65.0%
GCATGACCCACCGGTGTTCC+AGG - chr1.1:57545339-57545358 None:intergenic 65.0%
GTGGAGCCTGGAACACCGGT+GGG + chr1.1:57545330-57545349 MS.gene062236:CDS 65.0%
GTGGCGGTGGCCTTCCATCT+GGG - chr1.1:57545583-57545602 None:intergenic 65.0%
TCAGGGCTCCTGTAAGGCCC+AGG - chr1.1:57545536-57545555 None:intergenic 65.0%
TGTGGCGGTGGCCTTCCATC+TGG - chr1.1:57545584-57545603 None:intergenic 65.0%
GGTGGAGCCTGGAACACCGG+TGG + chr1.1:57545329-57545348 MS.gene062236:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 57540838 57545703 57540838 ID=MS.gene062236
chr1.1 mRNA 57540838 57545703 57540838 ID=MS.gene062236.t1;Parent=MS.gene062236
chr1.1 exon 57540838 57541501 57540838 ID=MS.gene062236.t1.exon1;Parent=MS.gene062236.t1
chr1.1 CDS 57540838 57541501 57540838 ID=cds.MS.gene062236.t1;Parent=MS.gene062236.t1
chr1.1 exon 57543591 57543865 57543591 ID=MS.gene062236.t1.exon2;Parent=MS.gene062236.t1
chr1.1 CDS 57543591 57543865 57543591 ID=cds.MS.gene062236.t1;Parent=MS.gene062236.t1
chr1.1 exon 57544900 57545703 57544900 ID=MS.gene062236.t1.exon3;Parent=MS.gene062236.t1
chr1.1 CDS 57544900 57545703 57544900 ID=cds.MS.gene062236.t1;Parent=MS.gene062236.t1
Gene Sequence

>MS.gene062236

ATGTCTTACCATCCAAGACCACTTTCTTGGATTGTTGTTTTAGTAGGAGCACTTGCAATTTTCTTAATCTATGCTTCATTTGTTCTTGTTTCATCGCCGATTGGTGCCACGTTTCATGGATATTTTTATGGTATAGGTAGTTCTGAGAAGTTAGATGTATCTGGATCTCCTATAAATGTTGCTTCTATTGATAATAAACCGTCTTTAGATTCACAATCTTCCACTGGTACTAGTGATAGCAATGTAGAAAAAACCGATACCACTTCAAACTCGGAAGTAGACAATAGTAAGTCTAGTTCTGTGGAACTTCCAACGAGCGAGGATGTCAATAAAACTTCTGATGTGAAACTTCCACCAAAACCCACGACTTCGTTTGGCGATAGTGTAGATACGGCCAATACTAGTTTGCCTGCTCAAGCAAATTCACAAGTTGATTCAACTTCAAGTGCAACTGTTTCGGTTGAAGCAGGTGCCGGTTCTTCCAATTTGACGGGTGGTATTAGAACTGAAGAACCCCCTTCTACGGTTTCAAATGATCAGTCCGGAAGTGTCATTACACCATCGAAGGAAACCTCCATGACTTCTGATAATTCCACATCAACAGCCGTTCCAGAATCAGTAAAGAAGCCTGACAACGCATCCAATGCCGGTTCAGTTAATTCAGGTTACTGTTGCAATCTTTCACCTACACTAGCTTGTTTTTTAAATGCTTCATGGTATAATATTTACCATTCTTGTTTTGTACTACTATAATATACAATAACATAAAATTGTCTGTTTTTCTTTACTTCACTCTCTTTTGGAAGCACATTGTGTTTAGTAAAATAGTCTCATTTTATTAATCTTAACTCACTACTTGTTATATCCTAGAGAAACTGAAATGAACAGAAGATAGAAAAAAATCAAGAGAATAGAAGTGTATTATTGCAAACTGAACTGGAATTGTAGAATGTAATTCAACCCAAGAGTTTTCCCTTTGTAAAGGATATGTCTTTTCACTTTCCATGTACAACTATCAAATTGACATCTCCTCCTTTCCATTCCCATATTCTCTTTTTAATTTTTATAACTCATTCTAACTATTACTACTAAATTTACAATTTTATTCTACCCCAACATTACTATTTTATCTAACTTCAAACTGTGATTAAGATTTAACCACCTAACAAAAAAACACTCATAGCTATTTGTCTAGTTAATGTATTACATGAAAAGTCTGAGGGAGGGATATATTTCGTCTTTAAACATGCATACATATGTCCTGCTTCATGCATTTGAAGGATTCAGGTTGAGAGGGAGATTTTTTTTCTTACAGTAGACACTAATATAGCAAAGAGATGATGTTGTCTATATTTTTCTCCGAGTACAGGATGAGGGCTTTAATGAGATTTCCTTGCATCCACCACTTTAGCTTGTTTTTAGCACAATTGTCGAGTAACCTCTATTTTATTTTGGTCTTTGTTTCAGTTATCAATTGGGCTAATTAAGTGGTTGTTAGACTTAAGCCCATGAGGATAGCCCAACTCAGACCAGTCCATTAGGTTGGAGAGCCTCATGGCTTAGTACCACACTGAGCACTTTTATCTAGTTTATGTGGGACTCCTAACATTGCCATCACCCCCTTTAAGAGCCGACTTCTACGTCAGTTTCACTCTATCGGCACTGACCCAATGGTAGCCCTTTCCTCTTTTAGCGGCTTCACTCACCAATCGGTATTTAGTTGAGTACCTTAATCGGTAGCCCTTTCTGTGACCCGACTCTCAATGCAGCATCATTTATTAGGACTTAAGTCCATGAGGAGAGTCCAACCCAAAAGACTAGTTTATTAAGTGGGAGAGCCTCATAGCTTAAGTACCGCACTCGGCCCTTTTATCTACTGGAATTTTGGCGTGTTTGTTTGGTAGGGTATCTGTTTGTTAACTCTCTAAATCATCAGAATTTTTTTTTTCTTTTTTCTTCCGAACCATTACTTCTGTCCTGGCCTTCTGGGATAGTTTGCACTCGAGTCTGGTGACTCTCTAATAATCACCATGACAGGAGTGGTATTGTCTTGATGATGTTTGGTTGTTCACTGTTCCTTGTTTGTTGTTGCTAAGCACATAATTGAGTTGTTAATTAGCAACTGAATCAACGGATTTAATTTTGCTTTTGTACTTCTGGGCAAGGATCTGAATTTCATTGTCAACAACACTAAATCGCTTATAAAGAATTGTAACAGAAAAAACCCACTTGAGTTGGTCTGGTGGTGTTGGCTTGGGACCTCGGAGTGTGCTCCTCTCAAGGTCTCAGGTTTGATTCTCTCCGGTGCCAATTTCGGTGGGCTAGTTTGGCTTATTCTAAAAAAAAAATTGTAACAGAAATATTTCGTTGTAGTATATACAAAATGAATAAATTGAAACATGAAACCAATTATTCAAATTTTTAAAAAGTTGAATTCACAGTAGTTTCAGGTGTATGGATTACTGACTGCAAATATGATGTATAATTCAAAGTTTTGGTTGGCAGATATGACACAGCCTCACATATACATGCACTCACACGAGCCCGCACACATACATACTCACACTCACCGACACACTCACACTTGTGTTGCTATATATGTTTGGAAAATTCTCAAACATATGTAAATTATTAGTAGCGGTATCTTGTTACTAAAAATTTCTTATTGTAAACAGGTGACGGTTTTATAATAATATTGTTTGAAATTACTCTGTGTGAGGCTTTTAATTGGTATTGTCCATTCTGTTGTGTAGGCTGTGATCTGTACCATGGGAATTGGGTACATGATCCATTGGGACCACTTTACACAAACAATACATGTCCTGTATTGACACAGATGCAGAATTGCCAGGGTAATGGGAGGCCTGACAAAGATTATGAGAATTGGCGATGGAAGCCCTTTCAGTGTGACATCCCACGATTTGATCCTAGGAAATTTTTGGAGCTGATGAGAGGGAAGACCTTGGCTTTCATTGGAGATTCAGTAGCTCGAAACCAAATGGAATCAATGTTGTGTATTCTGTGGCAGGTTATTTCTTTATTTTATTCCTTATTGATCTGTTTTGCATGGAAAATAAAATGATTTAGAGATTATAGAAATATTATCAGTTTTATTGTTGCTGCATATTGTTTGTGATTATGAACTCTCTAACAATAGGGCTGGAAATATTTGAACTTTGATTTTGACTAGTTAAGATGTAAGAGATTGTTTGTAAGTTTTATCCGAGACACGCATAATCGAATCATTTACAGTTTGCTTTGTTTGGTAGTAAATTAGTCCAATAAAGTAAATTCACATCTCAACAGAAACACTTCAACATGATAATGCTTTCAACCTGTTTGTATTTTATATTTGTTTGGTTTGGCGTCATCTAAATAAATAGAGTTACTCTTATTATTATTGTATTATGGATGCTTAATTTATTAACATTTATATGAGAACCATAAATGTTAATAAAAAGAAAAATTGTTTTGCTTTGAAACAATTTCTGCAACATGTGGATTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAGGTAAAAGAGGATGGGGAGGTGATTTATTAGGTAAACCAGGAAGTAAATGAGAGTGAAATCAGGAAACAAATTGATATGCATCCAGTACAACAATTTCTGCATTTATAATCTAGTTTCTCATATAAACATTTCTTTATTAGGTAAAAGAGGAACGCAATCAAATTGATTTGGCGAGAAACTAAGTATATTTTTCTCAACATTTCTTTTCTTAGTTTTGCTTTGAAATTTTATGCCTTTCCCAGCCAAAGTATATTCCAATAAAAAGAAAAATGCATGTTTTGCCACTTGGCACTGCATCAAAAATTGTTTTATGTGGCTTTAATGCTGCATATGCACCATACCCGGTTCATAATGAAATGGTTTTTAGCCATTCAGCAGCATGCATTTGATTGCAAGTATTCATTTACACATACATAGGGTTTTCCATATCCATGCCTGTGTGTGCATGGTGCATGTGATTAAGCATCCATTTTATCATAGCTAGAAGCTTAACTGAAAATATGGTATTTTCAGGTAGAGGTACCAAAGAATCGGGGAAATCGTAATATGCAACGATATTATTTTAGGTCCGCATCTGTAATGATAGTCCGGATATGGTCCTCATGGCTTGTTAAAGTGACTTCTGAACCATTTGATTATGCTCCAGCTGGTGTGGATAAGCTCCATCTTGATGCCCCTGACCCGAAGTTAATGGAACATATCCCAAATTTTGACGTGGTTGTCCTTTCTTCCGGTCATTGGTTTGCTAAGCAGTCTGTGTATATCTTGAATAACGAGATAGTGGGAGGACAGTTATGGTGGCCAGACAAGTCCAAGCAGATGAAGGTCAACAACATTCAAGCATATGCTATATCTGTAGAAACAATTCTTACTGCTCTTGCTACACATCCAACTTACAAAGGTCTCGCAATTGTTCGGTCCTATTCACCAGATCATTATGAGGGTGGAGCCTGGAACACCGGTGGGTCATGCACTGGGAAGGTTAAGCCTGTTGCACTTGGTGAACTGGTAGAAAACGGGCACACAAATACGATGCATGAGCAACAGGTTACAGGTTTTAACCGCGCCATGGAAAAGGCTACAAATAAATCGAAGTTGAGGTTAATGGACATTACTCAAGCGTTTCAATACCGACATGATGGTCATCCTGGGCCTTACAGGAGCCCTGACCCAAATAAGATCACTAAACGTGGCCCAGATGGAAGGCCACCGCCACAGGATTGCTTGCACTGGTGCATGCCAGGTCCTGTCGATACCTGGAATGAACTTGTCTTGGAAATCATCAAGAGAGAATATGAAGGTGGAAGTGCATCATGA
Protein sequence

>MS.gene062236.t1

MSYHPRPLSWIVVLVGALAIFLIYASFVLVSSPIGATFHGYFYGIGSSEKLDVSGSPINVASIDNKPSLDSQSSTGTSDSNVEKTDTTSNSEVDNSKSSSVELPTSEDVNKTSDVKLPPKPTTSFGDSVDTANTSLPAQANSQVDSTSSATVSVEAGAGSSNLTGGIRTEEPPSTVSNDQSGSVITPSKETSMTSDNSTSTAVPESVKKPDNASNAGSVNSGCDLYHGNWVHDPLGPLYTNNTCPVLTQMQNCQGNGRPDKDYENWRWKPFQCDIPRFDPRKFLELMRGKTLAFIGDSVARNQMESMLCILWQVEVPKNRGNRNMQRYYFRSASVMIVRIWSSWLVKVTSEPFDYAPAGVDKLHLDAPDPKLMEHIPNFDVVVLSSGHWFAKQSVYILNNEIVGGQLWWPDKSKQMKVNNIQAYAISVETILTALATHPTYKGLAIVRSYSPDHYEGGAWNTGGSCTGKVKPVALGELVENGHTNTMHEQQVTGFNRAMEKATNKSKLRLMDITQAFQYRHDGHPGPYRSPDPNKITKRGPDGRPPPQDCLHWCMPGPVDTWNELVLEIIKREYEGGSAS