AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85099

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85099.t1 MTR_6g061710 94.084 524 31 0 1 524 1 524 0.0 1039
MS.gene85099.t1 MTR_1g076690 60.172 580 161 7 14 524 2 580 0.0 694
MS.gene85099.t1 MTR_6g016880 34.243 403 241 9 121 517 38 422 4.46e-77 249
MS.gene85099.t1 MTR_7g019120 34.877 367 221 7 157 517 69 423 2.64e-75 244
MS.gene85099.t1 MTR_8g099300 33.898 354 220 8 167 514 74 419 1.90e-73 239
MS.gene85099.t1 MTR_6g016875 32.723 382 232 8 145 515 42 409 5.17e-71 233
MS.gene85099.t1 MTR_6g007777 31.818 418 255 9 107 517 66 460 1.40e-70 233
MS.gene85099.t1 MTR_8g027900 33.943 383 240 8 137 514 181 555 1.23e-69 233
MS.gene85099.t1 MTR_5g035090 34.903 361 210 10 167 516 83 429 3.67e-67 223
MS.gene85099.t1 MTR_3g109840 35.294 357 214 9 166 516 72 417 6.24e-66 219
MS.gene85099.t1 MTR_2g016060 34.783 368 200 13 168 516 56 402 3.01e-64 214
MS.gene85099.t1 MTR_7g033230 35.150 367 210 11 163 516 260 611 5.14e-64 219
MS.gene85099.t1 MTR_5g035080 33.795 361 215 10 167 516 75 422 1.64e-63 213
MS.gene85099.t1 MTR_7g033230 35.150 367 210 11 163 516 330 681 1.70e-63 219
MS.gene85099.t1 MTR_5g035150 32.708 373 208 12 165 516 83 433 1.35e-62 211
MS.gene85099.t1 MTR_8g104970 34.734 357 219 10 165 515 118 466 6.49e-62 211
MS.gene85099.t1 MTR_5g035070 34.626 361 213 10 167 516 87 435 5.18e-58 199
MS.gene85099.t1 MTR_7g109550 30.538 465 253 18 72 511 45 464 7.32e-53 186
MS.gene85099.t1 MTR_7g093450 28.858 499 295 16 59 519 117 593 3.15e-52 187
MS.gene85099.t1 MTR_4g126950 29.428 367 217 8 164 514 106 446 6.26e-51 181
MS.gene85099.t1 MTR_0136s0010 30.159 378 224 12 148 511 155 506 1.95e-50 181
MS.gene85099.t1 MTR_7g094750 30.601 366 218 8 167 517 91 435 2.86e-50 179
MS.gene85099.t1 MTR_5g033800 29.494 356 220 9 167 511 145 480 5.46e-50 179
MS.gene85099.t1 MTR_5g059400 28.989 376 228 10 159 516 167 521 1.47e-47 173
MS.gene85099.t1 MTR_1g116130 28.989 376 228 10 159 516 167 521 1.47e-47 173
MS.gene85099.t1 MTR_8g069790 29.752 363 220 11 162 511 173 513 1.79e-47 173
MS.gene85099.t1 MTR_4g125060 31.771 384 196 16 160 514 164 510 6.73e-47 171
MS.gene85099.t1 MTR_8g463790 29.024 379 218 12 163 520 67 415 7.74e-47 169
MS.gene85099.t1 MTR_4g125060 30.269 446 233 18 101 514 72 471 9.63e-47 169
MS.gene85099.t1 MTR_4g125060 31.771 384 196 16 160 514 193 539 1.66e-46 170
MS.gene85099.t1 MTR_1g112210 31.063 367 200 12 152 510 44 365 2.55e-45 163
MS.gene85099.t1 MTR_4g121560 27.765 425 269 12 108 514 49 453 2.65e-45 166
MS.gene85099.t1 MTR_8g093870 29.858 422 213 19 122 514 105 472 1.07e-44 164
MS.gene85099.t1 MTR_2g022560 30.137 365 216 9 166 514 96 437 1.37e-44 163
MS.gene85099.t1 MTR_1g112210 30.270 370 212 11 152 510 44 378 1.71e-44 161
MS.gene85099.t1 MTR_5g071350 28.457 376 230 12 151 511 45 396 9.45e-42 154
MS.gene85099.t1 MTR_3g090120 28.947 380 205 12 166 521 128 466 1.45e-41 155
MS.gene85099.t1 MTR_1g050448 30.811 370 217 13 152 514 38 375 1.74e-40 150
MS.gene85099.t1 MTR_1g058380 28.462 390 213 13 164 524 52 404 3.22e-40 150
MS.gene85099.t1 MTR_3g049330 29.745 353 206 11 166 511 30 347 1.62e-38 144
MS.gene85099.t1 MTR_4g014440 25.610 410 276 12 118 514 14 407 2.18e-38 145
MS.gene85099.t1 MTR_3g464570 27.926 376 222 13 155 514 34 376 8.10e-38 143
MS.gene85099.t1 MTR_3g070900 28.492 358 236 9 165 514 104 449 8.28e-38 144
MS.gene85099.t1 MTR_2g015720 29.412 374 203 12 156 514 31 358 9.47e-38 142
MS.gene85099.t1 MTR_3g071650 28.371 356 227 14 167 511 89 427 2.61e-37 143
MS.gene85099.t1 MTR_8g093530 26.344 372 229 10 160 519 83 421 6.82e-37 142
MS.gene85099.t1 MTR_2g091175 29.545 352 201 12 167 510 50 362 1.01e-36 140
MS.gene85099.t1 MTR_5g083260 28.011 357 231 14 165 511 81 421 1.24e-36 141
MS.gene85099.t1 MTR_4g016940 26.685 356 239 10 167 514 86 427 2.31e-36 140
MS.gene85099.t1 MTR_1g111010 28.883 367 185 13 167 514 32 341 7.57e-36 137
MS.gene85099.t1 MTR_4g014430 27.297 370 220 14 165 514 106 446 9.69e-36 139
MS.gene85099.t1 MTR_3g021060 28.889 360 202 12 167 514 46 363 1.83e-35 136
MS.gene85099.t1 MTR_4g079700 27.322 366 211 11 161 514 41 363 1.96e-35 136
MS.gene85099.t1 MTR_7g070060 27.171 357 240 10 167 514 64 409 2.50e-35 137
MS.gene85099.t1 MTR_3g035830 26.975 367 204 12 165 514 29 348 7.03e-35 134
MS.gene85099.t1 MTR_4g092830 26.471 374 220 14 167 514 48 392 1.26e-34 135
MS.gene85099.t1 MTR_2g073510 27.147 361 210 14 167 514 33 353 3.23e-34 132
MS.gene85099.t1 MTR_4g088030 28.767 365 188 13 167 510 33 346 4.49e-34 132
MS.gene85099.t1 MTR_7g019140 50.485 103 51 0 157 259 69 171 1.54e-33 125
MS.gene85099.t1 MTR_7g068920 25.243 412 262 14 125 514 34 421 3.17e-33 131
MS.gene85099.t1 MTR_2g073500 29.032 372 195 14 162 514 24 345 6.82e-33 129
MS.gene85099.t1 MTR_5g034810 27.019 359 218 12 160 511 28 349 8.96e-33 129
MS.gene85099.t1 MTR_3g021090 26.685 356 211 9 165 510 29 344 1.30e-32 129
MS.gene85099.t1 MTR_5g082880 26.146 371 231 10 165 514 163 511 7.26e-32 129
MS.gene85099.t1 MTR_4g087730 28.329 353 211 14 164 510 42 358 1.43e-31 125
MS.gene85099.t1 MTR_7g094750 30.894 246 150 5 167 400 91 328 1.57e-30 122
MS.gene85099.t1 MTR_5g035120 50.549 91 45 0 165 255 73 163 6.10e-29 112
MS.gene85099.t1 MTR_5g035140 31.102 254 158 9 271 517 25 268 8.85e-29 115
MS.gene85099.t1 MTR_6g016240 24.665 373 239 11 160 512 64 414 9.63e-29 118
MS.gene85099.t1 MTR_5g033800 33.702 181 107 4 167 337 145 322 1.56e-28 117
MS.gene85099.t1 MTR_7g070060 36.296 135 80 2 167 295 64 198 8.83e-24 102
MS.gene85099.t1 MTR_3g464570 25.333 300 178 12 231 514 3 272 4.36e-17 82.0
MS.gene85099.t1 MTR_7g070060 23.684 304 213 9 219 514 15 307 3.14e-15 77.0
MS.gene85099.t1 MTR_0929s0010 48.276 58 30 0 157 214 69 126 1.65e-14 70.9
MS.gene85099.t1 MTR_7g019130 28.125 128 85 3 281 405 1 124 5.31e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85099.t1 AT5G51640 58.065 527 180 8 8 524 3 498 0.0 608
MS.gene85099.t1 AT4G25360 56.977 516 201 6 17 517 18 527 0.0 602
MS.gene85099.t1 AT4G25360 56.977 516 201 6 17 517 18 527 0.0 602
MS.gene85099.t1 AT1G01430 34.889 407 250 11 117 514 47 447 4.81e-79 255
MS.gene85099.t1 AT4G23790 35.933 359 215 8 164 514 76 427 4.03e-78 252
MS.gene85099.t1 AT4G11090 35.062 405 233 14 119 514 42 425 4.08e-75 244
MS.gene85099.t1 AT5G15900 35.097 359 212 9 167 517 67 412 2.66e-74 242
MS.gene85099.t1 AT5G15900 35.097 359 212 9 167 517 86 431 4.49e-74 242
MS.gene85099.t1 AT1G70230 38.187 364 182 11 167 516 79 413 5.09e-74 241
MS.gene85099.t1 AT4G01080 36.198 384 228 8 140 519 66 436 1.57e-72 238
MS.gene85099.t1 AT5G15890 32.110 436 254 11 105 517 109 525 3.82e-71 236
MS.gene85099.t1 AT3G02440 32.676 355 221 7 167 515 127 469 2.22e-70 233
MS.gene85099.t1 AT3G02440 32.676 355 221 7 167 515 135 477 2.44e-70 233
MS.gene85099.t1 AT3G28150 33.146 356 219 7 167 516 70 412 4.73e-66 220
MS.gene85099.t1 AT5G20590 32.787 366 201 11 164 511 138 476 9.54e-56 194
MS.gene85099.t1 AT5G49340 28.836 378 227 10 155 514 88 441 8.57e-51 180
MS.gene85099.t1 AT1G60790 30.939 362 211 11 167 511 190 529 1.43e-50 182
MS.gene85099.t1 AT3G62390 28.764 445 262 14 93 511 53 468 1.63e-49 177
MS.gene85099.t1 AT3G12060 27.477 444 278 11 81 511 120 532 1.02e-47 174
MS.gene85099.t1 AT5G06700 29.700 367 225 11 161 514 249 595 3.62e-47 173
MS.gene85099.t1 AT3G06080 29.679 374 214 11 166 517 102 448 1.70e-46 169
MS.gene85099.t1 AT1G73140 30.189 371 216 10 165 518 65 409 2.78e-46 167
MS.gene85099.t1 AT5G19160 28.836 378 220 11 166 520 98 449 1.43e-45 166
MS.gene85099.t1 AT5G64470 28.493 365 219 11 167 514 55 394 1.30e-44 162
MS.gene85099.t1 AT5G64470 28.763 372 215 13 167 514 55 400 1.07e-43 160
MS.gene85099.t1 AT5G20680 29.208 404 230 13 139 514 82 457 1.97e-43 160
MS.gene85099.t1 AT5G20680 29.208 404 230 13 139 514 158 533 4.40e-43 161
MS.gene85099.t1 AT5G20680 29.208 404 230 13 139 514 176 551 4.58e-43 161
MS.gene85099.t1 AT5G20680 29.208 404 230 13 139 514 176 551 4.58e-43 161
MS.gene85099.t1 AT5G20680 29.208 404 230 13 139 514 176 551 4.58e-43 161
MS.gene85099.t1 AT5G20680 29.208 404 230 13 139 514 176 551 4.58e-43 161
MS.gene85099.t1 AT5G64020 31.300 377 205 15 167 514 57 408 6.27e-42 155
MS.gene85099.t1 AT5G06230 28.212 397 219 10 147 511 40 402 7.36e-42 155
MS.gene85099.t1 AT5G06230 27.792 385 214 9 157 511 11 361 8.33e-42 154
MS.gene85099.t1 AT2G30900 29.494 356 208 11 165 511 41 362 3.54e-40 149
MS.gene85099.t1 AT2G31110 30.108 372 200 12 156 511 32 359 4.97e-40 149
MS.gene85099.t1 AT3G14850 29.692 357 210 11 165 514 32 354 8.50e-40 148
MS.gene85099.t1 AT2G14530 28.426 394 241 13 140 514 35 406 9.21e-40 149
MS.gene85099.t1 AT2G30010 29.620 368 212 11 167 514 56 396 1.07e-39 149
MS.gene85099.t1 AT2G30010 29.620 368 212 11 167 514 99 439 2.33e-39 149
MS.gene85099.t1 AT2G40160 27.855 359 234 9 164 510 74 419 8.41e-39 147
MS.gene85099.t1 AT2G40160 27.855 359 234 9 164 510 74 419 1.05e-38 147
MS.gene85099.t1 AT1G29050 28.000 375 208 11 156 514 50 378 1.02e-37 143
MS.gene85099.t1 AT2G34070 27.809 356 214 9 166 514 64 383 2.24e-37 142
MS.gene85099.t1 AT3G54260 30.220 364 198 14 167 514 51 374 2.48e-37 142
MS.gene85099.t1 AT5G01360 25.989 354 239 10 167 511 36 375 6.42e-37 140
MS.gene85099.t1 AT2G40150 28.150 373 227 11 167 517 71 424 1.16e-36 141
MS.gene85099.t1 AT5G01360 26.062 353 240 10 167 511 92 431 1.31e-36 141
MS.gene85099.t1 AT5G01620 28.283 396 238 18 137 514 82 449 5.23e-36 139
MS.gene85099.t1 AT5G01620 28.283 396 238 18 137 514 82 449 5.23e-36 139
MS.gene85099.t1 AT3G11570 28.571 350 198 12 183 511 98 416 6.08e-36 139
MS.gene85099.t1 AT5G01620 28.392 398 235 18 137 514 90 457 6.27e-36 139
MS.gene85099.t1 AT1G48880 27.346 373 220 12 160 517 106 442 7.73e-36 139
MS.gene85099.t1 AT3G11030 26.685 356 238 11 165 511 104 445 1.13e-35 139
MS.gene85099.t1 AT2G42570 28.652 356 208 12 167 514 47 364 6.19e-35 135
MS.gene85099.t1 AT3G55990 25.968 439 279 12 95 516 77 486 1.10e-34 136
MS.gene85099.t1 AT2G40320 26.536 358 235 14 165 511 79 419 4.25e-34 134
MS.gene85099.t1 AT5G58600 26.776 366 219 10 167 514 66 400 1.32e-33 132
MS.gene85099.t1 AT2G37720 27.321 377 208 14 164 511 140 479 1.64e-33 133
MS.gene85099.t1 AT2G38320 27.807 374 220 17 165 514 57 404 3.64e-33 131
MS.gene85099.t1 AT1G78710 28.375 363 201 15 167 514 38 356 1.59e-32 128
MS.gene85099.t1 AT5G20590 31.621 253 145 7 164 400 138 378 8.96e-31 123
MS.gene85099.t1 AT3G62390 52.000 100 47 1 164 262 135 234 2.55e-30 123
MS.gene85099.t1 AT5G64470 28.352 261 159 8 167 410 55 304 5.56e-29 117
MS.gene85099.t1 AT5G64470 28.352 261 159 8 167 410 55 304 7.00e-29 117
MS.gene85099.t1 AT2G31110 34.574 188 110 5 156 338 32 211 1.02e-26 109
MS.gene85099.t1 AT5G19160 27.459 244 161 4 166 399 98 335 1.05e-26 111
MS.gene85099.t1 AT3G06080 28.175 252 151 7 166 400 102 340 1.11e-26 111
MS.gene85099.t1 AT2G30900 34.857 175 101 5 165 334 41 207 3.60e-26 108
MS.gene85099.t1 AT2G38320 27.988 343 194 17 197 514 7 321 6.98e-26 108
MS.gene85099.t1 AT2G40160 31.551 187 123 3 164 345 74 260 7.01e-26 108
MS.gene85099.t1 AT5G06230 26.855 283 165 7 147 402 40 307 2.57e-21 95.1
MS.gene85099.t1 AT1G78710 42.373 118 61 4 141 255 5 118 4.19e-21 94.4
MS.gene85099.t1 AT5G58600 43.333 90 50 1 167 255 66 155 2.27e-20 92.0
MS.gene85099.t1 AT3G14850 26.690 281 165 11 238 511 2 248 2.18e-13 70.9

Find 135 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCATTGGAATGGGTTCTTT+TGG 0.279081 6.1:-56271051 None:intergenic
ACCTTTCATAATTGAGGAAT+TGG 0.286895 6.1:-56271079 None:intergenic
TTAGGATCAGTGCTCCTATA+TGG 0.296985 6.1:-56272340 None:intergenic
TTCTGTGTCTGCGTCAATAT+AGG 0.300190 6.1:-56271352 None:intergenic
ATGTATGAGCAACAGGTTAC+AGG 0.306715 6.1:+56272220 MS.gene85099:CDS
CCTATTGGTTCAACTGTTCA+TGG 0.321255 6.1:+56270736 MS.gene85099:CDS
GGCAAGACATTGGCTTTCAT+TGG 0.338972 6.1:+56271484 MS.gene85099:CDS
GTAGAGAGTTCACAAACTTC+TGG 0.339283 6.1:+56270772 MS.gene85099:CDS
GTGATCTGTACCATGGAAAT+TGG 0.343434 6.1:+56271287 MS.gene85099:CDS
CAAATCCGAAACCACTTTCT+CGG 0.344080 6.1:+56270647 MS.gene85099:CDS
GCACTCACCTCCTTAGTTAC+TGG 0.356224 6.1:-56271006 None:intergenic
TTGTTCTATCATCTGGTCAT+TGG 0.361018 6.1:+56271906 MS.gene85099:CDS
GGTAGAGGAACCGAAGAATC+AGG 0.362906 6.1:+56271700 MS.gene85099:intron
ACTGTTCATGGTTATTTCAA+TGG 0.363276 6.1:+56270748 MS.gene85099:CDS
CGCTTCGATGTATGAGCAAC+AGG 0.367684 6.1:+56272213 MS.gene85099:CDS
CAGTTCTCATAATCCTTATC+AGG 0.368015 6.1:-56271394 None:intergenic
CCATGAACAGTTGAACCAAT+AGG 0.375978 6.1:-56270736 None:intergenic
CTGTAACGATTGTTCGGATA+TGG 0.377456 6.1:+56271762 MS.gene85099:CDS
TTTCGGATTTGAAGAACCTT+TGG 0.380304 6.1:-56270635 None:intergenic
TTGCGAGTTCCCTGATTCTT+CGG 0.390789 6.1:-56271710 None:intergenic
AACATTACCTTTCATAATTG+AGG 0.395469 6.1:-56271085 None:intergenic
GGGTACTTGCAAATTTGAAT+TGG 0.397124 6.1:-56270953 None:intergenic
ATAATCCGAGAAAGTGGTTT+CGG 0.398592 6.1:-56270652 None:intergenic
AGCCGAATCAGAAGTTTCTA+AGG 0.404120 6.1:-56271028 None:intergenic
ATTGTAAGTCCGGTATAATT+CGG 0.405960 6.1:-56272076 None:intergenic
AATTCCATGAACATCTCATC+AGG 0.417225 6.1:-56271863 None:intergenic
TGCCTTAGAAACTTCTGATT+CGG 0.420347 6.1:+56271026 MS.gene85099:CDS
CATGAACAGTTGAACCAATA+GGG 0.420888 6.1:-56270735 None:intergenic
TTCGGATTTGAAGAACCTTT+GGG 0.424140 6.1:-56270634 None:intergenic
TGCTTACACTGGTGCATGCC+GGG 0.424835 6.1:+56272409 MS.gene85099:CDS
CTATTCACCCGATCATTATG+AGG 0.425666 6.1:+56272108 MS.gene85099:CDS
TCTGTGTCTGCGTCAATATA+GGG 0.428137 6.1:-56271351 None:intergenic
CTCATAATGATCGGGTGAAT+AGG 0.435508 6.1:-56272107 None:intergenic
ATCCCCTGATGAGATGTTCA+TGG 0.437117 6.1:+56271859 MS.gene85099:CDS
TGCCGGGACCTGTGGATACT+TGG 0.440314 6.1:+56272425 MS.gene85099:CDS
ATCAACAGCATCGAAGCATT+TGG 0.448769 6.1:+56272013 MS.gene85099:CDS
GATGTGGTTGTTCTATCATC+TGG 0.451786 6.1:+56271899 MS.gene85099:CDS
AGTCCATGATGTGTATTCTT+TGG 0.459251 6.1:+56271533 MS.gene85099:CDS
AACACCGGTGGGTCATGCAC+TGG 0.459666 6.1:+56272142 MS.gene85099:CDS
CATGATGTGTATTCTTTGGC+AGG 0.461287 6.1:+56271537 MS.gene85099:CDS
GACGCAGACACAGAATTGTC+AGG 0.461757 6.1:+56271360 MS.gene85099:CDS
TTGGTACCAGCCATTGGAAT+GGG 0.463729 6.1:-56271060 None:intergenic
CACGACTTGTTTGTGTATAA+CGG 0.466628 6.1:-56271328 None:intergenic
GGAACGTAAAATTGTAAGTC+CGG 0.466692 6.1:-56272086 None:intergenic
ACACAGAATTGTCAGGGTAA+TGG 0.473623 6.1:+56271367 MS.gene85099:CDS
CTGATAAGGATTATGAGAAC+TGG 0.478521 6.1:+56271395 MS.gene85099:CDS
GGCTTTCATTGGAGATTCTG+TGG 0.480446 6.1:+56271495 MS.gene85099:CDS
CAACATCTGTAACGATTGTT+CGG 0.481747 6.1:+56271756 MS.gene85099:CDS
TTACTGAAGCGTTTCAATAC+CGG 0.487641 6.1:+56272299 MS.gene85099:CDS
TCATTCGACTTTGCTCCAGC+TGG 0.487729 6.1:+56271815 MS.gene85099:CDS
ATTACGAAACGAGGCCGAGA+TGG 0.490809 6.1:+56272367 MS.gene85099:CDS
AGATGGAAGGCCACCACCAC+AGG 0.494437 6.1:+56272384 MS.gene85099:CDS
TATAATTCGGATGCGTAACA+AGG 0.495223 6.1:-56272063 None:intergenic
TACACATCATGGACTCCATC+TGG 0.495858 6.1:-56271525 None:intergenic
GAACAACCACATCAAATGTT+GGG 0.498664 6.1:-56271889 None:intergenic
GGGTAATGGAAGGCCTGATA+AGG 0.505102 6.1:+56271381 MS.gene85099:CDS
TCCTCCACCCTCATAATGAT+CGG 0.506582 6.1:-56272116 None:intergenic
GTTAAATGAAAGGCATGAGT+TGG 0.506880 6.1:+56270599 None:intergenic
CGTGAGATATCACACTGAAA+AGG 0.508773 6.1:-56271427 None:intergenic
AAATGAAAGGCATGAGTTGG+AGG 0.509997 6.1:+56270602 None:intergenic
GAGGAATTGGTACCAGCCAT+TGG 0.510096 6.1:-56271066 None:intergenic
GAAAATTGTTCCAGTAACTA+AGG 0.510578 6.1:+56270996 MS.gene85099:CDS
CGACTTTGCTCCAGCTGGTG+TGG 0.512087 6.1:+56271820 MS.gene85099:CDS
TTCGCATGCCGAGACTTGTC+CGG 0.512674 6.1:-56271989 None:intergenic
GAAAATATAATCCGAGAAAG+TGG 0.515657 6.1:-56270658 None:intergenic
CCTCCACCCTCATAATGATC+GGG 0.518353 6.1:-56272115 None:intergenic
TGTGGTGGCCGGACAAGTCT+CGG 0.519743 6.1:+56271981 MS.gene85099:CDS
TACCGGCATGATGGTCATCC+TGG 0.522022 6.1:+56272316 MS.gene85099:CDS
AGAACAACCACATCAAATGT+TGG 0.522389 6.1:-56271890 None:intergenic
AAAGAACCCATTCCAATGGC+TGG 0.533344 6.1:+56271054 MS.gene85099:CDS
GTTACGCATCCGAATTATAC+CGG 0.535945 6.1:+56272067 MS.gene85099:CDS
TAACACACCACTGGAAACTA+CGG 0.538838 6.1:-56270896 None:intergenic
ACACCGGTGGGTCATGCACT+GGG 0.541733 6.1:+56272143 MS.gene85099:CDS
ATTATCACTTAACACACCAC+TGG 0.544862 6.1:-56270905 None:intergenic
ATCATTATGAGGGTGGAGGA+TGG 0.547403 6.1:+56272119 MS.gene85099:CDS
AGCTAATAGTGTTAAATGAA+AGG 0.547690 6.1:+56270589 None:intergenic
TTCTGTGGCTCGAAACCAGA+TGG 0.548549 6.1:+56271510 MS.gene85099:CDS
CTGGTGCATGCCGGGACCTG+TGG 0.549189 6.1:+56272417 MS.gene85099:CDS
AATGAAAGGCATGAGTTGGA+GGG 0.550002 6.1:+56270603 None:intergenic
ATGGTCATCCTGGTCCATAT+AGG 0.551889 6.1:+56272326 MS.gene85099:CDS
TTGTTCGGATATGGTCATCA+TGG 0.551975 6.1:+56271771 MS.gene85099:CDS
TTCCAAGTATCCACAGGTCC+CGG 0.552005 6.1:-56272427 None:intergenic
TTGCTTACACTGGTGCATGC+CGG 0.552014 6.1:+56272408 MS.gene85099:CDS
ATTGGTACCAGCCATTGGAA+TGG 0.552085 6.1:-56271061 None:intergenic
GTGGTGGTGGCCTTCCATCT+CGG 0.552482 6.1:-56272381 None:intergenic
TGTAAGCAATCCTGTGGTGG+TGG 0.554837 6.1:-56272394 None:intergenic
CGGCGAAGCAGATTCACTCA+AGG 0.556899 6.1:-56270974 None:intergenic
ATCTTGAACAATGAGATAGT+TGG 0.557072 6.1:+56271950 MS.gene85099:CDS
ACCAATTCCTCAATTATGAA+AGG 0.557484 6.1:+56271078 MS.gene85099:CDS
CTGCCAAAGAATACACATCA+TGG 0.557593 6.1:-56271536 None:intergenic
GGTGGAGGATGGAACACCGG+TGG 0.567633 6.1:+56272130 MS.gene85099:CDS
TAGATCGAAGATGATACTGA+TGG 0.568064 6.1:+56272273 MS.gene85099:CDS
GCGTTTCAATACCGGCATGA+TGG 0.568138 6.1:+56272307 MS.gene85099:CDS
CCCGATCATTATGAGGGTGG+AGG 0.574500 6.1:+56272115 MS.gene85099:CDS
TGGAGGACAATTGTGGTGGC+CGG 0.575277 6.1:+56271970 MS.gene85099:CDS
TTTCCCAGTGCATGACCCAC+CGG 0.576397 6.1:-56272146 None:intergenic
GATCATATATCCAATTTCCA+TGG 0.577058 6.1:-56271297 None:intergenic
TTGAACAATGAGATAGTTGG+AGG 0.581139 6.1:+56271953 MS.gene85099:CDS
ATCTCATTCCAAGTATCCAC+AGG 0.582412 6.1:-56272433 None:intergenic
AAATTGGATATATGATCCGT+CGG 0.586289 6.1:+56271303 MS.gene85099:CDS
CGAAACGAGGCCGAGATGGA+AGG 0.588106 6.1:+56272371 MS.gene85099:CDS
AGGATTATGAGAACTGGCGA+TGG 0.593464 6.1:+56271401 MS.gene85099:CDS
TCCAAAAGAACCCATTCCAA+TGG 0.594053 6.1:+56271050 MS.gene85099:CDS
AAAGTTAAACCTCTTGCCCC+CGG 0.596651 6.1:+56272166 MS.gene85099:CDS
GCTTATGAGAGGCAAGACAT+TGG 0.598849 6.1:+56271474 MS.gene85099:CDS
AATTGGATATATGATCCGTC+GGG 0.599675 6.1:+56271304 MS.gene85099:CDS
TGGAGGGTTGCATCTCCCAA+AGG 0.601662 6.1:+56270619 MS.gene85099:CDS
TATTCACCCGATCATTATGA+GGG 0.604395 6.1:+56272109 MS.gene85099:CDS
GTGGAGGATGGAACACCGGT+GGG 0.604904 6.1:+56272131 MS.gene85099:CDS
GGCGAAGCAGATTCACTCAA+GGG 0.605573 6.1:-56270973 None:intergenic
ATTTCTCCCAACATTTGATG+TGG 0.613837 6.1:+56271883 MS.gene85099:CDS
GTAGAGGAACCGAAGAATCA+GGG 0.614463 6.1:+56271701 MS.gene85099:CDS
CAACCTTCCGTAGTTTCCAG+TGG 0.618443 6.1:+56270889 MS.gene85099:CDS
GACCAGGATGACCATCATGC+CGG 0.619809 6.1:-56272318 None:intergenic
ATAATTCGGATGCGTAACAA+GGG 0.622296 6.1:-56272062 None:intergenic
ATTCCATGAACATCTCATCA+GGG 0.622889 6.1:-56271862 None:intergenic
TCAGTGCTCCTATATGGACC+AGG 0.625966 6.1:-56272334 None:intergenic
TTCCATGAACATCTCATCAG+GGG 0.632761 6.1:-56271861 None:intergenic
TTTGTGTATAACGGTCCCGA+CGG 0.633930 6.1:-56271319 None:intergenic
ATATCTCACGATTTGATCCG+AGG 0.634495 6.1:+56271440 MS.gene85099:CDS
GAGGGTGGAGGATGGAACAC+CGG 0.634985 6.1:+56272127 MS.gene85099:CDS
AGGGAACTCGCAACATGCAG+CGG 0.641200 6.1:+56271720 MS.gene85099:CDS
AGATAGTTGGAGGACAATTG+TGG 0.641699 6.1:+56271963 MS.gene85099:CDS
GTAGGTTGTGATCTGTACCA+TGG 0.645340 6.1:+56271280 MS.gene85099:intron
AGAATTGTCAGGGTAATGGA+AGG 0.646880 6.1:+56271371 MS.gene85099:CDS
CAGTGTAAGCAATCCTGTGG+TGG 0.647487 6.1:-56272397 None:intergenic
TCACCCGATCATTATGAGGG+TGG 0.649440 6.1:+56272112 MS.gene85099:CDS
ACGCAGACACAGAATTGTCA+GGG 0.653866 6.1:+56271361 MS.gene85099:CDS
CACCACAGGATTGCTTACAC+TGG 0.658766 6.1:+56272398 MS.gene85099:CDS
AATTGTTCCAGTAACTAAGG+AGG 0.662980 6.1:+56270999 MS.gene85099:CDS
CCTAACAAAATTACGAAACG+AGG 0.668392 6.1:+56272358 MS.gene85099:CDS
ACACCACTGGAAACTACGGA+AGG 0.679340 6.1:-56270892 None:intergenic
TAGTTGGAGGACAATTGTGG+TGG 0.686111 6.1:+56271966 MS.gene85099:CDS
ATCATTAAGAGAGAATACGA+AGG 0.696707 6.1:+56272466 MS.gene85099:CDS
CACCAGTGTAAGCAATCCTG+TGG 0.710957 6.1:-56272400 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATGCAAATAAAATTTGTA+TGG - chr6.1:56271574-56271593 None:intergenic 15.0%
!! AGTAATTTCAAGAAAATCAA+TGG - chr6.1:56271208-56271227 None:intergenic 20.0%
!! TATTTGCATAACTAATAGAA+TGG + chr6.1:56271583-56271602 MS.gene85099:intron 20.0%
!!! TATCTTTTCACTTTTATGAA+TGG + chr6.1:56271241-56271260 MS.gene85099:intron 20.0%
! AACATTACCTTTCATAATTG+AGG - chr6.1:56271088-56271107 None:intergenic 25.0%
! TTAATTGCAAACGATATTTC+AGG + chr6.1:56271679-56271698 MS.gene85099:intron 25.0%
!! TATTCATAACTTTTGCTTCA+TGG + chr6.1:56270698-56270717 MS.gene85099:CDS 25.0%
!! TTAGTTACTGGAACAATTTT+CGG - chr6.1:56270997-56271016 None:intergenic 25.0%
!!! TTTTTTCTTTCATACCCTAT+TGG + chr6.1:56270721-56270740 MS.gene85099:CDS 25.0%
AAATTGGATATATGATCCGT+CGG + chr6.1:56271303-56271322 MS.gene85099:CDS 30.0%
ACCAATTCCTCAATTATGAA+AGG + chr6.1:56271078-56271097 MS.gene85099:CDS 30.0%
ACCTTTCATAATTGAGGAAT+TGG - chr6.1:56271082-56271101 None:intergenic 30.0%
ATCATTAAGAGAGAATACGA+AGG + chr6.1:56272466-56272485 MS.gene85099:CDS 30.0%
ATCTTGAACAATGAGATAGT+TGG + chr6.1:56271950-56271969 MS.gene85099:CDS 30.0%
ATTGTAAGTCCGGTATAATT+CGG - chr6.1:56272079-56272098 None:intergenic 30.0%
GAAAATATAATCCGAGAAAG+TGG - chr6.1:56270661-56270680 None:intergenic 30.0%
GAAAATTGTTCCAGTAACTA+AGG + chr6.1:56270996-56271015 MS.gene85099:CDS 30.0%
GATACAAACACTAACGATTA+CGG - chr6.1:56271151-56271170 None:intergenic 30.0%
GATCATATATCCAATTTCCA+TGG - chr6.1:56271300-56271319 None:intergenic 30.0%
! ACTGTTCATGGTTATTTCAA+TGG + chr6.1:56270748-56270767 MS.gene85099:CDS 30.0%
! TATATTTTCAGTTGGAGTAG+TGG + chr6.1:56270672-56270691 MS.gene85099:CDS 30.0%
! TCTCGGATTATATTTTCAGT+TGG + chr6.1:56270664-56270683 MS.gene85099:CDS 30.0%
!!! GGTTGTTTTTATTGTCAAGT+AGG + chr6.1:56271262-56271281 MS.gene85099:intron 30.0%
!!! TGATTTGCTTTGTTCTCTTT+TGG + chr6.1:56271112-56271131 MS.gene85099:intron 30.0%
AATTCCATGAACATCTCATC+AGG - chr6.1:56271866-56271885 None:intergenic 35.0%
AATTGGATATATGATCCGTC+GGG + chr6.1:56271304-56271323 MS.gene85099:CDS 35.0%
AATTGTTCCAGTAACTAAGG+AGG + chr6.1:56270999-56271018 MS.gene85099:CDS 35.0%
AGAACAACCACATCAAATGT+TGG - chr6.1:56271893-56271912 None:intergenic 35.0%
AGTCCATGATGTGTATTCTT+TGG + chr6.1:56271533-56271552 MS.gene85099:CDS 35.0%
ATAAGCTCCAAAAACTTCCT+CGG - chr6.1:56271460-56271479 None:intergenic 35.0%
ATAATCCGAGAAAGTGGTTT+CGG - chr6.1:56270655-56270674 None:intergenic 35.0%
ATAATTCGGATGCGTAACAA+GGG - chr6.1:56272065-56272084 None:intergenic 35.0%
ATTATCACTTAACACACCAC+TGG - chr6.1:56270908-56270927 None:intergenic 35.0%
ATTCCATGAACATCTCATCA+GGG - chr6.1:56271865-56271884 None:intergenic 35.0%
ATTTCTCCCAACATTTGATG+TGG + chr6.1:56271883-56271902 MS.gene85099:CDS 35.0%
CAACATCTGTAACGATTGTT+CGG + chr6.1:56271756-56271775 MS.gene85099:CDS 35.0%
CAGTTCTCATAATCCTTATC+AGG - chr6.1:56271397-56271416 None:intergenic 35.0%
CATGAACAGTTGAACCAATA+GGG - chr6.1:56270738-56270757 None:intergenic 35.0%
CCTAACAAAATTACGAAACG+AGG + chr6.1:56272358-56272377 MS.gene85099:CDS 35.0%
CTGATAAGGATTATGAGAAC+TGG + chr6.1:56271395-56271414 MS.gene85099:CDS 35.0%
GAACAACCACATCAAATGTT+GGG - chr6.1:56271892-56271911 None:intergenic 35.0%
GGAACGTAAAATTGTAAGTC+CGG - chr6.1:56272089-56272108 None:intergenic 35.0%
GGGTACTTGCAAATTTGAAT+TGG - chr6.1:56270956-56270975 None:intergenic 35.0%
TAGATCGAAGATGATACTGA+TGG + chr6.1:56272273-56272292 MS.gene85099:CDS 35.0%
TATAATTCGGATGCGTAACA+AGG - chr6.1:56272066-56272085 None:intergenic 35.0%
TATTCACCCGATCATTATGA+GGG + chr6.1:56272109-56272128 MS.gene85099:CDS 35.0%
TGCCTTAGAAACTTCTGATT+CGG + chr6.1:56271026-56271045 MS.gene85099:CDS 35.0%
TGTTAAGTAAGAACTTCGCA+TGG + chr6.1:56271172-56271191 MS.gene85099:intron 35.0%
TTCGGATTTGAAGAACCTTT+GGG - chr6.1:56270637-56270656 None:intergenic 35.0%
TTGAACAATGAGATAGTTGG+AGG + chr6.1:56271953-56271972 MS.gene85099:CDS 35.0%
TTGTTCTATCATCTGGTCAT+TGG + chr6.1:56271906-56271925 MS.gene85099:CDS 35.0%
TTTCGGATTTGAAGAACCTT+TGG - chr6.1:56270638-56270657 None:intergenic 35.0%
! ATTTGATCCGAGGAAGTTTT+TGG + chr6.1:56271450-56271469 MS.gene85099:CDS 35.0%
! CACGACTTGTTTGTGTATAA+CGG - chr6.1:56271331-56271350 None:intergenic 35.0%
! CCTCGTTTCGTAATTTTGTT+AGG - chr6.1:56272361-56272380 None:intergenic 35.0%
! TTACTGAAGCGTTTCAATAC+CGG + chr6.1:56272299-56272318 MS.gene85099:CDS 35.0%
! TTATTTTCCACCAATTCACC+GGG - chr6.1:56272187-56272206 None:intergenic 35.0%
! TTTTAACCGTGCAGCAAAAA+AGG + chr6.1:56272243-56272262 MS.gene85099:CDS 35.0%
!! CTTATTTTCCACCAATTCAC+CGG - chr6.1:56272188-56272207 None:intergenic 35.0%
!!! AAGTTTTTGGAGCTTATGAG+AGG + chr6.1:56271463-56271482 MS.gene85099:CDS 35.0%
ACACAGAATTGTCAGGGTAA+TGG + chr6.1:56271367-56271386 MS.gene85099:CDS 40.0%
AGATAGTTGGAGGACAATTG+TGG + chr6.1:56271963-56271982 MS.gene85099:CDS 40.0%
AGCCGAATCAGAAGTTTCTA+AGG - chr6.1:56271031-56271050 None:intergenic 40.0%
ATATCTCACGATTTGATCCG+AGG + chr6.1:56271440-56271459 MS.gene85099:CDS 40.0%
ATCTCATTCCAAGTATCCAC+AGG - chr6.1:56272436-56272455 None:intergenic 40.0%
ATGTATGAGCAACAGGTTAC+AGG + chr6.1:56272220-56272239 MS.gene85099:CDS 40.0%
CAAATCCGAAACCACTTTCT+CGG + chr6.1:56270647-56270666 MS.gene85099:CDS 40.0%
CATGATGTGTATTCTTTGGC+AGG + chr6.1:56271537-56271556 MS.gene85099:CDS 40.0%
CCATGAACAGTTGAACCAAT+AGG - chr6.1:56270739-56270758 None:intergenic 40.0%
CGTGAGATATCACACTGAAA+AGG - chr6.1:56271430-56271449 None:intergenic 40.0%
CTATTCACCCGATCATTATG+AGG + chr6.1:56272108-56272127 MS.gene85099:CDS 40.0%
CTCATAATGATCGGGTGAAT+AGG - chr6.1:56272110-56272129 None:intergenic 40.0%
CTGCCAAAGAATACACATCA+TGG - chr6.1:56271539-56271558 None:intergenic 40.0%
CTGTAACGATTGTTCGGATA+TGG + chr6.1:56271762-56271781 MS.gene85099:CDS 40.0%
GATGTGGTTGTTCTATCATC+TGG + chr6.1:56271899-56271918 MS.gene85099:CDS 40.0%
GTAGAGAGTTCACAAACTTC+TGG + chr6.1:56270772-56270791 MS.gene85099:CDS 40.0%
GTGATCTGTACCATGGAAAT+TGG + chr6.1:56271287-56271306 MS.gene85099:CDS 40.0%
GTTACGCATCCGAATTATAC+CGG + chr6.1:56272067-56272086 MS.gene85099:CDS 40.0%
TAACACACCACTGGAAACTA+CGG - chr6.1:56270899-56270918 None:intergenic 40.0%
TAGAATGGTTCCATACGTGT+CGG + chr6.1:56271598-56271617 MS.gene85099:intron 40.0%
TCCAAAAGAACCCATTCCAA+TGG + chr6.1:56271050-56271069 MS.gene85099:CDS 40.0%
TCTGTGTCTGCGTCAATATA+GGG - chr6.1:56271354-56271373 None:intergenic 40.0%
TTAGGATCAGTGCTCCTATA+TGG - chr6.1:56272343-56272362 None:intergenic 40.0%
TTCCATGAACATCTCATCAG+GGG - chr6.1:56271864-56271883 None:intergenic 40.0%
TTCTGTGTCTGCGTCAATAT+AGG - chr6.1:56271355-56271374 None:intergenic 40.0%
TTGTTCGGATATGGTCATCA+TGG + chr6.1:56271771-56271790 MS.gene85099:CDS 40.0%
! ATCAACAGCATCGAAGCATT+TGG + chr6.1:56272013-56272032 MS.gene85099:CDS 40.0%
! GCAAACGATATTTCAGGTAG+AGG + chr6.1:56271685-56271704 MS.gene85099:intron 40.0%
! TATTTTCCACCAATTCACCG+GGG - chr6.1:56272186-56272205 None:intergenic 40.0%
!! AGAATTGTCAGGGTAATGGA+AGG + chr6.1:56271371-56271390 MS.gene85099:CDS 40.0%
!! CCTATTGGTTCAACTGTTCA+TGG + chr6.1:56270736-56270755 MS.gene85099:CDS 40.0%
!!! TTGTCTCCTTTTTTGCTGCA+CGG - chr6.1:56272252-56272271 None:intergenic 40.0%
AAAGAACCCATTCCAATGGC+TGG + chr6.1:56271054-56271073 MS.gene85099:CDS 45.0%
AAAGTTAAACCTCTTGCCCC+CGG + chr6.1:56272166-56272185 MS.gene85099:CDS 45.0%
ACGCAGACACAGAATTGTCA+GGG + chr6.1:56271361-56271380 MS.gene85099:CDS 45.0%
AGGATTATGAGAACTGGCGA+TGG + chr6.1:56271401-56271420 MS.gene85099:CDS 45.0%
ATCATTATGAGGGTGGAGGA+TGG + chr6.1:56272119-56272138 MS.gene85099:CDS 45.0%
ATCCCCTGATGAGATGTTCA+TGG + chr6.1:56271859-56271878 MS.gene85099:CDS 45.0%
ATGGTCATCCTGGTCCATAT+AGG + chr6.1:56272326-56272345 MS.gene85099:CDS 45.0%
ATTGGTACCAGCCATTGGAA+TGG - chr6.1:56271064-56271083 None:intergenic 45.0%
GCTTATGAGAGGCAAGACAT+TGG + chr6.1:56271474-56271493 MS.gene85099:CDS 45.0%
GGCTTTCATTGGAGATTCTG+TGG + chr6.1:56271495-56271514 MS.gene85099:CDS 45.0%
GTAGAGGAACCGAAGAATCA+GGG + chr6.1:56271701-56271720 MS.gene85099:CDS 45.0%
GTAGGTTGTGATCTGTACCA+TGG + chr6.1:56271280-56271299 MS.gene85099:intron 45.0%
TACACATCATGGACTCCATC+TGG - chr6.1:56271528-56271547 None:intergenic 45.0%
TAGTTGGAGGACAATTGTGG+TGG + chr6.1:56271966-56271985 MS.gene85099:CDS 45.0%
TCAGTGTCGTGTCTAGTATC+TGG + chr6.1:56271623-56271642 MS.gene85099:intron 45.0%
TCCTCCACCCTCATAATGAT+CGG - chr6.1:56272119-56272138 None:intergenic 45.0%
TGTCTAGTATCTGGTGTTCG+TGG + chr6.1:56271632-56271651 MS.gene85099:intron 45.0%
TTGCGAGTTCCCTGATTCTT+CGG - chr6.1:56271713-56271732 None:intergenic 45.0%
TTGGTACCAGCCATTGGAAT+GGG - chr6.1:56271063-56271082 None:intergenic 45.0%
TTTGTGTATAACGGTCCCGA+CGG - chr6.1:56271322-56271341 None:intergenic 45.0%
! ATTTTCCACCAATTCACCGG+GGG - chr6.1:56272185-56272204 None:intergenic 45.0%
! TAGATTTTCTCCACACCAGC+TGG - chr6.1:56271833-56271852 None:intergenic 45.0%
!! GCCATTGGAATGGGTTCTTT+TGG - chr6.1:56271054-56271073 None:intergenic 45.0%
!! GGCAAGACATTGGCTTTCAT+TGG + chr6.1:56271484-56271503 MS.gene85099:CDS 45.0%
ACACCACTGGAAACTACGGA+AGG - chr6.1:56270895-56270914 None:intergenic 50.0%
ATTACGAAACGAGGCCGAGA+TGG + chr6.1:56272367-56272386 MS.gene85099:CDS 50.0%
CAACCTTCCGTAGTTTCCAG+TGG + chr6.1:56270889-56270908 MS.gene85099:CDS 50.0%
CACCACAGGATTGCTTACAC+TGG + chr6.1:56272398-56272417 MS.gene85099:CDS 50.0%
CACCAGTGTAAGCAATCCTG+TGG - chr6.1:56272403-56272422 None:intergenic 50.0%
CAGTGTAAGCAATCCTGTGG+TGG - chr6.1:56272400-56272419 None:intergenic 50.0%
CCTCCACCCTCATAATGATC+GGG - chr6.1:56272118-56272137 None:intergenic 50.0%
CGCTTCGATGTATGAGCAAC+AGG + chr6.1:56272213-56272232 MS.gene85099:CDS 50.0%
CTAGTATCTGGTGTTCGTGG+CGG + chr6.1:56271635-56271654 MS.gene85099:intron 50.0%
GACGCAGACACAGAATTGTC+AGG + chr6.1:56271360-56271379 MS.gene85099:CDS 50.0%
GAGGAATTGGTACCAGCCAT+TGG - chr6.1:56271069-56271088 None:intergenic 50.0%
GCACTCACCTCCTTAGTTAC+TGG - chr6.1:56271009-56271028 None:intergenic 50.0%
GCGTTTCAATACCGGCATGA+TGG + chr6.1:56272307-56272326 MS.gene85099:CDS 50.0%
GGCGAAGCAGATTCACTCAA+GGG - chr6.1:56270976-56270995 None:intergenic 50.0%
GGTAGAGGAACCGAAGAATC+AGG + chr6.1:56271700-56271719 MS.gene85099:intron 50.0%
TCACCCGATCATTATGAGGG+TGG + chr6.1:56272112-56272131 MS.gene85099:CDS 50.0%
TCAGTGCTCCTATATGGACC+AGG - chr6.1:56272337-56272356 None:intergenic 50.0%
TCATTCGACTTTGCTCCAGC+TGG + chr6.1:56271815-56271834 MS.gene85099:CDS 50.0%
TGTAAGCAATCCTGTGGTGG+TGG - chr6.1:56272397-56272416 None:intergenic 50.0%
TTCCAAGTATCCACAGGTCC+CGG - chr6.1:56272430-56272449 None:intergenic 50.0%
TTCTGTGGCTCGAAACCAGA+TGG + chr6.1:56271510-56271529 MS.gene85099:CDS 50.0%
TTGCTTACACTGGTGCATGC+CGG + chr6.1:56272408-56272427 MS.gene85099:CDS 50.0%
!! GGGTAATGGAAGGCCTGATA+AGG + chr6.1:56271381-56271400 MS.gene85099:CDS 50.0%
AGGGAACTCGCAACATGCAG+CGG + chr6.1:56271720-56271739 MS.gene85099:CDS 55.0%
CCCGATCATTATGAGGGTGG+AGG + chr6.1:56272115-56272134 MS.gene85099:CDS 55.0%
CGGCGAAGCAGATTCACTCA+AGG - chr6.1:56270977-56270996 None:intergenic 55.0%
GACACTGACACCGACACGTA+TGG - chr6.1:56271611-56271630 None:intergenic 55.0%
GACCAGGATGACCATCATGC+CGG - chr6.1:56272321-56272340 None:intergenic 55.0%
TACCGGCATGATGGTCATCC+TGG + chr6.1:56272316-56272335 MS.gene85099:CDS 55.0%
TGCTTACACTGGTGCATGCC+GGG + chr6.1:56272409-56272428 MS.gene85099:CDS 55.0%
TGGAGGACAATTGTGGTGGC+CGG + chr6.1:56271970-56271989 MS.gene85099:CDS 55.0%
TGGAGGGTTGCATCTCCCAA+AGG + chr6.1:56270619-56270638 MS.gene85099:CDS 55.0%
TTCGCATGCCGAGACTTGTC+CGG - chr6.1:56271992-56272011 None:intergenic 55.0%
TTTCCCAGTGCATGACCCAC+CGG - chr6.1:56272149-56272168 None:intergenic 55.0%
AACACCGGTGGGTCATGCAC+TGG + chr6.1:56272142-56272161 MS.gene85099:CDS 60.0%
ACACCGGTGGGTCATGCACT+GGG + chr6.1:56272143-56272162 MS.gene85099:CDS 60.0%
ACCAATTCACCGGGGGCAAG+AGG - chr6.1:56272178-56272197 None:intergenic 60.0%
ACCTCTTGCCCCCGGTGAAT+TGG + chr6.1:56272174-56272193 MS.gene85099:CDS 60.0%
AGATGGAAGGCCACCACCAC+AGG + chr6.1:56272384-56272403 MS.gene85099:CDS 60.0%
CGAAACGAGGCCGAGATGGA+AGG + chr6.1:56272371-56272390 MS.gene85099:CDS 60.0%
CGACTTTGCTCCAGCTGGTG+TGG + chr6.1:56271820-56271839 MS.gene85099:CDS 60.0%
GAGGGTGGAGGATGGAACAC+CGG + chr6.1:56272127-56272146 MS.gene85099:CDS 60.0%
GTGGAGGATGGAACACCGGT+GGG + chr6.1:56272131-56272150 MS.gene85099:CDS 60.0%
TCTTGCCCCCGGTGAATTGG+TGG + chr6.1:56272177-56272196 MS.gene85099:CDS 60.0%
TGCCGGGACCTGTGGATACT+TGG + chr6.1:56272425-56272444 MS.gene85099:CDS 60.0%
TGTGGTGGCCGGACAAGTCT+CGG + chr6.1:56271981-56272000 MS.gene85099:CDS 60.0%
!! GTGGTGGTGGCCTTCCATCT+CGG - chr6.1:56272384-56272403 None:intergenic 60.0%
GGTGGAGGATGGAACACCGG+TGG + chr6.1:56272130-56272149 MS.gene85099:CDS 65.0%
CTGGTGCATGCCGGGACCTG+TGG + chr6.1:56272417-56272436 MS.gene85099:CDS 70.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 56270604 56272504 56270604 ID=MS.gene85099
chr6.1 mRNA 56270604 56272504 56270604 ID=MS.gene85099.t1;Parent=MS.gene85099
chr6.1 exon 56270604 56271099 56270604 ID=MS.gene85099.t1.exon1;Parent=MS.gene85099.t1
chr6.1 CDS 56270604 56271099 56270604 ID=cds.MS.gene85099.t1;Parent=MS.gene85099.t1
chr6.1 exon 56271284 56271558 56271284 ID=MS.gene85099.t1.exon2;Parent=MS.gene85099.t1
chr6.1 CDS 56271284 56271558 56271284 ID=cds.MS.gene85099.t1;Parent=MS.gene85099.t1
chr6.1 exon 56271701 56272504 56271701 ID=MS.gene85099.t1.exon3;Parent=MS.gene85099.t1
chr6.1 CDS 56271701 56272504 56271701 ID=cds.MS.gene85099.t1;Parent=MS.gene85099.t1
Gene Sequence

>MS.gene85099

ATGAAAGGCATGAGTTGGAGGGTTGCATCTCCCAAAGGTTCTTCAAATCCGAAACCACTTTCTCGGATTATATTTTCAGTTGGAGTAGTGGCAGTATTCATAACTTTTGCTTCATGGTTTTTTCTTTCATACCCTATTGGTTCAACTGTTCATGGTTATTTCAATGGTGTAGAGAGTTCACAAACTTCTGGTTTATCAGTCTCTCAGAAAATCAATACAACTTCTGTTGATCTTCACACGAATTCAAGTTTAGATTTAGTAGATAATAAATCACTCATTGATCTGCAACCTTCCGTAGTTTCCAGTGGTGTGTTAAGTGATAATAGCAGTAAGATAGAACAAGTTGATACCAATTCAAATTTGCAAGTACCCTTGAGTGAATCTGCTTCGCCGAAAATTGTTCCAGTAACTAAGGAGGTGAGTGCCTTAGAAACTTCTGATTCGGCTCCAAAAGAACCCATTCCAATGGCTGGTACCAATTCCTCAATTATGAAAGGTAATGTTAGTTTGATTTGCTTTGTTCTCTTTTGGAAATACAATACAGCCGTAATCGTTAGTGTTTGTATCTTGTTAAGTAAGAACTTCGCATGGATAATTCTTTCCATTGATTTTCTTGAAATTACTTTGCAAGTTTTTATATCTTTTCACTTTTATGAATGGTTGTTTTTATTGTCAAGTAGGTTGTGATCTGTACCATGGAAATTGGATATATGATCCGTCGGGACCGTTATACACAAACAAGTCGTGCCCTATATTGACGCAGACACAGAATTGTCAGGGTAATGGAAGGCCTGATAAGGATTATGAGAACTGGCGATGGAAGCCTTTTCAGTGTGATATCTCACGATTTGATCCGAGGAAGTTTTTGGAGCTTATGAGAGGCAAGACATTGGCTTTCATTGGAGATTCTGTGGCTCGAAACCAGATGGAGTCCATGATGTGTATTCTTTGGCAGGTCATTTTCATTCCATACAAATTTTATTTGCATAACTAATAGAATGGTTCCATACGTGTCGGTGTCAGTGTCGTGTCTAGTATCTGGTGTTCGTGGCGGTGCTTCATAGAAATTAAATACTTAATTGCAAACGATATTTCAGGTAGAGGAACCGAAGAATCAGGGAACTCGCAACATGCAGCGGTATTATTTTGAGTCAACATCTGTAACGATTGTTCGGATATGGTCATCATGGCTTGTCAAACACAATTCAGAATCATTCGACTTTGCTCCAGCTGGTGTGGAGAAAATCTATCTCGAATCCCCTGATGAGATGTTCATGGAATTTCTCCCAACATTTGATGTGGTTGTTCTATCATCTGGTCATTGGTTTACTAAACAATCAGTATACATCTTGAACAATGAGATAGTTGGAGGACAATTGTGGTGGCCGGACAAGTCTCGGCATGCGAAGATCAACAGCATCGAAGCATTTGGTATATCTGTTGAAACAATTCTCACTGCCCTTGTTACGCATCCGAATTATACCGGACTTACAATTTTACGTTCCTATTCACCCGATCATTATGAGGGTGGAGGATGGAACACCGGTGGGTCATGCACTGGGAAAGTTAAACCTCTTGCCCCCGGTGAATTGGTGGAAAATAAGTATCTCGCTTCGATGTATGAGCAACAGGTTACAGGTTTTAACCGTGCAGCAAAAAAGGAGACAAATAGATCGAAGATGATACTGATGGATATTACTGAAGCGTTTCAATACCGGCATGATGGTCATCCTGGTCCATATAGGAGCACTGATCCTAACAAAATTACGAAACGAGGCCGAGATGGAAGGCCACCACCACAGGATTGCTTACACTGGTGCATGCCGGGACCTGTGGATACTTGGAATGAGATTGTGTTTGAAATCATTAAGAGAGAATACGAAGGCAATAACATATCATGA
Protein sequence

>MS.gene85099.t1

MKGMSWRVASPKGSSNPKPLSRIIFSVGVVAVFITFASWFFLSYPIGSTVHGYFNGVESSQTSGLSVSQKINTTSVDLHTNSSLDLVDNKSLIDLQPSVVSSGVLSDNSSKIEQVDTNSNLQVPLSESASPKIVPVTKEVSALETSDSAPKEPIPMAGTNSSIMKGCDLYHGNWIYDPSGPLYTNKSCPILTQTQNCQGNGRPDKDYENWRWKPFQCDISRFDPRKFLELMRGKTLAFIGDSVARNQMESMMCILWQVEEPKNQGTRNMQRYYFESTSVTIVRIWSSWLVKHNSESFDFAPAGVEKIYLESPDEMFMEFLPTFDVVVLSSGHWFTKQSVYILNNEIVGGQLWWPDKSRHAKINSIEAFGISVETILTALVTHPNYTGLTILRSYSPDHYEGGGWNTGGSCTGKVKPLAPGELVENKYLASMYEQQVTGFNRAAKKETNRSKMILMDITEAFQYRHDGHPGPYRSTDPNKITKRGRDGRPPPQDCLHWCMPGPVDTWNEIVFEIIKREYEGNNIS