AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85598

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85598.t1 MTR_1g076690 98.276 580 10 0 1 580 1 580 0.0 1184
MS.gene85598.t1 MTR_6g061710 58.854 576 167 7 6 580 18 524 0.0 685
MS.gene85598.t1 MTR_6g016880 34.949 392 225 10 198 573 45 422 2.64e-78 254
MS.gene85598.t1 MTR_8g099300 36.158 354 212 8 223 570 74 419 7.00e-77 250
MS.gene85598.t1 MTR_7g019120 34.783 368 224 6 211 573 67 423 7.69e-77 250
MS.gene85598.t1 MTR_7g033230 35.240 437 250 13 145 572 199 611 5.75e-73 245
MS.gene85598.t1 MTR_7g033230 35.240 437 250 13 145 572 269 681 2.63e-72 245
MS.gene85598.t1 MTR_6g016875 34.239 368 217 7 215 571 56 409 1.16e-70 234
MS.gene85598.t1 MTR_6g007777 35.196 358 212 9 223 573 116 460 1.85e-70 234
MS.gene85598.t1 MTR_8g027900 36.188 362 216 9 215 570 203 555 1.94e-70 237
MS.gene85598.t1 MTR_5g035090 36.538 364 200 10 223 572 83 429 6.05e-70 232
MS.gene85598.t1 MTR_3g109840 34.351 393 233 10 186 572 44 417 1.51e-67 225
MS.gene85598.t1 MTR_2g016060 35.135 370 207 10 219 572 50 402 3.42e-67 224
MS.gene85598.t1 MTR_8g104970 33.898 413 245 12 165 571 76 466 3.79e-65 221
MS.gene85598.t1 MTR_5g035080 34.167 360 215 10 223 572 75 422 7.31e-65 219
MS.gene85598.t1 MTR_5g035150 34.160 363 212 11 223 572 85 433 8.02e-65 218
MS.gene85598.t1 MTR_5g035070 35.734 361 209 10 223 572 87 435 2.81e-60 207
MS.gene85598.t1 MTR_7g093450 28.305 537 289 19 105 575 87 593 1.78e-53 192
MS.gene85598.t1 MTR_7g094750 33.607 366 207 10 223 573 91 435 6.12e-53 187
MS.gene85598.t1 MTR_0136s0010 31.025 361 207 12 223 566 170 505 2.05e-52 187
MS.gene85598.t1 MTR_5g033800 31.300 377 221 11 201 566 130 479 1.06e-50 182
MS.gene85598.t1 MTR_8g093870 31.122 392 212 14 204 570 114 472 1.43e-50 181
MS.gene85598.t1 MTR_4g126950 29.156 391 237 10 190 566 78 442 4.69e-50 179
MS.gene85598.t1 MTR_4g125060 29.356 528 277 20 96 570 26 510 6.41e-50 180
MS.gene85598.t1 MTR_7g109550 32.432 370 183 15 223 567 137 464 2.61e-49 178
MS.gene85598.t1 MTR_8g069790 30.311 386 222 12 198 566 157 512 3.34e-49 179
MS.gene85598.t1 MTR_4g125060 29.020 510 267 19 114 570 72 539 5.44e-49 178
MS.gene85598.t1 MTR_4g125060 28.033 478 274 16 117 570 40 471 8.32e-48 174
MS.gene85598.t1 MTR_2g022560 32.514 366 206 9 222 570 96 437 1.57e-47 172
MS.gene85598.t1 MTR_5g071350 31.034 377 224 11 205 566 40 395 2.02e-47 171
MS.gene85598.t1 MTR_5g059400 30.263 380 210 12 219 572 171 521 4.67e-47 173
MS.gene85598.t1 MTR_1g116130 30.263 380 210 12 219 572 171 521 4.67e-47 173
MS.gene85598.t1 MTR_8g463790 28.989 376 226 13 219 578 67 417 4.58e-46 167
MS.gene85598.t1 MTR_4g121560 28.462 390 244 10 195 570 85 453 3.81e-45 166
MS.gene85598.t1 MTR_3g049330 29.670 364 210 12 212 566 20 346 5.63e-41 152
MS.gene85598.t1 MTR_1g112210 30.791 354 188 14 223 566 59 365 6.72e-41 152
MS.gene85598.t1 MTR_1g058380 30.591 389 202 14 222 580 54 404 1.31e-40 152
MS.gene85598.t1 MTR_1g112210 30.447 358 197 14 223 566 59 378 1.57e-40 151
MS.gene85598.t1 MTR_5g083260 28.571 399 250 16 184 567 43 421 4.89e-40 151
MS.gene85598.t1 MTR_1g050448 30.366 382 224 13 196 570 29 375 9.15e-40 149
MS.gene85598.t1 MTR_3g071650 28.061 392 256 13 186 567 52 427 1.40e-39 150
MS.gene85598.t1 MTR_3g070900 30.833 360 213 14 223 566 106 445 1.39e-38 147
MS.gene85598.t1 MTR_4g014430 27.778 378 226 15 212 570 97 446 4.43e-38 146
MS.gene85598.t1 MTR_4g014440 28.184 369 225 12 221 570 60 407 5.37e-38 145
MS.gene85598.t1 MTR_7g070060 28.232 379 244 13 205 570 46 409 1.87e-37 144
MS.gene85598.t1 MTR_3g090120 29.032 372 213 14 222 576 128 465 3.56e-37 144
MS.gene85598.t1 MTR_3g021060 29.891 368 188 13 223 570 46 363 3.98e-37 142
MS.gene85598.t1 MTR_2g073510 29.600 375 205 17 212 570 22 353 4.02e-37 141
MS.gene85598.t1 MTR_3g464570 28.056 360 213 11 223 566 43 372 5.12e-37 142
MS.gene85598.t1 MTR_1g111010 31.564 358 187 15 223 570 32 341 7.56e-37 140
MS.gene85598.t1 MTR_8g093530 26.525 377 232 11 211 575 78 421 1.29e-36 142
MS.gene85598.t1 MTR_3g035830 28.415 366 188 13 223 566 31 344 4.46e-36 138
MS.gene85598.t1 MTR_2g091175 30.199 351 200 13 223 566 50 362 2.56e-35 137
MS.gene85598.t1 MTR_2g015720 30.471 361 194 16 219 566 38 354 2.99e-35 136
MS.gene85598.t1 MTR_5g034810 27.083 384 236 12 190 566 2 348 3.36e-35 136
MS.gene85598.t1 MTR_4g079700 29.577 355 197 14 223 566 47 359 1.01e-34 135
MS.gene85598.t1 MTR_3g021090 28.689 366 187 13 223 566 31 344 1.27e-34 135
MS.gene85598.t1 MTR_7g019140 50.476 105 52 0 211 315 67 171 3.86e-34 127
MS.gene85598.t1 MTR_5g082880 27.869 366 219 13 223 566 165 507 1.41e-33 134
MS.gene85598.t1 MTR_4g016940 26.923 364 228 14 223 570 86 427 1.49e-33 133
MS.gene85598.t1 MTR_4g088030 28.371 356 207 12 220 566 30 346 2.11e-33 131
MS.gene85598.t1 MTR_7g068920 25.895 363 233 13 223 570 80 421 3.97e-33 132
MS.gene85598.t1 MTR_7g094750 34.146 246 142 7 223 456 91 328 5.45e-32 126
MS.gene85598.t1 MTR_4g092830 27.198 364 230 12 223 570 48 392 1.21e-31 127
MS.gene85598.t1 MTR_5g035120 51.685 89 43 0 223 311 75 163 3.87e-31 119
MS.gene85598.t1 MTR_2g073500 29.086 361 201 14 218 566 24 341 5.08e-31 124
MS.gene85598.t1 MTR_4g087730 28.571 350 208 13 223 566 45 358 1.07e-29 120
MS.gene85598.t1 MTR_5g033800 34.826 201 115 5 201 393 130 322 1.69e-29 120
MS.gene85598.t1 MTR_6g016240 24.934 377 235 12 215 568 63 414 1.20e-28 119
MS.gene85598.t1 MTR_5g035140 31.660 259 150 12 327 573 25 268 3.65e-28 114
MS.gene85598.t1 MTR_7g070060 44.444 108 59 1 205 311 46 153 1.52e-25 107
MS.gene85598.t1 MTR_3g464570 25.424 295 174 11 287 565 3 267 3.20e-16 79.7
MS.gene85598.t1 MTR_7g070060 24.351 308 206 12 275 570 15 307 4.23e-15 77.0
MS.gene85598.t1 MTR_0929s0010 46.667 60 32 0 211 270 67 126 9.65e-14 68.6
MS.gene85598.t1 MTR_7g019130 31.068 103 69 1 359 461 24 124 1.56e-13 68.6
MS.gene85598.t1 MTR_5g069320 24.579 297 147 11 278 563 156 386 2.49e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85598.t1 AT4G25360 55.517 580 187 9 5 578 18 532 0.0 640
MS.gene85598.t1 AT4G25360 55.517 580 187 9 5 578 18 532 0.0 640
MS.gene85598.t1 AT5G51640 73.995 373 94 2 211 580 126 498 0.0 617
MS.gene85598.t1 AT5G15900 38.265 392 216 12 197 577 40 416 7.49e-82 263
MS.gene85598.t1 AT5G15900 38.265 392 216 12 197 577 59 435 1.07e-81 263
MS.gene85598.t1 AT1G01430 37.726 387 223 11 196 570 67 447 2.77e-81 263
MS.gene85598.t1 AT5G15890 37.640 356 196 8 223 571 187 523 5.23e-78 256
MS.gene85598.t1 AT4G11090 38.071 394 226 12 186 570 41 425 8.57e-78 253
MS.gene85598.t1 AT4G23790 37.360 356 208 8 223 570 79 427 1.34e-76 249
MS.gene85598.t1 AT1G70230 38.462 364 181 11 223 572 79 413 1.87e-75 246
MS.gene85598.t1 AT4G01080 38.315 368 209 9 214 575 81 436 1.77e-74 244
MS.gene85598.t1 AT3G02440 33.803 355 217 7 223 571 127 469 2.22e-73 243
MS.gene85598.t1 AT3G02440 33.803 355 217 7 223 571 135 477 3.15e-73 242
MS.gene85598.t1 AT3G28150 32.410 361 223 8 219 572 66 412 1.47e-65 220
MS.gene85598.t1 AT5G49340 31.169 385 214 9 204 566 82 437 5.53e-52 185
MS.gene85598.t1 AT1G60790 30.083 482 277 16 110 566 82 528 6.97e-52 186
MS.gene85598.t1 AT5G20590 32.964 361 201 11 222 566 140 475 7.37e-52 185
MS.gene85598.t1 AT5G06700 29.834 362 210 10 223 566 255 590 3.81e-49 180
MS.gene85598.t1 AT3G06080 30.481 374 213 10 221 573 101 448 4.57e-48 174
MS.gene85598.t1 AT1G73140 30.831 373 227 11 213 574 57 409 1.84e-47 171
MS.gene85598.t1 AT5G19160 30.667 375 225 11 221 579 97 452 4.73e-47 171
MS.gene85598.t1 AT5G20680 29.657 408 224 13 189 570 87 457 7.40e-47 171
MS.gene85598.t1 AT5G20680 26.538 520 319 14 78 570 50 533 1.19e-46 172
MS.gene85598.t1 AT3G12060 30.055 366 228 9 223 577 196 544 1.74e-46 172
MS.gene85598.t1 AT5G20680 26.538 520 319 14 78 570 68 551 1.76e-46 172
MS.gene85598.t1 AT5G20680 26.538 520 319 14 78 570 68 551 1.76e-46 172
MS.gene85598.t1 AT5G20680 26.538 520 319 14 78 570 68 551 1.76e-46 172
MS.gene85598.t1 AT5G20680 26.538 520 319 14 78 570 68 551 1.76e-46 172
MS.gene85598.t1 AT3G62390 29.805 359 208 9 223 566 138 467 1.82e-46 170
MS.gene85598.t1 AT5G64020 30.890 382 200 17 223 570 57 408 2.41e-46 168
MS.gene85598.t1 AT5G06230 29.333 375 221 12 212 566 10 360 1.52e-42 157
MS.gene85598.t1 AT5G06230 29.333 375 221 12 212 566 51 401 3.04e-42 157
MS.gene85598.t1 AT2G40160 28.431 408 245 15 189 573 44 427 1.16e-41 156
MS.gene85598.t1 AT2G40160 28.501 407 244 15 189 572 44 426 2.92e-41 155
MS.gene85598.t1 AT2G30010 30.628 382 215 13 207 566 39 392 3.55e-41 154
MS.gene85598.t1 AT2G30010 30.628 382 215 13 207 566 82 435 4.76e-41 154
MS.gene85598.t1 AT3G14850 29.888 358 198 13 222 566 33 350 1.37e-40 151
MS.gene85598.t1 AT5G64470 28.184 369 215 14 223 570 55 394 7.62e-40 150
MS.gene85598.t1 AT3G11570 30.409 342 200 12 239 566 98 415 8.25e-40 150
MS.gene85598.t1 AT2G40320 28.871 381 232 16 204 567 61 419 1.09e-39 150
MS.gene85598.t1 AT2G30900 29.577 355 203 12 223 566 43 361 1.63e-39 148
MS.gene85598.t1 AT3G54260 30.556 360 202 12 223 570 51 374 6.73e-39 147
MS.gene85598.t1 AT5G64470 28.108 370 220 14 223 570 55 400 9.68e-39 147
MS.gene85598.t1 AT3G11030 27.123 365 241 12 213 567 96 445 1.14e-38 148
MS.gene85598.t1 AT2G31110 30.110 362 209 14 213 566 33 358 1.81e-37 142
MS.gene85598.t1 AT1G29050 28.283 396 237 12 185 570 20 378 4.67e-37 142
MS.gene85598.t1 AT1G48880 27.614 373 223 11 212 573 106 442 6.32e-37 143
MS.gene85598.t1 AT2G14530 27.461 386 227 15 209 570 50 406 1.33e-36 141
MS.gene85598.t1 AT5G01620 29.058 382 219 17 211 570 98 449 3.07e-36 141
MS.gene85598.t1 AT5G01620 29.058 382 219 17 211 570 98 449 3.07e-36 141
MS.gene85598.t1 AT5G01620 29.058 382 219 17 211 570 106 457 3.12e-36 141
MS.gene85598.t1 AT2G37720 27.224 371 210 13 223 567 143 479 5.97e-36 141
MS.gene85598.t1 AT2G34070 28.099 363 206 14 221 570 63 383 2.45e-35 137
MS.gene85598.t1 AT2G38320 27.816 435 250 20 163 570 7 404 1.28e-34 135
MS.gene85598.t1 AT2G40150 27.957 372 229 12 223 573 71 424 2.98e-34 135
MS.gene85598.t1 AT5G01360 26.776 366 221 12 223 567 36 375 8.25e-34 132
MS.gene85598.t1 AT5G01360 26.776 366 221 12 223 567 92 431 1.69e-33 133
MS.gene85598.t1 AT2G42570 26.913 379 235 11 198 570 22 364 2.09e-33 131
MS.gene85598.t1 AT5G58600 28.108 370 215 12 220 570 63 400 2.67e-33 132
MS.gene85598.t1 AT1G78710 28.184 369 209 16 212 566 26 352 1.17e-31 126
MS.gene85598.t1 AT3G55990 27.586 377 216 15 223 572 140 486 2.95e-30 124
MS.gene85598.t1 AT3G62390 54.639 97 43 1 223 318 138 234 1.28e-29 121
MS.gene85598.t1 AT5G20590 33.065 248 144 7 222 456 140 378 2.98e-29 120
MS.gene85598.t1 AT5G19160 29.675 246 155 6 221 455 97 335 2.21e-28 116
MS.gene85598.t1 AT2G38320 27.907 344 193 16 253 570 7 321 4.99e-27 112
MS.gene85598.t1 AT3G06080 29.644 253 148 7 221 456 101 340 6.19e-27 112
MS.gene85598.t1 AT2G40160 29.680 219 146 5 189 401 44 260 1.09e-26 111
MS.gene85598.t1 AT5G64470 29.057 265 152 10 223 466 55 304 1.18e-25 108
MS.gene85598.t1 AT5G64470 29.057 265 152 10 223 466 55 304 1.51e-25 107
MS.gene85598.t1 AT2G31110 35.484 186 105 6 215 394 35 211 4.30e-25 105
MS.gene85598.t1 AT2G30900 34.286 175 98 7 223 390 43 207 4.46e-25 105
MS.gene85598.t1 AT5G06230 28.464 267 161 9 212 458 51 307 2.78e-22 98.2
MS.gene85598.t1 AT1G78710 41.441 111 56 3 208 311 10 118 2.20e-21 95.5
MS.gene85598.t1 AT5G58600 44.086 93 51 1 220 311 63 155 5.08e-21 94.0
MS.gene85598.t1 AT3G14850 26.224 286 158 13 294 566 2 247 1.00e-14 74.7
MS.gene85598.t1 AT2G34070 24.825 286 160 14 294 566 2 245 3.50e-12 67.4

Find 169 sgRNAs with CRISPR-Local

Find 385 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACGTTTAGTGATCTTATT+TGG 0.114557 1.3:-55185372 None:intergenic
TCAGGCTTCTTTACTGATTC+TGG 0.163701 1.3:-55181322 None:intergenic
AGGACAACCACGTCAAAATT+TGG 0.190228 1.3:-55184904 None:intergenic
TCAATAGAAGCAACATTTAT+AGG 0.210296 1.3:-55180881 None:intergenic
TAAATCGAAGTTGACGTTAA+TGG 0.229432 1.3:+55185287 MS.gene85598:CDS
ATGGTCATCCTGGGCCTTAC+AGG 0.251182 1.3:+55185340 MS.gene85598:CDS
ACCATCCAAGACCACTTTCT+TGG 0.251239 1.3:+55180720 MS.gene85598:CDS
CCGATTGGTGCCACGTTTCA+TGG 0.257508 1.3:+55180809 MS.gene85598:CDS
CCAAACGAAGTCGTGGGTTT+TGG 0.277729 1.3:-55181067 None:intergenic
TGTGGCGGTGGCCTTCCATC+TGG 0.278954 1.3:-55185396 None:intergenic
TGCCCCTGACCCGAAGTTAA+TGG 0.289127 1.3:+55184873 MS.gene85598:CDS
TTACGATTTCCCCGATTCTT+TGG 0.311708 1.3:-55184724 None:intergenic
GCATGACCCACCGGTGTTCC+AGG 0.323014 1.3:-55185151 None:intergenic
GACGTGGTTGTCCTTTCTTC+CGG 0.330743 1.3:+55184913 MS.gene85598:CDS
TCTAATACCACCCGTCAAAT+TGG 0.331043 1.3:-55181194 None:intergenic
ATGCATGAGCAACAGGTTAC+AGG 0.340638 1.3:+55185234 MS.gene85598:CDS
GGGAAGACCTTGGCTTTCAT+TGG 0.343839 1.3:+55183654 MS.gene85598:CDS
AACTTCAAGTGCAACTGTTT+CGG 0.351632 1.3:+55181150 MS.gene85598:CDS
TTAGTGATCTTATTTGGGTC+AGG 0.357250 1.3:-55185366 None:intergenic
CACGTTTAGTGATCTTATTT+GGG 0.366019 1.3:-55185371 None:intergenic
TACACAACATTGATTCCATT+TGG 0.372534 1.3:-55183695 None:intergenic
GCCTGTTGCACTTGGTGAAC+TGG 0.373204 1.3:+55185188 MS.gene85598:CDS
TTGTCCTTTCTTCCGGTCAT+TGG 0.374487 1.3:+55184920 MS.gene85598:CDS
TCTGAGAAGTTAGATGTATC+TGG 0.378480 1.3:+55180854 MS.gene85598:CDS
GTGATCTGTACCATGGGAAT+TGG 0.379220 1.3:+55183457 MS.gene85598:CDS
TGCAGAATTGCCAGGGTAAT+GGG 0.379873 1.3:+55183538 MS.gene85598:CDS
CCAAAACCCACGACTTCGTT+TGG 0.382102 1.3:+55181067 MS.gene85598:CDS
TGCTTGCACTGGTGCATGCC+AGG 0.387421 1.3:+55185423 MS.gene85598:CDS
TTCATCTGCTTGGACTTGTC+TGG 0.388587 1.3:-55185003 None:intergenic
GGACAACCACGTCAAAATTT+GGG 0.391976 1.3:-55184903 None:intergenic
TTCCAAGACAAGTTCATTCC+AGG 0.392884 1.3:-55185457 None:intergenic
ACCAGTTCACCAAGTGCAAC+AGG 0.396065 1.3:-55185189 None:intergenic
GGATATGTTCCATTAACTTC+GGG 0.398865 1.3:-55184882 None:intergenic
TGTTCCATTAACTTCGGGTC+AGG 0.405587 1.3:-55184877 None:intergenic
TGCCGGTTCTTCCAATTTGA+CGG 0.407032 1.3:+55181183 MS.gene85598:CDS
CTGTAATGATAGTCCGGATA+TGG 0.407364 1.3:+55184776 MS.gene85598:CDS
TACCGACATGATGGTCATCC+TGG 0.409265 1.3:+55185330 MS.gene85598:CDS
GTTGTTGACCTTCATCTGCT+TGG 0.410264 1.3:-55185013 None:intergenic
AGATGGAAGGCCACCGCCAC+AGG 0.412614 1.3:+55185398 MS.gene85598:CDS
TTTGGGTCAGGGCTCCTGTA+AGG 0.416109 1.3:-55185354 None:intergenic
TGGTCATTTGAAACCGTAGA+AGG 0.416358 1.3:-55181229 None:intergenic
CCGGCATTGGATGCGTTGTC+AGG 0.417008 1.3:-55181340 None:intergenic
CTGACAAAGATTATGAGAAT+TGG 0.417959 1.3:+55183565 MS.gene85598:CDS
ACCCGTCAAATTGGAAGAAC+CGG 0.418466 1.3:-55181185 None:intergenic
ATGCAGAATTGCCAGGGTAA+TGG 0.425214 1.3:+55183537 MS.gene85598:CDS
CTCATAATGATCTGGTGAAT+AGG 0.425680 1.3:-55185121 None:intergenic
ACAATCCAAGAAAGTGGTCT+TGG 0.428546 1.3:-55180725 None:intergenic
AATGCCGGTTCAGTTAATTC+AGG 0.433625 1.3:+55181355 MS.gene85598:CDS
AAATACGATGCATGAGCAAC+AGG 0.433872 1.3:+55185227 MS.gene85598:CDS
GTGGCGGTGGCCTTCCATCT+GGG 0.434365 1.3:-55185395 None:intergenic
TATCTTGAATAACGAGATAG+TGG 0.435893 1.3:+55184963 MS.gene85598:CDS
GAAGTCGTGGAGGTTTCCTT+TGG 0.438635 1.3:-55181274 None:intergenic
AACACCGGTGGGTCATGCAC+TGG 0.441439 1.3:+55185156 MS.gene85598:CDS
ACTTGTGAATTTGCTTGAGC+AGG 0.443123 1.3:-55181121 None:intergenic
CAATTCTCATAATCTTTGTC+AGG 0.443282 1.3:-55183564 None:intergenic
TTCTGCATCTGTGTCAATAC+AGG 0.448339 1.3:-55183522 None:intergenic
TGAATTAACTGAACCGGCAT+TGG 0.450829 1.3:-55181353 None:intergenic
AGGTAGAGGTACCAAAGAAT+CGG 0.451259 1.3:+55184713 MS.gene85598:intron
ATCATTATGAGGGTGGAGCC+TGG 0.451662 1.3:+55185133 MS.gene85598:CDS
GCCGGTTCTTCCAATTTGAC+GGG 0.453765 1.3:+55181184 MS.gene85598:CDS
CTTGGTGAACTGGTAGAAAA+CGG 0.458499 1.3:+55185198 MS.gene85598:CDS
GGTAGAGGTACCAAAGAATC+GGG 0.459715 1.3:+55184714 MS.gene85598:intron
TACCTGGAATGAACTTGTCT+TGG 0.460482 1.3:+55185455 MS.gene85598:CDS
ATTGCGAGACCTTTGTAAGT+TGG 0.460750 1.3:-55185090 None:intergenic
TTCAGTAGCTCGAAACCAAA+TGG 0.465522 1.3:+55183680 MS.gene85598:CDS
GGGATATGTTCCATTAACTT+CGG 0.466003 1.3:-55184883 None:intergenic
CCATGAAACGTGGCACCAAT+CGG 0.466696 1.3:-55180809 None:intergenic
TGCCAGGTCCTGTCGATACC+TGG 0.468729 1.3:+55185439 MS.gene85598:CDS
TCAGGGCTCCTGTAAGGCCC+AGG 0.476391 1.3:-55185348 None:intergenic
TGATCTGTACCATGGGAATT+GGG 0.480897 1.3:+55183458 MS.gene85598:CDS
GTAACCTGAATTAACTGAAC+CGG 0.483044 1.3:-55181359 None:intergenic
TTCCGAGTTTGAAGTGGTAT+CGG 0.483511 1.3:-55180966 None:intergenic
ACAAAGGTCTCGCAATTGTT+CGG 0.487631 1.3:+55185097 MS.gene85598:CDS
TTGAGCAGGCAAACTAGTAT+TGG 0.488542 1.3:-55181107 None:intergenic
GAGGGTGGAGCCTGGAACAC+CGG 0.488669 1.3:+55185141 MS.gene85598:CDS
GCAACTGTTTCGGTTGAAGC+AGG 0.488742 1.3:+55181160 MS.gene85598:CDS
CAAACCAATGACCGGAAGAA+AGG 0.492984 1.3:-55184924 None:intergenic
GACACAGATGCAGAATTGCC+AGG 0.493240 1.3:+55183530 MS.gene85598:CDS
TGCAAGCAATCCTGTGGCGG+TGG 0.493660 1.3:-55185408 None:intergenic
TTGGTGAACTGGTAGAAAAC+GGG 0.495173 1.3:+55185199 MS.gene85598:CDS
GGTGGAGCCTGGAACACCGG+TGG 0.496840 1.3:+55185144 MS.gene85598:CDS
GCTCCACCCTCATAATGATC+TGG 0.502988 1.3:-55185129 None:intergenic
TCGTGGGATGTCACACTGAA+AGG 0.503362 1.3:-55183598 None:intergenic
TAGTGATCTTATTTGGGTCA+GGG 0.503772 1.3:-55185365 None:intergenic
GTTCTTGTTTCATCGCCGAT+TGG 0.503785 1.3:+55180794 MS.gene85598:CDS
GAATTGGGTACATGATCCAT+TGG 0.511270 1.3:+55183473 MS.gene85598:CDS
ATCACTAAACGTGGCCCAGA+TGG 0.514346 1.3:+55185381 MS.gene85598:CDS
GTTCCATTAACTTCGGGTCA+GGG 0.514562 1.3:-55184876 None:intergenic
CGCCACAGGATTGCTTGCAC+TGG 0.514703 1.3:+55185412 MS.gene85598:CDS
GTTTCGGTTGAAGCAGGTGC+CGG 0.515679 1.3:+55181166 MS.gene85598:CDS
CAAGCCATGAGGACCATATC+CGG 0.516438 1.3:-55184789 None:intergenic
CCGCATCTGTAATGATAGTC+CGG 0.516536 1.3:+55184770 MS.gene85598:CDS
CGTGGGATGTCACACTGAAA+GGG 0.519480 1.3:-55183597 None:intergenic
CTATTCACCAGATCATTATG+AGG 0.520724 1.3:+55185122 MS.gene85598:CDS
TGGAGCTTATCCACACCAGC+TGG 0.522748 1.3:-55184844 None:intergenic
AAAACAACAATCCAAGAAAG+TGG 0.527041 1.3:-55180731 None:intergenic
AGATAGTGGGAGGACAGTTA+TGG 0.528309 1.3:+55184977 MS.gene85598:CDS
TTAGATTCACAATCTTCCAC+TGG 0.528340 1.3:+55180917 MS.gene85598:CDS
CCAGCTGGAGCATAATCAAA+TGG 0.539143 1.3:-55184829 None:intergenic
CATGTATTGTTTGTGTAAAG+TGG 0.539629 1.3:-55183498 None:intergenic
AATGTTGTGTATTCTGTGGC+AGG 0.542105 1.3:+55183707 MS.gene85598:CDS
GTTTGGCAATAGTGTAGATA+CGG 0.543709 1.3:+55181084 MS.gene85598:CDS
TCGGGTCAGGGGCATCAAGA+TGG 0.543725 1.3:-55184864 None:intergenic
TTCCAGGTATCGACAGGACC+TGG 0.544847 1.3:-55185441 None:intergenic
TTCCATTAACTTCGGGTCAG+GGG 0.544917 1.3:-55184875 None:intergenic
ACACCGGTGGGTCATGCACT+GGG 0.546027 1.3:+55185157 MS.gene85598:CDS
CCTGACAACGCATCCAATGC+CGG 0.546333 1.3:+55181340 MS.gene85598:CDS
AACCGATACCACTTCAAACT+CGG 0.546807 1.3:+55180964 MS.gene85598:CDS
GTCTACTTCCGAGTTTGAAG+TGG 0.548097 1.3:-55180972 None:intergenic
CTTCCCAGTGCATGACCCAC+CGG 0.549025 1.3:-55185160 None:intergenic
CCATTTGATTATGCTCCAGC+TGG 0.552386 1.3:+55184829 MS.gene85598:CDS
CTATAATCACACCACCGGAC+TGG 0.556126 1.3:-55181249 None:intergenic
GCGTTTCAATACCGACATGA+TGG 0.557601 1.3:+55185321 MS.gene85598:CDS
ACGGTTTCAAATGACCAGTC+CGG 0.563196 1.3:+55181235 MS.gene85598:CDS
GCTGATGAGAGGGAAGACCT+TGG 0.564264 1.3:+55183644 MS.gene85598:CDS
TCCAAGAAAGTGGTCTTGGA+TGG 0.565929 1.3:-55180721 None:intergenic
AATTGGGTACATGATCCATT+GGG 0.567737 1.3:+55183474 MS.gene85598:CDS
AGACAAGTCCAAGCAGATGA+AGG 0.568935 1.3:+55185005 MS.gene85598:CDS
GTCATTTGAAACCGTAGAAG+GGG 0.570128 1.3:-55181227 None:intergenic
TGTCAGGCCTCCCATTACCC+TGG 0.571687 1.3:-55183548 None:intergenic
ACCGACATGATGGTCATCCT+GGG 0.580029 1.3:+55185331 MS.gene85598:CDS
AGTTCATTCCAGGTATCGAC+AGG 0.581656 1.3:-55185447 None:intergenic
GTGGAGCCTGGAACACCGGT+GGG 0.582467 1.3:+55185145 MS.gene85598:CDS
ACTATTGCCAAACGAAGTCG+TGG 0.582517 1.3:-55181074 None:intergenic
GAAGATTGTGAATCTAAAGA+CGG 0.584346 1.3:-55180911 None:intergenic
GGTCATTTGAAACCGTAGAA+GGG 0.584794 1.3:-55181228 None:intergenic
AAGATTATGAGAATTGGCGA+TGG 0.585427 1.3:+55183571 MS.gene85598:CDS
AAGGTTAAGCCTGTTGCACT+TGG 0.585969 1.3:+55185180 MS.gene85598:CDS
CTAAACGTGGCCCAGATGGA+AGG 0.586407 1.3:+55185385 MS.gene85598:CDS
TGAATCTCCAATGAAAGCCA+AGG 0.588688 1.3:-55183661 None:intergenic
TTCTGGAACAGCTGTTAATG+TGG 0.596453 1.3:-55181305 None:intergenic
TGTGGAATTATCAGAAGTCG+TGG 0.596523 1.3:-55181287 None:intergenic
CTGCTTAGCAAACCAATGAC+CGG 0.598348 1.3:-55184932 None:intergenic
TGATTATGCTCCAGCTGGTG+TGG 0.603990 1.3:+55184834 MS.gene85598:CDS
TGGTGTGATTATAGCACCAA+AGG 0.606346 1.3:+55181258 MS.gene85598:CDS
TAGTCCGGATATGGTCCTCA+TGG 0.607259 1.3:+55184785 MS.gene85598:CDS
CACCAGTGCAAGCAATCCTG+TGG 0.608621 1.3:-55185414 None:intergenic
TTATTGACATCCTCGCTCGT+TGG 0.611402 1.3:-55181022 None:intergenic
CGGTGGGTCATGCACTGGGA+AGG 0.611769 1.3:+55185161 MS.gene85598:CDS
GGTTCTTCCAATTTGACGGG+TGG 0.614017 1.3:+55181187 MS.gene85598:CDS
CAATAGTAAGTCTAGTTCTG+TGG 0.616322 1.3:+55180994 MS.gene85598:CDS
TGGTGCTATAATCACACCAC+CGG 0.617286 1.3:-55181254 None:intergenic
CAGTGCAAGCAATCCTGTGG+CGG 0.618270 1.3:-55185411 None:intergenic
TTTGTGTAAAGTGGTCCCAA+TGG 0.618822 1.3:-55183489 None:intergenic
TAGTGGGAGGACAGTTATGG+TGG 0.622969 1.3:+55184980 MS.gene85598:CDS
ATCATCAAGAGAGAATATGA+AGG 0.626533 1.3:+55185480 MS.gene85598:CDS
TCACCAGATCATTATGAGGG+TGG 0.628408 1.3:+55185126 MS.gene85598:CDS
ATTGCTATCACTAGTACCAG+TGG 0.629797 1.3:-55180933 None:intergenic
TAGGCTGTGATCTGTACCAT+GGG 0.633271 1.3:+55183451 MS.gene85598:intron
GCTACACATCCAACTTACAA+AGG 0.636013 1.3:+55185081 MS.gene85598:CDS
ACACAGATGCAGAATTGCCA+GGG 0.636339 1.3:+55183531 MS.gene85598:CDS
ATCAAGAGAGAATATGAAGG+TGG 0.637532 1.3:+55185483 MS.gene85598:CDS
ATCTTGAATAACGAGATAGT+GGG 0.646579 1.3:+55184964 MS.gene85598:CDS
TATTCACCAGATCATTATGA+GGG 0.649367 1.3:+55185123 MS.gene85598:CDS
TGTGGAACTTCCAACGAGCG+AGG 0.651120 1.3:+55181012 MS.gene85598:CDS
TTGAATAACGAGATAGTGGG+AGG 0.661822 1.3:+55184967 MS.gene85598:CDS
CCGGACTATCATTACAGATG+CGG 0.665544 1.3:-55184770 None:intergenic
TCATTTGAAACCGTAGAAGG+GGG 0.666824 1.3:-55181226 None:intergenic
CCAAATAAGATCACTAAACG+TGG 0.667609 1.3:+55185372 MS.gene85598:CDS
GATCATGTACCCAATTCCCA+TGG 0.672337 1.3:-55183467 None:intergenic
GTTTCAAATGACCAGTCCGG+TGG 0.677402 1.3:+55181238 MS.gene85598:CDS
GCCCAGGATGACCATCATGT+CGG 0.678895 1.3:-55185332 None:intergenic
GTAGGCTGTGATCTGTACCA+TGG 0.685036 1.3:+55183450 MS.gene85598:intron
CTATTGCCAAACGAAGTCGT+GGG 0.691219 1.3:-55181073 None:intergenic
GGAATTATCAGAAGTCGTGG+AGG 0.703782 1.3:-55181284 None:intergenic
AATCAATGTTGTGTATTCTG+TGG 0.709727 1.3:+55183703 MS.gene85598:CDS
AGAATTGCCAGGGTAATGGG+AGG 0.713659 1.3:+55183541 MS.gene85598:CDS
CGTCACTTTGACAAGCCATG+AGG 0.722152 1.3:-55184800 None:intergenic
GTAGAGGTACCAAAGAATCG+GGG 0.738063 1.3:+55184715 MS.gene85598:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAAAAAGAGAATAT+GGG - chr1.3:55181759-55181778 None:intergenic 10.0%
!! TAAAAATTAAAAAGAGAATA+TGG - chr1.3:55181760-55181779 None:intergenic 10.0%
!!! TTTCTTTTTATTAACATTTA+TGG - chr1.3:55184124-55184143 None:intergenic 10.0%
!! AAAAATTTCTTATTGTAAAC+AGG + chr1.3:55183354-55183373 MS.gene85598:intron 15.0%
!! AACAAATATAAAATACAAAC+AGG - chr1.3:55184017-55184036 None:intergenic 15.0%
!! ATAAAATGATTTAGAGATTA+TGG + chr1.3:55183774-55183793 MS.gene85598:intron 15.0%
!! CATATAAACATTTCTTTATT+AGG + chr1.3:55184320-55184339 MS.gene85598:intron 15.0%
!! CTCTTATTATTATTGTATTA+TGG + chr1.3:55184068-55184087 MS.gene85598:intron 15.0%
!! TTAGATAAAATAGTAATGTT+GGG - chr1.3:55181828-55181847 None:intergenic 15.0%
!! TTATTATTATTAGGTAAAAG+AGG + chr1.3:55184189-55184208 MS.gene85598:intron 15.0%
!!! ATATGCAAAGATATTATTTT+AGG + chr1.3:55184746-55184765 MS.gene85598:CDS 15.0%
!!! GTTTGTATTTTATATTTGTT+TGG + chr1.3:55184017-55184036 MS.gene85598:intron 15.0%
!!! TATTTTATATTTGTTTGGTT+TGG + chr1.3:55184022-55184041 MS.gene85598:intron 15.0%
!! ATTTCTTTATTAGGTAAAAG+AGG + chr1.3:55184329-55184348 MS.gene85598:intron 20.0%
!! GTTAGATAAAATAGTAATGT+TGG - chr1.3:55181829-55181848 None:intergenic 20.0%
!! TAGATAAAATAGTAATGTTG+GGG - chr1.3:55181827-55181846 None:intergenic 20.0%
!! TATTCATTTACACATACATA+GGG + chr1.3:55184598-55184617 MS.gene85598:intron 20.0%
!!! AAAAGACTAGTTTATTAAGT+GGG + chr1.3:55182514-55182533 MS.gene85598:intron 20.0%
!!! ACATGCATTTTTCTTTTTAT+TGG - chr1.3:55184459-55184478 None:intergenic 20.0%
!!! ACTTAATAAACTAGTCTTTT+GGG - chr1.3:55182514-55182533 None:intergenic 20.0%
!!! ATTTGATCCTAGAAAATTTT+TGG + chr1.3:55183620-55183639 MS.gene85598:CDS 20.0%
!!! CTTTTTATTGGAATATACTT+TGG - chr1.3:55184447-55184466 None:intergenic 20.0%
!!! TGATGTATAATTCAAAGTTT+TGG + chr1.3:55183176-55183195 MS.gene85598:intron 20.0%
! AAAACCATTTCATTATGAAC+CGG - chr1.3:55184546-55184565 None:intergenic 25.0%
! AAAAGAGATATCCTTTACAA+AGG - chr1.3:55181690-55181709 None:intergenic 25.0%
! AAAGAGATATCCTTTACAAA+GGG - chr1.3:55181689-55181708 None:intergenic 25.0%
! AAGTAAATGAGAATGAAATC+AGG + chr1.3:55184242-55184261 MS.gene85598:intron 25.0%
! ATAGTAGTACAAAACAAGAA+TGG - chr1.3:55181444-55181463 None:intergenic 25.0%
! ATTATGAACTCTCTAACAAT+AGG + chr1.3:55183845-55183864 MS.gene85598:intron 25.0%
! ATTATTAGGTAAAAGAGGAT+GGG + chr1.3:55184194-55184213 MS.gene85598:intron 25.0%
! ATTTAGTTGAGTACCTTAAT+CGG + chr1.3:55182416-55182435 MS.gene85598:intron 25.0%
! CAAAGACCAAAATAAAATAG+AGG - chr1.3:55182141-55182160 None:intergenic 25.0%
! GTATTCATTTACACATACAT+AGG + chr1.3:55184597-55184616 MS.gene85598:intron 25.0%
! TAGAAGCTTAACTGAAAATA+TGG + chr1.3:55184683-55184702 MS.gene85598:intron 25.0%
! TATTATTAGGTAAAAGAGGA+TGG + chr1.3:55184193-55184212 MS.gene85598:intron 25.0%
! TCAATAGAAGCAACATTTAT+AGG - chr1.3:55180884-55180903 None:intergenic 25.0%
! TTAAAAAGAGAATATGGGAA+TGG - chr1.3:55181754-55181773 None:intergenic 25.0%
! TTAATTAGCAACTGAATCAA+CGG + chr1.3:55182811-55182830 MS.gene85598:intron 25.0%
! TTATGAACTCTCTAACAATA+GGG + chr1.3:55183846-55183865 MS.gene85598:intron 25.0%
! TTTAAAAAACAAGCTAGTGT+AGG - chr1.3:55181400-55181419 None:intergenic 25.0%
!! CAACATTTCTTTTCTTAGTT+TGG + chr1.3:55184396-55184415 MS.gene85598:intron 25.0%
!! CTTTGTTTCAGTTATCAATT+GGG + chr1.3:55182156-55182175 MS.gene85598:intron 25.0%
!! TCTTTGTTTCAGTTATCAAT+TGG + chr1.3:55182155-55182174 MS.gene85598:intron 25.0%
!!! AATTTTGCTTTTGTACTTCT+GGG + chr1.3:55182838-55182857 MS.gene85598:intron 25.0%
!!! ACGTTTCATGGATATTTTTA+CGG + chr1.3:55180821-55180840 MS.gene85598:CDS 25.0%
!!! CAAAAGACTAGTTTATTAAG+TGG + chr1.3:55182513-55182532 MS.gene85598:intron 25.0%
!!! CACTTAATAAACTAGTCTTT+TGG - chr1.3:55182515-55182534 None:intergenic 25.0%
!!! CACTTTTATCTAGTTTATGT+GGG + chr1.3:55182278-55182297 MS.gene85598:intron 25.0%
!!! CTTGTTTTTTAAATGCTTCA+TGG + chr1.3:55181407-55181426 MS.gene85598:intron 25.0%
!!! GAGTAACCTCTATTTTATTT+TGG + chr1.3:55182132-55182151 MS.gene85598:intron 25.0%
!!! GCATCAAAAATTGTTTTATG+TGG + chr1.3:55184495-55184514 MS.gene85598:intron 25.0%
!!! GTATAATTCAAAGTTTTGGT+TGG + chr1.3:55183180-55183199 MS.gene85598:intron 25.0%
!!! TAATTTTGCTTTTGTACTTC+TGG + chr1.3:55182837-55182856 MS.gene85598:intron 25.0%
AAAACAACAATCCAAGAAAG+TGG - chr1.3:55180734-55180753 None:intergenic 30.0%
AAACCATTTCATTATGAACC+GGG - chr1.3:55184545-55184564 None:intergenic 30.0%
AAATGCAGAAATTGTTGTAC+TGG - chr1.3:55184286-55184305 None:intergenic 30.0%
AATCAATGTTGTGTATTCTG+TGG + chr1.3:55183703-55183722 MS.gene85598:CDS 30.0%
ATCATCAAGAGAGAATATGA+AGG + chr1.3:55185480-55185499 MS.gene85598:CDS 30.0%
ATCTTGAATAACGAGATAGT+GGG + chr1.3:55184964-55184983 MS.gene85598:CDS 30.0%
CAATGACAGCATCATTTATT+AGG + chr1.3:55182463-55182482 MS.gene85598:intron 30.0%
CAATTCTCATAATCTTTGTC+AGG - chr1.3:55183567-55183586 None:intergenic 30.0%
CATGTATTGTTTGTGTAAAG+TGG - chr1.3:55183501-55183520 None:intergenic 30.0%
CCAAAATTCCAGTAGATAAA+AGG - chr1.3:55182571-55182590 None:intergenic 30.0%
CTGACAAAGATTATGAGAAT+TGG + chr1.3:55183565-55183584 MS.gene85598:CDS 30.0%
GAAGATTGTGAATCTAAAGA+CGG - chr1.3:55180914-55180933 None:intergenic 30.0%
GGAACGTAATCAAATTGATT+TGG + chr1.3:55184350-55184369 MS.gene85598:intron 30.0%
GTAAAAATATCCATGAAACG+TGG - chr1.3:55180822-55180841 None:intergenic 30.0%
GTACTAAAAACAAGCTAAAG+TGG - chr1.3:55182105-55182124 None:intergenic 30.0%
GTATTACATGAAAAGTCTGA+GGG + chr1.3:55181914-55181933 MS.gene85598:intron 30.0%
TAAATCGAAGTTGACGTTAA+TGG + chr1.3:55185287-55185306 MS.gene85598:CDS 30.0%
TATCAATTGGGCTAATTAAG+TGG + chr1.3:55182168-55182187 MS.gene85598:intron 30.0%
TATCTTGAATAACGAGATAG+TGG + chr1.3:55184963-55184982 MS.gene85598:CDS 30.0%
TATTCACCAGATCATTATGA+GGG + chr1.3:55185123-55185142 MS.gene85598:CDS 30.0%
TATTGGAATATACTTTGGCT+GGG - chr1.3:55184442-55184461 None:intergenic 30.0%
TCTAACTTCAAACTGTGATT+AGG + chr1.3:55181843-55181862 MS.gene85598:intron 30.0%
TGTATTACATGAAAAGTCTG+AGG + chr1.3:55181913-55181932 MS.gene85598:intron 30.0%
TGTATTATTGCAAACTGAAC+TGG + chr1.3:55181630-55181649 MS.gene85598:intron 30.0%
TTATTAGGTAAAAGAGGATG+GGG + chr1.3:55184195-55184214 MS.gene85598:intron 30.0%
TTATTGGAATATACTTTGGC+TGG - chr1.3:55184443-55184462 None:intergenic 30.0%
TTCTTATTGTAAACAGGTGA+CGG + chr1.3:55183360-55183379 MS.gene85598:intron 30.0%
TTTACAAAGGGAAAACTCTT+GGG - chr1.3:55181677-55181696 None:intergenic 30.0%
TTTCATTCTCATTTACTTCC+TGG - chr1.3:55184240-55184259 None:intergenic 30.0%
! AGCTTCTAGCTATGATAAAA+TGG - chr1.3:55184671-55184690 None:intergenic 30.0%
! ATCAGCTCCAAAAATTTTCT+AGG - chr1.3:55183630-55183649 None:intergenic 30.0%
! CACGTTTAGTGATCTTATTT+GGG - chr1.3:55185374-55185393 None:intergenic 30.0%
! CCTTTTATCTACTGGAATTT+TGG + chr1.3:55182568-55182587 MS.gene85598:intron 30.0%
! CTTGTGTTGCTATATATGTT+TGG + chr1.3:55183284-55183303 MS.gene85598:intron 30.0%
! GTCAATTTGATAGTTGTACA+TGG - chr1.3:55181719-55181738 None:intergenic 30.0%
! TTCTTTACTTCACTCTCTTT+TGG + chr1.3:55181493-55181512 MS.gene85598:intron 30.0%
! TTGTCTATATTTTTCTCCGA+GGG + chr1.3:55182054-55182073 MS.gene85598:intron 30.0%
! TTTATTTGTAGCCTTTTCCA+TGG - chr1.3:55185271-55185290 None:intergenic 30.0%
!! CATGGATATTTTTACGGTAT+AGG + chr1.3:55180827-55180846 MS.gene85598:CDS 30.0%
!! GCACTTTTATCTAGTTTATG+TGG + chr1.3:55182277-55182296 MS.gene85598:intron 30.0%
!! TACACAACATTGATTCCATT+TGG - chr1.3:55183698-55183717 None:intergenic 30.0%
!!! AATAAACTAGTCTTTTGGGT+TGG - chr1.3:55182510-55182529 None:intergenic 30.0%
!!! AATTTTCTAGGATCAAATCG+TGG - chr1.3:55183618-55183637 None:intergenic 30.0%
!!! ATGAGTGTTTTTTTGTTAGG+TGG - chr1.3:55181875-55181894 None:intergenic 30.0%
!!! ATTTTCTAGGATCAAATCGT+GGG - chr1.3:55183617-55183636 None:intergenic 30.0%
!!! GCTATGAGTGTTTTTTTGTT+AGG - chr1.3:55181878-55181897 None:intergenic 30.0%
!!! TCTTGGATTGTTGTTTTAGT+AGG + chr1.3:55180737-55180756 MS.gene85598:CDS 30.0%
AACTTCAAGTGCAACTGTTT+CGG + chr1.3:55181150-55181169 MS.gene85598:CDS 35.0%
AAGAGAATATGGGAATGGAA+AGG - chr1.3:55181749-55181768 None:intergenic 35.0%
AAGATTATGAGAATTGGCGA+TGG + chr1.3:55183571-55183590 MS.gene85598:CDS 35.0%
AATTGGGTACATGATCCATT+GGG + chr1.3:55183474-55183493 MS.gene85598:CDS 35.0%
ATACCCGGTTCATAATGAAA+TGG + chr1.3:55184539-55184558 MS.gene85598:intron 35.0%
ATCAAATGCATGCTGTTGAA+CGG - chr1.3:55184572-55184591 None:intergenic 35.0%
ATCAAGAGAGAATATGAAGG+TGG + chr1.3:55185483-55185502 MS.gene85598:CDS 35.0%
ATTTCATTATGAACCGGGTA+TGG - chr1.3:55184540-55184559 None:intergenic 35.0%
CCAAATAAGATCACTAAACG+TGG + chr1.3:55185372-55185391 MS.gene85598:CDS 35.0%
CCACGTTTAGTGATCTTATT+TGG - chr1.3:55185375-55185394 None:intergenic 35.0%
CCATGCAAAACAGATCAATA+AGG - chr1.3:55183751-55183770 None:intergenic 35.0%
CTAAAAACAAGCTAAAGTGG+TGG - chr1.3:55182102-55182121 None:intergenic 35.0%
CTATTCACCAGATCATTATG+AGG + chr1.3:55185122-55185141 MS.gene85598:CDS 35.0%
CTCATAATGATCTGGTGAAT+AGG - chr1.3:55185124-55185143 None:intergenic 35.0%
CTGTTCATTTCAGTTTCTCT+AGG - chr1.3:55181581-55181600 None:intergenic 35.0%
CTTTACAAAGGGAAAACTCT+TGG - chr1.3:55181678-55181697 None:intergenic 35.0%
GGATATGTTCCATTAACTTC+GGG - chr1.3:55184885-55184904 None:intergenic 35.0%
GGGATATGTTCCATTAACTT+CGG - chr1.3:55184886-55184905 None:intergenic 35.0%
GGTGATTTATTAGGTAAACC+AGG + chr1.3:55184219-55184238 MS.gene85598:intron 35.0%
GTAACCTGAATTAACTGAAC+CGG - chr1.3:55181362-55181381 None:intergenic 35.0%
GTACTCAACTAAATACCGAT+TGG - chr1.3:55182410-55182429 None:intergenic 35.0%
GTTGAATTCACAGTAGTTTC+AGG + chr1.3:55183129-55183148 MS.gene85598:intron 35.0%
GTTTGGCAATAGTGTAGATA+CGG + chr1.3:55181084-55181103 MS.gene85598:CDS 35.0%
TATTAGGACTTATGTCCATG+AGG + chr1.3:55182479-55182498 MS.gene85598:intron 35.0%
TATTGTCCATTCTGTTGTGT+AGG + chr1.3:55183432-55183451 MS.gene85598:intron 35.0%
TCTGAGAAGTTAGATGTATC+TGG + chr1.3:55180854-55180873 MS.gene85598:CDS 35.0%
TTAGATTCACAATCTTCCAC+TGG + chr1.3:55180917-55180936 MS.gene85598:CDS 35.0%
TTCATGCATTTGAAGGATTC+AGG + chr1.3:55181979-55181998 MS.gene85598:intron 35.0%
! AAAATGCATGTTTTGCCTCT+TGG + chr1.3:55184468-55184487 MS.gene85598:intron 35.0%
! CAAGAGTTTTCCCTTTGTAA+AGG + chr1.3:55181676-55181695 MS.gene85598:intron 35.0%
! CCTTATTGATCTGTTTTGCA+TGG + chr1.3:55183748-55183767 MS.gene85598:intron 35.0%
! GGTATTGTCATGATGATGTT+TGG + chr1.3:55182741-55182760 MS.gene85598:intron 35.0%
! GTTGTCTATATTTTTCTCCG+AGG + chr1.3:55182053-55182072 MS.gene85598:intron 35.0%
! GTTTGAAATTACTCTGTGTG+AGG + chr1.3:55183398-55183417 MS.gene85598:intron 35.0%
! TAGTGATCTTATTTGGGTCA+GGG - chr1.3:55185368-55185387 None:intergenic 35.0%
! TTAGTGATCTTATTTGGGTC+AGG - chr1.3:55185369-55185388 None:intergenic 35.0%
!! ACATATCCCAAATTTTGACG+TGG + chr1.3:55184897-55184916 MS.gene85598:CDS 35.0%
!! CAATAGTAAGTCTAGTTCTG+TGG + chr1.3:55180994-55181013 MS.gene85598:CDS 35.0%
!!! AAATTTTTGGAGCTGATGAG+AGG + chr1.3:55183633-55183652 MS.gene85598:CDS 35.0%
!!! AATTTTTGGAGCTGATGAGA+GGG + chr1.3:55183634-55183653 MS.gene85598:CDS 35.0%
AAAAGACCAGTCCATTAGGT+TGG + chr1.3:55182226-55182245 MS.gene85598:intron 40.0%
AAATACGATGCATGAGCAAC+AGG + chr1.3:55185227-55185246 MS.gene85598:CDS 40.0%
AACCGATACCACTTCAAACT+CGG + chr1.3:55180964-55180983 MS.gene85598:CDS 40.0%
AATGTTGTGTATTCTGTGGC+AGG + chr1.3:55183707-55183726 MS.gene85598:CDS 40.0%
ACAAAGGTCTCGCAATTGTT+CGG + chr1.3:55185097-55185116 MS.gene85598:CDS 40.0%
ACAATCCAAGAAAGTGGTCT+TGG - chr1.3:55180728-55180747 None:intergenic 40.0%
ACTCAAAAGACCAGTCCATT+AGG + chr1.3:55182222-55182241 MS.gene85598:intron 40.0%
AGAATATGGGAATGGAAAGG+AGG - chr1.3:55181746-55181765 None:intergenic 40.0%
AGGACAACCACGTCAAAATT+TGG - chr1.3:55184907-55184926 None:intergenic 40.0%
AGTGAAACTGACGTAGAAGT+CGG - chr1.3:55182336-55182355 None:intergenic 40.0%
ATCCTTCAAATGCATGAAGC+AGG - chr1.3:55181977-55181996 None:intergenic 40.0%
ATGATGCTGTCATTGAGAGT+TGG - chr1.3:55182458-55182477 None:intergenic 40.0%
ATTGCGAGACCTTTGTAAGT+TGG - chr1.3:55185093-55185112 None:intergenic 40.0%
ATTGCTATCACTAGTACCAG+TGG - chr1.3:55180936-55180955 None:intergenic 40.0%
CAGAAAAAACCCACTTGAGT+TGG + chr1.3:55182915-55182934 MS.gene85598:intron 40.0%
CTACGTCAGTTTCACTCTAT+CGG + chr1.3:55182340-55182359 MS.gene85598:intron 40.0%
CTGTAATGATAGTCCGGATA+TGG + chr1.3:55184776-55184795 MS.gene85598:CDS 40.0%
CTTGGTGAACTGGTAGAAAA+CGG + chr1.3:55185198-55185217 MS.gene85598:CDS 40.0%
GAAACAACTTCTGCAACATG+TGG + chr1.3:55184158-55184177 MS.gene85598:intron 40.0%
GAATATACTTTGGCTGGGAA+AGG - chr1.3:55184437-55184456 None:intergenic 40.0%
GAATTGGGTACATGATCCAT+TGG + chr1.3:55183473-55183492 MS.gene85598:CDS 40.0%
GCTACACATCCAACTTACAA+AGG + chr1.3:55185081-55185100 MS.gene85598:CDS 40.0%
GGAAATCTCATTAAAGCCCT+CGG - chr1.3:55182073-55182092 None:intergenic 40.0%
GGACAACCACGTCAAAATTT+GGG - chr1.3:55184906-55184925 None:intergenic 40.0%
GTGCTTAGCAACAAGAAACA+AGG - chr1.3:55182779-55182798 None:intergenic 40.0%
TACATGAAAAGTCTGAGGGA+GGG + chr1.3:55181918-55181937 MS.gene85598:intron 40.0%
TACCTGGAATGAACTTGTCT+TGG + chr1.3:55185455-55185474 MS.gene85598:CDS 40.0%
TCTAATACCACCCGTCAAAT+TGG - chr1.3:55181197-55181216 None:intergenic 40.0%
TGAATCTCCAATGAAAGCCA+AGG - chr1.3:55183664-55183683 None:intergenic 40.0%
TGAATTAACTGAACCGGCAT+TGG - chr1.3:55181356-55181375 None:intergenic 40.0%
TGATCTGTACCATGGGAATT+GGG + chr1.3:55183458-55183477 MS.gene85598:CDS 40.0%
TGATGCTGTCATTGAGAGTT+GGG - chr1.3:55182457-55182476 None:intergenic 40.0%
TGATTCGATTATGCGTGTCT+CGG - chr1.3:55183935-55183954 None:intergenic 40.0%
TGGTGTGATTATAGCACCAA+AGG + chr1.3:55181258-55181277 MS.gene85598:CDS 40.0%
TGTGAGTGCATGTATATGTG+AGG - chr1.3:55183220-55183239 None:intergenic 40.0%
TGTGGAATTATCAGAAGTCG+TGG - chr1.3:55181290-55181309 None:intergenic 40.0%
TTACATGAAAAGTCTGAGGG+AGG + chr1.3:55181917-55181936 MS.gene85598:intron 40.0%
TTACGATTTCCCCGATTCTT+TGG - chr1.3:55184727-55184746 None:intergenic 40.0%
TTCAGTAGCTCGAAACCAAA+TGG + chr1.3:55183680-55183699 MS.gene85598:CDS 40.0%
TTCCAAGACAAGTTCATTCC+AGG - chr1.3:55185460-55185479 None:intergenic 40.0%
TTCTGCATCTGTGTCAATAC+AGG - chr1.3:55183525-55183544 None:intergenic 40.0%
TTGAGCAGGCAAACTAGTAT+TGG - chr1.3:55181110-55181129 None:intergenic 40.0%
TTGGTGAACTGGTAGAAAAC+GGG + chr1.3:55185199-55185218 MS.gene85598:CDS 40.0%
TTGTTAGACTTAAGCCCATG+AGG + chr1.3:55182191-55182210 MS.gene85598:intron 40.0%
TTTGGCGTGTTTGTTTGGTA+GGG + chr1.3:55182586-55182605 MS.gene85598:intron 40.0%
TTTGTGTAAAGTGGTCCCAA+TGG - chr1.3:55183492-55183511 None:intergenic 40.0%
! ACTTGTGAATTTGCTTGAGC+AGG - chr1.3:55181124-55181143 None:intergenic 40.0%
! ATTTTTGATGCAGTGCCAAG+AGG - chr1.3:55184486-55184505 None:intergenic 40.0%
! CTCTGTGTGAGGCTTTTAAT+TGG + chr1.3:55183409-55183428 MS.gene85598:intron 40.0%
! GGTCATTTGAAACCGTAGAA+GGG - chr1.3:55181231-55181250 None:intergenic 40.0%
! GTCATTTGAAACCGTAGAAG+GGG - chr1.3:55181230-55181249 None:intergenic 40.0%
! TCACAGTAGTTTCAGGTGTA+TGG + chr1.3:55183136-55183155 MS.gene85598:intron 40.0%
! TCATTTGAAACCGTAGAAGG+GGG - chr1.3:55181229-55181248 None:intergenic 40.0%
! TGGTCATTTGAAACCGTAGA+AGG - chr1.3:55181232-55181251 None:intergenic 40.0%
! TTCCGAGTTTGAAGTGGTAT+CGG - chr1.3:55180969-55180988 None:intergenic 40.0%
! TTTTGGCGTGTTTGTTTGGT+AGG + chr1.3:55182585-55182604 MS.gene85598:intron 40.0%
!! AATGCCGGTTCAGTTAATTC+AGG + chr1.3:55181355-55181374 MS.gene85598:CDS 40.0%
!! AGGTAGAGGTACCAAAGAAT+CGG + chr1.3:55184713-55184732 MS.gene85598:intron 40.0%
!! CTAGATAAAAGTGCTCAGTG+TGG - chr1.3:55182271-55182290 None:intergenic 40.0%
!! GGAATTTTGGCGTGTTTGTT+TGG + chr1.3:55182581-55182600 MS.gene85598:intron 40.0%
!! TCAGGCTTCTTTACTGATTC+TGG - chr1.3:55181325-55181344 None:intergenic 40.0%
!! TTCTGGAACAGCTGTTAATG+TGG - chr1.3:55181308-55181327 None:intergenic 40.0%
!! TTGAATAACGAGATAGTGGG+AGG + chr1.3:55184967-55184986 MS.gene85598:CDS 40.0%
!!! AATGGACTGGTCTTTTGAGT+TGG - chr1.3:55182222-55182241 None:intergenic 40.0%
!!! ATGGACTGGTCTTTTGAGTT+GGG - chr1.3:55182221-55182240 None:intergenic 40.0%
AACTGAAGAACCCCCTTCTA+CGG + chr1.3:55181216-55181235 MS.gene85598:CDS 45.0%
AAGGTTAAGCCTGTTGCACT+TGG + chr1.3:55185180-55185199 MS.gene85598:CDS 45.0%
ACACAGATGCAGAATTGCCA+GGG + chr1.3:55183531-55183550 MS.gene85598:CDS 45.0%
ACCATCCAAGACCACTTTCT+TGG + chr1.3:55180720-55180739 MS.gene85598:CDS 45.0%
ACCCGTCAAATTGGAAGAAC+CGG - chr1.3:55181188-55181207 None:intergenic 45.0%
ACGGTTTCAAATGACCAGTC+CGG + chr1.3:55181235-55181254 MS.gene85598:CDS 45.0%
ACTATTGCCAAACGAAGTCG+TGG - chr1.3:55181077-55181096 None:intergenic 45.0%
AGACAAGTCCAAGCAGATGA+AGG + chr1.3:55185005-55185024 MS.gene85598:CDS 45.0%
AGTGTGAGTGTGTATGTGTG+CGG - chr1.3:55183248-55183267 None:intergenic 45.0%
ATCAAACCTGAGACCTTGAG+AGG - chr1.3:55182976-55182995 None:intergenic 45.0%
ATGCAGAATTGCCAGGGTAA+TGG + chr1.3:55183537-55183556 MS.gene85598:CDS 45.0%
ATGCATGAGCAACAGGTTAC+AGG + chr1.3:55185234-55185253 MS.gene85598:CDS 45.0%
CAAACCAATGACCGGAAGAA+AGG - chr1.3:55184927-55184946 None:intergenic 45.0%
CAACACAAGTGTGAGTGTGT+CGG - chr1.3:55183273-55183292 None:intergenic 45.0%
CCAGCTGGAGCATAATCAAA+TGG - chr1.3:55184832-55184851 None:intergenic 45.0%
CCAGGACAGAAGTAATGGTT+CGG - chr1.3:55182664-55182683 None:intergenic 45.0%
CCATTTGATTATGCTCCAGC+TGG + chr1.3:55184829-55184848 MS.gene85598:CDS 45.0%
CCGCATCTGTAATGATAGTC+CGG + chr1.3:55184770-55184789 MS.gene85598:CDS 45.0%
CCGGACTATCATTACAGATG+CGG - chr1.3:55184773-55184792 None:intergenic 45.0%
CTATTGCCAAACGAAGTCGT+GGG - chr1.3:55181076-55181095 None:intergenic 45.0%
CTGCTTAGCAAACCAATGAC+CGG - chr1.3:55184935-55184954 None:intergenic 45.0%
GAACTCTCTAACAATAGGGC+TGG + chr1.3:55183850-55183869 MS.gene85598:intron 45.0%
GACTCTCTAATCACCATGAC+AGG + chr1.3:55182715-55182734 MS.gene85598:intron 45.0%
GATCATGTACCCAATTCCCA+TGG - chr1.3:55183470-55183489 None:intergenic 45.0%
GCGTTTCAATACCGACATGA+TGG + chr1.3:55185321-55185340 MS.gene85598:CDS 45.0%
GGAATTATCAGAAGTCGTGG+AGG - chr1.3:55181287-55181306 None:intergenic 45.0%
GGATGGGGAGGTGATTTATT+AGG + chr1.3:55184210-55184229 MS.gene85598:intron 45.0%
GTAGATAAAAGGACCGAGTG+CGG - chr1.3:55182560-55182579 None:intergenic 45.0%
GTCCTGCTTCATGCATTTGA+AGG + chr1.3:55181972-55181991 MS.gene85598:intron 45.0%
GTCTACTTCCGAGTTTGAAG+TGG - chr1.3:55180975-55180994 None:intergenic 45.0%
GTCTCAGGTTTGATTCTCTC+CGG + chr1.3:55182982-55183001 MS.gene85598:intron 45.0%
GTGATCTGTACCATGGGAAT+TGG + chr1.3:55183457-55183476 MS.gene85598:CDS 45.0%
GTTCCATTAACTTCGGGTCA+GGG - chr1.3:55184879-55184898 None:intergenic 45.0%
GTTGTTGACCTTCATCTGCT+TGG - chr1.3:55185016-55185035 None:intergenic 45.0%
TAGGCTGTGATCTGTACCAT+GGG + chr1.3:55183451-55183470 MS.gene85598:intron 45.0%
TATCCATGCTTGTGTGTGCA+TGG + chr1.3:55184628-55184647 MS.gene85598:intron 45.0%
TCACAGCCTACACAACAGAA+TGG - chr1.3:55183441-55183460 None:intergenic 45.0%
TCACCAGATCATTATGAGGG+TGG + chr1.3:55185126-55185145 MS.gene85598:CDS 45.0%
TCTAATCACCATGACAGGAG+TGG + chr1.3:55182720-55182739 MS.gene85598:intron 45.0%
TGACAATACCACTCCTGTCA+TGG - chr1.3:55182731-55182750 None:intergenic 45.0%
TGAGAGTTGGGTCACAGAAA+GGG - chr1.3:55182445-55182464 None:intergenic 45.0%
TGCACACACAAGCATGGATA+TGG - chr1.3:55184628-55184647 None:intergenic 45.0%
TGCAGAATTGCCAGGGTAAT+GGG + chr1.3:55183538-55183557 MS.gene85598:CDS 45.0%
TGTTCCATTAACTTCGGGTC+AGG - chr1.3:55184880-55184899 None:intergenic 45.0%
TTAGGTAAAAGAGGATGGGG+AGG + chr1.3:55184198-55184217 MS.gene85598:intron 45.0%
TTATTGACATCCTCGCTCGT+TGG - chr1.3:55181025-55181044 None:intergenic 45.0%
TTCATCTGCTTGGACTTGTC+TGG - chr1.3:55185006-55185025 None:intergenic 45.0%
TTCCATTAACTTCGGGTCAG+GGG - chr1.3:55184878-55184897 None:intergenic 45.0%
TTGAGAGTTGGGTCACAGAA+AGG - chr1.3:55182446-55182465 None:intergenic 45.0%
TTGTCCTTTCTTCCGGTCAT+TGG + chr1.3:55184920-55184939 MS.gene85598:CDS 45.0%
! AAGGTGGAAGTGCATCATGA+AGG + chr1.3:55185499-55185518 MS.gene85598:CDS 45.0%
! ACAGAAAGGGCTACCGATTA+AGG - chr1.3:55182432-55182451 None:intergenic 45.0%
! ACGTAGAAGTCGGCTCTTAA+AGG - chr1.3:55182326-55182345 None:intergenic 45.0%
! ATTCTCTCCGGTGCCAATTT+CGG + chr1.3:55182994-55183013 MS.gene85598:intron 45.0%
! CACTCGGTCCTTTTATCTAC+TGG + chr1.3:55182560-55182579 MS.gene85598:intron 45.0%
! CATAGCTTAAGTACCGCACT+CGG + chr1.3:55182544-55182563 MS.gene85598:intron 45.0%
! CGTAGAAGTCGGCTCTTAAA+GGG - chr1.3:55182325-55182344 None:intergenic 45.0%
! GTAGAAGTCGGCTCTTAAAG+GGG - chr1.3:55182324-55182343 None:intergenic 45.0%
! GTTCTTGTTTCATCGCCGAT+TGG + chr1.3:55180794-55180813 MS.gene85598:CDS 45.0%
! TAGAAGTCGGCTCTTAAAGG+GGG - chr1.3:55182323-55182342 None:intergenic 45.0%
! TCCAAGAAAGTGGTCTTGGA+TGG - chr1.3:55180724-55180743 None:intergenic 45.0%
! TGCTTTTGTACTTCTGGGCA+AGG + chr1.3:55182843-55182862 MS.gene85598:intron 45.0%
! TTTTAACCGCGCCATGGAAA+AGG + chr1.3:55185257-55185276 MS.gene85598:CDS 45.0%
!! AAAACCCACTTGAGTTGGTC+TGG + chr1.3:55182920-55182939 MS.gene85598:intron 45.0%
!! AAGCTAAAGTGGTGGATGCA+AGG - chr1.3:55182094-55182113 None:intergenic 45.0%
!! AGATAGTGGGAGGACAGTTA+TGG + chr1.3:55184977-55184996 MS.gene85598:CDS 45.0%
!! AGTTCATTCCAGGTATCGAC+AGG - chr1.3:55185450-55185469 None:intergenic 45.0%
!! GGTAGAGGTACCAAAGAATC+GGG + chr1.3:55184714-55184733 MS.gene85598:intron 45.0%
!! GTAGAGGTACCAAAGAATCG+GGG + chr1.3:55184715-55184734 MS.gene85598:CDS 45.0%
!! TGCCGGTTCTTCCAATTTGA+CGG + chr1.3:55181183-55181202 MS.gene85598:CDS 45.0%
!! TGGTGCTATAATCACACCAC+CGG - chr1.3:55181257-55181276 None:intergenic 45.0%
!! TTGAGTTGGGCTATCCTCAT+GGG - chr1.3:55182208-55182227 None:intergenic 45.0%
!! TTTGAGTTGGGCTATCCTCA+TGG - chr1.3:55182209-55182228 None:intergenic 45.0%
!! GATTTATTATTATTATTATT+AGG + chr1.3:55184180-55184199 MS.gene85598:intron 5.0%
!!! TTTTTAAAAATTTGAATAAT+TGG - chr1.3:55183109-55183128 None:intergenic 5.0%
AAAGAGGAAAGGGCTACCGT+TGG - chr1.3:55182373-55182392 None:intergenic 50.0%
AACGGTAGCCCTTTCCTCTT+TGG + chr1.3:55182372-55182391 MS.gene85598:intron 50.0%
AAGAGGAAAGGGCTACCGTT+GGG - chr1.3:55182372-55182391 None:intergenic 50.0%
ACCACCAGACCAACTCAAGT+GGG - chr1.3:55182927-55182946 None:intergenic 50.0%
ACCAGTTCACCAAGTGCAAC+AGG - chr1.3:55185192-55185211 None:intergenic 50.0%
ACCGACATGATGGTCATCCT+GGG + chr1.3:55185331-55185350 MS.gene85598:CDS 50.0%
ATCACTAAACGTGGCCCAGA+TGG + chr1.3:55185381-55185400 MS.gene85598:CDS 50.0%
ATCATTATGAGGGTGGAGCC+TGG + chr1.3:55185133-55185152 MS.gene85598:CDS 50.0%
CAAGCCATGAGGACCATATC+CGG - chr1.3:55184792-55184811 None:intergenic 50.0%
CAGTGTGGTACTAAGCCATG+AGG - chr1.3:55182256-55182275 None:intergenic 50.0%
CATGAGGCTCTCCAACCTAA+TGG - chr1.3:55182240-55182259 None:intergenic 50.0%
CCAAAACCCACGACTTCGTT+TGG + chr1.3:55181067-55181086 MS.gene85598:CDS 50.0%
CCAAACTAGCCCACCGAAAT+TGG - chr1.3:55183010-55183029 None:intergenic 50.0%
CCATGAAACGTGGCACCAAT+CGG - chr1.3:55180812-55180831 None:intergenic 50.0%
CCGAACCATTACTTCTGTCC+TGG + chr1.3:55182661-55182680 MS.gene85598:intron 50.0%
CGAGTGCAAACTATCCCAGA+AGG - chr1.3:55182687-55182706 None:intergenic 50.0%
CGTGGGATGTCACACTGAAA+GGG - chr1.3:55183600-55183619 None:intergenic 50.0%
CTATAATCACACCACCGGAC+TGG - chr1.3:55181252-55181271 None:intergenic 50.0%
GAAGGCCAGGACAGAAGTAA+TGG - chr1.3:55182669-55182688 None:intergenic 50.0%
GAAGTCGTGGAGGTTTCCTT+TGG - chr1.3:55181277-55181296 None:intergenic 50.0%
GACACAGATGCAGAATTGCC+AGG + chr1.3:55183530-55183549 MS.gene85598:CDS 50.0%
GACGTGGTTGTCCTTTCTTC+CGG + chr1.3:55184913-55184932 MS.gene85598:CDS 50.0%
GCAACTGTTTCGGTTGAAGC+AGG + chr1.3:55181160-55181179 MS.gene85598:CDS 50.0%
GCTCCACCCTCATAATGATC+TGG - chr1.3:55185132-55185151 None:intergenic 50.0%
GGTTCTTCCAATTTGACGGG+TGG + chr1.3:55181187-55181206 MS.gene85598:CDS 50.0%
GTAGGCTGTGATCTGTACCA+TGG + chr1.3:55183450-55183469 MS.gene85598:intron 50.0%
GTGTGAGTGTGTATGTGTGC+GGG - chr1.3:55183247-55183266 None:intergenic 50.0%
GTTTCAAATGACCAGTCCGG+TGG + chr1.3:55181238-55181257 MS.gene85598:CDS 50.0%
TACCGACATGATGGTCATCC+TGG + chr1.3:55185330-55185349 MS.gene85598:CDS 50.0%
TAGTCCGGATATGGTCCTCA+TGG + chr1.3:55184785-55184804 MS.gene85598:CDS 50.0%
TAGTGGGAGGACAGTTATGG+TGG + chr1.3:55184980-55184999 MS.gene85598:CDS 50.0%
TCGTGGGATGTCACACTGAA+AGG - chr1.3:55183601-55183620 None:intergenic 50.0%
TGAAGCCGCCAAAGAGGAAA+GGG - chr1.3:55182383-55182402 None:intergenic 50.0%
TGATTATGCTCCAGCTGGTG+TGG + chr1.3:55184834-55184853 MS.gene85598:CDS 50.0%
TGCTGCATATGCACCATACC+CGG + chr1.3:55184524-55184543 MS.gene85598:intron 50.0%
! AAGGGGGTGATGGCAATGTT+AGG - chr1.3:55182307-55182326 None:intergenic 50.0%
! CCAAACGAAGTCGTGGGTTT+TGG - chr1.3:55181070-55181089 None:intergenic 50.0%
! CGTCACTTTGACAAGCCATG+AGG - chr1.3:55184803-55184822 None:intergenic 50.0%
! GCCGGTTCTTCCAATTTGAC+GGG + chr1.3:55181184-55181203 MS.gene85598:CDS 50.0%
! GGATAGTTTGCACTCGAGTC+TGG + chr1.3:55182691-55182710 MS.gene85598:intron 50.0%
! GGGAAGACCTTGGCTTTCAT+TGG + chr1.3:55183654-55183673 MS.gene85598:CDS 50.0%
! TACTTCTGTCCTGGCCTTCT+GGG + chr1.3:55182670-55182689 MS.gene85598:intron 50.0%
! TTACTTCTGTCCTGGCCTTC+TGG + chr1.3:55182669-55182688 MS.gene85598:intron 50.0%
! TTGTAGCCTTTTCCATGGCG+CGG - chr1.3:55185266-55185285 None:intergenic 50.0%
!! AACGAAGTCGTGGGTTTTGG+TGG - chr1.3:55181067-55181086 None:intergenic 50.0%
!! AGAATTGCCAGGGTAATGGG+AGG + chr1.3:55183541-55183560 MS.gene85598:CDS 50.0%
!! CATTAGGTTGGAGAGCCTCA+TGG + chr1.3:55182238-55182257 MS.gene85598:intron 50.0%
!! CCAATTTCGGTGGGCTAGTT+TGG + chr1.3:55183007-55183026 MS.gene85598:intron 50.0%
!! TACAGGTTTTAACCGCGCCA+TGG + chr1.3:55185251-55185270 MS.gene85598:CDS 50.0%
!! TTGAGTTGGTCTGGTGGTGT+TGG + chr1.3:55182929-55182948 MS.gene85598:intron 50.0%
!! TTTGGGTTGGACTCTCCTCA+TGG - chr1.3:55182497-55182516 None:intergenic 50.0%
ATGGTCATCCTGGGCCTTAC+AGG + chr1.3:55185340-55185359 MS.gene85598:CDS 55.0%
CACCACCAGACCAACTCAAG+TGG - chr1.3:55182928-55182947 None:intergenic 55.0%
CACCAGTGCAAGCAATCCTG+TGG - chr1.3:55185417-55185436 None:intergenic 55.0%
CAGTGCAAGCAATCCTGTGG+CGG - chr1.3:55185414-55185433 None:intergenic 55.0%
CCTGACAACGCATCCAATGC+CGG + chr1.3:55181340-55181359 MS.gene85598:CDS 55.0%
CTAAACGTGGCCCAGATGGA+AGG + chr1.3:55185385-55185404 MS.gene85598:CDS 55.0%
GCAAACTATCCCAGAAGGCC+AGG - chr1.3:55182682-55182701 None:intergenic 55.0%
GCACCATGCACACACAAGCA+TGG - chr1.3:55184634-55184653 None:intergenic 55.0%
GCCCAGGATGACCATCATGT+CGG - chr1.3:55185335-55185354 None:intergenic 55.0%
GCTGATGAGAGGGAAGACCT+TGG + chr1.3:55183644-55183663 MS.gene85598:CDS 55.0%
GGTAGCCCTTTCCTCTTTGG+CGG + chr1.3:55182375-55182394 MS.gene85598:intron 55.0%
GTGAAGCCGCCAAAGAGGAA+AGG - chr1.3:55182384-55182403 None:intergenic 55.0%
GTTTCGGTTGAAGCAGGTGC+CGG + chr1.3:55181166-55181185 MS.gene85598:CDS 55.0%
TAGCCCACCGAAATTGGCAC+CGG - chr1.3:55183004-55183023 None:intergenic 55.0%
TCGGCTCTTAAAGGGGGTGA+TGG - chr1.3:55182317-55182336 None:intergenic 55.0%
TGCCCCTGACCCGAAGTTAA+TGG + chr1.3:55184873-55184892 MS.gene85598:CDS 55.0%
TGGAGCTTATCCACACCAGC+TGG - chr1.3:55184847-55184866 None:intergenic 55.0%
TGGCGGCTTCACTCACCAAT+CGG + chr1.3:55182392-55182411 MS.gene85598:intron 55.0%
TGTGCTCCTCTCAAGGTCTC+AGG + chr1.3:55182967-55182986 MS.gene85598:intron 55.0%
TGTGGAACTTCCAACGAGCG+AGG + chr1.3:55181012-55181031 MS.gene85598:CDS 55.0%
TTTGGGTCAGGGCTCCTGTA+AGG - chr1.3:55185357-55185376 None:intergenic 55.0%
! GCCTGTTGCACTTGGTGAAC+TGG + chr1.3:55185188-55185207 MS.gene85598:CDS 55.0%
! GGCTCTCCAACCTAATGGAC+TGG - chr1.3:55182235-55182254 None:intergenic 55.0%
! TCTCCGGTGCCAATTTCGGT+GGG + chr1.3:55182998-55183017 MS.gene85598:intron 55.0%
!! ACCCACTTGAGTTGGTCTGG+TGG + chr1.3:55182923-55182942 MS.gene85598:intron 55.0%
!! CCGATTGGTGCCACGTTTCA+TGG + chr1.3:55180809-55180828 MS.gene85598:CDS 55.0%
!! CTCTATCGGCACTGACCCAA+CGG + chr1.3:55182354-55182373 MS.gene85598:intron 55.0%
!! TGGTCTGGTGGTGTTGGCTT+GGG + chr1.3:55182935-55182954 MS.gene85598:intron 55.0%
!! TTCCAGGTATCGACAGGACC+TGG - chr1.3:55185444-55185463 None:intergenic 55.0%
!! TTGGTCTGGTGGTGTTGGCT+TGG + chr1.3:55182934-55182953 MS.gene85598:intron 55.0%
AACACCGGTGGGTCATGCAC+TGG + chr1.3:55185156-55185175 MS.gene85598:CDS 60.0%
ACACCGGTGGGTCATGCACT+GGG + chr1.3:55185157-55185176 MS.gene85598:CDS 60.0%
CGCCACAGGATTGCTTGCAC+TGG + chr1.3:55185412-55185431 MS.gene85598:CDS 60.0%
CTCGGAGTGTGCTCCTCTCA+AGG + chr1.3:55182960-55182979 MS.gene85598:intron 60.0%
CTTCCCAGTGCATGACCCAC+CGG - chr1.3:55185163-55185182 None:intergenic 60.0%
GGTGAGTGAAGCCGCCAAAG+AGG - chr1.3:55182389-55182408 None:intergenic 60.0%
TGCAAGCAATCCTGTGGCGG+TGG - chr1.3:55185411-55185430 None:intergenic 60.0%
TGCCAGGTCCTGTCGATACC+TGG + chr1.3:55185439-55185458 MS.gene85598:CDS 60.0%
TGTCAGGCCTCCCATTACCC+TGG - chr1.3:55183551-55183570 None:intergenic 60.0%
! CCGGCATTGGATGCGTTGTC+AGG - chr1.3:55181343-55181362 None:intergenic 60.0%
! CTCTCCGGTGCCAATTTCGG+TGG + chr1.3:55182997-55183016 MS.gene85598:intron 60.0%
! CTTGAGAGGAGCACACTCCG+AGG - chr1.3:55182962-55182981 None:intergenic 60.0%
! TGCTTGCACTGGTGCATGCC+AGG + chr1.3:55185423-55185442 MS.gene85598:CDS 60.0%
!! GTGGTGTTGGCTTGGGACCT+CGG + chr1.3:55182942-55182961 MS.gene85598:intron 60.0%
!! TCGGGTCAGGGGCATCAAGA+TGG - chr1.3:55184867-55184886 None:intergenic 60.0%
AGATGGAAGGCCACCGCCAC+AGG + chr1.3:55185398-55185417 MS.gene85598:CDS 65.0%
CGGTGGGTCATGCACTGGGA+AGG + chr1.3:55185161-55185180 MS.gene85598:CDS 65.0%
GAGGGTGGAGCCTGGAACAC+CGG + chr1.3:55185141-55185160 MS.gene85598:CDS 65.0%
GCATGACCCACCGGTGTTCC+AGG - chr1.3:55185154-55185173 None:intergenic 65.0%
GTGGAGCCTGGAACACCGGT+GGG + chr1.3:55185145-55185164 MS.gene85598:CDS 65.0%
GTGGCGGTGGCCTTCCATCT+GGG - chr1.3:55185398-55185417 None:intergenic 65.0%
TCAGGGCTCCTGTAAGGCCC+AGG - chr1.3:55185351-55185370 None:intergenic 65.0%
TGTGGCGGTGGCCTTCCATC+TGG - chr1.3:55185399-55185418 None:intergenic 65.0%
GGTGGAGCCTGGAACACCGG+TGG + chr1.3:55185144-55185163 MS.gene85598:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 55180713 55185518 55180713 ID=MS.gene85598
chr1.3 mRNA 55180713 55185518 55180713 ID=MS.gene85598.t1;Parent=MS.gene85598
chr1.3 exon 55180713 55181376 55180713 ID=MS.gene85598.t1.exon1;Parent=MS.gene85598.t1
chr1.3 CDS 55180713 55181376 55180713 ID=cds.MS.gene85598.t1;Parent=MS.gene85598.t1
chr1.3 exon 55183454 55183728 55183454 ID=MS.gene85598.t1.exon2;Parent=MS.gene85598.t1
chr1.3 CDS 55183454 55183728 55183454 ID=cds.MS.gene85598.t1;Parent=MS.gene85598.t1
chr1.3 exon 55184715 55185518 55184715 ID=MS.gene85598.t1.exon3;Parent=MS.gene85598.t1
chr1.3 CDS 55184715 55185518 55184715 ID=cds.MS.gene85598.t1;Parent=MS.gene85598.t1
Gene Sequence

>MS.gene85598

ATGTCTTACCATCCAAGACCACTTTCTTGGATTGTTGTTTTAGTAGGAGCACTTGCAATTTTCTTAATCTATGCTTCATTTGTTCTTGTTTCATCGCCGATTGGTGCCACGTTTCATGGATATTTTTACGGTATAGGTAGTTCTGAGAAGTTAGATGTATCTGGATCTCCTATAAATGTTGCTTCTATTGATAATAAACCGTCTTTAGATTCACAATCTTCCACTGGTACTAGTGATAGCAATATAGAAAAAACCGATACCACTTCAAACTCGGAAGTAGACAATAGTAAGTCTAGTTCTGTGGAACTTCCAACGAGCGAGGATGTCAATAAAACTTCTGATGTGAAACTTCCACCAAAACCCACGACTTCGTTTGGCAATAGTGTAGATACGGCCAATACTAGTTTGCCTGCTCAAGCAAATTCACAAGTTGATTCAACTTCAAGTGCAACTGTTTCGGTTGAAGCAGGTGCCGGTTCTTCCAATTTGACGGGTGGTATTAGAACTGAAGAACCCCCTTCTACGGTTTCAAATGACCAGTCCGGTGGTGTGATTATAGCACCAAAGGAAACCTCCACGACTTCTGATAATTCCACATTAACAGCTGTTCCAGAATCAGTAAAGAAGCCTGACAACGCATCCAATGCCGGTTCAGTTAATTCAGGTTACTGTTGCAATCTTTCACCTACACTAGCTTGTTTTTTAAATGCTTCATGGTATAATATTTACCATTCTTGTTTTGTACTACTATAATATACAATAACATAAAATTGTCTGTTTTTCTTTACTTCACTCTCTTTTGGAAGCACATTGTGTTTAGTAAAATAGTCTCATTTTATTAATCTTAACTCACTACTTGTTATATCCTAGAGAAACTGAAATGAACAGAAGATAGAAAAAAATCAAGAGAATAGAAGTGTATTATTGCAAACTGAACTGGAATTGTAGAAATGTAATTCAACCCAAGAGTTTTCCCTTTGTAAAGGATATCTCTTTTCACTTTCCATGTACAACTATCAAATTGACATCTCCTCCTTTCCATTCCCATATTCTCTTTTTAATTTTTATAACTCATTCTAACTATTACTACTAAATTTACAATTTTATTCTACCCCAACATTACTATTTTATCTAACTTCAAACTGTGATTAGGATTTAACCACCTAACAAAAAAACACTCATAGCTATTTGTCTAGTTAATGTATTACATGAAAAGTCTGAGGGAGGGATATATTTCGTCTTTAAACATGCATACATATGTCCTGCTTCATGCATTTGAAGGATTCAGGTTGAGAGAGAGATTTTTCTTACAGTAGACACTAATATAGCAAAGAGATGATGTTGTCTATATTTTTCTCCGAGGGCTTTAATGAGATTTCCTTGCATCCACCACTTTAGCTTGTTTTTAGTACAATTGTCGAGTAACCTCTATTTTATTTTGGTCTTTGTTTCAGTTATCAATTGGGCTAATTAAGTGGTTGTTAGACTTAAGCCCATGAGGATAGCCCAACTCAAAAGACCAGTCCATTAGGTTGGAGAGCCTCATGGCTTAGTACCACACTGAGCACTTTTATCTAGTTTATGTGGGACTCCTAACATTGCCATCACCCCCTTTAAGAGCCGACTTCTACGTCAGTTTCACTCTATCGGCACTGACCCAACGGTAGCCCTTTCCTCTTTGGCGGCTTCACTCACCAATCGGTATTTAGTTGAGTACCTTAATCGGTAGCCCTTTCTGTGACCCAACTCTCAATGACAGCATCATTTATTAGGACTTATGTCCATGAGGAGAGTCCAACCCAAAAGACTAGTTTATTAAGTGGGAGAGCATCATAGCTTAAGTACCGCACTCGGTCCTTTTATCTACTGGAATTTTGGCGTGTTTGTTTGGTAGGGTATCTGTTTGTTAACTCTCTAAATCATCAGAATTTTTTTTTTCTTTTTTCTTCCGAACCATTACTTCTGTCCTGGCCTTCTGGGATAGTTTGCACTCGAGTCTGGTGACTCTCTAATCACCATGACAGGAGTGGTATTGTCATGATGATGTTTGGTTGTTCACTGTTCCTTGTTTCTTGTTGCTAAGCACATAATTGAGTTGTTAATTAGCAACTGAATCAACGGATTTAATTTTGCTTTTGTACTTCTGGGCAAGGATCTGAATTTCATTGTCAACAACACTAAATCGCTTATAAAGAATCGTAACAGAAAAAACCCACTTGAGTTGGTCTGGTGGTGTTGGCTTGGGACCTCGGAGTGTGCTCCTCTCAAGGTCTCAGGTTTGATTCTCTCCGGTGCCAATTTCGGTGGGCTAGTTTGGCTTATTCTAAAAAAAAAAATTGTAACAGAAATATTTCGTTGTAGTATATACAAAATGAATAAATTGAAACATGAAACCAATTATTCAAATTTTTAAAAAGTTGAATTCACAGTAGTTTCAGGTGTATGGATTACTGACTGCAAATATGATGTATAATTCAAAGTTTTGGTTGGCAGATATGACACAGCCTCACATATACATGCACTCACACGAGCCCGCACACATACACACTCACACTCACCGACACACTCACACTTGTGTTGCTATATATGTTTGGAAAATTCTCAAACATATGTAAATTATTAGTAGCTGTATCTTGTTACTAAAAATTTCTTATTGTAAACAGGTGACGGTTTTATAATAATATTGTTTGAAATTACTCTGTGTGAGGCTTTTAATTGGTATTGTCCATTCTGTTGTGTAGGCTGTGATCTGTACCATGGGAATTGGGTACATGATCCATTGGGACCACTTTACACAAACAATACATGTCCTGTATTGACACAGATGCAGAATTGCCAGGGTAATGGGAGGCCTGACAAAGATTATGAGAATTGGCGATGGAAGCCCTTTCAGTGTGACATCCCACGATTTGATCCTAGAAAATTTTTGGAGCTGATGAGAGGGAAGACCTTGGCTTTCATTGGAGATTCAGTAGCTCGAAACCAAATGGAATCAATGTTGTGTATTCTGTGGCAGGTTATTTCTTTATTTTATTCCTTATTGATCTGTTTTGCATGGAAAATAAAATGATTTAGAGATTATGGAAATATTATCAGTTTTACTGTCGTCATTGTTGCTGCATATTGTTTGTGATTATGAACTCTCTAACAATAGGGCTGGAAATATTTGAACTTTGAATTTGACTAGTTAAGATGTACGAGATTGTTTGTAAGTTTTATCCGAGACACGCATAATCGAATCATTTACGAGATTGTTTGTTCACATCTCAACAGAAAGACTTCAACATGATAAAGCTTTCAACCTGTTTGTATTTTATATTTGTTTGGTTTGGCTTCATCTAAATAAATAGAGTAACTCTTATTATTATTGTATTATGGATGCTTAATTTATTGACATTTATTTGAGAACCATAAATGTTAATAAAAAGAAAAATTGTTTTGCTTTGAAACAACTTCTGCAACATGTGGATTTATTATTATTATTATTAGGTAAAAGAGGATGGGGAGGTGATTTATTAGGTAAACCAGGAAGTAAATGAGAATGAAATCAGGAAACAAATTGATATGCATCCAGTACAACAATTTCTGCATTTCTAATCTAGTTTCTCATATAAACATTTCTTTATTAGGTAAAAGAGGAACGTAATCAAATTGATTTGGCGAGAAACTAAGTATATTTTTCTCAACATTTCTTTTCTTAGTTTGGCTTTGAAATTTTATGCCTTTCCCAGCCAAAGTATATTCCAATAAAAAGAAAAATGCATGTTTTGCCTCTTGGCACTGCATCAAAAATTGTTTTATGTGGCTTTAATGCTGCATATGCACCATACCCGGTTCATAATGAAATGGTTTTTAGCCGTTCAACAGCATGCATTTGATTGCAAGTATTCATTTACACATACATAGGGTTTTCCATATCCATGCTTGTGTGTGCATGGTGCATGTGATTAAGCATCCATTTTATCATAGCTAGAAGCTTAACTGAAAATATGGTATTTTCAGGTAGAGGTACCAAAGAATCGGGGAAATCGTAATATGCAAAGATATTATTTTAGGTCCGCATCTGTAATGATAGTCCGGATATGGTCCTCATGGCTTGTCAAAGTGACGTCTGAACCATTTGATTATGCTCCAGCTGGTGTGGATAAGCTCCATCTTGATGCCCCTGACCCGAAGTTAATGGAACATATCCCAAATTTTGACGTGGTTGTCCTTTCTTCCGGTCATTGGTTTGCTAAGCAGTCTGTGTATATCTTGAATAACGAGATAGTGGGAGGACAGTTATGGTGGCCAGACAAGTCCAAGCAGATGAAGGTCAACAACATTCAAGCATATGCTATATCTGTAGAAACAATTCTTACTGCTCTTGCTACACATCCAACTTACAAAGGTCTCGCAATTGTTCGGTCCTATTCACCAGATCATTATGAGGGTGGAGCCTGGAACACCGGTGGGTCATGCACTGGGAAGGTTAAGCCTGTTGCACTTGGTGAACTGGTAGAAAACGGGCACACAAATACGATGCATGAGCAACAGGTTACAGGTTTTAACCGCGCCATGGAAAAGGCTACAAATAAATCGAAGTTGACGTTAATGGACATTACTCAAGCGTTTCAATACCGACATGATGGTCATCCTGGGCCTTACAGGAGCCCTGACCCAAATAAGATCACTAAACGTGGCCCAGATGGAAGGCCACCGCCACAGGATTGCTTGCACTGGTGCATGCCAGGTCCTGTCGATACCTGGAATGAACTTGTCTTGGAAATCATCAAGAGAGAATATGAAGGTGGAAGTGCATCATGA
Protein sequence

>MS.gene85598.t1

MSYHPRPLSWIVVLVGALAIFLIYASFVLVSSPIGATFHGYFYGIGSSEKLDVSGSPINVASIDNKPSLDSQSSTGTSDSNIEKTDTTSNSEVDNSKSSSVELPTSEDVNKTSDVKLPPKPTTSFGNSVDTANTSLPAQANSQVDSTSSATVSVEAGAGSSNLTGGIRTEEPPSTVSNDQSGGVIIAPKETSTTSDNSTLTAVPESVKKPDNASNAGSVNSGCDLYHGNWVHDPLGPLYTNNTCPVLTQMQNCQGNGRPDKDYENWRWKPFQCDIPRFDPRKFLELMRGKTLAFIGDSVARNQMESMLCILWQVEVPKNRGNRNMQRYYFRSASVMIVRIWSSWLVKVTSEPFDYAPAGVDKLHLDAPDPKLMEHIPNFDVVVLSSGHWFAKQSVYILNNEIVGGQLWWPDKSKQMKVNNIQAYAISVETILTALATHPTYKGLAIVRSYSPDHYEGGAWNTGGSCTGKVKPVALGELVENGHTNTMHEQQVTGFNRAMEKATNKSKLTLMDITQAFQYRHDGHPGPYRSPDPNKITKRGPDGRPPPQDCLHWCMPGPVDTWNELVLEIIKREYEGGSAS