AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene42921

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42921.t1 MTR_6g061710 94.084 524 31 0 1 524 1 524 0.0 1033
MS.gene42921.t1 MTR_1g076690 60.172 580 161 8 14 524 2 580 0.0 692
MS.gene42921.t1 MTR_6g016880 35.279 377 221 8 147 517 63 422 6.68e-77 249
MS.gene42921.t1 MTR_7g019120 34.426 366 224 6 157 517 69 423 1.11e-75 246
MS.gene42921.t1 MTR_6g016875 33.770 382 223 9 150 515 42 409 5.05e-73 238
MS.gene42921.t1 MTR_8g099300 33.898 354 220 8 167 514 74 419 1.15e-72 237
MS.gene42921.t1 MTR_6g007777 33.014 418 257 9 108 517 58 460 1.29e-72 239
MS.gene42921.t1 MTR_8g027900 35.215 372 228 8 148 514 192 555 4.96e-71 237
MS.gene42921.t1 MTR_5g035090 35.068 365 204 10 167 516 83 429 9.24e-69 228
MS.gene42921.t1 MTR_7g033230 35.967 367 207 11 163 516 260 611 2.80e-66 226
MS.gene42921.t1 MTR_7g033230 35.967 367 207 11 163 516 330 681 1.13e-65 225
MS.gene42921.t1 MTR_3g109840 33.508 382 228 10 145 516 52 417 1.83e-65 218
MS.gene42921.t1 MTR_5g035080 32.741 394 241 10 134 516 42 422 2.61e-65 218
MS.gene42921.t1 MTR_2g016060 35.054 368 199 13 168 516 56 402 7.58e-65 216
MS.gene42921.t1 MTR_5g035150 33.690 374 203 13 165 516 83 433 3.36e-64 215
MS.gene42921.t1 MTR_8g104970 35.196 358 216 11 165 515 118 466 3.04e-63 214
MS.gene42921.t1 MTR_5g035070 34.626 361 213 10 167 516 87 435 5.45e-59 202
MS.gene42921.t1 MTR_7g109550 32.723 382 204 15 148 511 118 464 5.18e-54 189
MS.gene42921.t1 MTR_7g093450 31.649 376 223 12 157 519 239 593 1.78e-53 191
MS.gene42921.t1 MTR_7g094750 31.335 367 214 10 167 517 91 435 4.22e-53 186
MS.gene42921.t1 MTR_4g126950 28.753 393 241 9 139 514 76 446 1.43e-52 185
MS.gene42921.t1 MTR_0136s0010 29.716 387 214 12 148 511 155 506 1.03e-51 184
MS.gene42921.t1 MTR_5g033800 30.618 356 216 9 167 511 145 480 1.87e-51 183
MS.gene42921.t1 MTR_5g059400 29.521 376 226 10 159 516 167 521 3.06e-50 180
MS.gene42921.t1 MTR_1g116130 29.521 376 226 10 159 516 167 521 3.06e-50 180
MS.gene42921.t1 MTR_8g069790 30.028 363 219 10 162 511 173 513 2.55e-49 178
MS.gene42921.t1 MTR_4g125060 30.769 442 236 18 101 514 111 510 8.44e-49 176
MS.gene42921.t1 MTR_4g125060 30.769 442 236 18 101 514 72 471 1.11e-48 175
MS.gene42921.t1 MTR_8g463790 29.365 378 216 12 163 519 67 414 1.25e-48 173
MS.gene42921.t1 MTR_4g125060 30.769 442 236 18 101 514 140 539 1.66e-48 176
MS.gene42921.t1 MTR_2g022560 30.685 365 214 9 166 514 96 437 2.74e-47 171
MS.gene42921.t1 MTR_1g112210 31.063 367 200 13 152 510 44 365 1.98e-46 166
MS.gene42921.t1 MTR_1g112210 30.270 370 212 11 152 510 44 378 1.38e-45 164
MS.gene42921.t1 MTR_8g093870 31.008 387 201 16 157 514 123 472 4.63e-45 165
MS.gene42921.t1 MTR_4g121560 29.076 368 229 11 159 514 106 453 7.92e-45 164
MS.gene42921.t1 MTR_3g090120 29.211 380 204 12 166 521 128 466 2.66e-43 160
MS.gene42921.t1 MTR_5g071350 28.723 376 229 12 151 511 45 396 4.60e-43 158
MS.gene42921.t1 MTR_1g050448 31.522 368 213 13 154 514 40 375 3.80e-42 155
MS.gene42921.t1 MTR_1g058380 29.262 393 218 12 158 524 46 404 6.55e-42 155
MS.gene42921.t1 MTR_4g014440 27.957 372 236 13 158 514 53 407 2.20e-40 151
MS.gene42921.t1 MTR_3g049330 29.178 353 208 11 166 511 30 347 1.04e-39 147
MS.gene42921.t1 MTR_3g070900 28.969 359 233 11 165 514 104 449 1.93e-39 149
MS.gene42921.t1 MTR_3g464570 28.191 376 221 13 155 514 34 376 4.51e-39 146
MS.gene42921.t1 MTR_4g016940 28.412 359 229 13 167 514 86 427 1.75e-38 146
MS.gene42921.t1 MTR_8g093530 26.882 372 227 10 160 519 83 421 2.39e-38 145
MS.gene42921.t1 MTR_3g071650 28.371 356 227 14 167 511 89 427 2.67e-38 145
MS.gene42921.t1 MTR_5g083260 28.011 357 231 14 165 511 81 421 1.08e-37 144
MS.gene42921.t1 MTR_7g070060 27.855 359 235 12 167 514 64 409 5.00e-37 142
MS.gene42921.t1 MTR_3g021060 28.232 379 204 10 155 514 34 363 5.97e-37 140
MS.gene42921.t1 MTR_2g015720 29.700 367 197 12 163 514 38 358 6.08e-37 140
MS.gene42921.t1 MTR_4g079700 27.989 368 206 13 161 514 41 363 2.33e-36 139
MS.gene42921.t1 MTR_4g014430 27.297 370 220 14 165 514 106 446 2.74e-36 140
MS.gene42921.t1 MTR_2g091175 29.545 352 201 12 167 510 50 362 2.85e-36 139
MS.gene42921.t1 MTR_3g035830 27.248 367 203 12 165 514 29 348 3.68e-36 138
MS.gene42921.t1 MTR_1g111010 28.883 367 185 13 167 514 32 341 5.17e-36 137
MS.gene42921.t1 MTR_4g088030 29.526 359 193 12 167 510 33 346 2.44e-35 135
MS.gene42921.t1 MTR_2g073510 27.424 361 209 14 167 514 33 353 1.21e-34 134
MS.gene42921.t1 MTR_7g068920 25.481 416 256 15 125 514 34 421 1.95e-34 134
MS.gene42921.t1 MTR_5g034810 27.298 359 217 12 160 511 28 349 2.32e-34 133
MS.gene42921.t1 MTR_4g092830 27.005 374 218 14 167 514 48 392 3.18e-34 134
MS.gene42921.t1 MTR_7g019140 51.456 103 50 0 157 259 69 171 4.04e-34 127
MS.gene42921.t1 MTR_2g073500 29.301 372 194 14 162 514 24 345 4.23e-34 132
MS.gene42921.t1 MTR_3g021090 26.966 356 210 9 165 510 29 344 7.87e-34 132
MS.gene42921.t1 MTR_4g087730 29.296 355 205 15 164 510 42 358 2.01e-33 130
MS.gene42921.t1 MTR_5g082880 26.685 371 229 10 165 514 163 511 2.26e-33 133
MS.gene42921.t1 MTR_7g094750 31.984 247 146 7 167 400 91 328 2.42e-33 129
MS.gene42921.t1 MTR_5g035120 51.648 91 44 0 165 255 73 163 2.61e-30 116
MS.gene42921.t1 MTR_5g033800 34.254 181 106 4 167 337 145 322 9.97e-30 120
MS.gene42921.t1 MTR_5g035140 30.709 254 159 9 271 517 25 268 1.52e-28 114
MS.gene42921.t1 MTR_6g016240 24.665 373 239 11 160 512 64 414 1.62e-28 118
MS.gene42921.t1 MTR_7g070060 37.037 135 79 2 167 295 64 198 4.20e-25 105
MS.gene42921.t1 MTR_3g464570 25.333 300 178 12 231 514 3 272 4.79e-17 81.6
MS.gene42921.t1 MTR_7g070060 24.183 306 209 11 219 514 15 307 1.38e-15 78.2
MS.gene42921.t1 MTR_0929s0010 48.276 58 30 0 157 214 69 126 4.07e-14 69.7
MS.gene42921.t1 MTR_7g019130 28.125 128 85 3 281 405 1 124 8.11e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42921.t1 AT5G51640 59.168 529 171 8 8 524 3 498 0.0 612
MS.gene42921.t1 AT4G25360 57.364 516 199 6 17 517 18 527 0.0 604
MS.gene42921.t1 AT4G25360 57.364 516 199 6 17 517 18 527 0.0 604
MS.gene42921.t1 AT4G23790 36.313 358 215 7 164 514 76 427 2.16e-79 255
MS.gene42921.t1 AT1G01430 36.430 409 241 12 117 514 47 447 3.69e-79 255
MS.gene42921.t1 AT5G15900 35.376 359 211 9 167 517 67 412 1.70e-75 245
MS.gene42921.t1 AT5G15900 35.376 359 211 9 167 517 86 431 2.38e-75 245
MS.gene42921.t1 AT1G70230 38.187 364 182 11 167 516 79 413 2.65e-75 244
MS.gene42921.t1 AT4G11090 36.490 359 211 11 164 514 76 425 1.09e-73 240
MS.gene42921.t1 AT5G15890 30.740 527 316 15 20 517 19 525 3.58e-73 242
MS.gene42921.t1 AT4G01080 35.200 375 228 7 154 524 78 441 8.55e-71 233
MS.gene42921.t1 AT3G02440 32.676 355 221 7 167 515 127 469 4.59e-70 232
MS.gene42921.t1 AT3G02440 32.676 355 221 7 167 515 135 477 5.15e-70 232
MS.gene42921.t1 AT3G28150 33.146 356 219 7 167 516 70 412 7.79e-67 222
MS.gene42921.t1 AT5G20590 33.333 366 199 11 164 511 138 476 2.71e-57 198
MS.gene42921.t1 AT3G62390 29.778 450 259 14 91 511 47 468 4.73e-53 187
MS.gene42921.t1 AT5G49340 28.934 394 238 10 139 514 72 441 1.43e-52 185
MS.gene42921.t1 AT1G60790 30.155 451 275 15 80 511 100 529 3.27e-52 186
MS.gene42921.t1 AT3G12060 27.376 442 281 9 81 511 120 532 7.71e-51 182
MS.gene42921.t1 AT5G06700 28.008 482 280 15 74 514 140 595 3.93e-50 182
MS.gene42921.t1 AT3G06080 30.481 374 211 11 166 517 102 448 9.34e-50 178
MS.gene42921.t1 AT1G73140 30.728 371 214 10 165 518 65 409 1.91e-48 173
MS.gene42921.t1 AT5G19160 29.815 379 215 13 166 520 98 449 7.90e-48 172
MS.gene42921.t1 AT5G20680 29.716 387 224 11 148 514 99 457 8.42e-45 164
MS.gene42921.t1 AT5G06230 29.504 383 210 11 157 511 11 361 1.12e-44 162
MS.gene42921.t1 AT5G06230 29.504 383 210 11 157 511 52 402 2.09e-44 162
MS.gene42921.t1 AT5G20680 30.239 377 215 11 158 514 185 533 2.48e-44 164
MS.gene42921.t1 AT5G20680 30.239 377 215 11 158 514 203 551 2.91e-44 164
MS.gene42921.t1 AT5G20680 30.239 377 215 11 158 514 203 551 2.91e-44 164
MS.gene42921.t1 AT5G20680 30.239 377 215 11 158 514 203 551 2.91e-44 164
MS.gene42921.t1 AT5G20680 30.239 377 215 11 158 514 203 551 2.91e-44 164
MS.gene42921.t1 AT5G64020 30.585 376 209 14 167 514 57 408 6.41e-43 158
MS.gene42921.t1 AT5G64470 27.945 365 221 11 167 514 55 394 7.08e-43 157
MS.gene42921.t1 AT2G30900 30.376 372 211 12 154 511 25 362 1.42e-42 156
MS.gene42921.t1 AT2G31110 30.108 372 200 11 156 511 32 359 5.05e-42 154
MS.gene42921.t1 AT5G64470 28.226 372 217 13 167 514 55 400 7.15e-42 155
MS.gene42921.t1 AT2G40160 28.134 359 233 9 164 510 74 419 6.68e-41 152
MS.gene42921.t1 AT2G40160 28.065 367 238 10 164 517 74 427 7.58e-41 153
MS.gene42921.t1 AT2G30010 28.362 409 227 13 144 514 16 396 5.63e-40 149
MS.gene42921.t1 AT2G30010 29.268 369 212 11 167 514 99 439 1.37e-39 149
MS.gene42921.t1 AT3G14850 29.050 358 211 12 165 514 32 354 1.93e-39 147
MS.gene42921.t1 AT5G01360 26.836 354 236 10 167 511 36 375 2.91e-39 147
MS.gene42921.t1 AT2G14530 28.173 394 242 13 140 514 35 406 5.45e-39 147
MS.gene42921.t1 AT5G01360 26.912 353 237 10 167 511 92 431 7.12e-39 147
MS.gene42921.t1 AT3G54260 30.495 364 197 14 167 514 51 374 8.40e-39 146
MS.gene42921.t1 AT1G29050 29.380 371 188 13 166 514 60 378 1.07e-38 145
MS.gene42921.t1 AT2G34070 28.571 357 210 10 166 514 64 383 2.39e-38 145
MS.gene42921.t1 AT3G11570 29.143 350 196 12 183 511 98 416 2.73e-38 145
MS.gene42921.t1 AT2G40150 28.338 367 232 9 167 516 71 423 4.14e-38 145
MS.gene42921.t1 AT3G11030 26.966 356 237 11 165 511 104 445 1.19e-37 144
MS.gene42921.t1 AT1G48880 27.368 380 211 12 160 517 106 442 5.81e-37 142
MS.gene42921.t1 AT3G55990 27.103 428 269 12 108 516 83 486 2.44e-36 141
MS.gene42921.t1 AT5G01620 27.293 458 266 22 77 514 47 457 2.63e-36 140
MS.gene42921.t1 AT5G01620 28.919 370 215 19 165 514 108 449 5.94e-36 139
MS.gene42921.t1 AT5G01620 28.919 370 215 19 165 514 108 449 5.94e-36 139
MS.gene42921.t1 AT5G58600 27.424 361 223 10 167 514 66 400 7.10e-36 138
MS.gene42921.t1 AT2G42570 28.933 356 207 12 167 514 47 364 8.02e-36 137
MS.gene42921.t1 AT2G40320 26.536 358 235 14 165 511 79 419 2.95e-35 137
MS.gene42921.t1 AT2G38320 28.000 375 218 18 165 514 57 404 6.10e-35 136
MS.gene42921.t1 AT2G37720 27.807 374 210 14 164 511 140 479 7.26e-35 137
MS.gene42921.t1 AT1G78710 28.926 363 199 15 167 514 38 356 4.50e-34 132
MS.gene42921.t1 AT3G62390 40.000 190 94 5 91 262 47 234 1.92e-33 132
MS.gene42921.t1 AT5G20590 32.411 253 143 7 164 400 138 378 2.84e-32 127
MS.gene42921.t1 AT3G06080 29.365 252 148 7 166 400 102 340 9.29e-30 120
MS.gene42921.t1 AT5G19160 28.980 245 156 6 166 399 98 335 7.09e-29 117
MS.gene42921.t1 AT2G30900 35.602 191 105 6 154 334 25 207 2.56e-28 114
MS.gene42921.t1 AT2G31110 35.638 188 108 5 156 338 32 211 3.01e-28 114
MS.gene42921.t1 AT2G40160 32.086 187 122 3 164 345 74 260 9.77e-28 113
MS.gene42921.t1 AT2G38320 27.778 342 196 17 197 514 7 321 2.43e-27 112
MS.gene42921.t1 AT5G64470 27.473 273 169 9 167 422 55 315 3.63e-27 112
MS.gene42921.t1 AT5G64470 27.586 261 161 8 167 410 55 304 4.28e-27 112
MS.gene42921.t1 AT5G06230 28.625 269 156 8 157 402 52 307 1.25e-23 101
MS.gene42921.t1 AT1G78710 48.889 90 43 2 167 255 31 118 1.21e-22 98.6
MS.gene42921.t1 AT5G58600 27.848 237 153 6 167 398 66 289 4.38e-22 97.1
MS.gene42921.t1 AT3G14850 25.887 282 166 12 238 511 2 248 1.90e-13 70.9

Find 131 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGTAAGTCCGGTATAATT+TGG 0.229681 6.4:-43083765 None:intergenic
ACCTTTCATAATTGAGGAAT+TGG 0.286895 6.4:-43082769 None:intergenic
TTAGGATCAGTGCTCCTATA+TGG 0.296985 6.4:-43084029 None:intergenic
ATGTATGAGCAACAGGTTAC+AGG 0.306715 6.4:+43083909 MS.gene42921:CDS
CCACTCACATCCTTAGTTAC+TGG 0.316877 6.4:-43082696 None:intergenic
CCTATTGGTTCAACTGTTCA+TGG 0.321255 6.4:+43082426 MS.gene42921:CDS
TAACACACCACTGGAAACTA+TGG 0.325407 6.4:-43082586 None:intergenic
GGCAAGACATTGGCTTTCAT+TGG 0.338972 6.4:+43083173 MS.gene42921:CDS
GTAGAGAGTTCACAAACTTC+TGG 0.339283 6.4:+43082462 MS.gene42921:CDS
GTGATCTGTACCATGGAAAT+TGG 0.343434 6.4:+43082976 MS.gene42921:CDS
CAAATCCGAAACCACTTTCT+CGG 0.344080 6.4:+43082337 MS.gene42921:CDS
CGCAGAATTGTCAGGGTAAT+GGG 0.351851 6.4:+43083057 MS.gene42921:CDS
TTGTTCTTTCATCTGGTCAT+TGG 0.356280 6.4:+43083595 MS.gene42921:CDS
ACTGTTCATGGTTATTTCAA+TGG 0.363276 6.4:+43082438 MS.gene42921:CDS
CGCTTCGATGTATGAGCAAC+AGG 0.367684 6.4:+43083902 MS.gene42921:CDS
CAGTTCTCATAATCCTTATC+AGG 0.368015 6.4:-43083083 None:intergenic
CCATGAACAGTTGAACCAAT+AGG 0.375978 6.4:-43082426 None:intergenic
TTTCGGATTTGAAGAACCTT+TGG 0.380304 6.4:-43082325 None:intergenic
GAAGTTTGCATATCAATGTT+TGG 0.381749 6.4:-43082564 None:intergenic
GTTAAATGAAAGGCATGAAT+TGG 0.394314 6.4:+43082289 None:intergenic
AACATTACCTTTCATAATTG+AGG 0.395469 6.4:-43082775 None:intergenic
TTGGTACTAGCCATTGGAAT+AGG 0.395908 6.4:-43082750 None:intergenic
ATAATCCGAGAAAGTGGTTT+CGG 0.398592 6.4:-43082342 None:intergenic
CTGTAACGATTGTTCGGATA+TGG 0.400519 6.4:+43083451 MS.gene42921:CDS
GATGTGGTTGTTCTTTCATC+TGG 0.403835 6.4:+43083588 MS.gene42921:CDS
TTCTGCGTCTGTGTCAATAC+AGG 0.412465 6.4:-43083041 None:intergenic
TGGCTTAGAAACTTCTGATT+CGG 0.414109 6.4:+43082716 MS.gene42921:CDS
CATGAACAGTTGAACCAATA+GGG 0.420888 6.4:-43082425 None:intergenic
TTCGGATTTGAAGAACCTTT+GGG 0.424140 6.4:-43082324 None:intergenic
AATTTCATGAACATCTCATC+AGG 0.424178 6.4:-43083552 None:intergenic
CTATTCACCCGATCATTATG+AGG 0.425666 6.4:+43083797 MS.gene42921:CDS
GACACAGACGCAGAATTGTC+AGG 0.428093 6.4:+43083049 MS.gene42921:CDS
ACGCAGAATTGTCAGGGTAA+TGG 0.429115 6.4:+43083056 MS.gene42921:CDS
CTCATAATGATCGGGTGAAT+AGG 0.435508 6.4:-43083796 None:intergenic
TGCTTGCACTGGTGCATGCC+GGG 0.439344 6.4:+43084098 MS.gene42921:CDS
TGCCGGGACCTGTGGATACT+TGG 0.440314 6.4:+43084114 MS.gene42921:CDS
ATCAACAGCATCGAAGCATT+TGG 0.448769 6.4:+43083702 MS.gene42921:CDS
AGTCCATGATGTGTATTCTT+TGG 0.459251 6.4:+43083222 MS.gene42921:CDS
AACACCGGTGGGTCATGCAC+TGG 0.459666 6.4:+43083831 MS.gene42921:CDS
CATGATGTGTATTCTTTGGC+AGG 0.461287 6.4:+43083226 MS.gene42921:CDS
GGAACGTAAAATTGTAAGTC+CGG 0.466692 6.4:-43083775 None:intergenic
CTGATAAGGATTATGAGAAC+TGG 0.478521 6.4:+43083084 MS.gene42921:CDS
GGCTTTCATTGGAGATTCTG+TGG 0.480446 6.4:+43083184 MS.gene42921:CDS
GGGTAATGGGAGGCCTGATA+AGG 0.480971 6.4:+43083070 MS.gene42921:CDS
CAACATCTGTAACGATTGTT+CGG 0.481747 6.4:+43083445 MS.gene42921:CDS
CAGGACTTGTTTGTGTATAA+CGG 0.485025 6.4:-43083017 None:intergenic
GAACAACCACATCAAATGTT+GGG 0.487105 6.4:-43083578 None:intergenic
TTACTGAAGCGTTTCAATAC+CGG 0.487641 6.4:+43083988 MS.gene42921:CDS
GAAAATAGTTCCAGTAACTA+AGG 0.487845 6.4:+43082686 MS.gene42921:CDS
TGCAAGCAATCCTGTGGTGG+TGG 0.489823 6.4:-43084083 None:intergenic
ATTACGAAACGAGGCCGAGA+TGG 0.490809 6.4:+43084056 MS.gene42921:CDS
CCATTCGACTTTGCTCCAGC+TGG 0.493371 6.4:+43083504 MS.gene42921:CDS
AGATGGAAGGCCACCACCAC+AGG 0.494437 6.4:+43084073 MS.gene42921:CDS
TACACATCATGGACTCCATC+TGG 0.495858 6.4:-43083214 None:intergenic
TCCTCCACCCTCATAATGAT+CGG 0.506582 6.4:-43083805 None:intergenic
CTGGTGCATGCCGGGACCTG+TGG 0.510659 6.4:+43084106 MS.gene42921:CDS
AGAACAACCACATCAAATGT+TGG 0.510831 6.4:-43083579 None:intergenic
CGACTTTGCTCCAGCTGGTG+TGG 0.512087 6.4:+43083509 MS.gene42921:CDS
TTCGCATGCCGAGACTTGTC+CGG 0.512674 6.4:-43083678 None:intergenic
GAAAATATAATCCGAGAAAG+TGG 0.515657 6.4:-43082348 None:intergenic
AAATGAAAGGCATGAATTGG+AGG 0.517381 6.4:+43082292 None:intergenic
TATAATTTGGATGCGTAACA+AGG 0.517964 6.4:-43083752 None:intergenic
CCTCCACCCTCATAATGATC+GGG 0.518353 6.4:-43083804 None:intergenic
GAGGAATTGGTACTAGCCAT+TGG 0.518967 6.4:-43082756 None:intergenic
TGTGGTGGCCGGACAAGTCT+CGG 0.519743 6.4:+43083670 MS.gene42921:CDS
TACCGGCATGATGGTCATCC+TGG 0.522022 6.4:+43084005 MS.gene42921:CDS
AATTGGATATATGATTCATC+GGG 0.526023 6.4:+43082993 MS.gene42921:CDS
CGTGGGATATCACACTGAAA+AGG 0.527660 6.4:-43083116 None:intergenic
TTGCTTGCACTGGTGCATGC+CGG 0.530780 6.4:+43084097 MS.gene42921:CDS
GTTACGCATCCAAATTATAC+CGG 0.531367 6.4:+43083756 MS.gene42921:CDS
AAATTGGATATATGATTCAT+CGG 0.533210 6.4:+43082992 MS.gene42921:CDS
CGGTGAAGCAGATTCACTCA+AGG 0.533844 6.4:-43082664 None:intergenic
ACACCGGTGGGTCATGCACT+GGG 0.541733 6.4:+43083832 MS.gene42921:CDS
AACTAATAGGGTTAAATGAA+AGG 0.542286 6.4:+43082279 None:intergenic
ATTATCACTTAACACACCAC+TGG 0.544862 6.4:-43082595 None:intergenic
ATCATTATGAGGGTGGAGGA+TGG 0.547403 6.4:+43083808 MS.gene42921:CDS
TTCTGTGGCTCGAAACCAGA+TGG 0.548549 6.4:+43083199 MS.gene42921:CDS
ATGGTCATCCTGGTCCATAT+AGG 0.551889 6.4:+43084015 MS.gene42921:CDS
TTCCAAGTATCCACAGGTCC+CGG 0.552005 6.4:-43084116 None:intergenic
CACCACAGGATTGCTTGCAC+TGG 0.552283 6.4:+43084087 MS.gene42921:CDS
GTGGTGGTGGCCTTCCATCT+CGG 0.552482 6.4:-43084070 None:intergenic
AACTTCCTCGGATCAAATCG+TGG 0.554784 6.4:-43083134 None:intergenic
ATCTTGAACAATGAGATAGT+TGG 0.557072 6.4:+43083639 MS.gene42921:CDS
CTGCCAAAGAATACACATCA+TGG 0.557593 6.4:-43083225 None:intergenic
ACCAATTCCTCAATTATGAA+AGG 0.561135 6.4:+43082768 MS.gene42921:CDS
GGTGGAGGATGGAACACCGG+TGG 0.567633 6.4:+43083819 MS.gene42921:CDS
TAGATCGAAGATGATACTGA+TGG 0.568064 6.4:+43083962 MS.gene42921:CDS
GCGTTTCAATACCGGCATGA+TGG 0.568138 6.4:+43083996 MS.gene42921:CDS
AATCATATATCCAATTTCCA+TGG 0.570027 6.4:-43082986 None:intergenic
CGTCTGTGTCAATACAGGGC+AGG 0.571653 6.4:-43083036 None:intergenic
CCCGATCATTATGAGGGTGG+AGG 0.574500 6.4:+43083804 MS.gene42921:CDS
TGGAGGACAATTGTGGTGGC+CGG 0.575277 6.4:+43083659 MS.gene42921:CDS
TTTCCCAGTGCATGACCCAC+CGG 0.576397 6.4:-43083835 None:intergenic
TTCAAAAGAACCTATTCCAA+TGG 0.579577 6.4:+43082740 MS.gene42921:CDS
TTGAACAATGAGATAGTTGG+AGG 0.581139 6.4:+43083642 MS.gene42921:CDS
ATCTCATTCCAAGTATCCAC+AGG 0.582412 6.4:-43084122 None:intergenic
CGAAACGAGGCCGAGATGGA+AGG 0.588106 6.4:+43084060 MS.gene42921:CDS
AATGAAAGGCATGAATTGGA+GGG 0.588865 6.4:+43082293 None:intergenic
AGGATTATGAGAACTGGCGA+TGG 0.593464 6.4:+43083090 MS.gene42921:CDS
AAAGTTAAACCTCTTGCCCC+CGG 0.596651 6.4:+43083855 MS.gene42921:CDS
GCTTATGAGAGGCAAGACAT+TGG 0.598849 6.4:+43083163 MS.gene42921:CDS
TATTCACCCGATCATTATGA+GGG 0.604395 6.4:+43083798 MS.gene42921:CDS
GTGGAGGATGGAACACCGGT+GGG 0.604904 6.4:+43083820 MS.gene42921:CDS
ACTTCCTCGGATCAAATCGT+GGG 0.605348 6.4:-43083133 None:intergenic
TTGTTCGGATATGGTCGTCA+TGG 0.605364 6.4:+43083460 MS.gene42921:CDS
TGGAGGGTTGCATCTCCCAA+AGG 0.609098 6.4:+43082309 MS.gene42921:CDS
GGTGAAGCAGATTCACTCAA+GGG 0.615265 6.4:-43082663 None:intergenic
GACCAGGATGACCATCATGC+CGG 0.619809 6.4:-43084007 None:intergenic
ATTTCATGAACATCTCATCA+GGG 0.622889 6.4:-43083551 None:intergenic
TCTGCGTCTGTGTCAATACA+GGG 0.623845 6.4:-43083040 None:intergenic
TCAGTGCTCCTATATGGACC+AGG 0.625966 6.4:-43084023 None:intergenic
TTTCATGAACATCTCATCAG+GGG 0.631554 6.4:-43083550 None:intergenic
ATTTCTCCCAACATTTGATG+TGG 0.634735 6.4:+43083572 MS.gene42921:CDS
GAGGGTGGAGGATGGAACAC+CGG 0.634985 6.4:+43083816 MS.gene42921:CDS
AGGGAACTCGCAACATGCAG+CGG 0.641200 6.4:+43083409 MS.gene42921:CDS
AGATAGTTGGAGGACAATTG+TGG 0.641699 6.4:+43083652 MS.gene42921:CDS
CCAGCTGGAGCAAAGTCGAA+TGG 0.642013 6.4:-43083504 None:intergenic
ATATCCCACGATTTGATCCG+AGG 0.645127 6.4:+43083129 MS.gene42921:CDS
GTAGGTTGTGATCTGTACCA+TGG 0.645340 6.4:+43082969 MS.gene42921:intron
CAGTGCAAGCAATCCTGTGG+TGG 0.648600 6.4:-43084086 None:intergenic
TCACCCGATCATTATGAGGG+TGG 0.649440 6.4:+43083801 MS.gene42921:CDS
CCAGTAACTAAGGATGTGAG+TGG 0.650449 6.4:+43082696 MS.gene42921:CDS
ACACAGACGCAGAATTGTCA+GGG 0.651197 6.4:+43083050 MS.gene42921:CDS
CAAACTTCCATAGTTTCCAG+TGG 0.658747 6.4:+43082579 MS.gene42921:CDS
ATAATTTGGATGCGTAACAA+GGG 0.666704 6.4:-43083751 None:intergenic
CCTAACAAAATTACGAAACG+AGG 0.668392 6.4:+43084047 MS.gene42921:CDS
TAGTTGGAGGACAATTGTGG+TGG 0.686111 6.4:+43083655 MS.gene42921:CDS
ATCATTAAGAGAGAATACGA+AGG 0.696707 6.4:+43084155 MS.gene42921:CDS
GAAGCAGATTCACTCAAGGG+TGG 0.697647 6.4:-43082660 None:intergenic
AGAATTGTCAGGGTAATGGG+AGG 0.700086 6.4:+43083060 MS.gene42921:CDS
CACCAGTGCAAGCAATCCTG+TGG 0.706219 6.4:-43084089 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATGCAAATAAAATTTGTA+TGG - chr6.4:43083263-43083282 None:intergenic 15.0%
!! AAATTGGATATATGATTCAT+CGG + chr6.4:43082992-43083011 MS.gene42921:CDS 20.0%
!! TATTTGCATAACTAATAGAA+TGG + chr6.4:43083272-43083291 MS.gene42921:intron 20.0%
! AACATTACCTTTCATAATTG+AGG - chr6.4:43082778-43082797 None:intergenic 25.0%
! AATCATATATCCAATTTCCA+TGG - chr6.4:43082989-43083008 None:intergenic 25.0%
! AATTGGATATATGATTCATC+GGG + chr6.4:43082993-43083012 MS.gene42921:CDS 25.0%
! AGTAATTTCAAGACAATCAA+TGG - chr6.4:43082897-43082916 None:intergenic 25.0%
! TTAATTGCAAACGATATTTC+AGG + chr6.4:43083368-43083387 MS.gene42921:intron 25.0%
! TTGTAAGAAAGAATTTCACA+TGG + chr6.4:43082861-43082880 MS.gene42921:intron 25.0%
!! TATTCATAACTTTTGCTTCA+TGG + chr6.4:43082388-43082407 MS.gene42921:CDS 25.0%
!! TTAGTTACTGGAACTATTTT+CGG - chr6.4:43082687-43082706 None:intergenic 25.0%
!!! AGTTGTTTTTATTGTCAAGT+AGG + chr6.4:43082951-43082970 MS.gene42921:intron 25.0%
!!! TTTTTTCTTTCATACCCTAT+TGG + chr6.4:43082411-43082430 MS.gene42921:CDS 25.0%
AATTTCATGAACATCTCATC+AGG - chr6.4:43083555-43083574 None:intergenic 30.0%
ACCAATTCCTCAATTATGAA+AGG + chr6.4:43082768-43082787 MS.gene42921:CDS 30.0%
ACCTTTCATAATTGAGGAAT+TGG - chr6.4:43082772-43082791 None:intergenic 30.0%
ATAATTTGGATGCGTAACAA+GGG - chr6.4:43083754-43083773 None:intergenic 30.0%
ATCATTAAGAGAGAATACGA+AGG + chr6.4:43084155-43084174 MS.gene42921:CDS 30.0%
ATCTTGAACAATGAGATAGT+TGG + chr6.4:43083639-43083658 MS.gene42921:CDS 30.0%
ATTGTAAGTCCGGTATAATT+TGG - chr6.4:43083768-43083787 None:intergenic 30.0%
ATTTCATGAACATCTCATCA+GGG - chr6.4:43083554-43083573 None:intergenic 30.0%
GAAAATAGTTCCAGTAACTA+AGG + chr6.4:43082686-43082705 MS.gene42921:CDS 30.0%
GAAAATATAATCCGAGAAAG+TGG - chr6.4:43082351-43082370 None:intergenic 30.0%
GAAGTTTGCATATCAATGTT+TGG - chr6.4:43082567-43082586 None:intergenic 30.0%
GATACAAACACTAACGATTA+CGG - chr6.4:43082841-43082860 None:intergenic 30.0%
TATAATTTGGATGCGTAACA+AGG - chr6.4:43083755-43083774 None:intergenic 30.0%
TTCAAAAGAACCTATTCCAA+TGG + chr6.4:43082740-43082759 MS.gene42921:CDS 30.0%
! ACTGTTCATGGTTATTTCAA+TGG + chr6.4:43082438-43082457 MS.gene42921:CDS 30.0%
! TATATTTTCAGTTGGAGTAG+TGG + chr6.4:43082362-43082381 MS.gene42921:CDS 30.0%
! TCTCGGATTATATTTTCAGT+TGG + chr6.4:43082354-43082373 MS.gene42921:CDS 30.0%
!!! TGATTTGCTTTGTTCTCTTT+TGG + chr6.4:43082802-43082821 MS.gene42921:intron 30.0%
AGAACAACCACATCAAATGT+TGG - chr6.4:43083582-43083601 None:intergenic 35.0%
AGTCCATGATGTGTATTCTT+TGG + chr6.4:43083222-43083241 MS.gene42921:CDS 35.0%
ATAAGCTCCAAAAACTTCCT+CGG - chr6.4:43083149-43083168 None:intergenic 35.0%
ATAATCCGAGAAAGTGGTTT+CGG - chr6.4:43082345-43082364 None:intergenic 35.0%
ATTATCACTTAACACACCAC+TGG - chr6.4:43082598-43082617 None:intergenic 35.0%
ATTTCTCCCAACATTTGATG+TGG + chr6.4:43083572-43083591 MS.gene42921:CDS 35.0%
CAACATCTGTAACGATTGTT+CGG + chr6.4:43083445-43083464 MS.gene42921:CDS 35.0%
CAGTTCTCATAATCCTTATC+AGG - chr6.4:43083086-43083105 None:intergenic 35.0%
CATGAACAGTTGAACCAATA+GGG - chr6.4:43082428-43082447 None:intergenic 35.0%
CCTAACAAAATTACGAAACG+AGG + chr6.4:43084047-43084066 MS.gene42921:CDS 35.0%
CTGATAAGGATTATGAGAAC+TGG + chr6.4:43083084-43083103 MS.gene42921:CDS 35.0%
GAACAACCACATCAAATGTT+GGG - chr6.4:43083581-43083600 None:intergenic 35.0%
GGAACGTAAAATTGTAAGTC+CGG - chr6.4:43083778-43083797 None:intergenic 35.0%
GTTACGCATCCAAATTATAC+CGG + chr6.4:43083756-43083775 MS.gene42921:CDS 35.0%
TAGAATGGTTACATACGTGT+TGG + chr6.4:43083287-43083306 MS.gene42921:intron 35.0%
TAGATCGAAGATGATACTGA+TGG + chr6.4:43083962-43083981 MS.gene42921:CDS 35.0%
TATTCACCCGATCATTATGA+GGG + chr6.4:43083798-43083817 MS.gene42921:CDS 35.0%
TGGCTTAGAAACTTCTGATT+CGG + chr6.4:43082716-43082735 MS.gene42921:CDS 35.0%
TTCGGATTTGAAGAACCTTT+GGG - chr6.4:43082327-43082346 None:intergenic 35.0%
TTGAACAATGAGATAGTTGG+AGG + chr6.4:43083642-43083661 MS.gene42921:CDS 35.0%
TTGTTCTTTCATCTGGTCAT+TGG + chr6.4:43083595-43083614 MS.gene42921:CDS 35.0%
TTTCATGAACATCTCATCAG+GGG - chr6.4:43083553-43083572 None:intergenic 35.0%
TTTCGGATTTGAAGAACCTT+TGG - chr6.4:43082328-43082347 None:intergenic 35.0%
! ATTTGATCCGAGGAAGTTTT+TGG + chr6.4:43083139-43083158 MS.gene42921:CDS 35.0%
! CAGGACTTGTTTGTGTATAA+CGG - chr6.4:43083020-43083039 None:intergenic 35.0%
! CCTCGTTTCGTAATTTTGTT+AGG - chr6.4:43084050-43084069 None:intergenic 35.0%
! TTACTGAAGCGTTTCAATAC+CGG + chr6.4:43083988-43084007 MS.gene42921:CDS 35.0%
! TTATTTTCCACCAATTCACC+GGG - chr6.4:43083876-43083895 None:intergenic 35.0%
! TTTTAACCGTGCAGCAAAAA+AGG + chr6.4:43083932-43083951 MS.gene42921:CDS 35.0%
!! CTTATTTTCCACCAATTCAC+CGG - chr6.4:43083877-43083896 None:intergenic 35.0%
!!! AAGTTTTTGGAGCTTATGAG+AGG + chr6.4:43083152-43083171 MS.gene42921:CDS 35.0%
AGATAGTTGGAGGACAATTG+TGG + chr6.4:43083652-43083671 MS.gene42921:CDS 40.0%
ATCTCATTCCAAGTATCCAC+AGG - chr6.4:43084125-43084144 None:intergenic 40.0%
ATGTATGAGCAACAGGTTAC+AGG + chr6.4:43083909-43083928 MS.gene42921:CDS 40.0%
CAAACTTCCATAGTTTCCAG+TGG + chr6.4:43082579-43082598 MS.gene42921:CDS 40.0%
CAAATCCGAAACCACTTTCT+CGG + chr6.4:43082337-43082356 MS.gene42921:CDS 40.0%
CATGATGTGTATTCTTTGGC+AGG + chr6.4:43083226-43083245 MS.gene42921:CDS 40.0%
CCATGAACAGTTGAACCAAT+AGG - chr6.4:43082429-43082448 None:intergenic 40.0%
CTATTCACCCGATCATTATG+AGG + chr6.4:43083797-43083816 MS.gene42921:CDS 40.0%
CTCATAATGATCGGGTGAAT+AGG - chr6.4:43083799-43083818 None:intergenic 40.0%
CTGCCAAAGAATACACATCA+TGG - chr6.4:43083228-43083247 None:intergenic 40.0%
CTGTAACGATTGTTCGGATA+TGG + chr6.4:43083451-43083470 MS.gene42921:CDS 40.0%
GATGTGGTTGTTCTTTCATC+TGG + chr6.4:43083588-43083607 MS.gene42921:CDS 40.0%
GTAGAGAGTTCACAAACTTC+TGG + chr6.4:43082462-43082481 MS.gene42921:CDS 40.0%
GTAGAGGAACCGAAAAATCA+GGG + chr6.4:43083390-43083409 MS.gene42921:CDS 40.0%
GTGATCTGTACCATGGAAAT+TGG + chr6.4:43082976-43082995 MS.gene42921:CDS 40.0%
TAACACACCACTGGAAACTA+TGG - chr6.4:43082589-43082608 None:intergenic 40.0%
TTAGGATCAGTGCTCCTATA+TGG - chr6.4:43084032-43084051 None:intergenic 40.0%
TTGGTACTAGCCATTGGAAT+AGG - chr6.4:43082753-43082772 None:intergenic 40.0%
! ATCAACAGCATCGAAGCATT+TGG + chr6.4:43083702-43083721 MS.gene42921:CDS 40.0%
! GCAAACGATATTTCAGGTAG+AGG + chr6.4:43083374-43083393 MS.gene42921:intron 40.0%
! TATTTTCCACCAATTCACCG+GGG - chr6.4:43083875-43083894 None:intergenic 40.0%
! TTGCGAGTTCCCTGATTTTT+CGG - chr6.4:43083402-43083421 None:intergenic 40.0%
!! CCTATTGGTTCAACTGTTCA+TGG + chr6.4:43082426-43082445 MS.gene42921:CDS 40.0%
!!! TTGTCTCCTTTTTTGCTGCA+CGG - chr6.4:43083941-43083960 None:intergenic 40.0%
AAAGTTAAACCTCTTGCCCC+CGG + chr6.4:43083855-43083874 MS.gene42921:CDS 45.0%
AACTTCCTCGGATCAAATCG+TGG - chr6.4:43083137-43083156 None:intergenic 45.0%
ACACAGACGCAGAATTGTCA+GGG + chr6.4:43083050-43083069 MS.gene42921:CDS 45.0%
ACGCAGAATTGTCAGGGTAA+TGG + chr6.4:43083056-43083075 MS.gene42921:CDS 45.0%
ACTTCCTCGGATCAAATCGT+GGG - chr6.4:43083136-43083155 None:intergenic 45.0%
AGGATTATGAGAACTGGCGA+TGG + chr6.4:43083090-43083109 MS.gene42921:CDS 45.0%
ATATCCCACGATTTGATCCG+AGG + chr6.4:43083129-43083148 MS.gene42921:CDS 45.0%
ATCATTATGAGGGTGGAGGA+TGG + chr6.4:43083808-43083827 MS.gene42921:CDS 45.0%
ATGGTCATCCTGGTCCATAT+AGG + chr6.4:43084015-43084034 MS.gene42921:CDS 45.0%
CCACTCACATCCTTAGTTAC+TGG - chr6.4:43082699-43082718 None:intergenic 45.0%
CCAGTAACTAAGGATGTGAG+TGG + chr6.4:43082696-43082715 MS.gene42921:CDS 45.0%
CGCAGAATTGTCAGGGTAAT+GGG + chr6.4:43083057-43083076 MS.gene42921:CDS 45.0%
CGTGGGATATCACACTGAAA+AGG - chr6.4:43083119-43083138 None:intergenic 45.0%
GAGGAATTGGTACTAGCCAT+TGG - chr6.4:43082759-43082778 None:intergenic 45.0%
GCTTATGAGAGGCAAGACAT+TGG + chr6.4:43083163-43083182 MS.gene42921:CDS 45.0%
GGCTTTCATTGGAGATTCTG+TGG + chr6.4:43083184-43083203 MS.gene42921:CDS 45.0%
GGTAGAGGAACCGAAAAATC+AGG + chr6.4:43083389-43083408 MS.gene42921:intron 45.0%
GGTGAAGCAGATTCACTCAA+GGG - chr6.4:43082666-43082685 None:intergenic 45.0%
GTAGGTTGTGATCTGTACCA+TGG + chr6.4:43082969-43082988 MS.gene42921:intron 45.0%
TACACATCATGGACTCCATC+TGG - chr6.4:43083217-43083236 None:intergenic 45.0%
TAGTTGGAGGACAATTGTGG+TGG + chr6.4:43083655-43083674 MS.gene42921:CDS 45.0%
TCAGTGTCGTGTCTAGTATC+TGG + chr6.4:43083312-43083331 MS.gene42921:intron 45.0%
TCCTCCACCCTCATAATGAT+CGG - chr6.4:43083808-43083827 None:intergenic 45.0%
TCTGCGTCTGTGTCAATACA+GGG - chr6.4:43083043-43083062 None:intergenic 45.0%
TGTCTAGTATCTGGTGTTCG+TGG + chr6.4:43083321-43083340 MS.gene42921:intron 45.0%
TTCTGCGTCTGTGTCAATAC+AGG - chr6.4:43083044-43083063 None:intergenic 45.0%
TTGTTCGGATATGGTCGTCA+TGG + chr6.4:43083460-43083479 MS.gene42921:CDS 45.0%
! ATTTTCCACCAATTCACCGG+GGG - chr6.4:43083874-43083893 None:intergenic 45.0%
! TAGATTTTCTCCACACCAGC+TGG - chr6.4:43083522-43083541 None:intergenic 45.0%
!! AGAATTGTCAGGGTAATGGG+AGG + chr6.4:43083060-43083079 MS.gene42921:CDS 45.0%
!! GGCAAGACATTGGCTTTCAT+TGG + chr6.4:43083173-43083192 MS.gene42921:CDS 45.0%
ATTACGAAACGAGGCCGAGA+TGG + chr6.4:43084056-43084075 MS.gene42921:CDS 50.0%
CCTCCACCCTCATAATGATC+GGG - chr6.4:43083807-43083826 None:intergenic 50.0%
CGCTTCGATGTATGAGCAAC+AGG + chr6.4:43083902-43083921 MS.gene42921:CDS 50.0%
CGGTGAAGCAGATTCACTCA+AGG - chr6.4:43082667-43082686 None:intergenic 50.0%
CTAGTATCTGGTGTTCGTGG+CGG + chr6.4:43083324-43083343 MS.gene42921:intron 50.0%
GAAGCAGATTCACTCAAGGG+TGG - chr6.4:43082663-43082682 None:intergenic 50.0%
GACACAGACGCAGAATTGTC+AGG + chr6.4:43083049-43083068 MS.gene42921:CDS 50.0%
GCGTTTCAATACCGGCATGA+TGG + chr6.4:43083996-43084015 MS.gene42921:CDS 50.0%
TCACCCGATCATTATGAGGG+TGG + chr6.4:43083801-43083820 MS.gene42921:CDS 50.0%
TCAGTGCTCCTATATGGACC+AGG - chr6.4:43084026-43084045 None:intergenic 50.0%
TTCCAAGTATCCACAGGTCC+CGG - chr6.4:43084119-43084138 None:intergenic 50.0%
TTCTGTGGCTCGAAACCAGA+TGG + chr6.4:43083199-43083218 MS.gene42921:CDS 50.0%
AGGGAACTCGCAACATGCAG+CGG + chr6.4:43083409-43083428 MS.gene42921:CDS 55.0%
CACCACAGGATTGCTTGCAC+TGG + chr6.4:43084087-43084106 MS.gene42921:CDS 55.0%
CACCAGTGCAAGCAATCCTG+TGG - chr6.4:43084092-43084111 None:intergenic 55.0%
CAGTGCAAGCAATCCTGTGG+TGG - chr6.4:43084089-43084108 None:intergenic 55.0%
CCAGCTGGAGCAAAGTCGAA+TGG - chr6.4:43083507-43083526 None:intergenic 55.0%
CCATTCGACTTTGCTCCAGC+TGG + chr6.4:43083504-43083523 MS.gene42921:CDS 55.0%
CCCGATCATTATGAGGGTGG+AGG + chr6.4:43083804-43083823 MS.gene42921:CDS 55.0%
CGTCTGTGTCAATACAGGGC+AGG - chr6.4:43083039-43083058 None:intergenic 55.0%
GACCAGGATGACCATCATGC+CGG - chr6.4:43084010-43084029 None:intergenic 55.0%
TACCGGCATGATGGTCATCC+TGG + chr6.4:43084005-43084024 MS.gene42921:CDS 55.0%
TGCAAGCAATCCTGTGGTGG+TGG - chr6.4:43084086-43084105 None:intergenic 55.0%
TGGAGGACAATTGTGGTGGC+CGG + chr6.4:43083659-43083678 MS.gene42921:CDS 55.0%
TGGAGGGTTGCATCTCCCAA+AGG + chr6.4:43082309-43082328 MS.gene42921:CDS 55.0%
TTCGCATGCCGAGACTTGTC+CGG - chr6.4:43083681-43083700 None:intergenic 55.0%
TTTCCCAGTGCATGACCCAC+CGG - chr6.4:43083838-43083857 None:intergenic 55.0%
! TTGCTTGCACTGGTGCATGC+CGG + chr6.4:43084097-43084116 MS.gene42921:CDS 55.0%
!! GGGTAATGGGAGGCCTGATA+AGG + chr6.4:43083070-43083089 MS.gene42921:CDS 55.0%
AACACCGGTGGGTCATGCAC+TGG + chr6.4:43083831-43083850 MS.gene42921:CDS 60.0%
ACACCGGTGGGTCATGCACT+GGG + chr6.4:43083832-43083851 MS.gene42921:CDS 60.0%
ACCAATTCACCGGGGGCAAG+AGG - chr6.4:43083867-43083886 None:intergenic 60.0%
ACCTCTTGCCCCCGGTGAAT+TGG + chr6.4:43083863-43083882 MS.gene42921:CDS 60.0%
AGATGGAAGGCCACCACCAC+AGG + chr6.4:43084073-43084092 MS.gene42921:CDS 60.0%
CGAAACGAGGCCGAGATGGA+AGG + chr6.4:43084060-43084079 MS.gene42921:CDS 60.0%
CGACTTTGCTCCAGCTGGTG+TGG + chr6.4:43083509-43083528 MS.gene42921:CDS 60.0%
GAGGGTGGAGGATGGAACAC+CGG + chr6.4:43083816-43083835 MS.gene42921:CDS 60.0%
GTGGAGGATGGAACACCGGT+GGG + chr6.4:43083820-43083839 MS.gene42921:CDS 60.0%
TCTTGCCCCCGGTGAATTGG+TGG + chr6.4:43083866-43083885 MS.gene42921:CDS 60.0%
TGCCGGGACCTGTGGATACT+TGG + chr6.4:43084114-43084133 MS.gene42921:CDS 60.0%
TGTGGTGGCCGGACAAGTCT+CGG + chr6.4:43083670-43083689 MS.gene42921:CDS 60.0%
! TGCTTGCACTGGTGCATGCC+GGG + chr6.4:43084098-43084117 MS.gene42921:CDS 60.0%
!! GTGGTGGTGGCCTTCCATCT+CGG - chr6.4:43084073-43084092 None:intergenic 60.0%
GGTGGAGGATGGAACACCGG+TGG + chr6.4:43083819-43083838 MS.gene42921:CDS 65.0%
CTGGTGCATGCCGGGACCTG+TGG + chr6.4:43084106-43084125 MS.gene42921:CDS 70.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 43082294 43084193 43082294 ID=MS.gene42921
chr6.4 mRNA 43082294 43084193 43082294 ID=MS.gene42921.t1;Parent=MS.gene42921
chr6.4 exon 43082294 43082789 43082294 ID=MS.gene42921.t1.exon1;Parent=MS.gene42921.t1
chr6.4 CDS 43082294 43082789 43082294 ID=cds.MS.gene42921.t1;Parent=MS.gene42921.t1
chr6.4 exon 43082973 43083247 43082973 ID=MS.gene42921.t1.exon2;Parent=MS.gene42921.t1
chr6.4 CDS 43082973 43083247 43082973 ID=cds.MS.gene42921.t1;Parent=MS.gene42921.t1
chr6.4 exon 43083390 43084193 43083390 ID=MS.gene42921.t1.exon3;Parent=MS.gene42921.t1
chr6.4 CDS 43083390 43084193 43083390 ID=cds.MS.gene42921.t1;Parent=MS.gene42921.t1
Gene Sequence

>MS.gene42921

ATGAAAGGCATGAATTGGAGGGTTGCATCTCCCAAAGGTTCTTCAAATCCGAAACCACTTTCTCGGATTATATTTTCAGTTGGAGTAGTGGCAGTATTCATAACTTTTGCTTCATGGTTTTTTCTTTCATACCCTATTGGTTCAACTGTTCATGGTTATTTCAATGGTGTAGAGAGTTCACAAACTTCTGGTTTATCAGTCTCTCAGAAAATCAATACAACTTCTGTTGATCTTCACAAGAATTCAACTTTAGATTCAGTAGATAATAAACCAAACATTGATATGCAAACTTCCATAGTTTCCAGTGGTGTGTTAAGTGATAATAGTAGCAAGATAGAACAAATTGATACTAATTCAAATTCGCAACCACCCTTGAGTGAATCTGCTTCACCGAAAATAGTTCCAGTAACTAAGGATGTGAGTGGCTTAGAAACTTCTGATTCGGCTTCAAAAGAACCTATTCCAATGGCTAGTACCAATTCCTCAATTATGAAAGGTAATGTTAGTTTGATTTGCTTTGTTCTCTTTTGGAAATACAATACAGCCGTAATCGTTAGTGTTTGTATCTTGTAAGAAAGAATTTCACATGGACAATTCTTTCCATTGATTGTCTTGAAATTACTCTACAAGTTTTTATATCTTATCTGCTTTTTGAATAGTTGTTTTTATTGTCAAGTAGGTTGTGATCTGTACCATGGAAATTGGATATATGATTCATCGGGACCGTTATACACAAACAAGTCCTGCCCTGTATTGACACAGACGCAGAATTGTCAGGGTAATGGGAGGCCTGATAAGGATTATGAGAACTGGCGATGGAAGCCTTTTCAGTGTGATATCCCACGATTTGATCCGAGGAAGTTTTTGGAGCTTATGAGAGGCAAGACATTGGCTTTCATTGGAGATTCTGTGGCTCGAAACCAGATGGAGTCCATGATGTGTATTCTTTGGCAGGTCATTTTCATTCCATACAAATTTTATTTGCATAACTAATAGAATGGTTACATACGTGTTGGTGTCAGTGTCGTGTCTAGTATCTGGTGTTCGTGGCGGTGCTTCGTAGAAATTAAATACTTAATTGCAAACGATATTTCAGGTAGAGGAACCGAAAAATCAGGGAACTCGCAACATGCAGCGGTATTATTTTGAGTCAACATCTGTAACGATTGTTCGGATATGGTCGTCATGGCTTGTCAAACACAATTCAGAACCATTCGACTTTGCTCCAGCTGGTGTGGAGAAAATCTATCTTGAATCCCCTGATGAGATGTTCATGAAATTTCTCCCAACATTTGATGTGGTTGTTCTTTCATCTGGTCATTGGTTTACTAAACAATCAGTATACATCTTGAACAATGAGATAGTTGGAGGACAATTGTGGTGGCCGGACAAGTCTCGGCATGCGAAGATCAACAGCATCGAAGCATTTGGTATATCTGTTGAAACAATTATCACTGCCCTTGTTACGCATCCAAATTATACCGGACTTACAATTTTACGTTCCTATTCACCCGATCATTATGAGGGTGGAGGATGGAACACCGGTGGGTCATGCACTGGGAAAGTTAAACCTCTTGCCCCCGGTGAATTGGTGGAAAATAAGTATCTCGCTTCGATGTATGAGCAACAGGTTACAGGTTTTAACCGTGCAGCAAAAAAGGAGACAAATAGATCGAAGATGATACTGATGGATATTACTGAAGCGTTTCAATACCGGCATGATGGTCATCCTGGTCCATATAGGAGCACTGATCCTAACAAAATTACGAAACGAGGCCGAGATGGAAGGCCACCACCACAGGATTGCTTGCACTGGTGCATGCCGGGACCTGTGGATACTTGGAATGAGATTGTGTTTGAAATCATTAAGAGAGAATACGAAGGCAATAACATATCATGA
Protein sequence

>MS.gene42921.t1

MKGMNWRVASPKGSSNPKPLSRIIFSVGVVAVFITFASWFFLSYPIGSTVHGYFNGVESSQTSGLSVSQKINTTSVDLHKNSTLDSVDNKPNIDMQTSIVSSGVLSDNSSKIEQIDTNSNSQPPLSESASPKIVPVTKDVSGLETSDSASKEPIPMASTNSSIMKGCDLYHGNWIYDSSGPLYTNKSCPVLTQTQNCQGNGRPDKDYENWRWKPFQCDIPRFDPRKFLELMRGKTLAFIGDSVARNQMESMMCILWQVEEPKNQGTRNMQRYYFESTSVTIVRIWSSWLVKHNSEPFDFAPAGVEKIYLESPDEMFMKFLPTFDVVVLSSGHWFTKQSVYILNNEIVGGQLWWPDKSRHAKINSIEAFGISVETIITALVTHPNYTGLTILRSYSPDHYEGGGWNTGGSCTGKVKPLAPGELVENKYLASMYEQQVTGFNRAAKKETNRSKMILMDITEAFQYRHDGHPGPYRSTDPNKITKRGRDGRPPPQDCLHWCMPGPVDTWNEIVFEIIKREYEGNNIS