Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062330.t1 | XP_003617477.2 | 98.1 | 157 | 3 | 0 | 1 | 157 | 1 | 157 | 3.50E-79 | 305.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062330.t1 | Q9PV94 | 60.1 | 148 | 55 | 2 | 1 | 147 | 1 | 145 | 5.4e-41 | 169.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062330.t1 | G7K3F8 | 98.1 | 157 | 3 | 0 | 1 | 157 | 1 | 157 | 2.5e-79 | 305.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051925 | MS.gene062330 | 0.812032 | 5.20E-51 | -1.69E-46 |
| MS.gene051927 | MS.gene062330 | 0.80585 | 1.09E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene062330 | MS.gene067039 | PPI |
| MS.gene062330 | MS.gene75567 | PPI |
| MS.gene062330 | MS.gene045227 | PPI |
| MS.gene062330 | MS.gene79126 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062330.t1 | MTR_5g092010 | 96.797 | 281 | 4 | 1 | 1 | 281 | 1 | 276 | 4.78e-180 | 496 |
| MS.gene062330.t1 | MTR_8g080090 | 94.253 | 174 | 5 | 2 | 1 | 173 | 1 | 170 | 9.40e-94 | 278 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062330.t1 | AT5G44500 | 84.868 | 152 | 23 | 0 | 1 | 152 | 1 | 152 | 4.84e-90 | 268 |
| MS.gene062330.t1 | AT5G44500 | 84.868 | 152 | 23 | 0 | 1 | 152 | 1 | 152 | 4.84e-90 | 268 |
| MS.gene062330.t1 | AT4G20440 | 88.816 | 152 | 16 | 1 | 1 | 152 | 1 | 151 | 1.06e-82 | 249 |
| MS.gene062330.t1 | AT4G20440 | 88.816 | 152 | 16 | 1 | 1 | 152 | 1 | 151 | 1.06e-82 | 249 |
| MS.gene062330.t1 | AT4G20440 | 88.816 | 152 | 16 | 1 | 1 | 152 | 1 | 151 | 1.06e-82 | 249 |
| MS.gene062330.t1 | AT4G20440 | 88.816 | 152 | 16 | 1 | 1 | 152 | 1 | 151 | 1.06e-82 | 249 |
| MS.gene062330.t1 | AT4G20440 | 88.816 | 152 | 16 | 1 | 1 | 152 | 1 | 151 | 1.06e-82 | 249 |
Find 146 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTATGCCGCCGGGGCAATT+TGG | 0.120570 | 5.1:-73590596 | MS.gene062330:CDS |
| GGAAGTGGTGTTCCGGTTTA+TGG | 0.187174 | 5.1:-73590410 | MS.gene062330:CDS |
| CACTGTTGCTGCTGTTGATT+TGG | 0.210852 | 5.1:+73590350 | None:intergenic |
| GTTGATGTATTGAAGCATTT+TGG | 0.240715 | 5.1:+73591153 | None:intergenic |
| CTATGCCGCCGGGGCAATTT+GGG | 0.264839 | 5.1:-73590595 | MS.gene062330:CDS |
| TGCTGTTGATTTGGAGCATT+TGG | 0.292429 | 5.1:+73590359 | None:intergenic |
| AGCCATTGCAGCAGCATTTA+CGG | 0.293446 | 5.1:+73590880 | None:intergenic |
| GGTATGCCACCTCCTCAGTA+TGG | 0.303881 | 5.1:-73590542 | MS.gene062330:CDS |
| CAAGCTCAACCTGGTCTTGC+TGG | 0.320924 | 5.1:-73590803 | MS.gene062330:CDS |
| GCTTTCGAACGAGACTCTTC+AGG | 0.340925 | 5.1:+73590902 | None:intergenic |
| TCCTCCTGGAAGTGGTGTTC+CGG | 0.346552 | 5.1:-73590417 | MS.gene062330:CDS |
| ACTCGGTTTGGTTCTACTTC+GGG | 0.350273 | 5.1:-73590966 | MS.gene062330:CDS |
| CCAGGTTGAGCTTGAATAAC+CGG | 0.357485 | 5.1:+73590812 | None:intergenic |
| GGTGGTCCTCCACCGCAATT+TGG | 0.359308 | 5.1:-73590563 | MS.gene062330:CDS |
| TTGACCAGGTGGACCTTGAC+CGG | 0.368468 | 5.1:+73590679 | None:intergenic |
| CCTCCTGGTCAGATGGTTAG+AGG | 0.388518 | 5.1:-73590497 | MS.gene062330:CDS |
| CCTGGTATGCCTCCTCCTCC+TGG | 0.388630 | 5.1:-73590431 | MS.gene062330:CDS |
| CGAGGCGGAGGCTGCATTCC+AGG | 0.396888 | 5.1:+73590455 | None:intergenic |
| TGTCCAGGATGTCCAGGATA+TGG | 0.405313 | 5.1:+73590653 | None:intergenic |
| CGAGTGTGCGGCGGTCTTCA+CGG | 0.406911 | 5.1:+73590984 | None:intergenic |
| TCAGTATGGGCAGAGACCTA+TGG | 0.417999 | 5.1:-73590528 | MS.gene062330:CDS |
| TGACCGGGCGGACGCATAAC+CGG | 0.420979 | 5.1:+73590695 | None:intergenic |
| GCAATGGCTGGTCCTGGAAT+TGG | 0.421320 | 5.1:-73590866 | MS.gene062330:CDS |
| CGACGAGTTGACGACCGTCT+TGG | 0.425249 | 5.1:+73591110 | None:intergenic |
| CACTCGGTTTGGTTCTACTT+CGG | 0.427788 | 5.1:-73590967 | MS.gene062330:CDS |
| ATTGGTCGTGCTGCGGGTAG+AGG | 0.433842 | 5.1:-73590848 | MS.gene062330:CDS |
| CCCGCAGCACGACCAATTCC+AGG | 0.437550 | 5.1:+73590854 | None:intergenic |
| ATGCCATATCCTGGACATCC+TGG | 0.445798 | 5.1:-73590656 | MS.gene062330:CDS |
| CCAAATTGCCCCGGCGGCAT+AGG | 0.449138 | 5.1:+73590596 | None:intergenic |
| GTTATGCGTCCGCCCGGTCA+AGG | 0.449504 | 5.1:-73590692 | MS.gene062330:CDS |
| TCAACTCGTCGGAAAATTCA+TGG | 0.450814 | 5.1:-73591098 | MS.gene062330:CDS |
| CCCACCTCCTCCTGGTCAGA+TGG | 0.451634 | 5.1:-73590504 | MS.gene062330:CDS |
| GCTGCTGCAATGGCTGGTCC+TGG | 0.451669 | 5.1:-73590872 | MS.gene062330:CDS |
| CGCCACATGAATCTTGTTCT+CGG | 0.452233 | 5.1:-73591067 | MS.gene062330:CDS |
| GGAGGAGGCATGCCAGGCCG+AGG | 0.453758 | 5.1:+73590383 | None:intergenic |
| CCTCCTGCTCCTCCTCGTCC+TGG | 0.453758 | 5.1:-73590473 | MS.gene062330:CDS |
| AGACCGCCGCACACTCGGTT+TGG | 0.455844 | 5.1:-73590978 | MS.gene062330:CDS |
| TTTGGTGGAGGAGGCATGCC+AGG | 0.462102 | 5.1:+73590377 | None:intergenic |
| GTTGTTTCGATGACAGTTGA+AGG | 0.465323 | 5.1:-73590935 | MS.gene062330:CDS |
| GGCCGAGGTGGACCATAAAC+CGG | 0.466333 | 5.1:+73590398 | None:intergenic |
| CCACCGCCTCCTATGCCGCC+GGG | 0.471646 | 5.1:-73590605 | MS.gene062330:CDS |
| ACCATCTGACCAGGAGGAGG+TGG | 0.471852 | 5.1:+73590503 | None:intergenic |
| CGTCCGCCTGTATCGTATCC+TGG | 0.473335 | 5.1:-73590725 | MS.gene062330:CDS |
| CCTGGAATTGGTCGTGCTGC+GGG | 0.477710 | 5.1:-73590854 | MS.gene062330:CDS |
| ATGCAGCCTCCGCCTCGTCC+TGG | 0.478953 | 5.1:-73590449 | MS.gene062330:CDS |
| GGTGTAGGTGGACCTGCTCC+TGG | 0.479069 | 5.1:-73590770 | MS.gene062330:CDS |
| ATCGTATCCTGGTGGTGCTC+CGG | 0.480341 | 5.1:-73590714 | MS.gene062330:CDS |
| GCTGGTCCTGTTCGTGGTGT+AGG | 0.480465 | 5.1:-73590785 | MS.gene062330:CDS |
| GTTTATGGTCCACCTCGGCC+TGG | 0.481603 | 5.1:-73590395 | MS.gene062330:CDS |
| GGCATACCAGGACGAGGCGG+AGG | 0.485016 | 5.1:+73590443 | None:intergenic |
| GGCATACCAAATTGCGGTGG+AGG | 0.490506 | 5.1:+73590557 | None:intergenic |
| TAAACCGGAACACCACTTCC+AGG | 0.492870 | 5.1:+73590413 | None:intergenic |
| GAACGAGACTCTTCAGGAGG+TGG | 0.493352 | 5.1:+73590908 | None:intergenic |
| TCCACCGCCTCCTATGCCGC+CGG | 0.493463 | 5.1:-73590606 | MS.gene062330:CDS |
| ATTCCAGGACGAGGAGGAGC+AGG | 0.494294 | 5.1:+73590470 | None:intergenic |
| CTCTGCCCATACTGAGGAGG+TGG | 0.494871 | 5.1:+73590536 | None:intergenic |
| GTAAATGCTGCTGCAATGGC+TGG | 0.497801 | 5.1:-73590878 | MS.gene062330:CDS |
| CCTATGGGCCCACCTCCTCC+TGG | 0.499583 | 5.1:-73590512 | MS.gene062330:CDS |
| GGTCCACCTACACCACGAAC+AGG | 0.501617 | 5.1:+73590779 | None:intergenic |
| CCAGGAGGAGGTGGGCCCAT+AGG | 0.503981 | 5.1:+73590512 | None:intergenic |
| GGGCAATTTGGGCAGAGACC+AGG | 0.504430 | 5.1:-73590584 | MS.gene062330:CDS |
| GGTCTTGCTGGTCCTGTTCG+TGG | 0.506497 | 5.1:-73590791 | MS.gene062330:CDS |
| CCAGGAGGAGGAGGCATACC+AGG | 0.507678 | 5.1:+73590431 | None:intergenic |
| TTTGGAGCATTTGGTGGAGG+AGG | 0.507736 | 5.1:+73590368 | None:intergenic |
| ATGCCTCCTCCTCCTGGAAG+TGG | 0.515957 | 5.1:-73590425 | MS.gene062330:CDS |
| CGTGAAGACCGCCGCACACT+CGG | 0.516055 | 5.1:-73590983 | MS.gene062330:CDS |
| GTCTTCACGGTCGCCGTCGG+TGG | 0.516113 | 5.1:+73590997 | None:intergenic |
| TCGCAAACTTCCACCGGCGA+AGG | 0.516980 | 5.1:-73591029 | MS.gene062330:CDS |
| AATTGCCCCGGCGGCATAGG+AGG | 0.518983 | 5.1:+73590599 | None:intergenic |
| GTATGCCACCTCCTCAGTAT+GGG | 0.520179 | 5.1:-73590541 | MS.gene062330:CDS |
| CAGTATGGGCAGAGACCTAT+GGG | 0.520524 | 5.1:-73590527 | MS.gene062330:CDS |
| TGCCCCGGCGGCATAGGAGG+CGG | 0.521351 | 5.1:+73590602 | None:intergenic |
| ATCTGCGGTGGACCTTGTCC+AGG | 0.522039 | 5.1:+73590638 | None:intergenic |
| CCTGGTCAAATGCCATATCC+TGG | 0.523384 | 5.1:-73590665 | MS.gene062330:CDS |
| TGACCAGGTGGACCTTGACC+GGG | 0.528351 | 5.1:+73590680 | None:intergenic |
| GGACCTTGTCCAGGATGTCC+AGG | 0.530197 | 5.1:+73590647 | None:intergenic |
| CGCATAACCGGAGCACCACC+AGG | 0.532565 | 5.1:+73590707 | None:intergenic |
| AAGATTCATGTGGCGGTCGA+AGG | 0.533354 | 5.1:+73591075 | None:intergenic |
| TGATTTGGAGCATTTGGTGG+AGG | 0.533563 | 5.1:+73590365 | None:intergenic |
| CCAGGATATGGCATTTGACC+AGG | 0.535882 | 5.1:+73590665 | None:intergenic |
| TGTTGATTTGGAGCATTTGG+TGG | 0.537037 | 5.1:+73590362 | None:intergenic |
| GGCTGCATCATACCAGGAGC+AGG | 0.537879 | 5.1:+73590758 | None:intergenic |
| AAGGTCCACCGCAGATGGTG+AGG | 0.541082 | 5.1:-73590631 | MS.gene062330:CDS |
| TGAGCTTGAATAACCGGGGC+CGG | 0.541907 | 5.1:+73590818 | None:intergenic |
| TCCTGGAATTGGTCGTGCTG+CGG | 0.542366 | 5.1:-73590855 | MS.gene062330:CDS |
| CTCGGTTTGGTTCTACTTCG+GGG | 0.543292 | 5.1:-73590965 | MS.gene062330:CDS |
| CCGGTTATTCAAGCTCAACC+TGG | 0.546846 | 5.1:-73590812 | MS.gene062330:CDS |
| AGCCGTAAATGCTGCTGCAA+TGG | 0.548215 | 5.1:-73590882 | MS.gene062330:CDS |
| GCACCACCAGGATACGATAC+AGG | 0.548547 | 5.1:+73590719 | None:intergenic |
| GCGGTCTTCACGGTCGCCGT+CGG | 0.552395 | 5.1:+73590994 | None:intergenic |
| GCTCCGGTTATGCGTCCGCC+CGG | 0.552551 | 5.1:-73590698 | MS.gene062330:CDS |
| TGGACAAGGTCCACCGCAGA+TGG | 0.555676 | 5.1:-73590636 | MS.gene062330:CDS |
| CCCGGCGGCATAGGAGGCGG+TGG | 0.555943 | 5.1:+73590605 | None:intergenic |
| CAGGTTGAGCTTGAATAACC+GGG | 0.556075 | 5.1:+73590813 | None:intergenic |
| ATCTGCGGCTGCATCATACC+AGG | 0.556260 | 5.1:+73590752 | None:intergenic |
| CGAGACTCTTCAGGAGGTGG+AGG | 0.557203 | 5.1:+73590911 | None:intergenic |
| TGCGGGTAGAGGTATTCCTC+CGG | 0.560855 | 5.1:-73590837 | MS.gene062330:CDS |
| GGAGGAGGCATACCAGGACG+AGG | 0.563026 | 5.1:+73590437 | None:intergenic |
| TAGAGGTATTCCTCCGGCCC+CGG | 0.565094 | 5.1:-73590831 | MS.gene062330:CDS |
| CGCAAACTTCCACCGGCGAA+GGG | 0.566820 | 5.1:-73591028 | MS.gene062330:CDS |
| GGAGGCATGCCAGGCCGAGG+TGG | 0.567307 | 5.1:+73590386 | None:intergenic |
| AGAGTTTCGCAAACTTCCAC+CGG | 0.569517 | 5.1:-73591035 | MS.gene062330:CDS |
| CCGCCCGGTCAAGGTCCACC+TGG | 0.569962 | 5.1:-73590683 | MS.gene062330:CDS |
| TTCCGGTTTATGGTCCACCT+CGG | 0.570223 | 5.1:-73590400 | MS.gene062330:CDS |
| AATTGCGGTGGAGGACCACC+TGG | 0.573263 | 5.1:+73590566 | None:intergenic |
| ACACCACTTCCAGGAGGAGG+AGG | 0.578227 | 5.1:+73590422 | None:intergenic |
| GGACCCCTCACCATCTGCGG+TGG | 0.578400 | 5.1:+73590626 | None:intergenic |
| GGAGGCATACCAGGACGAGG+CGG | 0.584977 | 5.1:+73590440 | None:intergenic |
| GGAGGCTGCATTCCAGGACG+AGG | 0.587206 | 5.1:+73590461 | None:intergenic |
| CTCTGCCCAAATTGCCCCGG+CGG | 0.590935 | 5.1:+73590590 | None:intergenic |
| GGTCCTGTTCGTGGTGTAGG+TGG | 0.591284 | 5.1:-73590782 | MS.gene062330:CDS |
| CTAACCATCTGACCAGGAGG+AGG | 0.594137 | 5.1:+73590500 | None:intergenic |
| CCAGGACGAGGAGGAGCAGG+AGG | 0.595102 | 5.1:+73590473 | None:intergenic |
| CGAACAGGACCAGCAAGACC+AGG | 0.597167 | 5.1:+73590794 | None:intergenic |
| AGGTCCACCGCAGATGGTGA+GGG | 0.597838 | 5.1:-73590630 | MS.gene062330:CDS |
| GGTCTCTGCCCAAATTGCCC+CGG | 0.603588 | 5.1:+73590587 | None:intergenic |
| CACCGCCTCCTATGCCGCCG+GGG | 0.606476 | 5.1:-73590604 | MS.gene062330:CDS |
| GGCTGCATTCCAGGACGAGG+AGG | 0.612159 | 5.1:+73590464 | None:intergenic |
| GGTGGACCCCTCACCATCTG+CGG | 0.614870 | 5.1:+73590623 | None:intergenic |
| CAATTTGGGCAGAGACCAGG+TGG | 0.620080 | 5.1:-73590581 | MS.gene062330:CDS |
| GGTCCTCTAACCATCTGACC+AGG | 0.622862 | 5.1:+73590494 | None:intergenic |
| GGAACACCACTTCCAGGAGG+AGG | 0.623836 | 5.1:+73590419 | None:intergenic |
| ACAGGCGGACGCGAAATCTG+CGG | 0.625097 | 5.1:+73590737 | None:intergenic |
| GGTCCACCGCAGATGGTGAG+GGG | 0.627488 | 5.1:-73590629 | MS.gene062330:CDS |
| CAAGACGGTCGTCAACTCGT+CGG | 0.630881 | 5.1:-73591109 | MS.gene062330:CDS |
| CCATCTGACCAGGAGGAGGT+GGG | 0.631940 | 5.1:+73590504 | None:intergenic |
| TTCGAACGAGACTCTTCAGG+AGG | 0.632943 | 5.1:+73590905 | None:intergenic |
| GTAGAACCAAACCGAGTGTG+CGG | 0.635167 | 5.1:+73590972 | None:intergenic |
| TATCCTGGACATCCTGGACA+AGG | 0.636817 | 5.1:-73590650 | MS.gene062330:CDS |
| GCTTGAATAACCGGGGCCGG+AGG | 0.649592 | 5.1:+73590821 | None:intergenic |
| GGATATGGCATTTGACCAGG+TGG | 0.660601 | 5.1:+73590668 | None:intergenic |
| GGTCTCTGCCCATACTGAGG+AGG | 0.662332 | 5.1:+73590533 | None:intergenic |
| ATAGGTCTCTGCCCATACTG+AGG | 0.666393 | 5.1:+73590530 | None:intergenic |
| CGAGAACAAGATTCATGTGG+CGG | 0.667753 | 5.1:+73591068 | None:intergenic |
| GGTGGCATACCAAATTGCGG+TGG | 0.671528 | 5.1:+73590554 | None:intergenic |
| CGCCGAGAACAAGATTCATG+TGG | 0.676790 | 5.1:+73591065 | None:intergenic |
| AAGGGTAAGAAAACCACCGA+CGG | 0.686452 | 5.1:-73591010 | MS.gene062330:CDS |
| CCTCTAACCATCTGACCAGG+AGG | 0.688741 | 5.1:+73590497 | None:intergenic |
| GAACCAAACCGAGTGTGCGG+CGG | 0.694201 | 5.1:+73590975 | None:intergenic |
| GGAGGTGGCATACCAAATTG+CGG | 0.698345 | 5.1:+73590551 | None:intergenic |
| ATGCGAGTGACAATCCAAGA+CGG | 0.720905 | 5.1:-73591124 | MS.gene062330:CDS |
| ACCGGAACACCACTTCCAGG+AGG | 0.726433 | 5.1:+73590416 | None:intergenic |
| AGGTTGAGCTTGAATAACCG+GGG | 0.731227 | 5.1:+73590814 | None:intergenic |
| CCGCCTGTATCGTATCCTGG+TGG | 0.731676 | 5.1:-73590722 | MS.gene062330:CDS |
| CCAGGTGGACCTTGACCGGG+CGG | 0.734141 | 5.1:+73590683 | None:intergenic |
| CCACCAGGATACGATACAGG+CGG | 0.734698 | 5.1:+73590722 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTGATGTATTGAAGCATTT+TGG | + | chr5.1:73590371-73590390 | None:intergenic | 30.0% |
| TCAACTCGTCGGAAAATTCA+TGG | - | chr5.1:73590423-73590442 | MS.gene062330:CDS | 40.0% | |
| ! | GTTGTTTCGATGACAGTTGA+AGG | - | chr5.1:73590586-73590605 | MS.gene062330:CDS | 40.0% |
| !! | TGCTGTTGATTTGGAGCATT+TGG | + | chr5.1:73591165-73591184 | None:intergenic | 40.0% |
| !! | TGTTGATTTGGAGCATTTGG+TGG | + | chr5.1:73591162-73591181 | None:intergenic | 40.0% |
| AAGGGTAAGAAAACCACCGA+CGG | - | chr5.1:73590511-73590530 | MS.gene062330:CDS | 45.0% | |
| AGAGTTTCGCAAACTTCCAC+CGG | - | chr5.1:73590486-73590505 | MS.gene062330:CDS | 45.0% | |
| AGCCATTGCAGCAGCATTTA+CGG | + | chr5.1:73590644-73590663 | None:intergenic | 45.0% | |
| AGGTTGAGCTTGAATAACCG+GGG | + | chr5.1:73590710-73590729 | None:intergenic | 45.0% | |
| ATGCGAGTGACAATCCAAGA+CGG | - | chr5.1:73590397-73590416 | MS.gene062330:CDS | 45.0% | |
| CGAGAACAAGATTCATGTGG+CGG | + | chr5.1:73590456-73590475 | None:intergenic | 45.0% | |
| CGCCACATGAATCTTGTTCT+CGG | - | chr5.1:73590454-73590473 | MS.gene062330:CDS | 45.0% | |
| ! | CACTGTTGCTGCTGTTGATT+TGG | + | chr5.1:73591174-73591193 | None:intergenic | 45.0% |
| ! | CAGGTTGAGCTTGAATAACC+GGG | + | chr5.1:73590711-73590730 | None:intergenic | 45.0% |
| ! | CCAGGTTGAGCTTGAATAAC+CGG | + | chr5.1:73590712-73590731 | None:intergenic | 45.0% |
| ! | TGATTTGGAGCATTTGGTGG+AGG | + | chr5.1:73591159-73591178 | None:intergenic | 45.0% |
| !! | ACTCGGTTTGGTTCTACTTC+GGG | - | chr5.1:73590555-73590574 | MS.gene062330:CDS | 45.0% |
| !! | CACTCGGTTTGGTTCTACTT+CGG | - | chr5.1:73590554-73590573 | MS.gene062330:CDS | 45.0% |
| AAGATTCATGTGGCGGTCGA+AGG | + | chr5.1:73590449-73590468 | None:intergenic | 50.0% | |
| AGCCGTAAATGCTGCTGCAA+TGG | - | chr5.1:73590639-73590658 | MS.gene062330:CDS | 50.0% | |
| ATAGGTCTCTGCCCATACTG+AGG | + | chr5.1:73590994-73591013 | None:intergenic | 50.0% | |
| ATGCCATATCCTGGACATCC+TGG | - | chr5.1:73590865-73590884 | MS.gene062330:CDS | 50.0% | |
| CAGTATGGGCAGAGACCTAT+GGG | - | chr5.1:73590994-73591013 | MS.gene062330:CDS | 50.0% | |
| CCAGGATATGGCATTTGACC+AGG | + | chr5.1:73590859-73590878 | None:intergenic | 50.0% | |
| CCGGTTATTCAAGCTCAACC+TGG | - | chr5.1:73590709-73590728 | MS.gene062330:CDS | 50.0% | |
| CCTGGTCAAATGCCATATCC+TGG | - | chr5.1:73590856-73590875 | MS.gene062330:CDS | 50.0% | |
| CGCCGAGAACAAGATTCATG+TGG | + | chr5.1:73590459-73590478 | None:intergenic | 50.0% | |
| GCTTTCGAACGAGACTCTTC+AGG | + | chr5.1:73590622-73590641 | None:intergenic | 50.0% | |
| GGAAGTGGTGTTCCGGTTTA+TGG | - | chr5.1:73591111-73591130 | MS.gene062330:CDS | 50.0% | |
| GGAGGTGGCATACCAAATTG+CGG | + | chr5.1:73590973-73590992 | None:intergenic | 50.0% | |
| GGATATGGCATTTGACCAGG+TGG | + | chr5.1:73590856-73590875 | None:intergenic | 50.0% | |
| GTAAATGCTGCTGCAATGGC+TGG | - | chr5.1:73590643-73590662 | MS.gene062330:CDS | 50.0% | |
| GTAGAACCAAACCGAGTGTG+CGG | + | chr5.1:73590552-73590571 | None:intergenic | 50.0% | |
| GTATGCCACCTCCTCAGTAT+GGG | - | chr5.1:73590980-73590999 | MS.gene062330:CDS | 50.0% | |
| TAAACCGGAACACCACTTCC+AGG | + | chr5.1:73591111-73591130 | None:intergenic | 50.0% | |
| TATCCTGGACATCCTGGACA+AGG | - | chr5.1:73590871-73590890 | MS.gene062330:CDS | 50.0% | |
| TCAGTATGGGCAGAGACCTA+TGG | - | chr5.1:73590993-73591012 | MS.gene062330:CDS | 50.0% | |
| TGTCCAGGATGTCCAGGATA+TGG | + | chr5.1:73590871-73590890 | None:intergenic | 50.0% | |
| TTCCGGTTTATGGTCCACCT+CGG | - | chr5.1:73591121-73591140 | MS.gene062330:CDS | 50.0% | |
| TTCGAACGAGACTCTTCAGG+AGG | + | chr5.1:73590619-73590638 | None:intergenic | 50.0% | |
| ! | GTGGTTTTCTTACCCTTCGC+CGG | + | chr5.1:73590508-73590527 | None:intergenic | 50.0% |
| ! | TTTGGAGCATTTGGTGGAGG+AGG | + | chr5.1:73591156-73591175 | None:intergenic | 50.0% |
| !! | CTCGGTTTGGTTCTACTTCG+GGG | - | chr5.1:73590556-73590575 | MS.gene062330:CDS | 50.0% |
| ATCTGCGGCTGCATCATACC+AGG | + | chr5.1:73590772-73590791 | None:intergenic | 55.0% | |
| CAAGACGGTCGTCAACTCGT+CGG | - | chr5.1:73590412-73590431 | MS.gene062330:CDS | 55.0% | |
| CAATTTGGGCAGAGACCAGG+TGG | - | chr5.1:73590940-73590959 | MS.gene062330:CDS | 55.0% | |
| CCACCAGGATACGATACAGG+CGG | + | chr5.1:73590802-73590821 | None:intergenic | 55.0% | |
| CCTCCTGGTCAGATGGTTAG+AGG | - | chr5.1:73591024-73591043 | MS.gene062330:CDS | 55.0% | |
| CCTCTAACCATCTGACCAGG+AGG | + | chr5.1:73591027-73591046 | None:intergenic | 55.0% | |
| CTAACCATCTGACCAGGAGG+AGG | + | chr5.1:73591024-73591043 | None:intergenic | 55.0% | |
| GAACGAGACTCTTCAGGAGG+TGG | + | chr5.1:73590616-73590635 | None:intergenic | 55.0% | |
| GCACCACCAGGATACGATAC+AGG | + | chr5.1:73590805-73590824 | None:intergenic | 55.0% | |
| GGCATACCAAATTGCGGTGG+AGG | + | chr5.1:73590967-73590986 | None:intergenic | 55.0% | |
| GGTATGCCACCTCCTCAGTA+TGG | - | chr5.1:73590979-73590998 | MS.gene062330:CDS | 55.0% | |
| GGTCCTCTAACCATCTGACC+AGG | + | chr5.1:73591030-73591049 | None:intergenic | 55.0% | |
| GGTGGCATACCAAATTGCGG+TGG | + | chr5.1:73590970-73590989 | None:intergenic | 55.0% | |
| TCCTCCTGGAAGTGGTGTTC+CGG | - | chr5.1:73591104-73591123 | MS.gene062330:CDS | 55.0% | |
| TCCTGGAATTGGTCGTGCTG+CGG | - | chr5.1:73590666-73590685 | MS.gene062330:CDS | 55.0% | |
| TGAGCTTGAATAACCGGGGC+CGG | + | chr5.1:73590706-73590725 | None:intergenic | 55.0% | |
| TTGACCAGGTGGACCTTGAC+CGG | + | chr5.1:73590845-73590864 | None:intergenic | 55.0% | |
| ! | ATCGTATCCTGGTGGTGCTC+CGG | - | chr5.1:73590807-73590826 | MS.gene062330:CDS | 55.0% |
| ! | GCAATGGCTGGTCCTGGAAT+TGG | - | chr5.1:73590655-73590674 | MS.gene062330:CDS | 55.0% |
| ! | GTTTTCTTACCCTTCGCCGG+TGG | + | chr5.1:73590505-73590524 | None:intergenic | 55.0% |
| !! | CAAGCTCAACCTGGTCTTGC+TGG | - | chr5.1:73590718-73590737 | MS.gene062330:CDS | 55.0% |
| !! | TGCGGGTAGAGGTATTCCTC+CGG | - | chr5.1:73590684-73590703 | MS.gene062330:CDS | 55.0% |
| AAGGTCCACCGCAGATGGTG+AGG | - | chr5.1:73590890-73590909 | MS.gene062330:CDS | 60.0% | |
| AATTGCGGTGGAGGACCACC+TGG | + | chr5.1:73590958-73590977 | None:intergenic | 60.0% | |
| ACACCACTTCCAGGAGGAGG+AGG | + | chr5.1:73591102-73591121 | None:intergenic | 60.0% | |
| ACAGGCGGACGCGAAATCTG+CGG | + | chr5.1:73590787-73590806 | None:intergenic | 60.0% | |
| ACCATCTGACCAGGAGGAGG+TGG | + | chr5.1:73591021-73591040 | None:intergenic | 60.0% | |
| ACCGGAACACCACTTCCAGG+AGG | + | chr5.1:73591108-73591127 | None:intergenic | 60.0% | |
| AGGTCCACCGCAGATGGTGA+GGG | - | chr5.1:73590891-73590910 | MS.gene062330:CDS | 60.0% | |
| ATCTGCGGTGGACCTTGTCC+AGG | + | chr5.1:73590886-73590905 | None:intergenic | 60.0% | |
| ATGCCTCCTCCTCCTGGAAG+TGG | - | chr5.1:73591096-73591115 | MS.gene062330:CDS | 60.0% | |
| ATTCCAGGACGAGGAGGAGC+AGG | + | chr5.1:73591054-73591073 | None:intergenic | 60.0% | |
| ATTGGTCGTGCTGCGGGTAG+AGG | - | chr5.1:73590673-73590692 | MS.gene062330:CDS | 60.0% | |
| CCATCTGACCAGGAGGAGGT+GGG | + | chr5.1:73591020-73591039 | None:intergenic | 60.0% | |
| CCGCCTGTATCGTATCCTGG+TGG | - | chr5.1:73590799-73590818 | MS.gene062330:CDS | 60.0% | |
| CCTGGAATTGGTCGTGCTGC+GGG | - | chr5.1:73590667-73590686 | MS.gene062330:CDS | 60.0% | |
| CGAACAGGACCAGCAAGACC+AGG | + | chr5.1:73590730-73590749 | None:intergenic | 60.0% | |
| CGAGACTCTTCAGGAGGTGG+AGG | + | chr5.1:73590613-73590632 | None:intergenic | 60.0% | |
| CGCAAACTTCCACCGGCGAA+GGG | - | chr5.1:73590493-73590512 | MS.gene062330:CDS | 60.0% | |
| CGTCCGCCTGTATCGTATCC+TGG | - | chr5.1:73590796-73590815 | MS.gene062330:CDS | 60.0% | |
| CTATGCCGCCGGGGCAATTT+GGG | - | chr5.1:73590926-73590945 | MS.gene062330:CDS | 60.0% | |
| CTCTGCCCATACTGAGGAGG+TGG | + | chr5.1:73590988-73591007 | None:intergenic | 60.0% | |
| GAACCAAACCGAGTGTGCGG+CGG | + | chr5.1:73590549-73590568 | None:intergenic | 60.0% | |
| GCTGGTCCTGTTCGTGGTGT+AGG | - | chr5.1:73590736-73590755 | MS.gene062330:CDS | 60.0% | |
| GGAACACCACTTCCAGGAGG+AGG | + | chr5.1:73591105-73591124 | None:intergenic | 60.0% | |
| GGACCTTGTCCAGGATGTCC+AGG | + | chr5.1:73590877-73590896 | None:intergenic | 60.0% | |
| GGCCGAGGTGGACCATAAAC+CGG | + | chr5.1:73591126-73591145 | None:intergenic | 60.0% | |
| GGCTGCATCATACCAGGAGC+AGG | + | chr5.1:73590766-73590785 | None:intergenic | 60.0% | |
| GGGCAATTTGGGCAGAGACC+AGG | - | chr5.1:73590937-73590956 | MS.gene062330:CDS | 60.0% | |
| GGTCCACCTACACCACGAAC+AGG | + | chr5.1:73590745-73590764 | None:intergenic | 60.0% | |
| GGTCCTGTTCGTGGTGTAGG+TGG | - | chr5.1:73590739-73590758 | MS.gene062330:CDS | 60.0% | |
| GGTCTCTGCCCAAATTGCCC+CGG | + | chr5.1:73590937-73590956 | None:intergenic | 60.0% | |
| GGTCTCTGCCCATACTGAGG+AGG | + | chr5.1:73590991-73591010 | None:intergenic | 60.0% | |
| GGTCTTGCTGGTCCTGTTCG+TGG | - | chr5.1:73590730-73590749 | MS.gene062330:CDS | 60.0% | |
| GGTGGTCCTCCACCGCAATT+TGG | - | chr5.1:73590958-73590977 | MS.gene062330:CDS | 60.0% | |
| GTTTATGGTCCACCTCGGCC+TGG | - | chr5.1:73591126-73591145 | MS.gene062330:CDS | 60.0% | |
| TCGCAAACTTCCACCGGCGA+AGG | - | chr5.1:73590492-73590511 | MS.gene062330:CDS | 60.0% | |
| TGACCAGGTGGACCTTGACC+GGG | + | chr5.1:73590844-73590863 | None:intergenic | 60.0% | |
| TGGACAAGGTCCACCGCAGA+TGG | - | chr5.1:73590885-73590904 | MS.gene062330:CDS | 60.0% | |
| ! | CGACGAGTTGACGACCGTCT+TGG | + | chr5.1:73590414-73590433 | None:intergenic | 60.0% |
| ! | TTTGGTGGAGGAGGCATGCC+AGG | + | chr5.1:73591147-73591166 | None:intergenic | 60.0% |
| !! | TAGAGGTATTCCTCCGGCCC+CGG | - | chr5.1:73590690-73590709 | MS.gene062330:CDS | 60.0% |
| AATTGCCCCGGCGGCATAGG+AGG | + | chr5.1:73590925-73590944 | None:intergenic | 65.0% | |
| AGACCGCCGCACACTCGGTT+TGG | - | chr5.1:73590543-73590562 | MS.gene062330:CDS | 65.0% | |
| CCAAATTGCCCCGGCGGCAT+AGG | + | chr5.1:73590928-73590947 | None:intergenic | 65.0% | |
| CCCACCTCCTCCTGGTCAGA+TGG | - | chr5.1:73591017-73591036 | MS.gene062330:CDS | 65.0% | |
| CCCGCAGCACGACCAATTCC+AGG | + | chr5.1:73590670-73590689 | None:intergenic | 65.0% | |
| CCTATGCCGCCGGGGCAATT+TGG | - | chr5.1:73590925-73590944 | MS.gene062330:CDS | 65.0% | |
| CCTGGTATGCCTCCTCCTCC+TGG | - | chr5.1:73591090-73591109 | MS.gene062330:CDS | 65.0% | |
| CGAGTGTGCGGCGGTCTTCA+CGG | + | chr5.1:73590540-73590559 | None:intergenic | 65.0% | |
| CGTGAAGACCGCCGCACACT+CGG | - | chr5.1:73590538-73590557 | MS.gene062330:CDS | 65.0% | |
| CTCTGCCCAAATTGCCCCGG+CGG | + | chr5.1:73590934-73590953 | None:intergenic | 65.0% | |
| GCTTGAATAACCGGGGCCGG+AGG | + | chr5.1:73590703-73590722 | None:intergenic | 65.0% | |
| GGAGGCTGCATTCCAGGACG+AGG | + | chr5.1:73591063-73591082 | None:intergenic | 65.0% | |
| GGCTGCATTCCAGGACGAGG+AGG | + | chr5.1:73591060-73591079 | None:intergenic | 65.0% | |
| GGTCCACCGCAGATGGTGAG+GGG | - | chr5.1:73590892-73590911 | MS.gene062330:CDS | 65.0% | |
| GGTGGACCCCTCACCATCTG+CGG | + | chr5.1:73590901-73590920 | None:intergenic | 65.0% | |
| GGTGTAGGTGGACCTGCTCC+TGG | - | chr5.1:73590751-73590770 | MS.gene062330:CDS | 65.0% | |
| GTTATGCGTCCGCCCGGTCA+AGG | - | chr5.1:73590829-73590848 | MS.gene062330:CDS | 65.0% | |
| TGACCGGGCGGACGCATAAC+CGG | + | chr5.1:73590829-73590848 | None:intergenic | 65.0% | |
| ! | CCAGGAGGAGGAGGCATACC+AGG | + | chr5.1:73591093-73591112 | None:intergenic | 65.0% |
| ! | CGCATAACCGGAGCACCACC+AGG | + | chr5.1:73590817-73590836 | None:intergenic | 65.0% |
| ! | GCTGCTGCAATGGCTGGTCC+TGG | - | chr5.1:73590649-73590668 | MS.gene062330:CDS | 65.0% |
| ! | GGAGGAGGCATACCAGGACG+AGG | + | chr5.1:73591087-73591106 | None:intergenic | 65.0% |
| ! | GGAGGCATACCAGGACGAGG+CGG | + | chr5.1:73591084-73591103 | None:intergenic | 65.0% |
| ATGCAGCCTCCGCCTCGTCC+TGG | - | chr5.1:73591072-73591091 | MS.gene062330:CDS | 70.0% | |
| CCAGGACGAGGAGGAGCAGG+AGG | + | chr5.1:73591051-73591070 | None:intergenic | 70.0% | |
| CCAGGAGGAGGTGGGCCCAT+AGG | + | chr5.1:73591012-73591031 | None:intergenic | 70.0% | |
| CCAGGTGGACCTTGACCGGG+CGG | + | chr5.1:73590841-73590860 | None:intergenic | 70.0% | |
| CCTATGGGCCCACCTCCTCC+TGG | - | chr5.1:73591009-73591028 | MS.gene062330:CDS | 70.0% | |
| CCTCCTGCTCCTCCTCGTCC+TGG | - | chr5.1:73591048-73591067 | MS.gene062330:CDS | 70.0% | |
| CGAGGCGGAGGCTGCATTCC+AGG | + | chr5.1:73591069-73591088 | None:intergenic | 70.0% | |
| GCGGTCTTCACGGTCGCCGT+CGG | + | chr5.1:73590530-73590549 | None:intergenic | 70.0% | |
| GCTCCGGTTATGCGTCCGCC+CGG | - | chr5.1:73590823-73590842 | MS.gene062330:CDS | 70.0% | |
| GGACCCCTCACCATCTGCGG+TGG | + | chr5.1:73590898-73590917 | None:intergenic | 70.0% | |
| GGCATACCAGGACGAGGCGG+AGG | + | chr5.1:73591081-73591100 | None:intergenic | 70.0% | |
| GTCTTCACGGTCGCCGTCGG+TGG | + | chr5.1:73590527-73590546 | None:intergenic | 70.0% | |
| TCCACCGCCTCCTATGCCGC+CGG | - | chr5.1:73590915-73590934 | MS.gene062330:CDS | 70.0% | |
| CACCGCCTCCTATGCCGCCG+GGG | - | chr5.1:73590917-73590936 | MS.gene062330:CDS | 75.0% | |
| CCACCGCCTCCTATGCCGCC+GGG | - | chr5.1:73590916-73590935 | MS.gene062330:CDS | 75.0% | |
| CCGCCCGGTCAAGGTCCACC+TGG | - | chr5.1:73590838-73590857 | MS.gene062330:CDS | 75.0% | |
| TGCCCCGGCGGCATAGGAGG+CGG | + | chr5.1:73590922-73590941 | None:intergenic | 75.0% | |
| ! | GGAGGAGGCATGCCAGGCCG+AGG | + | chr5.1:73591141-73591160 | None:intergenic | 75.0% |
| ! | GGAGGCATGCCAGGCCGAGG+TGG | + | chr5.1:73591138-73591157 | None:intergenic | 75.0% |
| ! | CCCGGCGGCATAGGAGGCGG+TGG | + | chr5.1:73590919-73590938 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 73590349 | 73591194 | 73590349 | ID=MS.gene062330 |
| chr5.1 | mRNA | 73590349 | 73591194 | 73590349 | ID=MS.gene062330.t1;Parent=MS.gene062330 |
| chr5.1 | exon | 73590349 | 73591194 | 73590349 | ID=MS.gene062330.t1.exon1;Parent=MS.gene062330.t1 |
| chr5.1 | CDS | 73590349 | 73591194 | 73590349 | ID=cds.MS.gene062330.t1;Parent=MS.gene062330.t1 |
| Gene Sequence |
| Protein sequence |
