Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062651.t1 | XP_003619743.2 | 90.9 | 208 | 18 | 1 | 1 | 208 | 1 | 207 | 5.60E-106 | 393.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062651.t1 | O82711 | 49.8 | 217 | 101 | 7 | 1 | 213 | 1 | 213 | 3.9e-47 | 189.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062651.t1 | G7KP86 | 90.9 | 208 | 18 | 1 | 1 | 208 | 1 | 207 | 4.0e-106 | 393.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene062651 | 0.80442 | 2.18E-49 | -1.69E-46 |
| MS.gene049549 | MS.gene062651 | 0.828396 | 9.20E-55 | -1.69E-46 |
| MS.gene052211 | MS.gene062651 | 0.80341 | 3.53E-49 | -1.69E-46 |
| MS.gene052223 | MS.gene062651 | 0.80777 | 4.30E-50 | -1.69E-46 |
| MS.gene05240 | MS.gene062651 | 0.806819 | 6.84E-50 | -1.69E-46 |
| MS.gene052706 | MS.gene062651 | 0.805699 | 1.18E-49 | -1.69E-46 |
| MS.gene054146 | MS.gene062651 | 0.814651 | 1.38E-51 | -1.69E-46 |
| MS.gene054742 | MS.gene062651 | 0.8114 | 7.13E-51 | -1.69E-46 |
| MS.gene056330 | MS.gene062651 | 0.817112 | 3.90E-52 | -1.69E-46 |
| MS.gene056920 | MS.gene062651 | 0.81104 | 8.54E-51 | -1.69E-46 |
| MS.gene056923 | MS.gene062651 | 0.811027 | 8.60E-51 | -1.69E-46 |
| MS.gene059402 | MS.gene062651 | 0.8065 | 7.98E-50 | -1.69E-46 |
| MS.gene059955 | MS.gene062651 | 0.812806 | 3.52E-51 | -1.69E-46 |
| MS.gene060087 | MS.gene062651 | 0.829436 | 5.15E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062651.t1 | MTR_6g065460 | 90.865 | 208 | 18 | 1 | 1 | 208 | 1 | 207 | 6.23e-129 | 362 |
| MS.gene062651.t1 | MTR_6g065460 | 81.250 | 208 | 14 | 1 | 1 | 208 | 1 | 183 | 1.25e-108 | 309 |
| MS.gene062651.t1 | MTR_6g059650 | 67.380 | 187 | 51 | 6 | 19 | 202 | 20 | 199 | 1.80e-78 | 234 |
| MS.gene062651.t1 | MTR_3g463590 | 54.450 | 191 | 78 | 4 | 27 | 213 | 26 | 211 | 3.23e-62 | 193 |
| MS.gene062651.t1 | MTR_6g059530 | 51.163 | 215 | 91 | 6 | 1 | 213 | 1 | 203 | 1.32e-55 | 176 |
| MS.gene062651.t1 | MTR_6g059410 | 50.926 | 216 | 89 | 8 | 1 | 213 | 1 | 202 | 6.23e-53 | 169 |
| MS.gene062651.t1 | MTR_6g059760 | 49.321 | 221 | 96 | 10 | 1 | 213 | 1 | 213 | 8.68e-53 | 169 |
| MS.gene062651.t1 | MTR_6g059730 | 50.739 | 203 | 94 | 5 | 6 | 206 | 7 | 205 | 4.14e-50 | 162 |
| MS.gene062651.t1 | MTR_6g045097 | 43.243 | 222 | 112 | 8 | 1 | 213 | 1 | 217 | 2.88e-47 | 155 |
| MS.gene062651.t1 | MTR_6g044780 | 42.396 | 217 | 114 | 7 | 1 | 211 | 1 | 212 | 3.73e-47 | 155 |
| MS.gene062651.t1 | MTR_6g044810 | 42.396 | 217 | 114 | 7 | 1 | 211 | 1 | 212 | 4.63e-47 | 154 |
| MS.gene062651.t1 | MTR_6g017225 | 47.596 | 208 | 95 | 7 | 6 | 205 | 7 | 208 | 2.55e-45 | 154 |
| MS.gene062651.t1 | MTR_6g045403 | 41.860 | 215 | 116 | 5 | 1 | 211 | 1 | 210 | 2.79e-45 | 150 |
| MS.gene062651.t1 | MTR_6g059680 | 49.246 | 199 | 91 | 6 | 15 | 207 | 16 | 210 | 3.13e-44 | 147 |
| MS.gene062651.t1 | MTR_6g045433 | 38.914 | 221 | 112 | 6 | 7 | 213 | 8 | 219 | 1.63e-39 | 135 |
| MS.gene062651.t1 | MTR_6g009650 | 41.784 | 213 | 111 | 7 | 1 | 208 | 1 | 205 | 7.97e-38 | 130 |
| MS.gene062651.t1 | MTR_6g066190 | 41.784 | 213 | 109 | 8 | 1 | 207 | 1 | 204 | 1.06e-37 | 130 |
| MS.gene062651.t1 | MTR_6g059810 | 42.584 | 209 | 102 | 10 | 4 | 202 | 8 | 208 | 4.49e-37 | 129 |
| MS.gene062651.t1 | MTR_6g066210 | 41.038 | 212 | 114 | 6 | 1 | 207 | 1 | 206 | 1.19e-36 | 127 |
| MS.gene062651.t1 | MTR_6g009563 | 40.000 | 215 | 113 | 8 | 1 | 208 | 1 | 206 | 1.25e-33 | 120 |
| MS.gene062651.t1 | MTR_1g035770 | 39.394 | 198 | 109 | 7 | 6 | 195 | 7 | 201 | 4.29e-32 | 116 |
| MS.gene062651.t1 | MTR_6g065570 | 79.365 | 63 | 13 | 0 | 14 | 76 | 11 | 73 | 4.17e-30 | 107 |
| MS.gene062651.t1 | MTR_6g059755 | 50.000 | 124 | 52 | 6 | 96 | 213 | 11 | 130 | 1.97e-29 | 106 |
| MS.gene062651.t1 | MTR_1g057110 | 36.279 | 215 | 100 | 11 | 1 | 206 | 1 | 187 | 9.92e-27 | 101 |
| MS.gene062651.t1 | MTR_6g078290 | 34.722 | 216 | 120 | 9 | 1 | 202 | 1 | 209 | 7.34e-24 | 94.7 |
| MS.gene062651.t1 | MTR_6g078100 | 36.744 | 215 | 116 | 11 | 1 | 205 | 1 | 205 | 1.34e-23 | 94.0 |
| MS.gene062651.t1 | MTR_6g078070 | 34.884 | 215 | 118 | 11 | 1 | 205 | 1 | 203 | 6.47e-23 | 92.0 |
| MS.gene062651.t1 | MTR_6g078140 | 32.000 | 200 | 114 | 8 | 21 | 205 | 21 | 213 | 1.52e-17 | 78.2 |
| MS.gene062651.t1 | MTR_6g078120 | 32.000 | 200 | 114 | 8 | 21 | 205 | 21 | 213 | 3.99e-17 | 77.0 |
| MS.gene062651.t1 | MTR_3g106585 | 33.180 | 217 | 115 | 12 | 5 | 211 | 7 | 203 | 1.06e-15 | 73.2 |
| MS.gene062651.t1 | MTR_3g106620 | 30.108 | 186 | 111 | 8 | 28 | 206 | 27 | 200 | 3.82e-15 | 71.6 |
| MS.gene062651.t1 | MTR_2g073010 | 28.713 | 202 | 128 | 7 | 7 | 205 | 10 | 198 | 7.58e-14 | 67.8 |
| MS.gene062651.t1 | MTR_0302s0030 | 28.358 | 201 | 135 | 6 | 7 | 202 | 3 | 199 | 1.09e-12 | 64.7 |
| MS.gene062651.t1 | MTR_3g014870 | 28.293 | 205 | 127 | 8 | 5 | 202 | 9 | 200 | 2.09e-12 | 63.9 |
| MS.gene062651.t1 | MTR_6g078280 | 29.293 | 198 | 122 | 9 | 21 | 205 | 20 | 212 | 3.38e-12 | 63.5 |
| MS.gene062651.t1 | MTR_3g014820 | 27.805 | 205 | 128 | 8 | 5 | 202 | 9 | 200 | 1.28e-11 | 61.6 |
| MS.gene062651.t1 | MTR_0084s0030 | 27.861 | 201 | 136 | 6 | 7 | 202 | 3 | 199 | 1.36e-11 | 61.6 |
| MS.gene062651.t1 | MTR_2g072980 | 28.141 | 199 | 134 | 7 | 7 | 205 | 10 | 199 | 4.53e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062651.t1 | AT1G17860 | 33.824 | 204 | 122 | 8 | 4 | 205 | 3 | 195 | 2.17e-21 | 87.8 |
| MS.gene062651.t1 | AT1G73260 | 31.579 | 209 | 130 | 7 | 1 | 206 | 8 | 206 | 2.95e-20 | 85.5 |
| MS.gene062651.t1 | AT1G73325 | 30.583 | 206 | 130 | 7 | 4 | 205 | 7 | 203 | 1.38e-16 | 75.5 |
Find 62 sgRNAs with CRISPR-Local
Find 68 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATCATGCCATCAATCTT+TGG | 0.296622 | 6.4:+46272576 | MS.gene062651:CDS |
| GGGAGGCATGATGACTTTAC+TGG | 0.309229 | 6.4:+46272981 | MS.gene062651:CDS |
| CCTATCCTGCTAAACTTTAC+AGG | 0.312183 | 6.4:-46272693 | None:intergenic |
| CCTGGTGCTTGTTATGATAT+TGG | 0.331841 | 6.4:+46272960 | MS.gene062651:CDS |
| TGACTTTACTGGAAGGCTTC+TGG | 0.336007 | 6.4:+46272992 | MS.gene062651:CDS |
| CTGGTGCTTGTTATGATATT+GGG | 0.341631 | 6.4:+46272961 | MS.gene062651:CDS |
| GGTAAGGAATGTAGGTTTCA+TGG | 0.342364 | 6.4:-46272442 | None:intergenic |
| TACTGGAAGGCTTCTGGTCC+TGG | 0.347355 | 6.4:+46272998 | MS.gene062651:CDS |
| GAAGGTAAGCATATTATAGA+TGG | 0.366110 | 6.4:+46272867 | MS.gene062651:CDS |
| TTTGTTGATGCCTCTCAAAA+TGG | 0.385354 | 6.4:+46273047 | MS.gene062651:CDS |
| ATCAACAAATACAACTTCAT+AGG | 0.388203 | 6.4:-46273033 | None:intergenic |
| CCAGGTGGGGCAGTGATAGA+TGG | 0.414356 | 6.4:-46272942 | None:intergenic |
| CCAGCTGCTCCAAAGATTGA+TGG | 0.422912 | 6.4:-46272585 | None:intergenic |
| ATCTTTGGAGCAGCTGGTGG+TGG | 0.441234 | 6.4:+46272591 | MS.gene062651:CDS |
| GAACAAGTTATTGACACAAA+TGG | 0.443270 | 6.4:+46272525 | MS.gene062651:CDS |
| CCATCTATCACTGCCCCACC+TGG | 0.453523 | 6.4:+46272942 | MS.gene062651:CDS |
| CCATCAATCTTTGGAGCAGC+TGG | 0.460514 | 6.4:+46272585 | MS.gene062651:CDS |
| ACTGGACCATGGGTGGGTAT+TGG | 0.466256 | 6.4:+46272828 | MS.gene062651:CDS |
| GAGCAGCTGGTGGTGGATTG+AGG | 0.467057 | 6.4:+46272598 | MS.gene062651:CDS |
| CTTGGAGGATTCAGCACACT+CGG | 0.472541 | 6.4:-46272775 | None:intergenic |
| GTCTGCCTGTAAAGTTTAGC+AGG | 0.475302 | 6.4:+46272688 | MS.gene062651:CDS |
| AAAGAAAGGGTAAGGAATGT+AGG | 0.478598 | 6.4:-46272450 | None:intergenic |
| GGACCATGGGTGGGTATTGG+TGG | 0.483131 | 6.4:+46272831 | MS.gene062651:CDS |
| TGGACAGAACACAAACTTGT+AGG | 0.486171 | 6.4:-46272922 | None:intergenic |
| GATTATTCCGAGGTTGTCAA+TGG | 0.494338 | 6.4:+46272666 | MS.gene062651:CDS |
| CATAGGGATCATTATTAGCC+AGG | 0.494704 | 6.4:-46273016 | None:intergenic |
| CCTGTAAAGTTTAGCAGGAT+AGG | 0.495257 | 6.4:+46272693 | MS.gene062651:CDS |
| TAACAAATTAACTGGACCAT+GGG | 0.499496 | 6.4:+46272818 | MS.gene062651:CDS |
| ATGCAAAGAGGAGCAAAGAA+AGG | 0.504725 | 6.4:-46272464 | None:intergenic |
| CAAATTAACTGGACCATGGG+TGG | 0.513850 | 6.4:+46272821 | MS.gene062651:CDS |
| TAATCTTGAAGTACAGTAAG+TGG | 0.514474 | 6.4:-46272648 | None:intergenic |
| AAGTTTAGCAGGATAGGTGC+AGG | 0.518079 | 6.4:+46272699 | MS.gene062651:CDS |
| TGCAAAAGCTAATGAAAAGC+AGG | 0.523206 | 6.4:-46272493 | None:intergenic |
| CTTGTAAATGCGATATCAAG+TGG | 0.537798 | 6.4:-46272747 | None:intergenic |
| ATCATCAACCAACACCCACT+TGG | 0.538112 | 6.4:-46272793 | None:intergenic |
| AGAGGAGCAAAGAAAGGGTA+AGG | 0.541291 | 6.4:-46272458 | None:intergenic |
| TCAACAAATACAACTTCATA+GGG | 0.541440 | 6.4:-46273032 | None:intergenic |
| TGCAAAGAGGAGCAAAGAAA+GGG | 0.546163 | 6.4:-46272463 | None:intergenic |
| ATCAACCAACACCCACTTGG+AGG | 0.563736 | 6.4:-46272790 | None:intergenic |
| TGAATCCTCCAAGTGGGTGT+TGG | 0.564748 | 6.4:+46272785 | MS.gene062651:CDS |
| ATGATATAGAATGTGCCACC+AGG | 0.576586 | 6.4:-46272561 | None:intergenic |
| TTAACAAATTAACTGGACCA+TGG | 0.578865 | 6.4:+46272817 | MS.gene062651:CDS |
| GGTGGTACTGAAGATAATGA+AGG | 0.579997 | 6.4:+46272849 | MS.gene062651:CDS |
| ATCATAACAAGCACCAGGTG+GGG | 0.587156 | 6.4:-46272955 | None:intergenic |
| TTGGAGGATTCAGCACACTC+GGG | 0.592441 | 6.4:-46272774 | None:intergenic |
| CCAATATCATAACAAGCACC+AGG | 0.593116 | 6.4:-46272960 | None:intergenic |
| TCAATCTTTGGAGCAGCTGG+TGG | 0.597041 | 6.4:+46272588 | MS.gene062651:CDS |
| TGCGATATCAAGTGGTGTGT+TGG | 0.602143 | 6.4:-46272739 | None:intergenic |
| TATCATAACAAGCACCAGGT+GGG | 0.615337 | 6.4:-46272956 | None:intergenic |
| GCTGGTGGTGGATTGAGGCT+TGG | 0.621479 | 6.4:+46272603 | MS.gene062651:CDS |
| AGGCAGACCATTGACAACCT+CGG | 0.627216 | 6.4:-46272673 | None:intergenic |
| AGTTTAGCAGGATAGGTGCA+GGG | 0.629579 | 6.4:+46272700 | MS.gene062651:CDS |
| AAATTAACTGGACCATGGGT+GGG | 0.632486 | 6.4:+46272822 | MS.gene062651:CDS |
| GTGCTTGTTATGATATTGGG+AGG | 0.648866 | 6.4:+46272964 | MS.gene062651:CDS |
| GTACCACCAATACCCACCCA+TGG | 0.653889 | 6.4:-46272834 | None:intergenic |
| GGCATGATGACTTTACTGGA+AGG | 0.654511 | 6.4:+46272985 | MS.gene062651:CDS |
| AGCAGGTGGTTAATGCAAAG+AGG | 0.657549 | 6.4:-46272476 | None:intergenic |
| TGTACTTCAAGATTATTCCG+AGG | 0.666999 | 6.4:+46272656 | MS.gene062651:CDS |
| GTGTGCTGAATCCTCCAAGT+GGG | 0.686035 | 6.4:+46272779 | MS.gene062651:CDS |
| ATATCATAACAAGCACCAGG+TGG | 0.697776 | 6.4:-46272957 | None:intergenic |
| AAAAGCTAATGAAAAGCAGG+TGG | 0.699196 | 6.4:-46272490 | None:intergenic |
| AGTGTGCTGAATCCTCCAAG+TGG | 0.720736 | 6.4:+46272778 | MS.gene062651:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTTTAAAATTCAAAAACA+TGG | + | chr6.4:46272891-46272910 | MS.gene062651:CDS | 15.0% |
| !!! | GATGATTTTAACAAATTAAC+TGG | + | chr6.4:46272810-46272829 | MS.gene062651:CDS | 20.0% |
| ! | ATCAACAAATACAACTTCAT+AGG | - | chr6.4:46273036-46273055 | None:intergenic | 25.0% |
| ! | TCAACAAATACAACTTCATA+GGG | - | chr6.4:46273035-46273054 | None:intergenic | 25.0% |
| GAACAAGTTATTGACACAAA+TGG | + | chr6.4:46272525-46272544 | MS.gene062651:CDS | 30.0% | |
| GAAGGTAAGCATATTATAGA+TGG | + | chr6.4:46272867-46272886 | MS.gene062651:CDS | 30.0% | |
| TAACAAATTAACTGGACCAT+GGG | + | chr6.4:46272818-46272837 | MS.gene062651:CDS | 30.0% | |
| TAATCTTGAAGTACAGTAAG+TGG | - | chr6.4:46272651-46272670 | None:intergenic | 30.0% | |
| TATATCATGCCATCAATCTT+TGG | + | chr6.4:46272576-46272595 | MS.gene062651:CDS | 30.0% | |
| TTAACAAATTAACTGGACCA+TGG | + | chr6.4:46272817-46272836 | MS.gene062651:CDS | 30.0% | |
| ! | TAAAGATCTTCCATTTTGAG+AGG | - | chr6.4:46273060-46273079 | None:intergenic | 30.0% |
| AAAAGCTAATGAAAAGCAGG+TGG | - | chr6.4:46272493-46272512 | None:intergenic | 35.0% | |
| AAAGAAAGGGTAAGGAATGT+AGG | - | chr6.4:46272453-46272472 | None:intergenic | 35.0% | |
| CTTGTAAATGCGATATCAAG+TGG | - | chr6.4:46272750-46272769 | None:intergenic | 35.0% | |
| TGCAAAAGCTAATGAAAAGC+AGG | - | chr6.4:46272496-46272515 | None:intergenic | 35.0% | |
| TGTACTTCAAGATTATTCCG+AGG | + | chr6.4:46272656-46272675 | MS.gene062651:CDS | 35.0% | |
| TTTGTTGATGCCTCTCAAAA+TGG | + | chr6.4:46273047-46273066 | MS.gene062651:CDS | 35.0% | |
| !! | AATGGAAACCCTATTTTTCC+TGG | + | chr6.4:46272543-46272562 | MS.gene062651:CDS | 35.0% |
| !! | CTGGTGCTTGTTATGATATT+GGG | + | chr6.4:46272961-46272980 | MS.gene062651:CDS | 35.0% |
| AAATTAACTGGACCATGGGT+GGG | + | chr6.4:46272822-46272841 | MS.gene062651:CDS | 40.0% | |
| AATGTGCCACCAGGAAAAAT+AGG | - | chr6.4:46272555-46272574 | None:intergenic | 40.0% | |
| ATATCATAACAAGCACCAGG+TGG | - | chr6.4:46272960-46272979 | None:intergenic | 40.0% | |
| ATGATATAGAATGTGCCACC+AGG | - | chr6.4:46272564-46272583 | None:intergenic | 40.0% | |
| ATGCAAAGAGGAGCAAAGAA+AGG | - | chr6.4:46272467-46272486 | None:intergenic | 40.0% | |
| ATGTGCCACCAGGAAAAATA+GGG | - | chr6.4:46272554-46272573 | None:intergenic | 40.0% | |
| CATAGGGATCATTATTAGCC+AGG | - | chr6.4:46273019-46273038 | None:intergenic | 40.0% | |
| CCAATATCATAACAAGCACC+AGG | - | chr6.4:46272963-46272982 | None:intergenic | 40.0% | |
| CCTATCCTGCTAAACTTTAC+AGG | - | chr6.4:46272696-46272715 | None:intergenic | 40.0% | |
| CCTGTAAAGTTTAGCAGGAT+AGG | + | chr6.4:46272693-46272712 | MS.gene062651:CDS | 40.0% | |
| GATTATTCCGAGGTTGTCAA+TGG | + | chr6.4:46272666-46272685 | MS.gene062651:CDS | 40.0% | |
| TATCATAACAAGCACCAGGT+GGG | - | chr6.4:46272959-46272978 | None:intergenic | 40.0% | |
| TGCAAAGAGGAGCAAAGAAA+GGG | - | chr6.4:46272466-46272485 | None:intergenic | 40.0% | |
| TGGACAGAACACAAACTTGT+AGG | - | chr6.4:46272925-46272944 | None:intergenic | 40.0% | |
| ! | GGTGGTACTGAAGATAATGA+AGG | + | chr6.4:46272849-46272868 | MS.gene062651:CDS | 40.0% |
| !! | CCTGGTGCTTGTTATGATAT+TGG | + | chr6.4:46272960-46272979 | MS.gene062651:CDS | 40.0% |
| !! | GTGCTTGTTATGATATTGGG+AGG | + | chr6.4:46272964-46272983 | MS.gene062651:CDS | 40.0% |
| AAGTTTAGCAGGATAGGTGC+AGG | + | chr6.4:46272699-46272718 | MS.gene062651:CDS | 45.0% | |
| AGAGGAGCAAAGAAAGGGTA+AGG | - | chr6.4:46272461-46272480 | None:intergenic | 45.0% | |
| AGCAGGTGGTTAATGCAAAG+AGG | - | chr6.4:46272479-46272498 | None:intergenic | 45.0% | |
| AGTTTAGCAGGATAGGTGCA+GGG | + | chr6.4:46272700-46272719 | MS.gene062651:CDS | 45.0% | |
| ATCATAACAAGCACCAGGTG+GGG | - | chr6.4:46272958-46272977 | None:intergenic | 45.0% | |
| ATCATCAACCAACACCCACT+TGG | - | chr6.4:46272796-46272815 | None:intergenic | 45.0% | |
| CAAATTAACTGGACCATGGG+TGG | + | chr6.4:46272821-46272840 | MS.gene062651:CDS | 45.0% | |
| GGCATGATGACTTTACTGGA+AGG | + | chr6.4:46272985-46273004 | MS.gene062651:CDS | 45.0% | |
| GTCTGCCTGTAAAGTTTAGC+AGG | + | chr6.4:46272688-46272707 | MS.gene062651:CDS | 45.0% | |
| TGACTTTACTGGAAGGCTTC+TGG | + | chr6.4:46272992-46273011 | MS.gene062651:CDS | 45.0% | |
| TGCGATATCAAGTGGTGTGT+TGG | - | chr6.4:46272742-46272761 | None:intergenic | 45.0% | |
| !! | GGAAACCCTATTTTTCCTGG+TGG | + | chr6.4:46272546-46272565 | MS.gene062651:CDS | 45.0% |
| AGGCAGACCATTGACAACCT+CGG | - | chr6.4:46272676-46272695 | None:intergenic | 50.0% | |
| AGTGTGCTGAATCCTCCAAG+TGG | + | chr6.4:46272778-46272797 | MS.gene062651:CDS | 50.0% | |
| ATCAACCAACACCCACTTGG+AGG | - | chr6.4:46272793-46272812 | None:intergenic | 50.0% | |
| CCAGCTGCTCCAAAGATTGA+TGG | - | chr6.4:46272588-46272607 | None:intergenic | 50.0% | |
| CTTGGAGGATTCAGCACACT+CGG | - | chr6.4:46272778-46272797 | None:intergenic | 50.0% | |
| GTGTGCTGAATCCTCCAAGT+GGG | + | chr6.4:46272779-46272798 | MS.gene062651:CDS | 50.0% | |
| TGAATCCTCCAAGTGGGTGT+TGG | + | chr6.4:46272785-46272804 | MS.gene062651:CDS | 50.0% | |
| TTGGAGGATTCAGCACACTC+GGG | - | chr6.4:46272777-46272796 | None:intergenic | 50.0% | |
| ! | GGGAGGCATGATGACTTTAC+TGG | + | chr6.4:46272981-46273000 | MS.gene062651:CDS | 50.0% |
| !! | CCATCAATCTTTGGAGCAGC+TGG | + | chr6.4:46272585-46272604 | MS.gene062651:CDS | 50.0% |
| !! | TCAATCTTTGGAGCAGCTGG+TGG | + | chr6.4:46272588-46272607 | MS.gene062651:CDS | 50.0% |
| ACTGGACCATGGGTGGGTAT+TGG | + | chr6.4:46272828-46272847 | MS.gene062651:CDS | 55.0% | |
| GTACCACCAATACCCACCCA+TGG | - | chr6.4:46272837-46272856 | None:intergenic | 55.0% | |
| TACTGGAAGGCTTCTGGTCC+TGG | + | chr6.4:46272998-46273017 | MS.gene062651:CDS | 55.0% | |
| !! | ATCTTTGGAGCAGCTGGTGG+TGG | + | chr6.4:46272591-46272610 | MS.gene062651:CDS | 55.0% |
| CCAGGTGGGGCAGTGATAGA+TGG | - | chr6.4:46272945-46272964 | None:intergenic | 60.0% | |
| CCATCTATCACTGCCCCACC+TGG | + | chr6.4:46272942-46272961 | MS.gene062651:CDS | 60.0% | |
| !! | GAGCAGCTGGTGGTGGATTG+AGG | + | chr6.4:46272598-46272617 | MS.gene062651:CDS | 60.0% |
| !! | GCTGGTGGTGGATTGAGGCT+TGG | + | chr6.4:46272603-46272622 | MS.gene062651:CDS | 60.0% |
| !! | GGACCATGGGTGGGTATTGG+TGG | + | chr6.4:46272831-46272850 | MS.gene062651:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 46272444 | 46273085 | 46272444 | ID=MS.gene062651 |
| chr6.4 | mRNA | 46272444 | 46273085 | 46272444 | ID=MS.gene062651.t1;Parent=MS.gene062651 |
| chr6.4 | exon | 46272444 | 46273085 | 46272444 | ID=MS.gene062651.t1.exon1;Parent=MS.gene062651.t1 |
| chr6.4 | CDS | 46272444 | 46273085 | 46272444 | ID=cds.MS.gene062651.t1;Parent=MS.gene062651.t1 |
| Gene Sequence |
| Protein sequence |
