Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063118.t1 | XP_003604013.1 | 94 | 470 | 26 | 1 | 1 | 470 | 1 | 468 | 3.60E-198 | 701 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063118.t1 | Q9T0J6 | 46.5 | 471 | 203 | 7 | 15 | 470 | 32 | 468 | 5.4e-102 | 372.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063118.t1 | G7J7T8 | 94.0 | 470 | 26 | 1 | 1 | 470 | 1 | 468 | 2.6e-198 | 701.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene063118.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene063118 | 0.810516 | 1.11E-50 | -1.69E-46 |
| MS.gene050085 | MS.gene063118 | 0.808174 | 3.53E-50 | -1.69E-46 |
| MS.gene050277 | MS.gene063118 | 0.801021 | 1.10E-48 | -1.69E-46 |
| MS.gene050689 | MS.gene063118 | 0.84344 | 1.40E-58 | -1.69E-46 |
| MS.gene050877 | MS.gene063118 | 0.857823 | 1.26E-62 | -1.69E-46 |
| MS.gene051328 | MS.gene063118 | 0.813573 | 2.39E-51 | -1.69E-46 |
| MS.gene05364 | MS.gene063118 | 0.808759 | 2.64E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene063118 | 0.800917 | 1.15E-48 | -1.69E-46 |
| MS.gene05978 | MS.gene063118 | 0.869595 | 2.75E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene063118 | MS.gene40016 | PPI |
| MS.gene063118 | MS.gene004699 | PPI |
| MS.gene063118 | MS.gene32083 | PPI |
| MS.gene063118 | MS.gene036254 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063118.t1 | MTR_3g117580 | 95.319 | 470 | 20 | 1 | 1 | 470 | 1 | 468 | 0.0 | 911 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063118.t1 | AT4G38890 | 52.575 | 466 | 182 | 11 | 15 | 470 | 32 | 468 | 6.39e-149 | 441 |
| MS.gene063118.t1 | AT3G49640 | 32.000 | 150 | 86 | 4 | 336 | 470 | 1 | 149 | 1.38e-11 | 65.9 |
| MS.gene063118.t1 | AT3G49640 | 32.000 | 150 | 86 | 4 | 336 | 470 | 1 | 149 | 2.07e-11 | 65.5 |
| MS.gene063118.t1 | AT3G49640 | 32.000 | 150 | 86 | 4 | 336 | 470 | 1 | 149 | 2.20e-11 | 64.3 |
Find 105 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCATCTGAAGATTTATT+TGG | 0.158032 | 3.4:+99890214 | MS.gene063118:CDS |
| AAAAGAAGCTTATTGATTTC+AGG | 0.171029 | 3.4:+99889645 | MS.gene063118:CDS |
| TCTGAAGGGGCTTGCCCTTA+TGG | 0.207997 | 3.4:+99888424 | MS.gene063118:CDS |
| TTTGAGTTTGGCATCAGTTT+TGG | 0.209531 | 3.4:-99888581 | None:intergenic |
| CGGAGAGTTTGCAAAGTATT+AGG | 0.224724 | 3.4:+99889716 | MS.gene063118:CDS |
| TTCAAGCTTAGATCAGTTTC+TGG | 0.235550 | 3.4:-99889608 | None:intergenic |
| TATTGACATTGTTGTGAATA+AGG | 0.254656 | 3.4:+99890339 | MS.gene063118:CDS |
| GAAAATACCTTTATAGTTAC+TGG | 0.254912 | 3.4:-99890439 | None:intergenic |
| GGCAATGTGCACAAATCTTT+TGG | 0.260235 | 3.4:+99889763 | MS.gene063118:CDS |
| GAGGGTGGCGAGGATGATTC+TGG | 0.262956 | 3.4:+99887880 | MS.gene063118:CDS |
| AAGGAAAGGTGTGAAGTTAA+TGG | 0.263218 | 3.4:+99888508 | MS.gene063118:CDS |
| CTGTTGGAAATCTCCCTTTC+CGG | 0.300157 | 3.4:+99889696 | MS.gene063118:CDS |
| TTCAATCCGTTAGAAGATAA+AGG | 0.302002 | 3.4:-99888487 | None:intergenic |
| ACAGCTCGCCCTACAGTATC+TGG | 0.309018 | 3.4:-99890259 | None:intergenic |
| AGTGCAGAAATTGGCTGATT+TGG | 0.309679 | 3.4:+99888378 | MS.gene063118:intron |
| TCACCTGACTTGGCAATGTT+TGG | 0.321046 | 3.4:-99888210 | None:intergenic |
| TGCAGCTTCCGTCCACAATT+TGG | 0.322863 | 3.4:-99889547 | None:intergenic |
| CTGAAGGGGCTTGCCCTTAT+GGG | 0.347394 | 3.4:+99888425 | MS.gene063118:CDS |
| TTCTTCTCCTTGGCGAGAAC+GGG | 0.350694 | 3.4:-99888042 | None:intergenic |
| TTATTCACAACAATGTCAAT+AGG | 0.366558 | 3.4:-99890337 | None:intergenic |
| ACTCAAACGTGAACGTCTTC+AGG | 0.379434 | 3.4:+99888077 | MS.gene063118:CDS |
| TGAAATAACATGCGGTGAAA+TGG | 0.380122 | 3.4:+99889742 | MS.gene063118:CDS |
| CGAATGAAGTCCTTCTTAAC+AGG | 0.389902 | 3.4:-99887964 | None:intergenic |
| ACTCAAAACTCTTGGTCTCT+TGG | 0.396620 | 3.4:+99888597 | MS.gene063118:CDS |
| CGATATTCCAGTAACTATAA+AGG | 0.408639 | 3.4:+99890432 | MS.gene063118:CDS |
| AAAGAAGCTTATTGATTTCA+GGG | 0.413252 | 3.4:+99889646 | MS.gene063118:CDS |
| CTGATGATGACGGCTCTTGT+GGG | 0.420813 | 3.4:+99889239 | MS.gene063118:CDS |
| CCTTGAATGCTTGAATATCA+TGG | 0.425429 | 3.4:-99888272 | None:intergenic |
| TTTATCTTCTAACGGATTGA+AGG | 0.427366 | 3.4:+99888489 | MS.gene063118:CDS |
| TCAAGCTTAGATCAGTTTCT+GGG | 0.431326 | 3.4:-99889607 | None:intergenic |
| GCCCCTTCAGATTTCAGAAA+AGG | 0.433089 | 3.4:-99888412 | None:intergenic |
| ATTATTCAGAATAAGTCAAA+AGG | 0.433111 | 3.4:+99889100 | MS.gene063118:intron |
| TATTCACAACAATGTCAATA+GGG | 0.433555 | 3.4:-99890336 | None:intergenic |
| GCGTTTAGATTTCTTCTCCT+TGG | 0.436186 | 3.4:-99888052 | None:intergenic |
| TGTCCAAACATTGCCAAGTC+AGG | 0.437155 | 3.4:+99888207 | MS.gene063118:CDS |
| ATTGACATTGTTGTGAATAA+GGG | 0.443562 | 3.4:+99890340 | MS.gene063118:CDS |
| TCTGATGATGACGGCTCTTG+TGG | 0.451639 | 3.4:+99889238 | MS.gene063118:CDS |
| AATCTACAGGATAACCCATA+AGG | 0.452239 | 3.4:-99888439 | None:intergenic |
| AGAACGGGAGGTTTGTCGTT+AGG | 0.455603 | 3.4:-99888027 | None:intergenic |
| CTTGCACCCTTGACCACTGT+TGG | 0.457396 | 3.4:+99889680 | MS.gene063118:CDS |
| CCATGATATTCAAGCATTCA+AGG | 0.465143 | 3.4:+99888272 | MS.gene063118:CDS |
| TATTCAAGCATTCAAGGAAC+AGG | 0.470870 | 3.4:+99888278 | MS.gene063118:CDS |
| AGTAGTAGAAGTAGTTCGAT+CGG | 0.471860 | 3.4:-99887995 | None:intergenic |
| CAAATAAATCTTCAGATGAA+TGG | 0.475342 | 3.4:-99890213 | None:intergenic |
| ATCTACAGGATAACCCATAA+GGG | 0.490649 | 3.4:-99888438 | None:intergenic |
| AGCTGTTGAACTAATAGAAA+AGG | 0.491306 | 3.4:+99890276 | MS.gene063118:CDS |
| CTAATACTTTGCAAACTCTC+CGG | 0.503430 | 3.4:-99889715 | None:intergenic |
| GAGATTTCCAACAGTGGTCA+AGG | 0.504165 | 3.4:-99889687 | None:intergenic |
| TTTCTTCTCCTTGGCGAGAA+CGG | 0.504371 | 3.4:-99888043 | None:intergenic |
| AGTGTTGTAGAAGTAGCTTC+AGG | 0.504684 | 3.4:+99890403 | MS.gene063118:CDS |
| CTTCTAACGGATTGAAGGAA+AGG | 0.507476 | 3.4:+99888494 | MS.gene063118:CDS |
| GAAGTAGTTCGATCGGGAGG+AGG | 0.507762 | 3.4:-99887988 | None:intergenic |
| ATGCATAGCTCCTGTTAAGA+AGG | 0.509595 | 3.4:+99887954 | MS.gene063118:CDS |
| CTTTGCAAACTCTCCGGAAA+GGG | 0.509906 | 3.4:-99889709 | None:intergenic |
| TATTTGGTGTACAAATCTGT+GGG | 0.518175 | 3.4:+99890230 | MS.gene063118:CDS |
| AGGGTGGCGAGGATGATTCT+GGG | 0.519642 | 3.4:+99887881 | MS.gene063118:CDS |
| GGTAAGCCTTTATCTTCTAA+CGG | 0.521576 | 3.4:+99888481 | MS.gene063118:CDS |
| AATAGGGTCAAGCTTCAGAA+TGG | 0.525188 | 3.4:+99890176 | MS.gene063118:intron |
| GATGCCAAACTCAAAACTCT+TGG | 0.527301 | 3.4:+99888589 | MS.gene063118:CDS |
| GCAGAAATTGGCTGATTTGG+AGG | 0.528457 | 3.4:+99888381 | MS.gene063118:intron |
| AGGTTTGTCGTTAGGAGCAG+AGG | 0.532676 | 3.4:-99888019 | None:intergenic |
| GGAATTAACATCACCTGACT+TGG | 0.533236 | 3.4:-99888220 | None:intergenic |
| TTCTCCTTGGCGAGAACGGG+AGG | 0.534154 | 3.4:-99888039 | None:intergenic |
| AACTTAGAATCTGAGTCAGC+AGG | 0.536668 | 3.4:-99889265 | None:intergenic |
| GTAGTAGAAGTAGTTCGATC+GGG | 0.539289 | 3.4:-99887994 | None:intergenic |
| TCTTGCGATCAGTTGTTCGA+TGG | 0.544926 | 3.4:-99887932 | None:intergenic |
| CGCAGAAAATTGTGAAGATG+AGG | 0.547997 | 3.4:+99889378 | MS.gene063118:CDS |
| TTATTTGGTGTACAAATCTG+TGG | 0.548788 | 3.4:+99890229 | MS.gene063118:CDS |
| ATTGTTGTGAATAAGGGTGC+TGG | 0.557588 | 3.4:+99890346 | MS.gene063118:CDS |
| ATAGGGTCAAGCTTCAGAAT+GGG | 0.559018 | 3.4:+99890177 | MS.gene063118:intron |
| TTGTGCGGTTACATCTGACT+TGG | 0.563691 | 3.4:+99889183 | MS.gene063118:CDS |
| AGCGAAAATGGAGGGTGGCG+AGG | 0.566641 | 3.4:+99887870 | None:intergenic |
| AGATTTCATTGATATAAACA+TGG | 0.570150 | 3.4:+99890309 | MS.gene063118:CDS |
| GAAGACGTTCACGTTTGAGT+TGG | 0.577856 | 3.4:-99888074 | None:intergenic |
| ATTTAGAGAGCGAAAATGGA+GGG | 0.578238 | 3.4:+99887862 | None:intergenic |
| GATGAGGAGACGGAAAATGA+AGG | 0.581481 | 3.4:+99889394 | MS.gene063118:CDS |
| TTATTCAGAATAAGTCAAAA+GGG | 0.583832 | 3.4:+99889101 | MS.gene063118:intron |
| ATAAGATCTGAATCAGAGGC+AGG | 0.586531 | 3.4:+99889569 | MS.gene063118:CDS |
| GGCGAGGATGATTCTGGGAA+GGG | 0.586709 | 3.4:+99887886 | MS.gene063118:CDS |
| ACTTGGCAATGTTTGGACAA+AGG | 0.587871 | 3.4:-99888203 | None:intergenic |
| GGGCACATCCAGATACTGTA+GGG | 0.597587 | 3.4:+99890251 | MS.gene063118:CDS |
| AAATTGTGAAGATGAGGAGA+CGG | 0.597649 | 3.4:+99889384 | MS.gene063118:CDS |
| GATTTCATTGATATAAACAT+GGG | 0.598109 | 3.4:+99890310 | MS.gene063118:CDS |
| CAGAAATTGGCTGATTTGGA+GGG | 0.598151 | 3.4:+99888382 | MS.gene063118:intron |
| GGGGCACATCCAGATACTGT+AGG | 0.600909 | 3.4:+99890250 | MS.gene063118:CDS |
| TGGCGAGGATGATTCTGGGA+AGG | 0.606139 | 3.4:+99887885 | MS.gene063118:CDS |
| ACTTTGCAAACTCTCCGGAA+AGG | 0.609314 | 3.4:-99889710 | None:intergenic |
| CAAACCTCCCGTTCTCGCCA+AGG | 0.612861 | 3.4:+99888035 | MS.gene063118:CDS |
| CGCCATCAGTCTGATGATGA+CGG | 0.614570 | 3.4:+99889229 | MS.gene063118:CDS |
| CAAGCTTAGATCAGTTTCTG+GGG | 0.615452 | 3.4:-99889606 | None:intergenic |
| GATGTTATAAAAGATGATGA+TGG | 0.618144 | 3.4:+99889301 | MS.gene063118:CDS |
| TGATGATGACGGCTCTTGTG+GGG | 0.619036 | 3.4:+99889240 | MS.gene063118:CDS |
| AGATTTCCAACAGTGGTCAA+GGG | 0.619386 | 3.4:-99889686 | None:intergenic |
| CTGCATAAGATCTGAATCAG+AGG | 0.625016 | 3.4:+99889565 | MS.gene063118:CDS |
| AGCCGTCATCATCAGACTGA+TGG | 0.627690 | 3.4:-99889231 | None:intergenic |
| GAGTGTTGATGACCAAATTG+TGG | 0.636784 | 3.4:+99889535 | MS.gene063118:CDS |
| GTAGAAGTAGTTCGATCGGG+AGG | 0.637202 | 3.4:-99887991 | None:intergenic |
| TGATGACAATGGTTCTTGTG+CGG | 0.672149 | 3.4:+99889168 | MS.gene063118:CDS |
| GACTTGGAAAACAAAGACGA+TGG | 0.672348 | 3.4:+99889199 | MS.gene063118:CDS |
| ATTTGGTGTACAAATCTGTG+GGG | 0.684676 | 3.4:+99890231 | MS.gene063118:CDS |
| TGTGTTTCGTCTGATGACAA+TGG | 0.684701 | 3.4:+99889157 | MS.gene063118:CDS |
| GTTGATGACCAAATTGTGGA+CGG | 0.696468 | 3.4:+99889539 | MS.gene063118:CDS |
| TAGAGAGCGAAAATGGAGGG+TGG | 0.698133 | 3.4:+99887865 | None:intergenic |
| GAAAGGGAGATTTCCAACAG+TGG | 0.699664 | 3.4:-99889693 | None:intergenic |
| TTAGGAGCTGAAATAACATG+CGG | 0.710264 | 3.4:+99889734 | MS.gene063118:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGTTTATTAATTTACAA+GGG | + | chr3.4:99888334-99888353 | MS.gene063118:intron | 10.0% |
| !! | ATTGTTTATTAATTTACAAG+GGG | + | chr3.4:99888335-99888354 | MS.gene063118:intron | 15.0% |
| !! | CAATTGTTTATTAATTTACA+AGG | + | chr3.4:99888333-99888352 | MS.gene063118:intron | 15.0% |
| !!! | ATAATTTTGCTTTTGTAATA+GGG | + | chr3.4:99890160-99890179 | MS.gene063118:intron | 15.0% |
| !!! | GTGTGTTTTTAATTTTAATA+TGG | + | chr3.4:99889009-99889028 | MS.gene063118:intron | 15.0% |
| !! | AATTAAAACTGAGTTCTTAA+AGG | - | chr3.4:99889055-99889074 | None:intergenic | 20.0% |
| !! | AATTTGAGCAATGATAATAA+AGG | - | chr3.4:99888976-99888995 | None:intergenic | 20.0% |
| !! | AGATTTCATTGATATAAACA+TGG | + | chr3.4:99890309-99890328 | MS.gene063118:CDS | 20.0% |
| !! | AGCTATTTATATAGAAAAGA+AGG | - | chr3.4:99888110-99888129 | None:intergenic | 20.0% |
| !! | ATGTGTATTTAAAAATCTAC+AGG | - | chr3.4:99888455-99888474 | None:intergenic | 20.0% |
| !! | ATTATTCAGAATAAGTCAAA+AGG | + | chr3.4:99889100-99889119 | MS.gene063118:intron | 20.0% |
| !! | GATTTCATTGATATAAACAT+GGG | + | chr3.4:99890310-99890329 | MS.gene063118:CDS | 20.0% |
| !! | GCTATTTATATAGAAAAGAA+GGG | - | chr3.4:99888109-99888128 | None:intergenic | 20.0% |
| !! | TTATTCAGAATAAGTCAAAA+GGG | + | chr3.4:99889101-99889120 | MS.gene063118:intron | 20.0% |
| !! | TTGTTTATTAATTTACAAGG+GGG | + | chr3.4:99888336-99888355 | MS.gene063118:intron | 20.0% |
| !! | TTTCATAGCAATTATGAATT+CGG | - | chr3.4:99888679-99888698 | None:intergenic | 20.0% |
| !!! | AATTATTGGTTCCTATATTA+AGG | - | chr3.4:99889984-99890003 | None:intergenic | 20.0% |
| !!! | ACTTGATAAATTCATTTTAG+GGG | - | chr3.4:99889925-99889944 | None:intergenic | 20.0% |
| !!! | ATTTTTAAATACACATCAAG+AGG | + | chr3.4:99888459-99888478 | MS.gene063118:CDS | 20.0% |
| !!! | CACTTGATAAATTCATTTTA+GGG | - | chr3.4:99889926-99889945 | None:intergenic | 20.0% |
| !!! | CATAATTTTGCTTTTGTAAT+AGG | + | chr3.4:99890159-99890178 | MS.gene063118:intron | 20.0% |
| !!! | TATATTTTGATACCAATTTC+AGG | + | chr3.4:99889866-99889885 | MS.gene063118:intron | 20.0% |
| !!! | TCACTTGATAAATTCATTTT+AGG | - | chr3.4:99889927-99889946 | None:intergenic | 20.0% |
| !!! | TTTTTAAATACACATCAAGA+GGG | + | chr3.4:99888460-99888479 | MS.gene063118:CDS | 20.0% |
| ! | ATTATTCATCAATATGCTAC+TGG | + | chr3.4:99888886-99888905 | MS.gene063118:intron | 25.0% |
| ! | ATTGACATTGTTGTGAATAA+GGG | + | chr3.4:99890340-99890359 | MS.gene063118:CDS | 25.0% |
| ! | CAAATAAATCTTCAGATGAA+TGG | - | chr3.4:99890216-99890235 | None:intergenic | 25.0% |
| ! | CATTCATCTGAAGATTTATT+TGG | + | chr3.4:99890214-99890233 | MS.gene063118:CDS | 25.0% |
| ! | GATGTTATAAAAGATGATGA+TGG | + | chr3.4:99889301-99889320 | MS.gene063118:CDS | 25.0% |
| ! | TATTCACAACAATGTCAATA+GGG | - | chr3.4:99890339-99890358 | None:intergenic | 25.0% |
| ! | TATTGACATTGTTGTGAATA+AGG | + | chr3.4:99890339-99890358 | MS.gene063118:CDS | 25.0% |
| ! | TGTTTATTAATTTACAAGGG+GGG | + | chr3.4:99888337-99888356 | MS.gene063118:intron | 25.0% |
| ! | TTATTCACAACAATGTCAAT+AGG | - | chr3.4:99890340-99890359 | None:intergenic | 25.0% |
| !! | AATAATGATCGATTCAAATG+TGG | - | chr3.4:99889086-99889105 | None:intergenic | 25.0% |
| !!! | AAAAGAAGCTTATTGATTTC+AGG | + | chr3.4:99889645-99889664 | MS.gene063118:CDS | 25.0% |
| !!! | AAAATTTTTCAAAACTCTGC+TGG | + | chr3.4:99890011-99890030 | MS.gene063118:intron | 25.0% |
| !!! | AAAGAAGCTTATTGATTTCA+GGG | + | chr3.4:99889646-99889665 | MS.gene063118:CDS | 25.0% |
| !!! | AAATTTTTCAAAACTCTGCT+GGG | + | chr3.4:99890012-99890031 | MS.gene063118:intron | 25.0% |
| AAGACAAATACCAAACTATG+TGG | - | chr3.4:99889898-99889917 | None:intergenic | 30.0% | |
| ACTTTAGTGCTTATAGTCTA+TGG | + | chr3.4:99889434-99889453 | MS.gene063118:intron | 30.0% | |
| AGACAAATACCAAACTATGT+GGG | - | chr3.4:99889897-99889916 | None:intergenic | 30.0% | |
| AGCTGTTGAACTAATAGAAA+AGG | + | chr3.4:99890276-99890295 | MS.gene063118:CDS | 30.0% | |
| ATCCTGAGTATGATGTATAT+AGG | + | chr3.4:99889823-99889842 | MS.gene063118:intron | 30.0% | |
| ATGAATAATTACAAGCGCAT+TGG | - | chr3.4:99888875-99888894 | None:intergenic | 30.0% | |
| GAACGTTGAAACCTTAATAT+AGG | + | chr3.4:99889970-99889989 | MS.gene063118:intron | 30.0% | |
| GCAAAAGAAAAGAAAAGATG+AGG | - | chr3.4:99890097-99890116 | None:intergenic | 30.0% | |
| TAATAAAGGAACACTGACAA+AGG | - | chr3.4:99888962-99888981 | None:intergenic | 30.0% | |
| TCAACTAGAATTGAATGCAA+AGG | - | chr3.4:99889486-99889505 | None:intergenic | 30.0% | |
| TCCTGAGTATGATGTATATA+GGG | + | chr3.4:99889824-99889843 | MS.gene063118:intron | 30.0% | |
| TTCAATCCGTTAGAAGATAA+AGG | - | chr3.4:99888490-99888509 | None:intergenic | 30.0% | |
| ! | AAACGACAGTTTTCTTGATA+AGG | - | chr3.4:99888249-99888268 | None:intergenic | 30.0% |
| ! | AAGATGTTCAGAAGCTTTTA+TGG | + | chr3.4:99888539-99888558 | MS.gene063118:CDS | 30.0% |
| ! | TGCGGTTTTTCTTTTCTTTT+GGG | - | chr3.4:99889362-99889381 | None:intergenic | 30.0% |
| ! | TTTCTAGTGTACTACTATGT+AGG | - | chr3.4:99888848-99888867 | None:intergenic | 30.0% |
| !! | TATTTGGTGTACAAATCTGT+GGG | + | chr3.4:99890230-99890249 | MS.gene063118:CDS | 30.0% |
| !! | TTATTTGGTGTACAAATCTG+TGG | + | chr3.4:99890229-99890248 | MS.gene063118:CDS | 30.0% |
| !! | TTTATCTTCTAACGGATTGA+AGG | + | chr3.4:99888489-99888508 | MS.gene063118:CDS | 30.0% |
| AAATTGTGAAGATGAGGAGA+CGG | + | chr3.4:99889384-99889403 | MS.gene063118:CDS | 35.0% | |
| AATCTACAGGATAACCCATA+AGG | - | chr3.4:99888442-99888461 | None:intergenic | 35.0% | |
| AATGCCGTCAAAAACAAAGA+TGG | + | chr3.4:99889124-99889143 | MS.gene063118:CDS | 35.0% | |
| AGGCATAACATGAACAACAA+CGG | - | chr3.4:99888643-99888662 | None:intergenic | 35.0% | |
| AGTAGTAGAAGTAGTTCGAT+CGG | - | chr3.4:99887998-99888017 | None:intergenic | 35.0% | |
| ATCTACAGGATAACCCATAA+GGG | - | chr3.4:99888441-99888460 | None:intergenic | 35.0% | |
| CAGAACAAAACAAAGAGGAT+GGG | - | chr3.4:99890063-99890082 | None:intergenic | 35.0% | |
| CCATGATATTCAAGCATTCA+AGG | + | chr3.4:99888272-99888291 | MS.gene063118:CDS | 35.0% | |
| CCTTGAATGCTTGAATATCA+TGG | - | chr3.4:99888275-99888294 | None:intergenic | 35.0% | |
| CTAATACTTTGCAAACTCTC+CGG | - | chr3.4:99889718-99889737 | None:intergenic | 35.0% | |
| GGTAAGCCTTTATCTTCTAA+CGG | + | chr3.4:99888481-99888500 | MS.gene063118:CDS | 35.0% | |
| TAGCTTCATATTGCTGAAAC+AGG | + | chr3.4:99889509-99889528 | MS.gene063118:intron | 35.0% | |
| TATTCAAGCATTCAAGGAAC+AGG | + | chr3.4:99888278-99888297 | MS.gene063118:CDS | 35.0% | |
| TCAAGCTTAGATCAGTTTCT+GGG | - | chr3.4:99889610-99889629 | None:intergenic | 35.0% | |
| TCCCTATATACATCATACTC+AGG | - | chr3.4:99889828-99889847 | None:intergenic | 35.0% | |
| TGAAATAACATGCGGTGAAA+TGG | + | chr3.4:99889742-99889761 | MS.gene063118:CDS | 35.0% | |
| TGAGATAGTATATCCTCCAT+AGG | + | chr3.4:99889944-99889963 | MS.gene063118:intron | 35.0% | |
| TTAGGAGCTGAAATAACATG+CGG | + | chr3.4:99889734-99889753 | MS.gene063118:CDS | 35.0% | |
| TTCAAGCTTAGATCAGTTTC+TGG | - | chr3.4:99889611-99889630 | None:intergenic | 35.0% | |
| TTGTGCAGAACAAAACAAAG+AGG | - | chr3.4:99890068-99890087 | None:intergenic | 35.0% | |
| ! | AAGGAAAGGTGTGAAGTTAA+TGG | + | chr3.4:99888508-99888527 | MS.gene063118:CDS | 35.0% |
| ! | AATGTGCACAAATCTTTTGG+AGG | + | chr3.4:99889766-99889785 | MS.gene063118:CDS | 35.0% |
| ! | ACAGTTTTCTTGATAAGGAC+AGG | - | chr3.4:99888244-99888263 | None:intergenic | 35.0% |
| ! | CCTTTGATGTAAAGAAGTGT+CGG | + | chr3.4:99888797-99888816 | MS.gene063118:intron | 35.0% |
| ! | CTCATCTTCACAATTTTCTG+CGG | - | chr3.4:99889380-99889399 | None:intergenic | 35.0% |
| ! | CTGCGGTTTTTCTTTTCTTT+TGG | - | chr3.4:99889363-99889382 | None:intergenic | 35.0% |
| ! | GCGGTTTTTCTTTTCTTTTG+GGG | - | chr3.4:99889361-99889380 | None:intergenic | 35.0% |
| ! | TAATTTACAAGGGGGGTTTT+TGG | + | chr3.4:99888344-99888363 | MS.gene063118:intron | 35.0% |
| ! | TAGCAATTATGAATTCGGTG+AGG | - | chr3.4:99888674-99888693 | None:intergenic | 35.0% |
| ! | TTGAGTTTGGCATCAGTTTT+GGG | - | chr3.4:99888583-99888602 | None:intergenic | 35.0% |
| !! | ATTTGGTGTACAAATCTGTG+GGG | + | chr3.4:99890231-99890250 | MS.gene063118:CDS | 35.0% |
| !! | TTTCTTTTCTTTTGGGGACA+AGG | - | chr3.4:99889355-99889374 | None:intergenic | 35.0% |
| !! | TTTGAGTTTGGCATCAGTTT+TGG | - | chr3.4:99888584-99888603 | None:intergenic | 35.0% |
| !!! | ACCACCATCTTTGTTTTTGA+CGG | - | chr3.4:99889131-99889150 | None:intergenic | 35.0% |
| !!! | GTCCTTTTCTGAAATCTGAA+GGG | + | chr3.4:99888410-99888429 | MS.gene063118:CDS | 35.0% |
| !!! | TCCTTTTCTGAAATCTGAAG+GGG | + | chr3.4:99888411-99888430 | MS.gene063118:CDS | 35.0% |
| !!! | TGTCCTTTTCTGAAATCTGA+AGG | + | chr3.4:99888409-99888428 | MS.gene063118:CDS | 35.0% |
| AAAACAAAGAGGATGGGAGA+AGG | - | chr3.4:99890057-99890076 | None:intergenic | 40.0% | |
| AAACACAGACTTGTCGATAG+TGG | + | chr3.4:99888696-99888715 | MS.gene063118:intron | 40.0% | |
| AACTTAGAATCTGAGTCAGC+AGG | - | chr3.4:99889268-99889287 | None:intergenic | 40.0% | |
| AATAGGGTCAAGCTTCAGAA+TGG | + | chr3.4:99890176-99890195 | MS.gene063118:intron | 40.0% | |
| ACTCAAAACTCTTGGTCTCT+TGG | + | chr3.4:99888597-99888616 | MS.gene063118:CDS | 40.0% | |
| ACTTGGCAATGTTTGGACAA+AGG | - | chr3.4:99888206-99888225 | None:intergenic | 40.0% | |
| AGATTTCCAACAGTGGTCAA+GGG | - | chr3.4:99889689-99889708 | None:intergenic | 40.0% | |
| AGTGCAGAAATTGGCTGATT+TGG | + | chr3.4:99888378-99888397 | MS.gene063118:intron | 40.0% | |
| AGTGTTGTAGAAGTAGCTTC+AGG | + | chr3.4:99890403-99890422 | MS.gene063118:CDS | 40.0% | |
| ATAAGATCTGAATCAGAGGC+AGG | + | chr3.4:99889569-99889588 | MS.gene063118:CDS | 40.0% | |
| ATAGGGTCAAGCTTCAGAAT+GGG | + | chr3.4:99890177-99890196 | MS.gene063118:intron | 40.0% | |
| ATGCATAGCTCCTGTTAAGA+AGG | + | chr3.4:99887954-99887973 | MS.gene063118:CDS | 40.0% | |
| ATGTGGGAATTGCCTGAAAT+TGG | - | chr3.4:99889881-99889900 | None:intergenic | 40.0% | |
| CAAGCTTAGATCAGTTTCTG+GGG | - | chr3.4:99889609-99889628 | None:intergenic | 40.0% | |
| CCGACACTTCTTTACATCAA+AGG | - | chr3.4:99888800-99888819 | None:intergenic | 40.0% | |
| CGAATGAAGTCCTTCTTAAC+AGG | - | chr3.4:99887967-99887986 | None:intergenic | 40.0% | |
| CGCAGAAAATTGTGAAGATG+AGG | + | chr3.4:99889378-99889397 | MS.gene063118:CDS | 40.0% | |
| CTGCATAAGATCTGAATCAG+AGG | + | chr3.4:99889565-99889584 | MS.gene063118:CDS | 40.0% | |
| GACTTGGAAAACAAAGACGA+TGG | + | chr3.4:99889199-99889218 | MS.gene063118:CDS | 40.0% | |
| GATGCCAAACTCAAAACTCT+TGG | + | chr3.4:99888589-99888608 | MS.gene063118:CDS | 40.0% | |
| GCAGAACAAAACAAAGAGGA+TGG | - | chr3.4:99890064-99890083 | None:intergenic | 40.0% | |
| GCGTTTAGATTTCTTCTCCT+TGG | - | chr3.4:99888055-99888074 | None:intergenic | 40.0% | |
| GGAATTAACATCACCTGACT+TGG | - | chr3.4:99888223-99888242 | None:intergenic | 40.0% | |
| GGCATAACATGAACAACAAC+GGG | - | chr3.4:99888642-99888661 | None:intergenic | 40.0% | |
| GGTTTCAACGTTCAAACCTA+TGG | - | chr3.4:99889963-99889982 | None:intergenic | 40.0% | |
| GTAGTAGAAGTAGTTCGATC+GGG | - | chr3.4:99887997-99888016 | None:intergenic | 40.0% | |
| TCACTCTGTATGTATTCTGC+AGG | + | chr3.4:99888161-99888180 | MS.gene063118:intron | 40.0% | |
| TCGATGATGAGTGCAGAAAT+TGG | + | chr3.4:99888369-99888388 | MS.gene063118:intron | 40.0% | |
| TGATGACAATGGTTCTTGTG+CGG | + | chr3.4:99889168-99889187 | MS.gene063118:CDS | 40.0% | |
| TGTGTTTCGTCTGATGACAA+TGG | + | chr3.4:99889157-99889176 | MS.gene063118:CDS | 40.0% | |
| TTCAACGTTCAAACCTATGG+AGG | - | chr3.4:99889960-99889979 | None:intergenic | 40.0% | |
| ! | AATTCGGTGAGGAAAATGAG+AGG | - | chr3.4:99888663-99888682 | None:intergenic | 40.0% |
| ! | ACAACACTTTTCATGCGCAT+TGG | - | chr3.4:99890391-99890410 | None:intergenic | 40.0% |
| ! | ATTGTTGTGAATAAGGGTGC+TGG | + | chr3.4:99890346-99890365 | MS.gene063118:CDS | 40.0% |
| ! | CGGAGAGTTTGCAAAGTATT+AGG | + | chr3.4:99889716-99889735 | MS.gene063118:CDS | 40.0% |
| ! | CTTTACATCAAAGGCATGTC+CGG | - | chr3.4:99888791-99888810 | None:intergenic | 40.0% |
| ! | GGCAATGTGCACAAATCTTT+TGG | + | chr3.4:99889763-99889782 | MS.gene063118:CDS | 40.0% |
| ! | TGAGTTTGGCATCAGTTTTG+GGG | - | chr3.4:99888582-99888601 | None:intergenic | 40.0% |
| !! | CAGAAATTGGCTGATTTGGA+GGG | + | chr3.4:99888382-99888401 | MS.gene063118:intron | 40.0% |
| !! | CTTCTAACGGATTGAAGGAA+AGG | + | chr3.4:99888494-99888513 | MS.gene063118:CDS | 40.0% |
| !! | GAGTGTTGATGACCAAATTG+TGG | + | chr3.4:99889535-99889554 | MS.gene063118:CDS | 40.0% |
| !! | GTTGATGACCAAATTGTGGA+CGG | + | chr3.4:99889539-99889558 | MS.gene063118:CDS | 40.0% |
| !! | TTTTGGGGACAAGGTATATC+AGG | - | chr3.4:99889346-99889365 | None:intergenic | 40.0% |
| !!! | GAGACCAAGAGTTTTGAGTT+TGG | - | chr3.4:99888596-99888615 | None:intergenic | 40.0% |
| AAACGTGAACGTCTTCAGGT+AGG | + | chr3.4:99888081-99888100 | MS.gene063118:intron | 45.0% | |
| ACTCAAACGTGAACGTCTTC+AGG | + | chr3.4:99888077-99888096 | MS.gene063118:CDS | 45.0% | |
| ACTTTGCAAACTCTCCGGAA+AGG | - | chr3.4:99889713-99889732 | None:intergenic | 45.0% | |
| CAGGCAATTCCCACATAGTT+TGG | + | chr3.4:99889885-99889904 | MS.gene063118:intron | 45.0% | |
| CTGTTGGAAATCTCCCTTTC+CGG | + | chr3.4:99889696-99889715 | MS.gene063118:CDS | 45.0% | |
| CTTTGCAAACTCTCCGGAAA+GGG | - | chr3.4:99889712-99889731 | None:intergenic | 45.0% | |
| GAAAGGGAGATTTCCAACAG+TGG | - | chr3.4:99889696-99889715 | None:intergenic | 45.0% | |
| GAAGACGTTCACGTTTGAGT+TGG | - | chr3.4:99888077-99888096 | None:intergenic | 45.0% | |
| GAGATTTCCAACAGTGGTCA+AGG | - | chr3.4:99889690-99889709 | None:intergenic | 45.0% | |
| GATGAGGAGACGGAAAATGA+AGG | + | chr3.4:99889394-99889413 | MS.gene063118:CDS | 45.0% | |
| GCCCCTTCAGATTTCAGAAA+AGG | - | chr3.4:99888415-99888434 | None:intergenic | 45.0% | |
| GCCGTCAAAAACAAAGATGG+TGG | + | chr3.4:99889127-99889146 | MS.gene063118:CDS | 45.0% | |
| TCTTGCGATCAGTTGTTCGA+TGG | - | chr3.4:99887935-99887954 | None:intergenic | 45.0% | |
| TGTCCAAACATTGCCAAGTC+AGG | + | chr3.4:99888207-99888226 | MS.gene063118:CDS | 45.0% | |
| TTGTGCGGTTACATCTGACT+TGG | + | chr3.4:99889183-99889202 | MS.gene063118:CDS | 45.0% | |
| TTTCAAAACTCTGCTGGGAC+TGG | + | chr3.4:99890017-99890036 | MS.gene063118:intron | 45.0% | |
| TTTCTTCTCCTTGGCGAGAA+CGG | - | chr3.4:99888046-99888065 | None:intergenic | 45.0% | |
| !! | GCAGAAATTGGCTGATTTGG+AGG | + | chr3.4:99888381-99888400 | MS.gene063118:intron | 45.0% |
| !! | TCACCTGACTTGGCAATGTT+TGG | - | chr3.4:99888213-99888232 | None:intergenic | 45.0% |
| !!! | AAATTTTATTACTAAATTAT+TGG | - | chr3.4:99889998-99890017 | None:intergenic | 5.0% |
| AGAACGGGAGGTTTGTCGTT+AGG | - | chr3.4:99888030-99888049 | None:intergenic | 50.0% | |
| AGCCGTCATCATCAGACTGA+TGG | - | chr3.4:99889234-99889253 | None:intergenic | 50.0% | |
| AGGTTTGTCGTTAGGAGCAG+AGG | - | chr3.4:99888022-99888041 | None:intergenic | 50.0% | |
| CATTGTCGTGTCAGCGTTTC+GGG | + | chr3.4:99888763-99888782 | MS.gene063118:intron | 50.0% | |
| CCATTGTCGTGTCAGCGTTT+CGG | + | chr3.4:99888762-99888781 | MS.gene063118:intron | 50.0% | |
| GGGCACATCCAGATACTGTA+GGG | + | chr3.4:99890251-99890270 | MS.gene063118:CDS | 50.0% | |
| GTAGAAGTAGTTCGATCGGG+AGG | - | chr3.4:99887994-99888013 | None:intergenic | 50.0% | |
| TGCAGCTTCCGTCCACAATT+TGG | - | chr3.4:99889550-99889569 | None:intergenic | 50.0% | |
| TTCTTCTCCTTGGCGAGAAC+GGG | - | chr3.4:99888045-99888064 | None:intergenic | 50.0% | |
| ! | CGCCATCAGTCTGATGATGA+CGG | + | chr3.4:99889229-99889248 | MS.gene063118:CDS | 50.0% |
| !! | CTGATGATGACGGCTCTTGT+GGG | + | chr3.4:99889239-99889258 | MS.gene063118:CDS | 50.0% |
| !! | TCTGATGATGACGGCTCTTG+TGG | + | chr3.4:99889238-99889257 | MS.gene063118:CDS | 50.0% |
| !! | TGATGATGACGGCTCTTGTG+GGG | + | chr3.4:99889240-99889259 | MS.gene063118:CDS | 50.0% |
| ACAGCTCGCCCTACAGTATC+TGG | - | chr3.4:99890262-99890281 | None:intergenic | 55.0% | |
| AGGGTGGCGAGGATGATTCT+GGG | + | chr3.4:99887881-99887900 | MS.gene063118:CDS | 55.0% | |
| CCGAAACGCTGACACGACAA+TGG | - | chr3.4:99888765-99888784 | None:intergenic | 55.0% | |
| CTGAAGGGGCTTGCCCTTAT+GGG | + | chr3.4:99888425-99888444 | MS.gene063118:CDS | 55.0% | |
| CTTGCACCCTTGACCACTGT+TGG | + | chr3.4:99889680-99889699 | MS.gene063118:CDS | 55.0% | |
| GAAGTAGTTCGATCGGGAGG+AGG | - | chr3.4:99887991-99888010 | None:intergenic | 55.0% | |
| GGGGCACATCCAGATACTGT+AGG | + | chr3.4:99890250-99890269 | MS.gene063118:CDS | 55.0% | |
| TCTGAAGGGGCTTGCCCTTA+TGG | + | chr3.4:99888424-99888443 | MS.gene063118:CDS | 55.0% | |
| ! | GGCGAGGATGATTCTGGGAA+GGG | + | chr3.4:99887886-99887905 | MS.gene063118:CDS | 55.0% |
| ! | TGGCGAGGATGATTCTGGGA+AGG | + | chr3.4:99887885-99887904 | MS.gene063118:CDS | 55.0% |
| CAAACCTCCCGTTCTCGCCA+AGG | + | chr3.4:99888035-99888054 | MS.gene063118:CDS | 60.0% | |
| GAGGGTGGCGAGGATGATTC+TGG | + | chr3.4:99887880-99887899 | MS.gene063118:CDS | 60.0% | |
| TTCTCCTTGGCGAGAACGGG+AGG | - | chr3.4:99888042-99888061 | None:intergenic | 60.0% | |
| CGTGTCAGCGTTTCGGGCAC+CGG | + | chr3.4:99888769-99888788 | MS.gene063118:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 99887877 | 99890453 | 99887877 | ID=MS.gene063118 |
| chr3.4 | mRNA | 99887877 | 99890453 | 99887877 | ID=MS.gene063118.t1;Parent=MS.gene063118 |
| chr3.4 | exon | 99887877 | 99888098 | 99887877 | ID=MS.gene063118.t1.exon1;Parent=MS.gene063118.t1 |
| chr3.4 | CDS | 99887877 | 99888098 | 99887877 | ID=cds.MS.gene063118.t1;Parent=MS.gene063118.t1 |
| chr3.4 | exon | 99888183 | 99888299 | 99888183 | ID=MS.gene063118.t1.exon2;Parent=MS.gene063118.t1 |
| chr3.4 | CDS | 99888183 | 99888299 | 99888183 | ID=cds.MS.gene063118.t1;Parent=MS.gene063118.t1 |
| chr3.4 | exon | 99888385 | 99888618 | 99888385 | ID=MS.gene063118.t1.exon3;Parent=MS.gene063118.t1 |
| chr3.4 | CDS | 99888385 | 99888618 | 99888385 | ID=cds.MS.gene063118.t1;Parent=MS.gene063118.t1 |
| chr3.4 | exon | 99889109 | 99889415 | 99889109 | ID=MS.gene063118.t1.exon4;Parent=MS.gene063118.t1 |
| chr3.4 | CDS | 99889109 | 99889415 | 99889109 | ID=cds.MS.gene063118.t1;Parent=MS.gene063118.t1 |
| chr3.4 | exon | 99889531 | 99889787 | 99889531 | ID=MS.gene063118.t1.exon5;Parent=MS.gene063118.t1 |
| chr3.4 | CDS | 99889531 | 99889787 | 99889531 | ID=cds.MS.gene063118.t1;Parent=MS.gene063118.t1 |
| chr3.4 | exon | 99890181 | 99890453 | 99890181 | ID=MS.gene063118.t1.exon6;Parent=MS.gene063118.t1 |
| chr3.4 | CDS | 99890181 | 99890453 | 99890181 | ID=cds.MS.gene063118.t1;Parent=MS.gene063118.t1 |
| Gene Sequence |
| Protein sequence |
