AlfalfaGEDB | MS.gene063679

M. sativa cultivar XinJiangDaYe / MS.gene063679

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF12796.10 PF13606.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063679.t1	AES95221.2	76.5	388	49	3	1	358	105	480	2.80E-97	365.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063679.t1	Q05753	47.5	223	101	4	1	220	100	309	2.7e-48	194.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063679.t1	G7JYS4	76.5	388	49	3	1	358	105	480	2.1e-97	365.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050426	MS.gene063679	-0.827224	1.76E-54	-1.69E-46
MS.gene052011	MS.gene063679	-0.801494	8.77E-49	-1.69E-46
MS.gene052134	MS.gene063679	0.825575	4.35E-54	-1.69E-46
MS.gene052135	MS.gene063679	0.826373	2.81E-54	-1.69E-46
MS.gene052414	MS.gene063679	0.830855	2.32E-55	-1.69E-46
MS.gene052469	MS.gene063679	0.835245	1.88E-56	-1.69E-46
MS.gene053330	MS.gene063679	0.807016	6.21E-50	-1.69E-46
MS.gene055539	MS.gene063679	0.8493	3.53E-60	-1.69E-46
MS.gene059420	MS.gene063679	0.80578	1.13E-49	-1.69E-46
MS.gene059717	MS.gene063679	0.807665	4.52E-50	-1.69E-46

Showing 1 to 10 of 10 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063679.t1	MTR_5g023090	84.085	377	40	3	1	358	105	480	0.0	627
MS.gene063679.t1	MTR_5g022050	72.423	359	68	4	1	358	100	428	1.24e-175	495
MS.gene063679.t1	MTR_5g022050	72.862	269	60	3	1	268	110	366	6.56e-130	377
MS.gene063679.t1	MTR_2g048680	44.865	185	100	2	147	330	124	307	2.04e-51	174
MS.gene063679.t1	MTR_2g048680	41.379	203	117	2	128	330	27	227	1.74e-49	166
MS.gene063679.t1	MTR_5g043640	31.655	139	94	1	169	307	89	226	4.89e-15	74.3
MS.gene063679.t1	MTR_5g043640	32.353	136	90	1	174	307	58	193	1.75e-14	72.8
MS.gene063679.t1	MTR_5g026800	30.657	137	95	0	174	310	15	151	3.04e-14	72.4
MS.gene063679.t1	MTR_5g077770	37.179	156	89	4	173	327	591	738	2.49e-12	68.9
MS.gene063679.t1	MTR_2g096760	30.675	163	95	4	169	314	45	206	6.86e-12	67.0

Showing 1 to 10 of 12 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063679.t1	AT5G66055	56.156	333	130	4	1	330	100	419	3.09e-124	365
MS.gene063679.t1	AT5G66055	52.381	273	114	4	1	270	100	359	5.57e-88	270
MS.gene063679.t1	AT5G40160	46.277	188	99	2	147	333	128	314	3.27e-50	171
MS.gene063679.t1	AT5G40160	46.154	156	82	2	147	301	128	282	3.60e-40	144
MS.gene063679.t1	AT5G53470	36.000	100	62	1	213	310	225	324	2.19e-13	70.9
MS.gene063679.t1	AT4G27780	40.506	79	47	0	232	310	261	339	1.23e-12	68.9
MS.gene063679.t1	AT2G14255	32.450	151	98	3	162	309	83	232	7.16e-12	67.0
MS.gene063679.t1	AT2G25600	33.803	142	91	2	174	315	581	719	1.15e-11	67.0
MS.gene063679.t1	AT5G02620	28.251	223	148	8	154	369	108	325	3.97e-11	64.7
MS.gene063679.t1	AT5G02620	28.251	223	148	8	154	369	108	325	3.97e-11	64.7

Showing 1 to 10 of 13 entries

Previous1 2Next

Find 68 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGGTTGGTTCCTTTG+AGG	0.431464	5.3:+13458565	MS.gene063679:CDS
AACTTGATTAACTCGTCTCT+CGG	0.494680	5.3:-13462652	None:intergenic
AAGAAGGTTGGTTCCTTTGA+GGG	0.419078	5.3:+13458566	MS.gene063679:CDS
AAGTTATGAAGCTGAAAAGA+AGG	0.520767	5.3:+13458550	MS.gene063679:CDS
AATCCTAGGTGGGCTGTTTA+TGG	0.193086	5.3:+13458741	MS.gene063679:CDS
ACAAGAGTGCTTTAATTGCT+CGG	0.449055	5.3:-13461361	None:intergenic
ACAATGTGGATATAAATCTT+CGG	0.421567	5.3:+13461387	MS.gene063679:CDS
ACTTGATTAACTCGTCTCTC+GGG	0.510011	5.3:-13462651	None:intergenic
AGAGGCTAGGAATCCTAGGT+GGG	0.610369	5.3:+13458731	MS.gene063679:CDS
AGAGTTTCTCACGAGAAGAT+GGG	0.560384	5.3:-13460781	None:intergenic

Showing 1 to 10 of 68 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGTCAATACATCACCA+AGG	-	chr5.3:13459367-13459386	None:intergenic	30.0%
AAATTCATTTGCTCTGTCTT+AGG	+	chr5.3:13461485-13461504	MS.gene063679:intron	30.0%
AAGAAGGAAAAAGAAGTAGA+TGG	+	chr5.3:13458690-13458709	MS.gene063679:CDS	30.0%
AAGTTATGAAGCTGAAAAGA+AGG	+	chr5.3:13458550-13458569	MS.gene063679:CDS	30.0%
ACACAGAAGATTATAATGTG+TGG	+	chr5.3:13460663-13460682	MS.gene063679:intron	30.0%
AGAAGGAAAAAGAAGTAGAT+GGG	+	chr5.3:13458691-13458710	MS.gene063679:CDS	30.0%
AGCGATACAGATAAATATAC+CGG	-	chr5.3:13459138-13459157	None:intergenic	30.0%
CAAACAATGAGAACCAAAAT+CGG	-	chr5.3:13460066-13460085	None:intergenic	30.0%
CAATGTGGATATAAATCTTC+GGG	+	chr5.3:13461388-13461407	MS.gene063679:CDS	30.0%
CGTTGTTATCATTACATCTT+AGG	+	chr5.3:13460950-13460969	MS.gene063679:intron	30.0%

Showing 1 to 10 of 253 entries

Previous1 2 3 4 5…26Next

Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	13458408	13462767	13458408	ID=MS.gene063679
chr5.3	mRNA	13458408	13462767	13458408	ID=MS.gene063679.t1;Parent=MS.gene063679
chr5.3	exon	13458408	13458834	13458408	ID=MS.gene063679.t1.exon1;Parent=MS.gene063679.t1
chr5.3	CDS	13458408	13458834	13458408	ID=cds.MS.gene063679.t1;Parent=MS.gene063679.t1
chr5.3	exon	13460148	13460224	13460148	ID=MS.gene063679.t1.exon2;Parent=MS.gene063679.t1
chr5.3	CDS	13460148	13460224	13460148	ID=cds.MS.gene063679.t1;Parent=MS.gene063679.t1
chr5.3	exon	13460541	13460642	13460541	ID=MS.gene063679.t1.exon3;Parent=MS.gene063679.t1
chr5.3	CDS	13460541	13460642	13460541	ID=cds.MS.gene063679.t1;Parent=MS.gene063679.t1
chr5.3	exon	13460729	13460827	13460729	ID=MS.gene063679.t1.exon4;Parent=MS.gene063679.t1
chr5.3	CDS	13460729	13460827	13460729	ID=cds.MS.gene063679.t1;Parent=MS.gene063679.t1
chr5.3	exon	13461317	13461415	13461317	ID=MS.gene063679.t1.exon5;Parent=MS.gene063679.t1
chr5.3	CDS	13461317	13461415	13461317	ID=cds.MS.gene063679.t1;Parent=MS.gene063679.t1
chr5.3	exon	13461507	13461605	13461507	ID=MS.gene063679.t1.exon6;Parent=MS.gene063679.t1
chr5.3	CDS	13461507	13461605	13461507	ID=cds.MS.gene063679.t1;Parent=MS.gene063679.t1
chr5.3	exon	13462552	13462767	13462552	ID=MS.gene063679.t1.exon7;Parent=MS.gene063679.t1
chr5.3	CDS	13462552	13462767	13462552	ID=cds.MS.gene063679.t1;Parent=MS.gene063679.t1

Gene Sequence

>MS.gene063679

ATGAAGTCCGATAATCTTGTTCCTGATAAATGGAAACAAGTTCAAGCAGAGATAAACATATCGAAGAAAGAAGTTCAAGCAGAGATAAACATAACAAAGAAAGAACGGCCTAAGAAAGCTCAAGAGATTGAGTTTAATAGTAAAGTTATGAAGCTGAAAAGAAGGTTGGTTCCTTTGAGGGATATGGATTTGAATGAGTATAAAGCTTATAAAGAAACTAAATTGGCTCAGCTGACGCCTTTGGTTCTTGATAAGGTTCCGAGTTTTTGTTTTGCTGAGAAAAAGAAGGAAAAAGAAGTAGATGGGTTGAGTGAAGAGAGGGTAGAGGCTAGGAATCCTAGGTGGGCTGTTTATGGGAAAGGGTTGGAGGATGTTAAGGAGTTTTTGAATAGTGAGAGTTATGACTCTGCTGCTAAGAAAATTGGAGGTAATTTGTATTTACAATCTGTTTTGGTTTTATTTTTGTTAATGTACGTTGTCGAGGATTATTACGACCTATGTAATAACTTCTAGTCTCTAGATTGAAAGCGTGTCAGGTGCACCTGACACGTGATGGTGTTAGACACAAACACACGTAGTTACGTTTGGTATATATGTGTCGGTGTCGTATCCGATGCATGTGTCTGTGTTGCTGCTAATTAGATTATTGTGTTGGGTGTCCGACACATATTGGTGTCAGACACATACACATGTAGTTACCTTTGGTATCTACATGTCAGTGTCATATCCGGTATATTTATCTGTATCGCTGCTTCATATATTATTGTTTAGGGTGCCGTTCATGTGCCTGCCAAGTATTTGTGTCAGACACAAGCACATGTGGTTACTTTTGGTTTCTATGTGTCAATGTCATATCCGGTATATGCATCTGTGTTGCTGCTTCATAGATTATGATTTCTGCTTGTTAGATAACTTTGGTTCTTTGCAACATGCTCTGATGTAGTGAAAATCAACTTCCTTGGTGATGTATTGACATTTTAAAAAATAAGTGTGGTTTGCATTTGCTTTTAATTTATGGGAGCTTGTTAGTTAAAACAAATTTATGGGCAAAAATGCTTATAAGTTTACCGGCGCTTATTGAAAAGTTAAATGAGAGAACTTATGAAAAAGTTGAGATATAGAGGCTAGTTTTAATTTATATGAGAATCTATTGTATTAAAAACTCACGGTTATTGTGAGATTTTGTTTTAGTACTCCCTCCGTCCCTATATCTAAGCACCCATTTGATTTTATTTTTGTCCCTAAATGTAAACCCCTTTTCAAATTACTAGATACATTTATTATTTTTTTCCTAAACATACCCCTAATTAATACTACTATCTTGTCTTGAAATATGAAAAGTCAAATTTAATACACATACAAACAAAGGACAATTTCGTAATATTAACACACAAAACAGACACATTAATTACACTGACAACTTTTCTTAAGAAATATGAAAAAAGCAATGGGTGCCTACATTAAGGGACGGAGGGAGTATTTCTCTTTAGATAAGTGTTTTTGGAGAGGTTTATCCAAAATGGCTCTTAAGTTGGTGCTGCTTCACAACCTTTGGTACTTAATGGATGATGGCAACATAAACAAAGAAATTTGATTGCGATAAAATGGATCATTTTATTCATTGGCGGTTGAGTTCAGGAAGATCTTCATTTTATCCGATTTTGGTTCTCATTGTTTGCATATATATGGTTTTTAAATGTTGGCATTTTGGTTTTCATTCTTTCATACTTGCCTGAATAGGTCTTCCTTTTTTGTTTACCTGGGAAGAGAGGGATTTGTTGAAAAAGAAAACGCCAGACTTGACAGTTGCTACTTCAGTAAGTATTCCATGTCTATGAGCAATGACTGATATTTCATCATCGTCATCATTATATATTGAACTGTTATTGGAAAAGAAGAACTCTCTCGTTTTCCTTCGTTTTGATGTTGAAGTAATTTTTTGTTCCACCGTTGATGTTGAGTAATCTTAGTAGCTGTTGGTATTGTAGTTGTTGAGTAATCTTATTAGTTGCATTTTTTTCAATGTTGGAATCATGATAGAAGTGTAGGAGGAAAGGGTATTCACTTGTTTGTTGCCTTTGGTTAATAATCTCTATATTTATGTTTTTAATGGCTAACACTCATTATTTGTAGGATAAATGGCTTCCTTTGCACACTTTTGCTGCGAGTGGAGAATCTTTCCTTTTAGATACTTTGTTGCAGCATGATGTTGTTGATATTAATGCTATGGATAAGGTACATGAATACTAATTTCTACACAGAAGATTATAATGTGTGGAATCCTCTATTTAAACTATTGTGATTTGTTTTACTTTTTCAAGGATGGTTTGAGCGCTCTTTACAAAGCAATAATTGGAAGAAAGCTTGCCATAACCCATCTTCTCGTGAGAAACTCTGCGAATCCGTTTGTGCAAGATAATGTGAGTGAAAAATTGTGTGTTGTGCTGTCATAGTAGCATTCGTAAGCCTTTATCTGTTGATTTTCTTACTGCAATAGTGCAATTTATATTTTGTGCTCTTCCTTCCCTCACTGGAAATTCATCGTTGTTATCATTACATCTTAGGCGCTTATAGCATAAACTCTTGTCATATAAGTGTTTATGCATACAATTTTTTTAGAACAAAAGATAAAATCAAATCAAATTGTTGCATATAAGCTATAAACTGTTTTCATTAGCTATTCTGGGAGCTTATCGAAATATGTTGAAAACAACTTATGGACATGTTTATAAGCTGTTTCCATAAGCTCTTCTGAATAGTCTCACGAGTGTTTATGCTAATATATAAGCTCAAATAAGTCAATCCAAACATGCCCTTAATCTATTAACATATAGTTATTATATCCTTAGTTAGCTGTTGGTATCCTGATATTCCATGCATTTGCTTTGTTGTTTATGTGCTGGAAACAGGATGGGGCCACCTTGATGCACTATGCTGTACAAACAGCGTCTGCCCGAGCAATTAAAGCACTCTTGTTTTACAATGTGGATATAAATCTTCGGGACAATGTATGATCAATTTTTCCAATACTTGGCTTATCTACCTCTTATTCTTTTGTGGACCGATGTTTGAGAACAAAATTCATTTGCTCTGTCTTAGGATGGCTGGACACCATTACATCTTGCTGTTCAGACTCAGAGACCTGATATAGTGGAGCTTCTGCTGATTAAAGGCGCTGATCGGACATTAAAAAACAAGGTAATTGTCTATTGATTTCCTATATTAATCTATCAATTTCACTGCTATTTAGCTATTTAGCAACACAAACATTCATCATGACCCTGGCACTTTGACATCGATAATAATTTACAAAATAGAAGCGGGCTGAATATAGATGCTTTTAATGGGTCATTGGTAAAATATCAGTTGTCACTGGTATTTACCTACGAAGCACTGACACTGACATTCAACGTTACACTGACACGTACACATTGATAATAATTTAGAAAATAGAAGTGATTATATGTAACCTCATGTATTGGTGTCATGTTGGACATCATACATGCATTCAATCTGAAGTGTTGGTGCAACACAAGTATTTAGAAGATTTCTCCCGTCCTTAAGAACTAGTTATCTGATTTAAATGAAAGGCTAAGAAATTGAGATACTTACTCGAGATTCTCCCTTTAAACAGGGACGTCTTTCCAAAGTTGTCAGAGTCATTAAAAACCTATCAGTTGAAGAAAAACTTTCAATTGTTATTTAGGAATCATTAGACTTTGCCAATCACTTGCTTCTTTGTTGAACTGTCACATATCTAGTCAGTAGTCCTATGCTTGGATCAAAAAATTAATAGTTTCATTAAAATATTGATCTTTAATAGACCGTTATGCGTCGATTAGCCAACATCAGTCCTCACCTAGCAGAAGTGACAAGGCTTGATTGAATTTGTTTTATTTAGAGCCGTGATTGATGAATATTTTGTTTTTTTTTTTGTTTAAAAGCTCTCTAGAGTCTACTAGAGTATTGTTCAACTCGGTGTCAATTTTTAATATGCATATCATAATATTTTGTCTGTGGTTTATAAAATTAGATAAACTCTTGAACAATGATTGATTGTTCAAAATATGTTGTCTAGCAGATTAATACTGGCCATTTCTTTTACATTGATATTTGAATTCAATTTATCTCTTGTTTGTCTCAGGATGGTTTAACTCCACTCGACCTTTGCCTTTACTCTGGTCAAAATGTCAGAACATATGAGTTAATCAAGTTGTTGAAACAGCTGCCTTATATAGACGCGCCCGAGAGACGAGTTAATCAAGTTGTTGAAACAGCCTTATATAGACGCGCCCGACGGAAGTGGATAAGAAAAAATAAAACTTTTGAAGATCTGGACCAACAAGGAAGTGAAGAATAG

Protein sequence

>MS.gene063679.t1

MKSDNLVPDKWKQVQAEINISKKEVQAEINITKKERPKKAQEIEFNSKVMKLKRRLVPLRDMDLNEYKAYKETKLAQLTPLVLDKVPSFCFAEKKKEKEVDGLSEERVEARNPRWAVYGKGLEDVKEFLNSESYDSAAKKIGGLPFLFTWEERDLLKKKTPDLTVATSDKWLPLHTFAASGESFLLDTLLQHDVVDINAMDKDGLSALYKAIIGRKLAITHLLVRNSANPFVQDNDGATLMHYAVQTASARAIKALLFYNVDINLRDNDGWTPLHLAVQTQRPDIVELLLIKGADRTLKNKDGLTPLDLCLYSGQNVRTYELIKLLKQLPYIDAPERRVNQVVETALYRRARRKWIRKNKTFEDLDQQGSEE