Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06426.t1 | XP_003602583.1 | 98.6 | 566 | 8 | 0 | 1 | 566 | 72 | 637 | 0.00E+00 | 1186.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06426.t1 | Q9LSB1 | 71.1 | 570 | 155 | 3 | 3 | 566 | 89 | 654 | 1.2e-252 | 873.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06426.t1 | G7JBH4 | 98.6 | 566 | 8 | 0 | 1 | 566 | 72 | 637 | 0.0e+00 | 1186.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049302 | MS.gene06426 | 0.976571 | 4.42E-142 | -1.69E-46 |
MS.gene05017 | MS.gene06426 | 0.805934 | 1.05E-49 | -1.69E-46 |
MS.gene050649 | MS.gene06426 | 0.805588 | 1.24E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene06426 | MS.gene32326 | PPI |
MS.gene06426 | MS.gene054153 | PPI |
MS.gene31842 | MS.gene06426 | PPI |
MS.gene026687 | MS.gene06426 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06426.t1 | MTR_3g095910 | 98.587 | 566 | 8 | 0 | 1 | 566 | 72 | 637 | 0.0 | 1173 |
MS.gene06426.t1 | MTR_1g029130 | 69.217 | 575 | 167 | 3 | 2 | 566 | 53 | 627 | 0.0 | 842 |
MS.gene06426.t1 | MTR_1g019540 | 48.247 | 485 | 228 | 9 | 57 | 522 | 55 | 535 | 3.02e-164 | 478 |
MS.gene06426.t1 | MTR_1g019540 | 48.247 | 485 | 228 | 9 | 57 | 522 | 108 | 588 | 1.79e-163 | 478 |
MS.gene06426.t1 | MTR_1g019530 | 45.582 | 498 | 253 | 9 | 39 | 522 | 91 | 584 | 5.40e-150 | 444 |
MS.gene06426.t1 | MTR_1g082880 | 44.726 | 474 | 221 | 8 | 80 | 525 | 91 | 551 | 4.90e-139 | 414 |
MS.gene06426.t1 | MTR_7g113610 | 40.381 | 525 | 273 | 10 | 33 | 528 | 48 | 561 | 3.31e-137 | 410 |
MS.gene06426.t1 | MTR_1g080460 | 35.802 | 162 | 103 | 1 | 235 | 396 | 27 | 187 | 6.41e-28 | 118 |
MS.gene06426.t1 | MTR_7g115460 | 35.119 | 168 | 108 | 1 | 229 | 396 | 30 | 196 | 9.68e-28 | 117 |
MS.gene06426.t1 | MTR_7g109920 | 28.079 | 203 | 107 | 3 | 232 | 395 | 23 | 225 | 1.42e-17 | 83.6 |
MS.gene06426.t1 | MTR_7g109920 | 28.079 | 203 | 107 | 3 | 232 | 395 | 23 | 225 | 4.09e-17 | 83.2 |
MS.gene06426.t1 | MTR_1g084670 | 27.481 | 262 | 134 | 9 | 228 | 445 | 16 | 265 | 3.88e-16 | 80.1 |
MS.gene06426.t1 | MTR_1g084670 | 27.536 | 207 | 111 | 4 | 228 | 395 | 16 | 222 | 4.16e-16 | 79.0 |
MS.gene06426.t1 | MTR_1g084670 | 35.043 | 117 | 73 | 1 | 231 | 344 | 19 | 135 | 6.28e-16 | 77.8 |
MS.gene06426.t1 | MTR_4g132185 | 26.961 | 204 | 110 | 3 | 231 | 395 | 20 | 223 | 1.07e-15 | 78.6 |
MS.gene06426.t1 | MTR_5g012590 | 28.000 | 175 | 111 | 5 | 233 | 395 | 39 | 210 | 2.74e-14 | 75.9 |
MS.gene06426.t1 | MTR_7g111850 | 24.016 | 254 | 139 | 7 | 235 | 445 | 26 | 268 | 1.09e-12 | 69.7 |
MS.gene06426.t1 | MTR_4g100950 | 26.163 | 172 | 118 | 4 | 233 | 395 | 37 | 208 | 1.19e-12 | 70.5 |
MS.gene06426.t1 | MTR_1g084660 | 26.255 | 259 | 128 | 9 | 228 | 445 | 16 | 252 | 7.39e-12 | 67.0 |
MS.gene06426.t1 | MTR_1g084660 | 26.108 | 203 | 104 | 4 | 229 | 395 | 17 | 209 | 9.00e-12 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06426.t1 | AT3G18660 | 70.753 | 571 | 157 | 3 | 2 | 566 | 88 | 654 | 0.0 | 845 |
MS.gene06426.t1 | AT3G18660 | 70.228 | 571 | 156 | 3 | 2 | 566 | 88 | 650 | 0.0 | 837 |
MS.gene06426.t1 | AT3G18660 | 70.053 | 571 | 156 | 3 | 2 | 566 | 88 | 649 | 0.0 | 834 |
MS.gene06426.t1 | AT1G77130 | 69.674 | 521 | 154 | 4 | 26 | 542 | 74 | 594 | 0.0 | 773 |
MS.gene06426.t1 | AT4G33330 | 50.823 | 486 | 217 | 9 | 57 | 525 | 43 | 523 | 2.16e-171 | 496 |
MS.gene06426.t1 | AT4G33330 | 50.823 | 486 | 217 | 9 | 57 | 525 | 122 | 602 | 2.29e-170 | 496 |
MS.gene06426.t1 | AT4G33330 | 50.823 | 486 | 217 | 9 | 57 | 525 | 111 | 591 | 2.91e-170 | 496 |
MS.gene06426.t1 | AT4G33330 | 50.716 | 489 | 219 | 9 | 57 | 528 | 111 | 594 | 4.32e-170 | 496 |
MS.gene06426.t1 | AT1G08990 | 44.490 | 490 | 243 | 8 | 57 | 524 | 79 | 561 | 1.99e-142 | 424 |
MS.gene06426.t1 | AT1G54940 | 44.016 | 493 | 233 | 9 | 57 | 522 | 74 | 550 | 2.61e-137 | 410 |
MS.gene06426.t1 | AT4G33330 | 50.000 | 350 | 154 | 8 | 57 | 389 | 122 | 467 | 5.42e-108 | 332 |
MS.gene06426.t1 | AT5G18480 | 36.095 | 169 | 107 | 1 | 227 | 395 | 24 | 191 | 6.61e-30 | 124 |
MS.gene06426.t1 | AT1G60470 | 27.413 | 259 | 131 | 7 | 232 | 445 | 21 | 267 | 5.71e-18 | 85.9 |
MS.gene06426.t1 | AT1G60450 | 27.053 | 207 | 110 | 3 | 230 | 395 | 15 | 221 | 1.46e-16 | 81.6 |
MS.gene06426.t1 | AT1G56600 | 26.357 | 258 | 133 | 7 | 233 | 445 | 21 | 266 | 3.51e-16 | 80.5 |
MS.gene06426.t1 | AT1G09350 | 25.616 | 203 | 111 | 2 | 233 | 395 | 15 | 217 | 9.46e-16 | 79.3 |
MS.gene06426.t1 | AT4G26250 | 25.806 | 217 | 120 | 4 | 233 | 408 | 24 | 240 | 1.31e-15 | 79.0 |
MS.gene06426.t1 | AT5G30500 | 25.123 | 203 | 112 | 3 | 230 | 392 | 21 | 223 | 1.84e-14 | 73.9 |
MS.gene06426.t1 | AT5G30500 | 32.203 | 118 | 77 | 1 | 230 | 344 | 21 | 138 | 1.72e-13 | 72.4 |
MS.gene06426.t1 | AT2G47180 | 34.211 | 114 | 72 | 1 | 235 | 345 | 31 | 144 | 2.14e-13 | 72.0 |
MS.gene06426.t1 | AT2G35710 | 23.810 | 210 | 145 | 5 | 199 | 396 | 28 | 234 | 1.75e-11 | 66.2 |
MS.gene06426.t1 | AT4G16600 | 25.989 | 177 | 114 | 6 | 233 | 396 | 58 | 230 | 1.96e-11 | 67.0 |
MS.gene06426.t1 | AT5G23790 | 31.858 | 113 | 74 | 1 | 235 | 344 | 23 | 135 | 6.43e-11 | 64.3 |
MS.gene06426.t1 | AT2G35710 | 26.136 | 176 | 115 | 5 | 233 | 396 | 62 | 234 | 7.27e-11 | 65.1 |
Find 122 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTATGTGCTTCACTATTT+AGG | 0.175807 | 3.2:+80059199 | MS.gene06426:CDS |
GGTAATGAAGAGCACATAAA+TGG | 0.238422 | 3.2:-80058264 | None:intergenic |
TGAAGCCATGGTTATGCTTC+AGG | 0.255686 | 3.2:+80059224 | MS.gene06426:CDS |
TCTTCCTCATCAATCCATTC+TGG | 0.258883 | 3.2:-80058062 | None:intergenic |
TTGCACTAGAGCCTGTTAAA+TGG | 0.289954 | 3.2:-80057603 | None:intergenic |
TACAATACCACCCATTTAAC+AGG | 0.292959 | 3.2:+80057592 | MS.gene06426:CDS |
TCAGCTCATGTTTATGTTTG+TGG | 0.297365 | 3.2:+80058623 | MS.gene06426:CDS |
TTACCGGTAGCAGTGATTTC+CGG | 0.297466 | 3.2:-80058929 | None:intergenic |
CACCTGCAGCTTGCAGCTGC+TGG | 0.307481 | 3.2:+80058212 | MS.gene06426:CDS |
CCTTCTGCTTTGACTTCAAC+AGG | 0.309519 | 3.2:-80059360 | None:intergenic |
AATGGAATTACAGCAAATTC+AGG | 0.311462 | 3.2:+80058819 | MS.gene06426:CDS |
TCTCTCAAAACACTCAAGTT+TGG | 0.319713 | 3.2:-80058362 | None:intergenic |
ACGTCCAACTAGTTCTTTGC+AGG | 0.331846 | 3.2:-80058315 | None:intergenic |
GAAAAGCATGTTGCGGCATT+GGG | 0.356116 | 3.2:+80059498 | MS.gene06426:CDS |
TCTTTGCAGGTAAACAGATT+TGG | 0.366099 | 3.2:-80058302 | None:intergenic |
CAGGTAAACAGATTTGGTAT+TGG | 0.380674 | 3.2:-80058296 | None:intergenic |
ATCAAATGTAGATACTGATT+GGG | 0.390328 | 3.2:+80057863 | MS.gene06426:CDS |
TATCAAATGTAGATACTGAT+TGG | 0.406559 | 3.2:+80057862 | MS.gene06426:CDS |
TCAGGGACTATGATTGTAAC+TGG | 0.408838 | 3.2:+80059242 | MS.gene06426:CDS |
GGAAAAGCATGTTGCGGCAT+TGG | 0.412425 | 3.2:+80059497 | MS.gene06426:CDS |
TATGCTTTGTGCTGCAGCTA+TGG | 0.414347 | 3.2:-80058648 | None:intergenic |
CTTGTAAGAATGGAGCTAAC+TGG | 0.418026 | 3.2:+80058168 | MS.gene06426:CDS |
GGCATTGGGGAGAGAGTAAC+TGG | 0.422215 | 3.2:+80059512 | MS.gene06426:CDS |
ATTGTTGCATAGGCTTCTCT+TGG | 0.422994 | 3.2:-80058593 | None:intergenic |
GCAAAACTGTTGTAAAAGCT+TGG | 0.428800 | 3.2:-80059338 | None:intergenic |
CCCTTGGTCCCCTCCATTGT+AGG | 0.431386 | 3.2:-80059044 | None:intergenic |
TGGATATCACAGAAGCGGTT+TGG | 0.440256 | 3.2:+80058724 | MS.gene06426:CDS |
TGCACTAGAGCCTGTTAAAT+GGG | 0.445408 | 3.2:-80057602 | None:intergenic |
TGGGTGGTATTGTAAATCTC+TGG | 0.456085 | 3.2:-80057583 | None:intergenic |
CTTGGTAGAGAAGGGCAAAC+AGG | 0.457373 | 3.2:-80058098 | None:intergenic |
ACTATTTAGGTTTGAAGCCA+TGG | 0.459094 | 3.2:+80059212 | MS.gene06426:CDS |
GTAATGAAGAGCACATAAAT+GGG | 0.464788 | 3.2:-80058263 | None:intergenic |
ACAACACTGAGATATCTAAC+TGG | 0.465253 | 3.2:+80057958 | MS.gene06426:CDS |
TTCAAGAAGTTCATATGTCT+TGG | 0.466879 | 3.2:-80059103 | None:intergenic |
CAAATGAAAACCATGTTGTT+TGG | 0.468309 | 3.2:+80059160 | MS.gene06426:CDS |
GTCAAAGCAGAAGGCACAGT+TGG | 0.468496 | 3.2:+80059369 | MS.gene06426:CDS |
GGCCAGCAGCTGCAAGCTGC+AGG | 0.469350 | 3.2:-80058214 | None:intergenic |
CTACCAAGTCTCGGATCTCC+TGG | 0.470581 | 3.2:+80058113 | MS.gene06426:CDS |
AGCTGAAATGTGCAGTTTGA+TGG | 0.471355 | 3.2:-80058992 | None:intergenic |
CAAAACTGTTGTAAAAGCTT+GGG | 0.471650 | 3.2:-80059337 | None:intergenic |
TAGTGAAGCACATAGAGAAT+TGG | 0.472510 | 3.2:-80059193 | None:intergenic |
CAGTTAGCTCCATTCTTACA+AGG | 0.473497 | 3.2:-80058167 | None:intergenic |
GTTAAGCTACCTTGTAAGAA+TGG | 0.484639 | 3.2:+80058158 | MS.gene06426:CDS |
TGCCCTTCTCTACCAAGTCT+CGG | 0.486023 | 3.2:+80058104 | MS.gene06426:CDS |
GAAGCCATGGTTATGCTTCA+GGG | 0.489159 | 3.2:+80059225 | MS.gene06426:CDS |
GCACAAAGCATAAGAATGTC+AGG | 0.490485 | 3.2:+80058659 | MS.gene06426:CDS |
GATCCGAGACTTGGTAGAGA+AGG | 0.490655 | 3.2:-80058107 | None:intergenic |
TTTACCTGCAAAGAACTAGT+TGG | 0.491571 | 3.2:+80058311 | MS.gene06426:CDS |
GCAAGTTCACATGATCCAAC+TGG | 0.492733 | 3.2:-80058398 | None:intergenic |
TCTCATTTATATGATCCATC+AGG | 0.500815 | 3.2:-80059015 | None:intergenic |
ATGGTAACTGTGGGAGGTGT+TGG | 0.516236 | 3.2:-80059556 | None:intergenic |
ATATTTCATTCAAATACCCT+TGG | 0.517914 | 3.2:-80059060 | None:intergenic |
TTCCTTTGAATGAGGTAGCA+AGG | 0.523339 | 3.2:-80058235 | None:intergenic |
TGTAGTTTGCTATTTCCGCT+TGG | 0.524042 | 3.2:-80059405 | None:intergenic |
AAATATTTACATGGTGGCAC+AGG | 0.525162 | 3.2:+80059077 | MS.gene06426:CDS |
CTGCACATTTCAGCTCCTGA+TGG | 0.529440 | 3.2:+80059000 | MS.gene06426:CDS |
ATTACAGCAAATTCAGGTTG+TGG | 0.530607 | 3.2:+80058825 | MS.gene06426:CDS |
AACATACCTCTGCCTCTCAT+AGG | 0.531287 | 3.2:-80058425 | None:intergenic |
GGGAGTCTCTATATCCAGAA+TGG | 0.532222 | 3.2:+80058048 | MS.gene06426:CDS |
GTATAGATAATCTTTGTGAC+TGG | 0.535311 | 3.2:+80059476 | MS.gene06426:CDS |
GCACTGGCGAATCAAAGTTA+AGG | 0.535732 | 3.2:+80059435 | MS.gene06426:CDS |
GGGGTAATTTCCTTTGAATG+AGG | 0.536279 | 3.2:-80058243 | None:intergenic |
TCCTACAATGGAGGGGACCA+AGG | 0.538011 | 3.2:+80059043 | MS.gene06426:CDS |
ATGCAGATTTACTCATACTC+AGG | 0.538087 | 3.2:+80058882 | MS.gene06426:CDS |
ATTTGAATGAAATATTTACA+TGG | 0.539540 | 3.2:+80059068 | MS.gene06426:CDS |
GAAATAGCAAACTACACAGA+TGG | 0.541544 | 3.2:+80059412 | MS.gene06426:CDS |
ATTTGGTATTGGAAAACAGT+TGG | 0.541578 | 3.2:-80058285 | None:intergenic |
ATGCCGGAAATCACTGCTAC+CGG | 0.545589 | 3.2:+80058926 | MS.gene06426:CDS |
TGAAGCACATAGAGAATTGG+TGG | 0.546520 | 3.2:-80059190 | None:intergenic |
TTGGACGTGAAGGAAATGTA+TGG | 0.546585 | 3.2:+80058330 | MS.gene06426:CDS |
AGAAGCGGTTTGGAAGCAGC+AGG | 0.547255 | 3.2:+80058734 | MS.gene06426:CDS |
AGCAGAAGGCACAGTTGGAG+TGG | 0.548612 | 3.2:+80059374 | MS.gene06426:CDS |
TTTGGAAGCAGCAGGGTGGA+AGG | 0.549025 | 3.2:+80058742 | MS.gene06426:CDS |
TATGGGGTGGCTCAGATCCT+CGG | 0.552847 | 3.2:+80057835 | MS.gene06426:CDS |
TCTCATCAACAAGTATTACT+AGG | 0.558372 | 3.2:-80058694 | None:intergenic |
GTACCAGGAGATCCGAGACT+TGG | 0.558725 | 3.2:-80058116 | None:intergenic |
AGATTGAGTCCTACAATGGA+GGG | 0.566288 | 3.2:+80059035 | MS.gene06426:CDS |
CCTGTTGAAGTCAAAGCAGA+AGG | 0.570557 | 3.2:+80059360 | MS.gene06426:CDS |
GGCCTTGCTACCTCATTCAA+AGG | 0.584805 | 3.2:+80058233 | MS.gene06426:CDS |
ATCCGAGACTTGGTAGAGAA+GGG | 0.585852 | 3.2:-80058106 | None:intergenic |
GCAGAAGGCACAGTTGGAGT+GGG | 0.589609 | 3.2:+80059375 | MS.gene06426:CDS |
AACGCAGAACTGGTTTACAA+TGG | 0.591344 | 3.2:+80058563 | MS.gene06426:intron |
GCACTTCCTATGAGAGGCAG+AGG | 0.595671 | 3.2:+80058419 | MS.gene06426:CDS |
CAAACTACACAGATGGGCAC+TGG | 0.597035 | 3.2:+80059419 | MS.gene06426:CDS |
AAAGAACTAGTTGGACGTGA+AGG | 0.598037 | 3.2:+80058320 | MS.gene06426:CDS |
GAGATTGAGTCCTACAATGG+AGG | 0.602635 | 3.2:+80059034 | MS.gene06426:CDS |
ATTTAACAGGCTCTAGTGCA+AGG | 0.604649 | 3.2:+80057605 | MS.gene06426:CDS |
AAATAGCAAACTACACAGAT+GGG | 0.605901 | 3.2:+80059413 | MS.gene06426:CDS |
TGAATGCAGAATTGTTGCAT+AGG | 0.609143 | 3.2:-80058603 | None:intergenic |
AATGAGATTGAGTCCTACAA+TGG | 0.611979 | 3.2:+80059031 | MS.gene06426:CDS |
GTGAACAGGTGGATATGGGG+TGG | 0.612033 | 3.2:+80057822 | MS.gene06426:intron |
AAGAGATGACATGGTAACTG+TGG | 0.612180 | 3.2:-80059566 | None:intergenic |
TGCTGCAAACAGTGTGACAT+GGG | 0.614941 | 3.2:+80058028 | MS.gene06426:CDS |
TAAAGCAGAAAGAGATGACA+TGG | 0.615606 | 3.2:-80059575 | None:intergenic |
ATGAGATTGAGTCTTGTACC+AGG | 0.621202 | 3.2:-80058131 | None:intergenic |
AGAGATGACATGGTAACTGT+GGG | 0.623896 | 3.2:-80059565 | None:intergenic |
TGGCTCAGCACCAAACAACA+TGG | 0.624342 | 3.2:-80059170 | None:intergenic |
ATGCTGCAAACAGTGTGACA+TGG | 0.624925 | 3.2:+80058027 | MS.gene06426:CDS |
ATATCCAGAATGGATTGATG+AGG | 0.627762 | 3.2:+80058058 | MS.gene06426:CDS |
AAAAGCATGTTGCGGCATTG+GGG | 0.631670 | 3.2:+80059499 | MS.gene06426:CDS |
ATCAGTGGATATCACAGAAG+CGG | 0.632224 | 3.2:+80058719 | MS.gene06426:CDS |
CTTGTTGATGAGACAATCAG+TGG | 0.634716 | 3.2:+80058704 | MS.gene06426:CDS |
TTTGTGAACAGGTGGATATG+GGG | 0.635856 | 3.2:+80057819 | MS.gene06426:intron |
TGTAAATCTCTGGAGAGTAG+AGG | 0.638062 | 3.2:-80057573 | None:intergenic |
TGAATGAAATATTTACATGG+TGG | 0.649910 | 3.2:+80059071 | MS.gene06426:CDS |
CCTACAATGGAGGGGACCAA+GGG | 0.651743 | 3.2:+80059044 | MS.gene06426:CDS |
TCAAATGTAGATACTGATTG+GGG | 0.666900 | 3.2:+80057864 | MS.gene06426:CDS |
ATGTAGCACATGCAAAGTGG+TGG | 0.666975 | 3.2:+80059296 | MS.gene06426:CDS |
AGCACATGCAAAGTGGTGGA+AGG | 0.669357 | 3.2:+80059300 | MS.gene06426:CDS |
GATTGAGTCCTACAATGGAG+GGG | 0.670790 | 3.2:+80059036 | MS.gene06426:CDS |
GAAGCGGTTTGGAAGCAGCA+GGG | 0.673301 | 3.2:+80058735 | MS.gene06426:CDS |
GCGGTTTGGAAGCAGCAGGG+TGG | 0.677572 | 3.2:+80058738 | MS.gene06426:CDS |
GTGACTGGAAAAGCATGTTG+CGG | 0.678093 | 3.2:+80059491 | MS.gene06426:CDS |
ACTAGAGCCTGTTAAATGGG+TGG | 0.681890 | 3.2:-80057599 | None:intergenic |
TAATGAAGAGCACATAAATG+GGG | 0.692136 | 3.2:-80058262 | None:intergenic |
GAACTTGCACTTCCTATGAG+AGG | 0.692338 | 3.2:+80058413 | MS.gene06426:CDS |
TAGATGTAGAGCAACATGTG+TGG | 0.702518 | 3.2:-80058000 | None:intergenic |
TAGTCCCTGAAGCATAACCA+TGG | 0.705595 | 3.2:-80059229 | None:intergenic |
TCTACATTTGATATGTACCG+AGG | 0.712296 | 3.2:-80057852 | None:intergenic |
GATGACATGGTAACTGTGGG+AGG | 0.721623 | 3.2:-80059562 | None:intergenic |
GTGATGTAGCACATGCAAAG+TGG | 0.727257 | 3.2:+80059293 | MS.gene06426:CDS |
GGAGTGGGATCGAAGCCAAG+CGG | 0.729172 | 3.2:+80059390 | MS.gene06426:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAGAAAAAAATGAATTTCA+AGG | + | chr3.2:80057915-80057934 | MS.gene06426:CDS | 15.0% |
!! | ATTTGAATGAAATATTTACA+TGG | + | chr3.2:80059068-80059087 | MS.gene06426:CDS | 15.0% |
!! | ATTTAATGAGAAAAACATGA+TGG | - | chr3.2:80058510-80058529 | None:intergenic | 20.0% |
! | AAAAAGATGCTTACAATGAA+TGG | + | chr3.2:80058801-80058820 | MS.gene06426:CDS | 25.0% |
! | AAAAATGAATTTCAAGGCAT+TGG | + | chr3.2:80057921-80057940 | MS.gene06426:CDS | 25.0% |
! | ATATTTCATTCAAATACCCT+TGG | - | chr3.2:80059063-80059082 | None:intergenic | 25.0% |
! | ATCATGAAACTTATGAAACT+GGG | + | chr3.2:80057661-80057680 | MS.gene06426:intron | 25.0% |
! | TATCAAATGTAGATACTGAT+TGG | + | chr3.2:80057862-80057881 | MS.gene06426:CDS | 25.0% |
! | TGAATGAAATATTTACATGG+TGG | + | chr3.2:80059071-80059090 | MS.gene06426:CDS | 25.0% |
!! | AGGAACATAGATTTTCTATT+TGG | + | chr3.2:80058902-80058921 | MS.gene06426:CDS | 25.0% |
!! | ATCAAATGTAGATACTGATT+GGG | + | chr3.2:80057863-80057882 | MS.gene06426:CDS | 25.0% |
!! | GGAACATAGATTTTCTATTT+GGG | + | chr3.2:80058903-80058922 | MS.gene06426:CDS | 25.0% |
AAATAGCAAACTACACAGAT+GGG | + | chr3.2:80059413-80059432 | MS.gene06426:CDS | 30.0% | |
AATGGAATTACAGCAAATTC+AGG | + | chr3.2:80058819-80058838 | MS.gene06426:CDS | 30.0% | |
CAAAACTGTTGTAAAAGCTT+GGG | - | chr3.2:80059340-80059359 | None:intergenic | 30.0% | |
CAAATGAAAACCATGTTGTT+TGG | + | chr3.2:80059160-80059179 | MS.gene06426:CDS | 30.0% | |
CATCATGAAACTTATGAAAC+TGG | + | chr3.2:80057660-80057679 | MS.gene06426:intron | 30.0% | |
GAGAACAAGTACTAAAATAG+TGG | - | chr3.2:80057759-80057778 | None:intergenic | 30.0% | |
GTATAGATAATCTTTGTGAC+TGG | + | chr3.2:80059476-80059495 | MS.gene06426:CDS | 30.0% | |
TCATGAAACTTATGAAACTG+GGG | + | chr3.2:80057662-80057681 | MS.gene06426:intron | 30.0% | |
TCTCATCAACAAGTATTACT+AGG | - | chr3.2:80058697-80058716 | None:intergenic | 30.0% | |
TCTCATTTATATGATCCATC+AGG | - | chr3.2:80059018-80059037 | None:intergenic | 30.0% | |
TTCAAGAAGTTCATATGTCT+TGG | - | chr3.2:80059106-80059125 | None:intergenic | 30.0% | |
! | ATTTGGTATTGGAAAACAGT+TGG | - | chr3.2:80058288-80058307 | None:intergenic | 30.0% |
! | GTAATGAAGAGCACATAAAT+GGG | - | chr3.2:80058266-80058285 | None:intergenic | 30.0% |
! | TAATGAAGAGCACATAAATG+GGG | - | chr3.2:80058265-80058284 | None:intergenic | 30.0% |
! | TCAAATGTAGATACTGATTG+GGG | + | chr3.2:80057864-80057883 | MS.gene06426:CDS | 30.0% |
! | TTTTCTTGTCGCAAAATTGA+TGG | + | chr3.2:80058530-80058549 | MS.gene06426:intron | 30.0% |
!! | GAACTTCTTGAAGCATTTTT+GGG | + | chr3.2:80059114-80059133 | MS.gene06426:CDS | 30.0% |
!! | TGAACTTCTTGAAGCATTTT+TGG | + | chr3.2:80059113-80059132 | MS.gene06426:CDS | 30.0% |
!!! | TAAGCATCTTTTTCAGCTTT+GGG | - | chr3.2:80058794-80058813 | None:intergenic | 30.0% |
AAATATTTACATGGTGGCAC+AGG | + | chr3.2:80059077-80059096 | MS.gene06426:CDS | 35.0% | |
AATGAATTCAAACGCAGAAC+TGG | + | chr3.2:80058553-80058572 | MS.gene06426:intron | 35.0% | |
AATGAGATTGAGTCCTACAA+TGG | + | chr3.2:80059031-80059050 | MS.gene06426:CDS | 35.0% | |
ACAACACTGAGATATCTAAC+TGG | + | chr3.2:80057958-80057977 | MS.gene06426:CDS | 35.0% | |
ACTTGTTCTCTTCTTAGCAT+AGG | + | chr3.2:80057769-80057788 | MS.gene06426:intron | 35.0% | |
ATGCAGATTTACTCATACTC+AGG | + | chr3.2:80058882-80058901 | MS.gene06426:CDS | 35.0% | |
CATGAAACTTATGAAACTGG+GGG | + | chr3.2:80057663-80057682 | MS.gene06426:intron | 35.0% | |
CTCTATGTGCTTCACTATTT+AGG | + | chr3.2:80059199-80059218 | MS.gene06426:CDS | 35.0% | |
CTTGTTCTCTTCTTAGCATA+GGG | + | chr3.2:80057770-80057789 | MS.gene06426:intron | 35.0% | |
GAAATAGCAAACTACACAGA+TGG | + | chr3.2:80059412-80059431 | MS.gene06426:CDS | 35.0% | |
GCAAAACTGTTGTAAAAGCT+TGG | - | chr3.2:80059341-80059360 | None:intergenic | 35.0% | |
GTTAAGCTACCTTGTAAGAA+TGG | + | chr3.2:80058158-80058177 | MS.gene06426:CDS | 35.0% | |
TAAAGCAGAAAGAGATGACA+TGG | - | chr3.2:80059578-80059597 | None:intergenic | 35.0% | |
TACAATACCACCCATTTAAC+AGG | + | chr3.2:80057592-80057611 | MS.gene06426:CDS | 35.0% | |
TAGTGAAGCACATAGAGAAT+TGG | - | chr3.2:80059196-80059215 | None:intergenic | 35.0% | |
TCAGCTCATGTTTATGTTTG+TGG | + | chr3.2:80058623-80058642 | MS.gene06426:CDS | 35.0% | |
TCTACATTTGATATGTACCG+AGG | - | chr3.2:80057855-80057874 | None:intergenic | 35.0% | |
TCTCTCAAAACACTCAAGTT+TGG | - | chr3.2:80058365-80058384 | None:intergenic | 35.0% | |
TCTTTGCAGGTAAACAGATT+TGG | - | chr3.2:80058305-80058324 | None:intergenic | 35.0% | |
TGAATGCAGAATTGTTGCAT+AGG | - | chr3.2:80058606-80058625 | None:intergenic | 35.0% | |
TTGTTCTCTTCTTAGCATAG+GGG | + | chr3.2:80057771-80057790 | MS.gene06426:intron | 35.0% | |
TTTACCTGCAAAGAACTAGT+TGG | + | chr3.2:80058311-80058330 | MS.gene06426:CDS | 35.0% | |
! | ACTATTTAGGTTTGAAGCCA+TGG | + | chr3.2:80059212-80059231 | MS.gene06426:CDS | 35.0% |
! | ATCTGTGCAATTTTGTGAAC+AGG | + | chr3.2:80057808-80057827 | MS.gene06426:intron | 35.0% |
! | ATTTTGTGAACAGGTGGATA+TGG | + | chr3.2:80057817-80057836 | MS.gene06426:intron | 35.0% |
! | CAGGTAAACAGATTTGGTAT+TGG | - | chr3.2:80058299-80058318 | None:intergenic | 35.0% |
! | GGTAATGAAGAGCACATAAA+TGG | - | chr3.2:80058267-80058286 | None:intergenic | 35.0% |
! | TTTTGTGAACAGGTGGATAT+GGG | + | chr3.2:80057818-80057837 | MS.gene06426:intron | 35.0% |
!! | AGATTTTCTATTTGGGATGC+CGG | + | chr3.2:80058910-80058929 | MS.gene06426:CDS | 35.0% |
!! | ATATCCAGAATGGATTGATG+AGG | + | chr3.2:80058058-80058077 | MS.gene06426:CDS | 35.0% |
!! | ATTACAGCAAATTCAGGTTG+TGG | + | chr3.2:80058825-80058844 | MS.gene06426:CDS | 35.0% |
!! | TCTTTTTAACTCTGGTGTCA+TGG | + | chr3.2:80058961-80058980 | MS.gene06426:CDS | 35.0% |
!!! | AAGCATCTTTTTCAGCTTTG+GGG | - | chr3.2:80058793-80058812 | None:intergenic | 35.0% |
!!! | GTAAGCATCTTTTTCAGCTT+TGG | - | chr3.2:80058795-80058814 | None:intergenic | 35.0% |
!!! | TTCTTGAAGCATTTTTGGGT+TGG | + | chr3.2:80059118-80059137 | MS.gene06426:CDS | 35.0% |
AAAAAGAGTGGCATCGTTAC+CGG | - | chr3.2:80058948-80058967 | None:intergenic | 40.0% | |
AAAGAACTAGTTGGACGTGA+AGG | + | chr3.2:80058320-80058339 | MS.gene06426:CDS | 40.0% | |
AAGAGATGACATGGTAACTG+TGG | - | chr3.2:80059569-80059588 | None:intergenic | 40.0% | |
AAGTTTGGGAATGTGAGAGA+TGG | - | chr3.2:80058462-80058481 | None:intergenic | 40.0% | |
AGAGATGACATGGTAACTGT+GGG | - | chr3.2:80059568-80059587 | None:intergenic | 40.0% | |
AGATTGAGTCCTACAATGGA+GGG | + | chr3.2:80059035-80059054 | MS.gene06426:CDS | 40.0% | |
AGCTGAAATGTGCAGTTTGA+TGG | - | chr3.2:80058995-80059014 | None:intergenic | 40.0% | |
ATCAGTGGATATCACAGAAG+CGG | + | chr3.2:80058719-80058738 | MS.gene06426:CDS | 40.0% | |
ATGCAAACGAGTGCAAGTTT+GGG | - | chr3.2:80058476-80058495 | None:intergenic | 40.0% | |
ATTGTTGCATAGGCTTCTCT+TGG | - | chr3.2:80058596-80058615 | None:intergenic | 40.0% | |
CAGTTAGCTCCATTCTTACA+AGG | - | chr3.2:80058170-80058189 | None:intergenic | 40.0% | |
CTTGTAAGAATGGAGCTAAC+TGG | + | chr3.2:80058168-80058187 | MS.gene06426:CDS | 40.0% | |
GAAAAAGTTCAGCTTCCAGT+TGG | + | chr3.2:80058383-80058402 | MS.gene06426:CDS | 40.0% | |
GACACCAGAGTTAAAAAGAG+TGG | - | chr3.2:80058960-80058979 | None:intergenic | 40.0% | |
GCACAAAGCATAAGAATGTC+AGG | + | chr3.2:80058659-80058678 | MS.gene06426:CDS | 40.0% | |
GGGGTAATTTCCTTTGAATG+AGG | - | chr3.2:80058246-80058265 | None:intergenic | 40.0% | |
TAGATGTAGAGCAACATGTG+TGG | - | chr3.2:80058003-80058022 | None:intergenic | 40.0% | |
TCAGGGACTATGATTGTAAC+TGG | + | chr3.2:80059242-80059261 | MS.gene06426:CDS | 40.0% | |
TCTAGTGCAAGGTATGTTTC+TGG | + | chr3.2:80057616-80057635 | MS.gene06426:intron | 40.0% | |
TCTTCCTCATCAATCCATTC+TGG | - | chr3.2:80058065-80058084 | None:intergenic | 40.0% | |
TGAAGCACATAGAGAATTGG+TGG | - | chr3.2:80059193-80059212 | None:intergenic | 40.0% | |
TGCACTAGAGCCTGTTAAAT+GGG | - | chr3.2:80057605-80057624 | None:intergenic | 40.0% | |
TGGGTGGTATTGTAAATCTC+TGG | - | chr3.2:80057586-80057605 | None:intergenic | 40.0% | |
TTCCTTTGAATGAGGTAGCA+AGG | - | chr3.2:80058238-80058257 | None:intergenic | 40.0% | |
TTGCACTAGAGCCTGTTAAA+TGG | - | chr3.2:80057606-80057625 | None:intergenic | 40.0% | |
TTGGACGTGAAGGAAATGTA+TGG | + | chr3.2:80058330-80058349 | MS.gene06426:CDS | 40.0% | |
TTTGTGAACAGGTGGATATG+GGG | + | chr3.2:80057819-80057838 | MS.gene06426:intron | 40.0% | |
! | AACGCAGAACTGGTTTACAA+TGG | + | chr3.2:80058563-80058582 | MS.gene06426:intron | 40.0% |
! | ATGAGATTGAGTCTTGTACC+AGG | - | chr3.2:80058134-80058153 | None:intergenic | 40.0% |
! | ATTTAACAGGCTCTAGTGCA+AGG | + | chr3.2:80057605-80057624 | MS.gene06426:CDS | 40.0% |
! | CTTGTTGATGAGACAATCAG+TGG | + | chr3.2:80058704-80058723 | MS.gene06426:CDS | 40.0% |
! | TGTAAATCTCTGGAGAGTAG+AGG | - | chr3.2:80057576-80057595 | None:intergenic | 40.0% |
! | TGTGCAATTTTGTGAACAGG+TGG | + | chr3.2:80057811-80057830 | MS.gene06426:intron | 40.0% |
!! | GATGCCACTCTTTTTAACTC+TGG | + | chr3.2:80058953-80058972 | MS.gene06426:CDS | 40.0% |
!! | TGTAGTTTGCTATTTCCGCT+TGG | - | chr3.2:80059408-80059427 | None:intergenic | 40.0% |
!!! | TTTTAACTCTGGTGTCATGG+TGG | + | chr3.2:80058964-80058983 | MS.gene06426:CDS | 40.0% |
AACATACCTCTGCCTCTCAT+AGG | - | chr3.2:80058428-80058447 | None:intergenic | 45.0% | |
ACTAGAGCCTGTTAAATGGG+TGG | - | chr3.2:80057602-80057621 | None:intergenic | 45.0% | |
ATGCTGCAAACAGTGTGACA+TGG | + | chr3.2:80058027-80058046 | MS.gene06426:CDS | 45.0% | |
ATGTAGCACATGCAAAGTGG+TGG | + | chr3.2:80059296-80059315 | MS.gene06426:CDS | 45.0% | |
CATGCAAACGAGTGCAAGTT+TGG | - | chr3.2:80058477-80058496 | None:intergenic | 45.0% | |
CCTGTTGAAGTCAAAGCAGA+AGG | + | chr3.2:80059360-80059379 | MS.gene06426:CDS | 45.0% | |
GAACTTGCACTTCCTATGAG+AGG | + | chr3.2:80058413-80058432 | MS.gene06426:CDS | 45.0% | |
GAAGCCATGGTTATGCTTCA+GGG | + | chr3.2:80059225-80059244 | MS.gene06426:CDS | 45.0% | |
GAGATTGAGTCCTACAATGG+AGG | + | chr3.2:80059034-80059053 | MS.gene06426:CDS | 45.0% | |
GATTGAGTCCTACAATGGAG+GGG | + | chr3.2:80059036-80059055 | MS.gene06426:CDS | 45.0% | |
GCAAGTTCACATGATCCAAC+TGG | - | chr3.2:80058401-80058420 | None:intergenic | 45.0% | |
GGGACTATCTGTGAGAAAAC+AGG | + | chr3.2:80057683-80057702 | MS.gene06426:intron | 45.0% | |
GGGAGTCTCTATATCCAGAA+TGG | + | chr3.2:80058048-80058067 | MS.gene06426:CDS | 45.0% | |
GTGATGTAGCACATGCAAAG+TGG | + | chr3.2:80059293-80059312 | MS.gene06426:CDS | 45.0% | |
TAGTCCCTGAAGCATAACCA+TGG | - | chr3.2:80059232-80059251 | None:intergenic | 45.0% | |
TATGCTTTGTGCTGCAGCTA+TGG | - | chr3.2:80058651-80058670 | None:intergenic | 45.0% | |
TGAAGCCATGGTTATGCTTC+AGG | + | chr3.2:80059224-80059243 | MS.gene06426:CDS | 45.0% | |
TGCTGCAAACAGTGTGACAT+GGG | + | chr3.2:80058028-80058047 | MS.gene06426:CDS | 45.0% | |
TGGATATCACAGAAGCGGTT+TGG | + | chr3.2:80058724-80058743 | MS.gene06426:CDS | 45.0% | |
TTACCGGTAGCAGTGATTTC+CGG | - | chr3.2:80058932-80058951 | None:intergenic | 45.0% | |
! | AAAAGCATGTTGCGGCATTG+GGG | + | chr3.2:80059499-80059518 | MS.gene06426:CDS | 45.0% |
! | ACGTCCAACTAGTTCTTTGC+AGG | - | chr3.2:80058318-80058337 | None:intergenic | 45.0% |
! | ATCCGAGACTTGGTAGAGAA+GGG | - | chr3.2:80058109-80058128 | None:intergenic | 45.0% |
! | CCTTCTGCTTTGACTTCAAC+AGG | - | chr3.2:80059363-80059382 | None:intergenic | 45.0% |
! | GAAAAGCATGTTGCGGCATT+GGG | + | chr3.2:80059498-80059517 | MS.gene06426:CDS | 45.0% |
! | GCACTGGCGAATCAAAGTTA+AGG | + | chr3.2:80059435-80059454 | MS.gene06426:CDS | 45.0% |
! | GTGACTGGAAAAGCATGTTG+CGG | + | chr3.2:80059491-80059510 | MS.gene06426:CDS | 45.0% |
!!! | GCATTTTTGGGTTGGTGATG+AGG | + | chr3.2:80059126-80059145 | MS.gene06426:CDS | 45.0% |
ATGCCGGAAATCACTGCTAC+CGG | + | chr3.2:80058926-80058945 | MS.gene06426:CDS | 50.0% | |
CAAACTACACAGATGGGCAC+TGG | + | chr3.2:80059419-80059438 | MS.gene06426:CDS | 50.0% | |
CTGCACATTTCAGCTCCTGA+TGG | + | chr3.2:80059000-80059019 | MS.gene06426:CDS | 50.0% | |
CTTGGTAGAGAAGGGCAAAC+AGG | - | chr3.2:80058101-80058120 | None:intergenic | 50.0% | |
GATGACATGGTAACTGTGGG+AGG | - | chr3.2:80059565-80059584 | None:intergenic | 50.0% | |
GGCCTTGCTACCTCATTCAA+AGG | + | chr3.2:80058233-80058252 | MS.gene06426:CDS | 50.0% | |
TGCCCTTCTCTACCAAGTCT+CGG | + | chr3.2:80058104-80058123 | MS.gene06426:CDS | 50.0% | |
TGGCTCAGCACCAAACAACA+TGG | - | chr3.2:80059173-80059192 | None:intergenic | 50.0% | |
! | AGCACATGCAAAGTGGTGGA+AGG | + | chr3.2:80059300-80059319 | MS.gene06426:CDS | 50.0% |
! | ATGGTAACTGTGGGAGGTGT+TGG | - | chr3.2:80059559-80059578 | None:intergenic | 50.0% |
! | GATCCGAGACTTGGTAGAGA+AGG | - | chr3.2:80058110-80058129 | None:intergenic | 50.0% |
! | GGAAAAGCATGTTGCGGCAT+TGG | + | chr3.2:80059497-80059516 | MS.gene06426:CDS | 50.0% |
! | GTCAAAGCAGAAGGCACAGT+TGG | + | chr3.2:80059369-80059388 | MS.gene06426:CDS | 50.0% |
CCTACAATGGAGGGGACCAA+GGG | + | chr3.2:80059044-80059063 | MS.gene06426:CDS | 55.0% | |
CTACCAAGTCTCGGATCTCC+TGG | + | chr3.2:80058113-80058132 | MS.gene06426:CDS | 55.0% | |
GCACTTCCTATGAGAGGCAG+AGG | + | chr3.2:80058419-80058438 | MS.gene06426:CDS | 55.0% | |
GTACCAGGAGATCCGAGACT+TGG | - | chr3.2:80058119-80058138 | None:intergenic | 55.0% | |
GTGAACAGGTGGATATGGGG+TGG | + | chr3.2:80057822-80057841 | MS.gene06426:intron | 55.0% | |
TATGGGGTGGCTCAGATCCT+CGG | + | chr3.2:80057835-80057854 | MS.gene06426:CDS | 55.0% | |
TCCTACAATGGAGGGGACCA+AGG | + | chr3.2:80059043-80059062 | MS.gene06426:CDS | 55.0% | |
TTTGGAAGCAGCAGGGTGGA+AGG | + | chr3.2:80058742-80058761 | MS.gene06426:CDS | 55.0% | |
! | AGAAGCGGTTTGGAAGCAGC+AGG | + | chr3.2:80058734-80058753 | MS.gene06426:CDS | 55.0% |
! | AGCAGAAGGCACAGTTGGAG+TGG | + | chr3.2:80059374-80059393 | MS.gene06426:CDS | 55.0% |
! | GAAGCGGTTTGGAAGCAGCA+GGG | + | chr3.2:80058735-80058754 | MS.gene06426:CDS | 55.0% |
! | GCAGAAGGCACAGTTGGAGT+GGG | + | chr3.2:80059375-80059394 | MS.gene06426:CDS | 55.0% |
! | GGCATTGGGGAGAGAGTAAC+TGG | + | chr3.2:80059512-80059531 | MS.gene06426:CDS | 55.0% |
CCCTTGGTCCCCTCCATTGT+AGG | - | chr3.2:80059047-80059066 | None:intergenic | 60.0% | |
GGAGTGGGATCGAAGCCAAG+CGG | + | chr3.2:80059390-80059409 | MS.gene06426:CDS | 60.0% | |
CACCTGCAGCTTGCAGCTGC+TGG | + | chr3.2:80058212-80058231 | MS.gene06426:CDS | 65.0% | |
! | GCGGTTTGGAAGCAGCAGGG+TGG | + | chr3.2:80058738-80058757 | MS.gene06426:CDS | 65.0% |
GGCCAGCAGCTGCAAGCTGC+AGG | - | chr3.2:80058217-80058236 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 80057568 | 80059600 | 80057568 | ID=MS.gene06426 |
chr3.2 | mRNA | 80057568 | 80059600 | 80057568 | ID=MS.gene06426.t1;Parent=MS.gene06426 |
chr3.2 | exon | 80057568 | 80057626 | 80057568 | ID=MS.gene06426.t1.exon1;Parent=MS.gene06426.t1 |
chr3.2 | CDS | 80057568 | 80057626 | 80057568 | ID=cds.MS.gene06426.t1;Parent=MS.gene06426.t1 |
chr3.2 | exon | 80057830 | 80058440 | 80057830 | ID=MS.gene06426.t1.exon2;Parent=MS.gene06426.t1 |
chr3.2 | CDS | 80057830 | 80058440 | 80057830 | ID=cds.MS.gene06426.t1;Parent=MS.gene06426.t1 |
chr3.2 | exon | 80058570 | 80059600 | 80058570 | ID=MS.gene06426.t1.exon3;Parent=MS.gene06426.t1 |
chr3.2 | CDS | 80058570 | 80059600 | 80058570 | ID=cds.MS.gene06426.t1;Parent=MS.gene06426.t1 |
Gene Sequence |
Protein sequence |