AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06426


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06426.t1 MTR_3g095910 98.587 566 8 0 1 566 72 637 0.0 1173
MS.gene06426.t1 MTR_1g029130 69.217 575 167 3 2 566 53 627 0.0 842
MS.gene06426.t1 MTR_1g019540 48.247 485 228 9 57 522 55 535 3.02e-164 478
MS.gene06426.t1 MTR_1g019540 48.247 485 228 9 57 522 108 588 1.79e-163 478
MS.gene06426.t1 MTR_1g019530 45.582 498 253 9 39 522 91 584 5.40e-150 444
MS.gene06426.t1 MTR_1g082880 44.726 474 221 8 80 525 91 551 4.90e-139 414
MS.gene06426.t1 MTR_7g113610 40.381 525 273 10 33 528 48 561 3.31e-137 410
MS.gene06426.t1 MTR_1g080460 35.802 162 103 1 235 396 27 187 6.41e-28 118
MS.gene06426.t1 MTR_7g115460 35.119 168 108 1 229 396 30 196 9.68e-28 117
MS.gene06426.t1 MTR_7g109920 28.079 203 107 3 232 395 23 225 1.42e-17 83.6
MS.gene06426.t1 MTR_7g109920 28.079 203 107 3 232 395 23 225 4.09e-17 83.2
MS.gene06426.t1 MTR_1g084670 27.481 262 134 9 228 445 16 265 3.88e-16 80.1
MS.gene06426.t1 MTR_1g084670 27.536 207 111 4 228 395 16 222 4.16e-16 79.0
MS.gene06426.t1 MTR_1g084670 35.043 117 73 1 231 344 19 135 6.28e-16 77.8
MS.gene06426.t1 MTR_4g132185 26.961 204 110 3 231 395 20 223 1.07e-15 78.6
MS.gene06426.t1 MTR_5g012590 28.000 175 111 5 233 395 39 210 2.74e-14 75.9
MS.gene06426.t1 MTR_7g111850 24.016 254 139 7 235 445 26 268 1.09e-12 69.7
MS.gene06426.t1 MTR_4g100950 26.163 172 118 4 233 395 37 208 1.19e-12 70.5
MS.gene06426.t1 MTR_1g084660 26.255 259 128 9 228 445 16 252 7.39e-12 67.0
MS.gene06426.t1 MTR_1g084660 26.108 203 104 4 229 395 17 209 9.00e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06426.t1 AT3G18660 70.753 571 157 3 2 566 88 654 0.0 845
MS.gene06426.t1 AT3G18660 70.228 571 156 3 2 566 88 650 0.0 837
MS.gene06426.t1 AT3G18660 70.053 571 156 3 2 566 88 649 0.0 834
MS.gene06426.t1 AT1G77130 69.674 521 154 4 26 542 74 594 0.0 773
MS.gene06426.t1 AT4G33330 50.823 486 217 9 57 525 43 523 2.16e-171 496
MS.gene06426.t1 AT4G33330 50.823 486 217 9 57 525 122 602 2.29e-170 496
MS.gene06426.t1 AT4G33330 50.823 486 217 9 57 525 111 591 2.91e-170 496
MS.gene06426.t1 AT4G33330 50.716 489 219 9 57 528 111 594 4.32e-170 496
MS.gene06426.t1 AT1G08990 44.490 490 243 8 57 524 79 561 1.99e-142 424
MS.gene06426.t1 AT1G54940 44.016 493 233 9 57 522 74 550 2.61e-137 410
MS.gene06426.t1 AT4G33330 50.000 350 154 8 57 389 122 467 5.42e-108 332
MS.gene06426.t1 AT5G18480 36.095 169 107 1 227 395 24 191 6.61e-30 124
MS.gene06426.t1 AT1G60470 27.413 259 131 7 232 445 21 267 5.71e-18 85.9
MS.gene06426.t1 AT1G60450 27.053 207 110 3 230 395 15 221 1.46e-16 81.6
MS.gene06426.t1 AT1G56600 26.357 258 133 7 233 445 21 266 3.51e-16 80.5
MS.gene06426.t1 AT1G09350 25.616 203 111 2 233 395 15 217 9.46e-16 79.3
MS.gene06426.t1 AT4G26250 25.806 217 120 4 233 408 24 240 1.31e-15 79.0
MS.gene06426.t1 AT5G30500 25.123 203 112 3 230 392 21 223 1.84e-14 73.9
MS.gene06426.t1 AT5G30500 32.203 118 77 1 230 344 21 138 1.72e-13 72.4
MS.gene06426.t1 AT2G47180 34.211 114 72 1 235 345 31 144 2.14e-13 72.0
MS.gene06426.t1 AT2G35710 23.810 210 145 5 199 396 28 234 1.75e-11 66.2
MS.gene06426.t1 AT4G16600 25.989 177 114 6 233 396 58 230 1.96e-11 67.0
MS.gene06426.t1 AT5G23790 31.858 113 74 1 235 344 23 135 6.43e-11 64.3
MS.gene06426.t1 AT2G35710 26.136 176 115 5 233 396 62 234 7.27e-11 65.1

Find 122 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTATGTGCTTCACTATTT+AGG 0.175807 3.2:+80059199 MS.gene06426:CDS
GGTAATGAAGAGCACATAAA+TGG 0.238422 3.2:-80058264 None:intergenic
TGAAGCCATGGTTATGCTTC+AGG 0.255686 3.2:+80059224 MS.gene06426:CDS
TCTTCCTCATCAATCCATTC+TGG 0.258883 3.2:-80058062 None:intergenic
TTGCACTAGAGCCTGTTAAA+TGG 0.289954 3.2:-80057603 None:intergenic
TACAATACCACCCATTTAAC+AGG 0.292959 3.2:+80057592 MS.gene06426:CDS
TCAGCTCATGTTTATGTTTG+TGG 0.297365 3.2:+80058623 MS.gene06426:CDS
TTACCGGTAGCAGTGATTTC+CGG 0.297466 3.2:-80058929 None:intergenic
CACCTGCAGCTTGCAGCTGC+TGG 0.307481 3.2:+80058212 MS.gene06426:CDS
CCTTCTGCTTTGACTTCAAC+AGG 0.309519 3.2:-80059360 None:intergenic
AATGGAATTACAGCAAATTC+AGG 0.311462 3.2:+80058819 MS.gene06426:CDS
TCTCTCAAAACACTCAAGTT+TGG 0.319713 3.2:-80058362 None:intergenic
ACGTCCAACTAGTTCTTTGC+AGG 0.331846 3.2:-80058315 None:intergenic
GAAAAGCATGTTGCGGCATT+GGG 0.356116 3.2:+80059498 MS.gene06426:CDS
TCTTTGCAGGTAAACAGATT+TGG 0.366099 3.2:-80058302 None:intergenic
CAGGTAAACAGATTTGGTAT+TGG 0.380674 3.2:-80058296 None:intergenic
ATCAAATGTAGATACTGATT+GGG 0.390328 3.2:+80057863 MS.gene06426:CDS
TATCAAATGTAGATACTGAT+TGG 0.406559 3.2:+80057862 MS.gene06426:CDS
TCAGGGACTATGATTGTAAC+TGG 0.408838 3.2:+80059242 MS.gene06426:CDS
GGAAAAGCATGTTGCGGCAT+TGG 0.412425 3.2:+80059497 MS.gene06426:CDS
TATGCTTTGTGCTGCAGCTA+TGG 0.414347 3.2:-80058648 None:intergenic
CTTGTAAGAATGGAGCTAAC+TGG 0.418026 3.2:+80058168 MS.gene06426:CDS
GGCATTGGGGAGAGAGTAAC+TGG 0.422215 3.2:+80059512 MS.gene06426:CDS
ATTGTTGCATAGGCTTCTCT+TGG 0.422994 3.2:-80058593 None:intergenic
GCAAAACTGTTGTAAAAGCT+TGG 0.428800 3.2:-80059338 None:intergenic
CCCTTGGTCCCCTCCATTGT+AGG 0.431386 3.2:-80059044 None:intergenic
TGGATATCACAGAAGCGGTT+TGG 0.440256 3.2:+80058724 MS.gene06426:CDS
TGCACTAGAGCCTGTTAAAT+GGG 0.445408 3.2:-80057602 None:intergenic
TGGGTGGTATTGTAAATCTC+TGG 0.456085 3.2:-80057583 None:intergenic
CTTGGTAGAGAAGGGCAAAC+AGG 0.457373 3.2:-80058098 None:intergenic
ACTATTTAGGTTTGAAGCCA+TGG 0.459094 3.2:+80059212 MS.gene06426:CDS
GTAATGAAGAGCACATAAAT+GGG 0.464788 3.2:-80058263 None:intergenic
ACAACACTGAGATATCTAAC+TGG 0.465253 3.2:+80057958 MS.gene06426:CDS
TTCAAGAAGTTCATATGTCT+TGG 0.466879 3.2:-80059103 None:intergenic
CAAATGAAAACCATGTTGTT+TGG 0.468309 3.2:+80059160 MS.gene06426:CDS
GTCAAAGCAGAAGGCACAGT+TGG 0.468496 3.2:+80059369 MS.gene06426:CDS
GGCCAGCAGCTGCAAGCTGC+AGG 0.469350 3.2:-80058214 None:intergenic
CTACCAAGTCTCGGATCTCC+TGG 0.470581 3.2:+80058113 MS.gene06426:CDS
AGCTGAAATGTGCAGTTTGA+TGG 0.471355 3.2:-80058992 None:intergenic
CAAAACTGTTGTAAAAGCTT+GGG 0.471650 3.2:-80059337 None:intergenic
TAGTGAAGCACATAGAGAAT+TGG 0.472510 3.2:-80059193 None:intergenic
CAGTTAGCTCCATTCTTACA+AGG 0.473497 3.2:-80058167 None:intergenic
GTTAAGCTACCTTGTAAGAA+TGG 0.484639 3.2:+80058158 MS.gene06426:CDS
TGCCCTTCTCTACCAAGTCT+CGG 0.486023 3.2:+80058104 MS.gene06426:CDS
GAAGCCATGGTTATGCTTCA+GGG 0.489159 3.2:+80059225 MS.gene06426:CDS
GCACAAAGCATAAGAATGTC+AGG 0.490485 3.2:+80058659 MS.gene06426:CDS
GATCCGAGACTTGGTAGAGA+AGG 0.490655 3.2:-80058107 None:intergenic
TTTACCTGCAAAGAACTAGT+TGG 0.491571 3.2:+80058311 MS.gene06426:CDS
GCAAGTTCACATGATCCAAC+TGG 0.492733 3.2:-80058398 None:intergenic
TCTCATTTATATGATCCATC+AGG 0.500815 3.2:-80059015 None:intergenic
ATGGTAACTGTGGGAGGTGT+TGG 0.516236 3.2:-80059556 None:intergenic
ATATTTCATTCAAATACCCT+TGG 0.517914 3.2:-80059060 None:intergenic
TTCCTTTGAATGAGGTAGCA+AGG 0.523339 3.2:-80058235 None:intergenic
TGTAGTTTGCTATTTCCGCT+TGG 0.524042 3.2:-80059405 None:intergenic
AAATATTTACATGGTGGCAC+AGG 0.525162 3.2:+80059077 MS.gene06426:CDS
CTGCACATTTCAGCTCCTGA+TGG 0.529440 3.2:+80059000 MS.gene06426:CDS
ATTACAGCAAATTCAGGTTG+TGG 0.530607 3.2:+80058825 MS.gene06426:CDS
AACATACCTCTGCCTCTCAT+AGG 0.531287 3.2:-80058425 None:intergenic
GGGAGTCTCTATATCCAGAA+TGG 0.532222 3.2:+80058048 MS.gene06426:CDS
GTATAGATAATCTTTGTGAC+TGG 0.535311 3.2:+80059476 MS.gene06426:CDS
GCACTGGCGAATCAAAGTTA+AGG 0.535732 3.2:+80059435 MS.gene06426:CDS
GGGGTAATTTCCTTTGAATG+AGG 0.536279 3.2:-80058243 None:intergenic
TCCTACAATGGAGGGGACCA+AGG 0.538011 3.2:+80059043 MS.gene06426:CDS
ATGCAGATTTACTCATACTC+AGG 0.538087 3.2:+80058882 MS.gene06426:CDS
ATTTGAATGAAATATTTACA+TGG 0.539540 3.2:+80059068 MS.gene06426:CDS
GAAATAGCAAACTACACAGA+TGG 0.541544 3.2:+80059412 MS.gene06426:CDS
ATTTGGTATTGGAAAACAGT+TGG 0.541578 3.2:-80058285 None:intergenic
ATGCCGGAAATCACTGCTAC+CGG 0.545589 3.2:+80058926 MS.gene06426:CDS
TGAAGCACATAGAGAATTGG+TGG 0.546520 3.2:-80059190 None:intergenic
TTGGACGTGAAGGAAATGTA+TGG 0.546585 3.2:+80058330 MS.gene06426:CDS
AGAAGCGGTTTGGAAGCAGC+AGG 0.547255 3.2:+80058734 MS.gene06426:CDS
AGCAGAAGGCACAGTTGGAG+TGG 0.548612 3.2:+80059374 MS.gene06426:CDS
TTTGGAAGCAGCAGGGTGGA+AGG 0.549025 3.2:+80058742 MS.gene06426:CDS
TATGGGGTGGCTCAGATCCT+CGG 0.552847 3.2:+80057835 MS.gene06426:CDS
TCTCATCAACAAGTATTACT+AGG 0.558372 3.2:-80058694 None:intergenic
GTACCAGGAGATCCGAGACT+TGG 0.558725 3.2:-80058116 None:intergenic
AGATTGAGTCCTACAATGGA+GGG 0.566288 3.2:+80059035 MS.gene06426:CDS
CCTGTTGAAGTCAAAGCAGA+AGG 0.570557 3.2:+80059360 MS.gene06426:CDS
GGCCTTGCTACCTCATTCAA+AGG 0.584805 3.2:+80058233 MS.gene06426:CDS
ATCCGAGACTTGGTAGAGAA+GGG 0.585852 3.2:-80058106 None:intergenic
GCAGAAGGCACAGTTGGAGT+GGG 0.589609 3.2:+80059375 MS.gene06426:CDS
AACGCAGAACTGGTTTACAA+TGG 0.591344 3.2:+80058563 MS.gene06426:intron
GCACTTCCTATGAGAGGCAG+AGG 0.595671 3.2:+80058419 MS.gene06426:CDS
CAAACTACACAGATGGGCAC+TGG 0.597035 3.2:+80059419 MS.gene06426:CDS
AAAGAACTAGTTGGACGTGA+AGG 0.598037 3.2:+80058320 MS.gene06426:CDS
GAGATTGAGTCCTACAATGG+AGG 0.602635 3.2:+80059034 MS.gene06426:CDS
ATTTAACAGGCTCTAGTGCA+AGG 0.604649 3.2:+80057605 MS.gene06426:CDS
AAATAGCAAACTACACAGAT+GGG 0.605901 3.2:+80059413 MS.gene06426:CDS
TGAATGCAGAATTGTTGCAT+AGG 0.609143 3.2:-80058603 None:intergenic
AATGAGATTGAGTCCTACAA+TGG 0.611979 3.2:+80059031 MS.gene06426:CDS
GTGAACAGGTGGATATGGGG+TGG 0.612033 3.2:+80057822 MS.gene06426:intron
AAGAGATGACATGGTAACTG+TGG 0.612180 3.2:-80059566 None:intergenic
TGCTGCAAACAGTGTGACAT+GGG 0.614941 3.2:+80058028 MS.gene06426:CDS
TAAAGCAGAAAGAGATGACA+TGG 0.615606 3.2:-80059575 None:intergenic
ATGAGATTGAGTCTTGTACC+AGG 0.621202 3.2:-80058131 None:intergenic
AGAGATGACATGGTAACTGT+GGG 0.623896 3.2:-80059565 None:intergenic
TGGCTCAGCACCAAACAACA+TGG 0.624342 3.2:-80059170 None:intergenic
ATGCTGCAAACAGTGTGACA+TGG 0.624925 3.2:+80058027 MS.gene06426:CDS
ATATCCAGAATGGATTGATG+AGG 0.627762 3.2:+80058058 MS.gene06426:CDS
AAAAGCATGTTGCGGCATTG+GGG 0.631670 3.2:+80059499 MS.gene06426:CDS
ATCAGTGGATATCACAGAAG+CGG 0.632224 3.2:+80058719 MS.gene06426:CDS
CTTGTTGATGAGACAATCAG+TGG 0.634716 3.2:+80058704 MS.gene06426:CDS
TTTGTGAACAGGTGGATATG+GGG 0.635856 3.2:+80057819 MS.gene06426:intron
TGTAAATCTCTGGAGAGTAG+AGG 0.638062 3.2:-80057573 None:intergenic
TGAATGAAATATTTACATGG+TGG 0.649910 3.2:+80059071 MS.gene06426:CDS
CCTACAATGGAGGGGACCAA+GGG 0.651743 3.2:+80059044 MS.gene06426:CDS
TCAAATGTAGATACTGATTG+GGG 0.666900 3.2:+80057864 MS.gene06426:CDS
ATGTAGCACATGCAAAGTGG+TGG 0.666975 3.2:+80059296 MS.gene06426:CDS
AGCACATGCAAAGTGGTGGA+AGG 0.669357 3.2:+80059300 MS.gene06426:CDS
GATTGAGTCCTACAATGGAG+GGG 0.670790 3.2:+80059036 MS.gene06426:CDS
GAAGCGGTTTGGAAGCAGCA+GGG 0.673301 3.2:+80058735 MS.gene06426:CDS
GCGGTTTGGAAGCAGCAGGG+TGG 0.677572 3.2:+80058738 MS.gene06426:CDS
GTGACTGGAAAAGCATGTTG+CGG 0.678093 3.2:+80059491 MS.gene06426:CDS
ACTAGAGCCTGTTAAATGGG+TGG 0.681890 3.2:-80057599 None:intergenic
TAATGAAGAGCACATAAATG+GGG 0.692136 3.2:-80058262 None:intergenic
GAACTTGCACTTCCTATGAG+AGG 0.692338 3.2:+80058413 MS.gene06426:CDS
TAGATGTAGAGCAACATGTG+TGG 0.702518 3.2:-80058000 None:intergenic
TAGTCCCTGAAGCATAACCA+TGG 0.705595 3.2:-80059229 None:intergenic
TCTACATTTGATATGTACCG+AGG 0.712296 3.2:-80057852 None:intergenic
GATGACATGGTAACTGTGGG+AGG 0.721623 3.2:-80059562 None:intergenic
GTGATGTAGCACATGCAAAG+TGG 0.727257 3.2:+80059293 MS.gene06426:CDS
GGAGTGGGATCGAAGCCAAG+CGG 0.729172 3.2:+80059390 MS.gene06426:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAAAAAAATGAATTTCA+AGG + chr3.2:80057915-80057934 MS.gene06426:CDS 15.0%
!! ATTTGAATGAAATATTTACA+TGG + chr3.2:80059068-80059087 MS.gene06426:CDS 15.0%
!! ATTTAATGAGAAAAACATGA+TGG - chr3.2:80058510-80058529 None:intergenic 20.0%
! AAAAAGATGCTTACAATGAA+TGG + chr3.2:80058801-80058820 MS.gene06426:CDS 25.0%
! AAAAATGAATTTCAAGGCAT+TGG + chr3.2:80057921-80057940 MS.gene06426:CDS 25.0%
! ATATTTCATTCAAATACCCT+TGG - chr3.2:80059063-80059082 None:intergenic 25.0%
! ATCATGAAACTTATGAAACT+GGG + chr3.2:80057661-80057680 MS.gene06426:intron 25.0%
! TATCAAATGTAGATACTGAT+TGG + chr3.2:80057862-80057881 MS.gene06426:CDS 25.0%
! TGAATGAAATATTTACATGG+TGG + chr3.2:80059071-80059090 MS.gene06426:CDS 25.0%
!! AGGAACATAGATTTTCTATT+TGG + chr3.2:80058902-80058921 MS.gene06426:CDS 25.0%
!! ATCAAATGTAGATACTGATT+GGG + chr3.2:80057863-80057882 MS.gene06426:CDS 25.0%
!! GGAACATAGATTTTCTATTT+GGG + chr3.2:80058903-80058922 MS.gene06426:CDS 25.0%
AAATAGCAAACTACACAGAT+GGG + chr3.2:80059413-80059432 MS.gene06426:CDS 30.0%
AATGGAATTACAGCAAATTC+AGG + chr3.2:80058819-80058838 MS.gene06426:CDS 30.0%
CAAAACTGTTGTAAAAGCTT+GGG - chr3.2:80059340-80059359 None:intergenic 30.0%
CAAATGAAAACCATGTTGTT+TGG + chr3.2:80059160-80059179 MS.gene06426:CDS 30.0%
CATCATGAAACTTATGAAAC+TGG + chr3.2:80057660-80057679 MS.gene06426:intron 30.0%
GAGAACAAGTACTAAAATAG+TGG - chr3.2:80057759-80057778 None:intergenic 30.0%
GTATAGATAATCTTTGTGAC+TGG + chr3.2:80059476-80059495 MS.gene06426:CDS 30.0%
TCATGAAACTTATGAAACTG+GGG + chr3.2:80057662-80057681 MS.gene06426:intron 30.0%
TCTCATCAACAAGTATTACT+AGG - chr3.2:80058697-80058716 None:intergenic 30.0%
TCTCATTTATATGATCCATC+AGG - chr3.2:80059018-80059037 None:intergenic 30.0%
TTCAAGAAGTTCATATGTCT+TGG - chr3.2:80059106-80059125 None:intergenic 30.0%
! ATTTGGTATTGGAAAACAGT+TGG - chr3.2:80058288-80058307 None:intergenic 30.0%
! GTAATGAAGAGCACATAAAT+GGG - chr3.2:80058266-80058285 None:intergenic 30.0%
! TAATGAAGAGCACATAAATG+GGG - chr3.2:80058265-80058284 None:intergenic 30.0%
! TCAAATGTAGATACTGATTG+GGG + chr3.2:80057864-80057883 MS.gene06426:CDS 30.0%
! TTTTCTTGTCGCAAAATTGA+TGG + chr3.2:80058530-80058549 MS.gene06426:intron 30.0%
!! GAACTTCTTGAAGCATTTTT+GGG + chr3.2:80059114-80059133 MS.gene06426:CDS 30.0%
!! TGAACTTCTTGAAGCATTTT+TGG + chr3.2:80059113-80059132 MS.gene06426:CDS 30.0%
!!! TAAGCATCTTTTTCAGCTTT+GGG - chr3.2:80058794-80058813 None:intergenic 30.0%
AAATATTTACATGGTGGCAC+AGG + chr3.2:80059077-80059096 MS.gene06426:CDS 35.0%
AATGAATTCAAACGCAGAAC+TGG + chr3.2:80058553-80058572 MS.gene06426:intron 35.0%
AATGAGATTGAGTCCTACAA+TGG + chr3.2:80059031-80059050 MS.gene06426:CDS 35.0%
ACAACACTGAGATATCTAAC+TGG + chr3.2:80057958-80057977 MS.gene06426:CDS 35.0%
ACTTGTTCTCTTCTTAGCAT+AGG + chr3.2:80057769-80057788 MS.gene06426:intron 35.0%
ATGCAGATTTACTCATACTC+AGG + chr3.2:80058882-80058901 MS.gene06426:CDS 35.0%
CATGAAACTTATGAAACTGG+GGG + chr3.2:80057663-80057682 MS.gene06426:intron 35.0%
CTCTATGTGCTTCACTATTT+AGG + chr3.2:80059199-80059218 MS.gene06426:CDS 35.0%
CTTGTTCTCTTCTTAGCATA+GGG + chr3.2:80057770-80057789 MS.gene06426:intron 35.0%
GAAATAGCAAACTACACAGA+TGG + chr3.2:80059412-80059431 MS.gene06426:CDS 35.0%
GCAAAACTGTTGTAAAAGCT+TGG - chr3.2:80059341-80059360 None:intergenic 35.0%
GTTAAGCTACCTTGTAAGAA+TGG + chr3.2:80058158-80058177 MS.gene06426:CDS 35.0%
TAAAGCAGAAAGAGATGACA+TGG - chr3.2:80059578-80059597 None:intergenic 35.0%
TACAATACCACCCATTTAAC+AGG + chr3.2:80057592-80057611 MS.gene06426:CDS 35.0%
TAGTGAAGCACATAGAGAAT+TGG - chr3.2:80059196-80059215 None:intergenic 35.0%
TCAGCTCATGTTTATGTTTG+TGG + chr3.2:80058623-80058642 MS.gene06426:CDS 35.0%
TCTACATTTGATATGTACCG+AGG - chr3.2:80057855-80057874 None:intergenic 35.0%
TCTCTCAAAACACTCAAGTT+TGG - chr3.2:80058365-80058384 None:intergenic 35.0%
TCTTTGCAGGTAAACAGATT+TGG - chr3.2:80058305-80058324 None:intergenic 35.0%
TGAATGCAGAATTGTTGCAT+AGG - chr3.2:80058606-80058625 None:intergenic 35.0%
TTGTTCTCTTCTTAGCATAG+GGG + chr3.2:80057771-80057790 MS.gene06426:intron 35.0%
TTTACCTGCAAAGAACTAGT+TGG + chr3.2:80058311-80058330 MS.gene06426:CDS 35.0%
! ACTATTTAGGTTTGAAGCCA+TGG + chr3.2:80059212-80059231 MS.gene06426:CDS 35.0%
! ATCTGTGCAATTTTGTGAAC+AGG + chr3.2:80057808-80057827 MS.gene06426:intron 35.0%
! ATTTTGTGAACAGGTGGATA+TGG + chr3.2:80057817-80057836 MS.gene06426:intron 35.0%
! CAGGTAAACAGATTTGGTAT+TGG - chr3.2:80058299-80058318 None:intergenic 35.0%
! GGTAATGAAGAGCACATAAA+TGG - chr3.2:80058267-80058286 None:intergenic 35.0%
! TTTTGTGAACAGGTGGATAT+GGG + chr3.2:80057818-80057837 MS.gene06426:intron 35.0%
!! AGATTTTCTATTTGGGATGC+CGG + chr3.2:80058910-80058929 MS.gene06426:CDS 35.0%
!! ATATCCAGAATGGATTGATG+AGG + chr3.2:80058058-80058077 MS.gene06426:CDS 35.0%
!! ATTACAGCAAATTCAGGTTG+TGG + chr3.2:80058825-80058844 MS.gene06426:CDS 35.0%
!! TCTTTTTAACTCTGGTGTCA+TGG + chr3.2:80058961-80058980 MS.gene06426:CDS 35.0%
!!! AAGCATCTTTTTCAGCTTTG+GGG - chr3.2:80058793-80058812 None:intergenic 35.0%
!!! GTAAGCATCTTTTTCAGCTT+TGG - chr3.2:80058795-80058814 None:intergenic 35.0%
!!! TTCTTGAAGCATTTTTGGGT+TGG + chr3.2:80059118-80059137 MS.gene06426:CDS 35.0%
AAAAAGAGTGGCATCGTTAC+CGG - chr3.2:80058948-80058967 None:intergenic 40.0%
AAAGAACTAGTTGGACGTGA+AGG + chr3.2:80058320-80058339 MS.gene06426:CDS 40.0%
AAGAGATGACATGGTAACTG+TGG - chr3.2:80059569-80059588 None:intergenic 40.0%
AAGTTTGGGAATGTGAGAGA+TGG - chr3.2:80058462-80058481 None:intergenic 40.0%
AGAGATGACATGGTAACTGT+GGG - chr3.2:80059568-80059587 None:intergenic 40.0%
AGATTGAGTCCTACAATGGA+GGG + chr3.2:80059035-80059054 MS.gene06426:CDS 40.0%
AGCTGAAATGTGCAGTTTGA+TGG - chr3.2:80058995-80059014 None:intergenic 40.0%
ATCAGTGGATATCACAGAAG+CGG + chr3.2:80058719-80058738 MS.gene06426:CDS 40.0%
ATGCAAACGAGTGCAAGTTT+GGG - chr3.2:80058476-80058495 None:intergenic 40.0%
ATTGTTGCATAGGCTTCTCT+TGG - chr3.2:80058596-80058615 None:intergenic 40.0%
CAGTTAGCTCCATTCTTACA+AGG - chr3.2:80058170-80058189 None:intergenic 40.0%
CTTGTAAGAATGGAGCTAAC+TGG + chr3.2:80058168-80058187 MS.gene06426:CDS 40.0%
GAAAAAGTTCAGCTTCCAGT+TGG + chr3.2:80058383-80058402 MS.gene06426:CDS 40.0%
GACACCAGAGTTAAAAAGAG+TGG - chr3.2:80058960-80058979 None:intergenic 40.0%
GCACAAAGCATAAGAATGTC+AGG + chr3.2:80058659-80058678 MS.gene06426:CDS 40.0%
GGGGTAATTTCCTTTGAATG+AGG - chr3.2:80058246-80058265 None:intergenic 40.0%
TAGATGTAGAGCAACATGTG+TGG - chr3.2:80058003-80058022 None:intergenic 40.0%
TCAGGGACTATGATTGTAAC+TGG + chr3.2:80059242-80059261 MS.gene06426:CDS 40.0%
TCTAGTGCAAGGTATGTTTC+TGG + chr3.2:80057616-80057635 MS.gene06426:intron 40.0%
TCTTCCTCATCAATCCATTC+TGG - chr3.2:80058065-80058084 None:intergenic 40.0%
TGAAGCACATAGAGAATTGG+TGG - chr3.2:80059193-80059212 None:intergenic 40.0%
TGCACTAGAGCCTGTTAAAT+GGG - chr3.2:80057605-80057624 None:intergenic 40.0%
TGGGTGGTATTGTAAATCTC+TGG - chr3.2:80057586-80057605 None:intergenic 40.0%
TTCCTTTGAATGAGGTAGCA+AGG - chr3.2:80058238-80058257 None:intergenic 40.0%
TTGCACTAGAGCCTGTTAAA+TGG - chr3.2:80057606-80057625 None:intergenic 40.0%
TTGGACGTGAAGGAAATGTA+TGG + chr3.2:80058330-80058349 MS.gene06426:CDS 40.0%
TTTGTGAACAGGTGGATATG+GGG + chr3.2:80057819-80057838 MS.gene06426:intron 40.0%
! AACGCAGAACTGGTTTACAA+TGG + chr3.2:80058563-80058582 MS.gene06426:intron 40.0%
! ATGAGATTGAGTCTTGTACC+AGG - chr3.2:80058134-80058153 None:intergenic 40.0%
! ATTTAACAGGCTCTAGTGCA+AGG + chr3.2:80057605-80057624 MS.gene06426:CDS 40.0%
! CTTGTTGATGAGACAATCAG+TGG + chr3.2:80058704-80058723 MS.gene06426:CDS 40.0%
! TGTAAATCTCTGGAGAGTAG+AGG - chr3.2:80057576-80057595 None:intergenic 40.0%
! TGTGCAATTTTGTGAACAGG+TGG + chr3.2:80057811-80057830 MS.gene06426:intron 40.0%
!! GATGCCACTCTTTTTAACTC+TGG + chr3.2:80058953-80058972 MS.gene06426:CDS 40.0%
!! TGTAGTTTGCTATTTCCGCT+TGG - chr3.2:80059408-80059427 None:intergenic 40.0%
!!! TTTTAACTCTGGTGTCATGG+TGG + chr3.2:80058964-80058983 MS.gene06426:CDS 40.0%
AACATACCTCTGCCTCTCAT+AGG - chr3.2:80058428-80058447 None:intergenic 45.0%
ACTAGAGCCTGTTAAATGGG+TGG - chr3.2:80057602-80057621 None:intergenic 45.0%
ATGCTGCAAACAGTGTGACA+TGG + chr3.2:80058027-80058046 MS.gene06426:CDS 45.0%
ATGTAGCACATGCAAAGTGG+TGG + chr3.2:80059296-80059315 MS.gene06426:CDS 45.0%
CATGCAAACGAGTGCAAGTT+TGG - chr3.2:80058477-80058496 None:intergenic 45.0%
CCTGTTGAAGTCAAAGCAGA+AGG + chr3.2:80059360-80059379 MS.gene06426:CDS 45.0%
GAACTTGCACTTCCTATGAG+AGG + chr3.2:80058413-80058432 MS.gene06426:CDS 45.0%
GAAGCCATGGTTATGCTTCA+GGG + chr3.2:80059225-80059244 MS.gene06426:CDS 45.0%
GAGATTGAGTCCTACAATGG+AGG + chr3.2:80059034-80059053 MS.gene06426:CDS 45.0%
GATTGAGTCCTACAATGGAG+GGG + chr3.2:80059036-80059055 MS.gene06426:CDS 45.0%
GCAAGTTCACATGATCCAAC+TGG - chr3.2:80058401-80058420 None:intergenic 45.0%
GGGACTATCTGTGAGAAAAC+AGG + chr3.2:80057683-80057702 MS.gene06426:intron 45.0%
GGGAGTCTCTATATCCAGAA+TGG + chr3.2:80058048-80058067 MS.gene06426:CDS 45.0%
GTGATGTAGCACATGCAAAG+TGG + chr3.2:80059293-80059312 MS.gene06426:CDS 45.0%
TAGTCCCTGAAGCATAACCA+TGG - chr3.2:80059232-80059251 None:intergenic 45.0%
TATGCTTTGTGCTGCAGCTA+TGG - chr3.2:80058651-80058670 None:intergenic 45.0%
TGAAGCCATGGTTATGCTTC+AGG + chr3.2:80059224-80059243 MS.gene06426:CDS 45.0%
TGCTGCAAACAGTGTGACAT+GGG + chr3.2:80058028-80058047 MS.gene06426:CDS 45.0%
TGGATATCACAGAAGCGGTT+TGG + chr3.2:80058724-80058743 MS.gene06426:CDS 45.0%
TTACCGGTAGCAGTGATTTC+CGG - chr3.2:80058932-80058951 None:intergenic 45.0%
! AAAAGCATGTTGCGGCATTG+GGG + chr3.2:80059499-80059518 MS.gene06426:CDS 45.0%
! ACGTCCAACTAGTTCTTTGC+AGG - chr3.2:80058318-80058337 None:intergenic 45.0%
! ATCCGAGACTTGGTAGAGAA+GGG - chr3.2:80058109-80058128 None:intergenic 45.0%
! CCTTCTGCTTTGACTTCAAC+AGG - chr3.2:80059363-80059382 None:intergenic 45.0%
! GAAAAGCATGTTGCGGCATT+GGG + chr3.2:80059498-80059517 MS.gene06426:CDS 45.0%
! GCACTGGCGAATCAAAGTTA+AGG + chr3.2:80059435-80059454 MS.gene06426:CDS 45.0%
! GTGACTGGAAAAGCATGTTG+CGG + chr3.2:80059491-80059510 MS.gene06426:CDS 45.0%
!!! GCATTTTTGGGTTGGTGATG+AGG + chr3.2:80059126-80059145 MS.gene06426:CDS 45.0%
ATGCCGGAAATCACTGCTAC+CGG + chr3.2:80058926-80058945 MS.gene06426:CDS 50.0%
CAAACTACACAGATGGGCAC+TGG + chr3.2:80059419-80059438 MS.gene06426:CDS 50.0%
CTGCACATTTCAGCTCCTGA+TGG + chr3.2:80059000-80059019 MS.gene06426:CDS 50.0%
CTTGGTAGAGAAGGGCAAAC+AGG - chr3.2:80058101-80058120 None:intergenic 50.0%
GATGACATGGTAACTGTGGG+AGG - chr3.2:80059565-80059584 None:intergenic 50.0%
GGCCTTGCTACCTCATTCAA+AGG + chr3.2:80058233-80058252 MS.gene06426:CDS 50.0%
TGCCCTTCTCTACCAAGTCT+CGG + chr3.2:80058104-80058123 MS.gene06426:CDS 50.0%
TGGCTCAGCACCAAACAACA+TGG - chr3.2:80059173-80059192 None:intergenic 50.0%
! AGCACATGCAAAGTGGTGGA+AGG + chr3.2:80059300-80059319 MS.gene06426:CDS 50.0%
! ATGGTAACTGTGGGAGGTGT+TGG - chr3.2:80059559-80059578 None:intergenic 50.0%
! GATCCGAGACTTGGTAGAGA+AGG - chr3.2:80058110-80058129 None:intergenic 50.0%
! GGAAAAGCATGTTGCGGCAT+TGG + chr3.2:80059497-80059516 MS.gene06426:CDS 50.0%
! GTCAAAGCAGAAGGCACAGT+TGG + chr3.2:80059369-80059388 MS.gene06426:CDS 50.0%
CCTACAATGGAGGGGACCAA+GGG + chr3.2:80059044-80059063 MS.gene06426:CDS 55.0%
CTACCAAGTCTCGGATCTCC+TGG + chr3.2:80058113-80058132 MS.gene06426:CDS 55.0%
GCACTTCCTATGAGAGGCAG+AGG + chr3.2:80058419-80058438 MS.gene06426:CDS 55.0%
GTACCAGGAGATCCGAGACT+TGG - chr3.2:80058119-80058138 None:intergenic 55.0%
GTGAACAGGTGGATATGGGG+TGG + chr3.2:80057822-80057841 MS.gene06426:intron 55.0%
TATGGGGTGGCTCAGATCCT+CGG + chr3.2:80057835-80057854 MS.gene06426:CDS 55.0%
TCCTACAATGGAGGGGACCA+AGG + chr3.2:80059043-80059062 MS.gene06426:CDS 55.0%
TTTGGAAGCAGCAGGGTGGA+AGG + chr3.2:80058742-80058761 MS.gene06426:CDS 55.0%
! AGAAGCGGTTTGGAAGCAGC+AGG + chr3.2:80058734-80058753 MS.gene06426:CDS 55.0%
! AGCAGAAGGCACAGTTGGAG+TGG + chr3.2:80059374-80059393 MS.gene06426:CDS 55.0%
! GAAGCGGTTTGGAAGCAGCA+GGG + chr3.2:80058735-80058754 MS.gene06426:CDS 55.0%
! GCAGAAGGCACAGTTGGAGT+GGG + chr3.2:80059375-80059394 MS.gene06426:CDS 55.0%
! GGCATTGGGGAGAGAGTAAC+TGG + chr3.2:80059512-80059531 MS.gene06426:CDS 55.0%
CCCTTGGTCCCCTCCATTGT+AGG - chr3.2:80059047-80059066 None:intergenic 60.0%
GGAGTGGGATCGAAGCCAAG+CGG + chr3.2:80059390-80059409 MS.gene06426:CDS 60.0%
CACCTGCAGCTTGCAGCTGC+TGG + chr3.2:80058212-80058231 MS.gene06426:CDS 65.0%
! GCGGTTTGGAAGCAGCAGGG+TGG + chr3.2:80058738-80058757 MS.gene06426:CDS 65.0%
GGCCAGCAGCTGCAAGCTGC+AGG - chr3.2:80058217-80058236 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 80057568 80059600 80057568 ID=MS.gene06426
chr3.2 mRNA 80057568 80059600 80057568 ID=MS.gene06426.t1;Parent=MS.gene06426
chr3.2 exon 80057568 80057626 80057568 ID=MS.gene06426.t1.exon1;Parent=MS.gene06426.t1
chr3.2 CDS 80057568 80057626 80057568 ID=cds.MS.gene06426.t1;Parent=MS.gene06426.t1
chr3.2 exon 80057830 80058440 80057830 ID=MS.gene06426.t1.exon2;Parent=MS.gene06426.t1
chr3.2 CDS 80057830 80058440 80057830 ID=cds.MS.gene06426.t1;Parent=MS.gene06426.t1
chr3.2 exon 80058570 80059600 80058570 ID=MS.gene06426.t1.exon3;Parent=MS.gene06426.t1
chr3.2 CDS 80058570 80059600 80058570 ID=cds.MS.gene06426.t1;Parent=MS.gene06426.t1
Gene Sequence

>MS.gene06426

ATGTTCCTCTACTCTCCAGAGATTTACAATACCACCCATTTAACAGGCTCTAGTGCAAGGTATGTTTCTGGTCAAAATAATTAATGTCACATCATCATGAAACTTATGAAACTGGGGGACTATCTGTGAGAAAACAGGTTTGCTAGATATATGCTAAAAAAATCATACTAAATAATAAGAAAAGATCACCACTATTTTAGTACTTGTTCTCTTCTTAGCATAGGGGTGCAATATTCAAGTATCTGTGCAATTTTGTGAACAGGTGGATATGGGGTGGCTCAGATCCTCGGTACATATCAAATGTAGATACTGATTGGGGTGATATAATGAAAGTCACAAAGAAACTGAAAGAAAAAAATGAATTTCAAGGCATTGGACTTCTAAATTTCAACAACACTGAGATATCTAACTGGAAGCATAAATTTCATGATGCCACACATGTTGCTCTACATCTAGAGTATGCTGCAAACAGTGTGACATGGGAGTCTCTATATCCAGAATGGATTGATGAGGAAGAAGAAACTGAAGTTCCTGTTTGCCCTTCTCTACCAAGTCTCGGATCTCCTGGTACAAGACTCAATCTCATTGCTGTTAAGCTACCTTGTAAGAATGGAGCTAACTGGTCTCGAGATGTTGCTCGTTTGCACCTGCAGCTTGCAGCTGCTGGCCTTGCTACCTCATTCAAAGGAAATTACCCCATTTATGTGCTCTTCATTACCAACTGTTTTCCAATACCAAATCTGTTTACCTGCAAAGAACTAGTTGGACGTGAAGGAAATGTATGGTTATACAGACCAAACTTGAGTGTTTTGAGAGAAAAAGTTCAGCTTCCAGTTGGATCATGTGAACTTGCACTTCCTATGAGAGGCAGAGGTATGTTATACTCAATTTCCATCTCTCACATTCCCAAACTTGCACTCGTTTGCATGTATTACTATACCATCATGTTTTTCTCATTAAATTTTTCTTGTCGCAAAATTGATGGAATGAATTCAAACGCAGAACTGGTTTACAATGGAAATGCTCCAAGAGAAGCCTATGCAACAATTCTGCATTCAGCTCATGTTTATGTTTGTGGAGCCATAGCTGCAGCACAAAGCATAAGAATGTCAGGATCAACTAGAGACCTAGTAATACTTGTTGATGAGACAATCAGTGGATATCACAGAAGCGGTTTGGAAGCAGCAGGGTGGAAGGTCAGAACAATAAAGAGAATCAGAAACCCCAAAGCTGAAAAAGATGCTTACAATGAATGGAATTACAGCAAATTCAGGTTGTGGCAGCTTACAGATTATGACAAGATAATATTCATCGATGCAGATTTACTCATACTCAGGAACATAGATTTTCTATTTGGGATGCCGGAAATCACTGCTACCGGTAACGATGCCACTCTTTTTAACTCTGGTGTCATGGTGGTTGAGCCATCAAACTGCACATTTCAGCTCCTGATGGATCATATAAATGAGATTGAGTCCTACAATGGAGGGGACCAAGGGTATTTGAATGAAATATTTACATGGTGGCACAGGATACCAAGACATATGAACTTCTTGAAGCATTTTTGGGTTGGTGATGAGGAAGAGAAGAAGCAAATGAAAACCATGTTGTTTGGTGCTGAGCCACCAATTCTCTATGTGCTTCACTATTTAGGTTTGAAGCCATGGTTATGCTTCAGGGACTATGATTGTAACTGGAATGCTGATATATTTCACGAGTTTGCAAGTGATGTAGCACATGCAAAGTGGTGGAAGGTGCATGATGCAATGCCCAAGCTTTTACAACAGTTTTGCCTGTTGAAGTCAAAGCAGAAGGCACAGTTGGAGTGGGATCGAAGCCAAGCGGAAATAGCAAACTACACAGATGGGCACTGGCGAATCAAAGTTAAGGATCAACGCTTGAAGAAGTGTATAGATAATCTTTGTGACTGGAAAAGCATGTTGCGGCATTGGGGAGAGAGTAACTGGACAGATGATGAGTCTTTTACTCCAACACCTCCCACAGTTACCATGTCATCTCTTTCTGCTTTATGA

Protein sequence

>MS.gene06426.t1

MFLYSPEIYNTTHLTGSSARWIWGGSDPRYISNVDTDWGDIMKVTKKLKEKNEFQGIGLLNFNNTEISNWKHKFHDATHVALHLEYAANSVTWESLYPEWIDEEEETEVPVCPSLPSLGSPGTRLNLIAVKLPCKNGANWSRDVARLHLQLAAAGLATSFKGNYPIYVLFITNCFPIPNLFTCKELVGREGNVWLYRPNLSVLREKVQLPVGSCELALPMRGRELVYNGNAPREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISGYHRSGLEAAGWKVRTIKRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEITATGNDATLFNSGVMVVEPSNCTFQLLMDHINEIESYNGGDQGYLNEIFTWWHRIPRHMNFLKHFWVGDEEEKKQMKTMLFGAEPPILYVLHYLGLKPWLCFRDYDCNWNADIFHEFASDVAHAKWWKVHDAMPKLLQQFCLLKSKQKAQLEWDRSQAEIANYTDGHWRIKVKDQRLKKCIDNLCDWKSMLRHWGESNWTDDESFTPTPPTVTMSSLSAL