Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064623.t1 | XP_003600249.2 | 97.2 | 434 | 10 | 2 | 1 | 434 | 1 | 432 | 9.60E-222 | 779.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064623.t1 | G7J1I7 | 97.2 | 434 | 10 | 2 | 1 | 434 | 1 | 432 | 6.9e-222 | 779.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053508 | MS.gene064623 | 0.80024 | 1.58E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene70895 | MS.gene064623 | PPI |
| MS.gene016987 | MS.gene064623 | PPI |
| MS.gene038202 | MS.gene064623 | PPI |
| MS.gene47603 | MS.gene064623 | PPI |
| MS.gene038142 | MS.gene064623 | PPI |
| MS.gene038143 | MS.gene064623 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064623.t1 | MTR_3g055960 | 97.926 | 434 | 7 | 2 | 1 | 434 | 1 | 432 | 0.0 | 863 |
| MS.gene064623.t1 | MTR_5g094340 | 73.041 | 434 | 98 | 8 | 3 | 434 | 1 | 417 | 0.0 | 612 |
| MS.gene064623.t1 | MTR_5g089720 | 37.470 | 419 | 210 | 9 | 55 | 434 | 32 | 437 | 4.11e-83 | 262 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064623.t1 | AT5G55530 | 56.881 | 436 | 153 | 9 | 3 | 434 | 1 | 405 | 1.51e-157 | 451 |
| MS.gene064623.t1 | AT5G55530 | 56.881 | 436 | 153 | 9 | 3 | 434 | 1 | 405 | 1.51e-157 | 451 |
| MS.gene064623.t1 | AT5G55530 | 56.881 | 436 | 153 | 9 | 3 | 434 | 1 | 405 | 1.51e-157 | 451 |
| MS.gene064623.t1 | AT1G50570 | 54.156 | 397 | 148 | 10 | 42 | 434 | 22 | 388 | 2.05e-125 | 369 |
| MS.gene064623.t1 | AT1G50570 | 54.156 | 397 | 148 | 10 | 42 | 434 | 22 | 388 | 2.05e-125 | 369 |
| MS.gene064623.t1 | AT5G12300 | 46.154 | 195 | 88 | 5 | 58 | 243 | 21 | 207 | 1.88e-53 | 183 |
| MS.gene064623.t1 | AT5G12300 | 44.872 | 78 | 28 | 2 | 372 | 434 | 297 | 374 | 4.74e-12 | 67.8 |
Find 102 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAAACTTGTTCATGATTT+GGG | 0.195292 | 3.1:-42154333 | None:intergenic |
| CCTGAAACTTGTTCATGATT+TGG | 0.219185 | 3.1:-42154334 | None:intergenic |
| CAATCTTCGTCTCAATGTTT+TGG | 0.227735 | 3.1:+42153697 | MS.gene064623:CDS |
| CTTTCTCTAGTTTACCATTC+TGG | 0.234179 | 3.1:-42153829 | None:intergenic |
| CCAAATCATGAACAAGTTTC+AGG | 0.245310 | 3.1:+42154334 | MS.gene064623:CDS |
| GTCTCTACTAAGACCATTAA+TGG | 0.256641 | 3.1:+42153647 | MS.gene064623:CDS |
| GATCTGTTTCATTCTCCTTC+AGG | 0.261707 | 3.1:+42153872 | MS.gene064623:CDS |
| TTAATGGTTTCAGAATATTT+TGG | 0.269481 | 3.1:+42154073 | MS.gene064623:CDS |
| TGGTCTTCGTTTGCAATCTT+AGG | 0.278614 | 3.1:-42154049 | None:intergenic |
| TGCAAACGAAGACCACTTAA+TGG | 0.284606 | 3.1:+42154057 | MS.gene064623:CDS |
| ATTGACTTCAATGTCCTTAG+AGG | 0.297181 | 3.1:-42153474 | None:intergenic |
| GTTCCTTCCACCTCCATTAA+TGG | 0.307297 | 3.1:-42153660 | None:intergenic |
| TGAGTCATTGGCCAGAGATT+TGG | 0.310125 | 3.1:+42154006 | MS.gene064623:CDS |
| CAATTACTGTTGTATGATCA+TGG | 0.343347 | 3.1:+42153352 | None:intergenic |
| TGCTGAACCATCTGCGGCTC+TGG | 0.358153 | 3.1:-42154463 | None:intergenic |
| CGGTGCTACACCTGATGTTA+TGG | 0.365739 | 3.1:+42153922 | MS.gene064623:CDS |
| TCGTTTGCAATCTTAGGATC+TGG | 0.377435 | 3.1:-42154043 | None:intergenic |
| AAGCAACGGTCCTTCCTCTA+AGG | 0.393297 | 3.1:+42153460 | MS.gene064623:CDS |
| CCAAGCAGTGTGTCAACAAA+TGG | 0.396904 | 3.1:+42154247 | MS.gene064623:CDS |
| GAAAGTGAACCAACTACTTC+AGG | 0.397702 | 3.1:+42154565 | MS.gene064623:CDS |
| CTTGAATTTCCTGAAGTAGT+TGG | 0.407339 | 3.1:-42154574 | None:intergenic |
| CCCTTTAGAACCTCAGTCTT+GGG | 0.408315 | 3.1:+42153398 | MS.gene064623:CDS |
| TTAGTAGAGACACTGTTCTC+TGG | 0.427254 | 3.1:-42153635 | None:intergenic |
| TTCACAGTCACAACAGGCTT+AGG | 0.428362 | 3.1:-42154433 | None:intergenic |
| TCTAAGGACATTGAAGTCAA+TGG | 0.431544 | 3.1:+42153476 | MS.gene064623:CDS |
| GTGAGTTATGGATGCTTAGC+AGG | 0.442760 | 3.1:+42153741 | MS.gene064623:CDS |
| CTCGGAAACATGTGAGTCAT+TGG | 0.443554 | 3.1:+42153994 | MS.gene064623:CDS |
| TTGTTCATGATTTGGGGACT+TGG | 0.443994 | 3.1:-42154326 | None:intergenic |
| CATCTCTCAAATGTGAGTTA+TGG | 0.448295 | 3.1:+42153729 | MS.gene064623:CDS |
| TGTTCTCTGGATTACTTGTC+AGG | 0.449342 | 3.1:-42153622 | None:intergenic |
| CCCAAGACTGAGGTTCTAAA+GGG | 0.451045 | 3.1:-42153398 | None:intergenic |
| CAAGCAGTGTGTCAACAAAT+GGG | 0.452081 | 3.1:+42154248 | MS.gene064623:CDS |
| GCTCGATGTTTATATACATC+AGG | 0.456152 | 3.1:+42153541 | MS.gene064623:CDS |
| GACTCAGTGCTCTGATAGCT+TGG | 0.460570 | 3.1:+42154111 | MS.gene064623:CDS |
| TATCTTGAAGATCAGTTGCT+TGG | 0.461888 | 3.1:+42153773 | MS.gene064623:CDS |
| CTAAGGACATTGAAGTCAAT+GGG | 0.464490 | 3.1:+42153477 | MS.gene064623:CDS |
| ACCCTTTAGAACCTCAGTCT+TGG | 0.466024 | 3.1:+42153397 | MS.gene064623:CDS |
| TCAATATTCACAGTCACAAC+AGG | 0.469854 | 3.1:-42154439 | None:intergenic |
| ACCCAAGACTGAGGTTCTAA+AGG | 0.472225 | 3.1:-42153399 | None:intergenic |
| GGAAGCTGGTGTTCGTCTTG+TGG | 0.480983 | 3.1:+42154162 | MS.gene064623:CDS |
| TGATGCTGAAAATCATAGTT+CGG | 0.482073 | 3.1:+42154141 | MS.gene064623:CDS |
| ATCTGCTATGCCGGGGAAAG+TGG | 0.488327 | 3.1:+42153949 | MS.gene064623:CDS |
| TGTGCAAGTGGAACCTCCTA+AGG | 0.488557 | 3.1:+42154213 | MS.gene064623:CDS |
| TATGGCAATATCTGCTATGC+CGG | 0.490303 | 3.1:+42153940 | MS.gene064623:CDS |
| TAGAACCTCAGTCTTGGGTG+AGG | 0.492450 | 3.1:+42153403 | MS.gene064623:CDS |
| GGCTTAGGGAATAAATCATT+CGG | 0.497719 | 3.1:-42154418 | None:intergenic |
| CTTGGTGGAGACTCAACCTT+AGG | 0.499060 | 3.1:-42154229 | None:intergenic |
| GCAGATATTGCCATAACATC+AGG | 0.499230 | 3.1:-42153932 | None:intergenic |
| ATGGCAATATCTGCTATGCC+GGG | 0.503138 | 3.1:+42153941 | MS.gene064623:CDS |
| TCACAGTCACAACAGGCTTA+GGG | 0.508245 | 3.1:-42154432 | None:intergenic |
| CCATTTGTTGACACACTGCT+TGG | 0.508653 | 3.1:-42154247 | None:intergenic |
| AATATTCTGAAACCATTAAG+TGG | 0.510085 | 3.1:-42154069 | None:intergenic |
| AGAGCCGCAGATGGTTCAGC+AGG | 0.512099 | 3.1:+42154465 | MS.gene064623:CDS |
| GAAAATCATAGTTCGGAAGC+TGG | 0.519872 | 3.1:+42154148 | MS.gene064623:CDS |
| AGCGAAAATGAAGCTTCCTA+TGG | 0.519913 | 3.1:+42154537 | MS.gene064623:CDS |
| GGGTTAGCGTTCTTAGTTTG+CGG | 0.519999 | 3.1:-42154613 | None:intergenic |
| AGGGTGATACAACAGATTGT+GGG | 0.523722 | 3.1:-42153379 | None:intergenic |
| AAGGGTGATACAACAGATTG+TGG | 0.527553 | 3.1:-42153380 | None:intergenic |
| ACTAAGACCATTAATGGAGG+TGG | 0.529485 | 3.1:+42153653 | MS.gene064623:CDS |
| ACATGTGTAGCCACTTTCCC+CGG | 0.538816 | 3.1:-42153959 | None:intergenic |
| GGCTACACATGTCACTCAGC+AGG | 0.540185 | 3.1:+42153970 | MS.gene064623:CDS |
| ATGTTTATATACATCAGGCT+AGG | 0.540326 | 3.1:+42153546 | MS.gene064623:CDS |
| CTCTGCTTCCATAATAGACA+CGG | 0.542849 | 3.1:-42154636 | None:intergenic |
| GGTGGAGACTCAACCTTAGG+AGG | 0.548492 | 3.1:-42154226 | None:intergenic |
| TGAAACTTGTTCATGATTTG+GGG | 0.550211 | 3.1:-42154332 | None:intergenic |
| GGTTCACTTTCAATGTCCAT+AGG | 0.554954 | 3.1:-42154553 | None:intergenic |
| TCTGAGCTTTCATGAGCAGA+AGG | 0.558176 | 3.1:-42154280 | None:intergenic |
| CGAAGATTGTCGTTAAACAC+AGG | 0.561622 | 3.1:-42153683 | None:intergenic |
| TTTGTTGACACACTGCTTGG+TGG | 0.562603 | 3.1:-42154244 | None:intergenic |
| TAGCATAAACATCTTGCTTG+TGG | 0.568663 | 3.1:-42153592 | None:intergenic |
| GAGCACTCCAACGCATTCCT+CGG | 0.573851 | 3.1:-42153522 | None:intergenic |
| ACTTCAATGTCCTTAGAGGA+AGG | 0.576019 | 3.1:-42153470 | None:intergenic |
| TGTAGCACCGGTGTAAGCAA+TGG | 0.580116 | 3.1:-42153909 | None:intergenic |
| CAATTGTCCATTGCTTACAC+CGG | 0.580933 | 3.1:+42153902 | MS.gene064623:CDS |
| TGTTTATATACATCAGGCTA+GGG | 0.582616 | 3.1:+42153547 | MS.gene064623:CDS |
| GGAAGGACCGTTGCTTTGTG+TGG | 0.589066 | 3.1:-42153453 | None:intergenic |
| AGAACCTCAGTCTTGGGTGA+GGG | 0.590332 | 3.1:+42153404 | MS.gene064623:CDS |
| CAGTGGTGAGTCTGTGCAAG+TGG | 0.593745 | 3.1:+42154201 | MS.gene064623:CDS |
| AACTATCATGTCAAATGCCG+AGG | 0.594132 | 3.1:+42153505 | MS.gene064623:CDS |
| ACATGTCACTCAGCAGGACT+CGG | 0.594812 | 3.1:+42153976 | MS.gene064623:CDS |
| TCAAATGCCGAGGAATGCGT+TGG | 0.596916 | 3.1:+42153515 | MS.gene064623:CDS |
| GGACATTGAAGTCAATGGGA+AGG | 0.601234 | 3.1:+42153481 | MS.gene064623:CDS |
| CATAACATCAGGTGTAGCAC+CGG | 0.601546 | 3.1:-42153921 | None:intergenic |
| TCAGAAGTGCTAGTCCAGAA+TGG | 0.601594 | 3.1:+42153815 | MS.gene064623:CDS |
| TCTGCTTCCATAATAGACAC+GGG | 0.601885 | 3.1:-42154635 | None:intergenic |
| GACAATTGAACAAAACCTGA+AGG | 0.605270 | 3.1:-42153887 | None:intergenic |
| TATTGAGCCAGAGCCGCAGA+TGG | 0.613301 | 3.1:+42154456 | MS.gene064623:CDS |
| ATATCCTGCTGAACCATCTG+CGG | 0.615970 | 3.1:-42154469 | None:intergenic |
| ATCATTCGGAACAACACTTG+AGG | 0.622134 | 3.1:-42154404 | None:intergenic |
| TGGACTAGCACTTCTGACAA+TGG | 0.624686 | 3.1:-42153809 | None:intergenic |
| CTGCTTCCATAATAGACACG+GGG | 0.629788 | 3.1:-42154634 | None:intergenic |
| GGGTGATACAACAGATTGTG+GGG | 0.631149 | 3.1:-42153378 | None:intergenic |
| AGACCATTAATGGAGGTGGA+AGG | 0.648853 | 3.1:+42153657 | MS.gene064623:CDS |
| TGGCAATATCTGCTATGCCG+GGG | 0.667680 | 3.1:+42153942 | MS.gene064623:CDS |
| CTCACCCTCACCCAAGACTG+AGG | 0.674424 | 3.1:-42153408 | None:intergenic |
| AAGCAGTGTGTCAACAAATG+GGG | 0.677994 | 3.1:+42154249 | MS.gene064623:CDS |
| GATGTTACCACACAAAGCAA+CGG | 0.679929 | 3.1:+42153446 | MS.gene064623:CDS |
| GAAGATTGTCGTTAAACACA+GGG | 0.680691 | 3.1:-42153682 | None:intergenic |
| TCTACTAAGACCATTAATGG+AGG | 0.690612 | 3.1:+42153650 | MS.gene064623:CDS |
| GAAAGCTTCTCAGCATGCAG+TGG | 0.698296 | 3.1:+42154184 | MS.gene064623:CDS |
| TGAGTTATGGATGCTTAGCA+GGG | 0.699595 | 3.1:+42153742 | MS.gene064623:CDS |
| TGCTTCCATAATAGACACGG+GGG | 0.772529 | 3.1:-42154633 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATGGTTTCAGAATATTT+TGG | + | chr3.1:42154073-42154092 | MS.gene064623:CDS | 20.0% |
| ! | AACCAAAGAAGTAAAAAAAG+TGG | + | chr3.1:42154357-42154376 | MS.gene064623:CDS | 25.0% |
| !!! | AATATTCTGAAACCATTAAG+TGG | - | chr3.1:42154072-42154091 | None:intergenic | 25.0% |
| ATGTTTATATACATCAGGCT+AGG | + | chr3.1:42153546-42153565 | MS.gene064623:CDS | 30.0% | |
| TGATGCTGAAAATCATAGTT+CGG | + | chr3.1:42154141-42154160 | MS.gene064623:CDS | 30.0% | |
| TGTTTATATACATCAGGCTA+GGG | + | chr3.1:42153547-42153566 | MS.gene064623:CDS | 30.0% | |
| ! | CTCAATTTTATCCAAATCTC+TGG | - | chr3.1:42154020-42154039 | None:intergenic | 30.0% |
| ! | CTGAAACTTGTTCATGATTT+GGG | - | chr3.1:42154336-42154355 | None:intergenic | 30.0% |
| ! | TGAAACTTGTTCATGATTTG+GGG | - | chr3.1:42154335-42154354 | None:intergenic | 30.0% |
| !!! | GTCCACTTTTTTTACTTCTT+TGG | - | chr3.1:42154362-42154381 | None:intergenic | 30.0% |
| AAAAAAGTGGACGTCAAAGA+CGG | + | chr3.1:42154370-42154389 | MS.gene064623:CDS | 35.0% | |
| CATCTCTCAAATGTGAGTTA+TGG | + | chr3.1:42153729-42153748 | MS.gene064623:CDS | 35.0% | |
| CCAAATCATGAACAAGTTTC+AGG | + | chr3.1:42154334-42154353 | MS.gene064623:CDS | 35.0% | |
| CTAAGGACATTGAAGTCAAT+GGG | + | chr3.1:42153477-42153496 | MS.gene064623:CDS | 35.0% | |
| CTTGAATTTCCTGAAGTAGT+TGG | - | chr3.1:42154577-42154596 | None:intergenic | 35.0% | |
| GAAGATTGTCGTTAAACACA+GGG | - | chr3.1:42153685-42153704 | None:intergenic | 35.0% | |
| GACAATTGAACAAAACCTGA+AGG | - | chr3.1:42153890-42153909 | None:intergenic | 35.0% | |
| GCTCGATGTTTATATACATC+AGG | + | chr3.1:42153541-42153560 | MS.gene064623:CDS | 35.0% | |
| GGCTTAGGGAATAAATCATT+CGG | - | chr3.1:42154421-42154440 | None:intergenic | 35.0% | |
| GTCTCTACTAAGACCATTAA+TGG | + | chr3.1:42153647-42153666 | MS.gene064623:CDS | 35.0% | |
| TAGCATAAACATCTTGCTTG+TGG | - | chr3.1:42153595-42153614 | None:intergenic | 35.0% | |
| TATCTTGAAGATCAGTTGCT+TGG | + | chr3.1:42153773-42153792 | MS.gene064623:CDS | 35.0% | |
| TCAATATTCACAGTCACAAC+AGG | - | chr3.1:42154442-42154461 | None:intergenic | 35.0% | |
| TCTAAGGACATTGAAGTCAA+TGG | + | chr3.1:42153476-42153495 | MS.gene064623:CDS | 35.0% | |
| TCTACTAAGACCATTAATGG+AGG | + | chr3.1:42153650-42153669 | MS.gene064623:CDS | 35.0% | |
| ! | ATTGACTTCAATGTCCTTAG+AGG | - | chr3.1:42153477-42153496 | None:intergenic | 35.0% |
| ! | CAATCTTCGTCTCAATGTTT+TGG | + | chr3.1:42153697-42153716 | MS.gene064623:CDS | 35.0% |
| ! | CCTGAAACTTGTTCATGATT+TGG | - | chr3.1:42154337-42154356 | None:intergenic | 35.0% |
| ! | CTTTCTCTAGTTTACCATTC+TGG | - | chr3.1:42153832-42153851 | None:intergenic | 35.0% |
| AACTATCATGTCAAATGCCG+AGG | + | chr3.1:42153505-42153524 | MS.gene064623:CDS | 40.0% | |
| AAGCAGTGTGTCAACAAATG+GGG | + | chr3.1:42154249-42154268 | MS.gene064623:CDS | 40.0% | |
| AAGGGTGATACAACAGATTG+TGG | - | chr3.1:42153383-42153402 | None:intergenic | 40.0% | |
| ACTAAGACCATTAATGGAGG+TGG | + | chr3.1:42153653-42153672 | MS.gene064623:CDS | 40.0% | |
| ACTTCAATGTCCTTAGAGGA+AGG | - | chr3.1:42153473-42153492 | None:intergenic | 40.0% | |
| AGCGAAAATGAAGCTTCCTA+TGG | + | chr3.1:42154537-42154556 | MS.gene064623:CDS | 40.0% | |
| AGGGTGATACAACAGATTGT+GGG | - | chr3.1:42153382-42153401 | None:intergenic | 40.0% | |
| ATCATTCGGAACAACACTTG+AGG | - | chr3.1:42154407-42154426 | None:intergenic | 40.0% | |
| CAAGCAGTGTGTCAACAAAT+GGG | + | chr3.1:42154248-42154267 | MS.gene064623:CDS | 40.0% | |
| CAATTGTCCATTGCTTACAC+CGG | + | chr3.1:42153902-42153921 | MS.gene064623:CDS | 40.0% | |
| CGAAGATTGTCGTTAAACAC+AGG | - | chr3.1:42153686-42153705 | None:intergenic | 40.0% | |
| CTCTGCTTCCATAATAGACA+CGG | - | chr3.1:42154639-42154658 | None:intergenic | 40.0% | |
| GAAAATCATAGTTCGGAAGC+TGG | + | chr3.1:42154148-42154167 | MS.gene064623:CDS | 40.0% | |
| GAAAGTGAACCAACTACTTC+AGG | + | chr3.1:42154565-42154584 | MS.gene064623:CDS | 40.0% | |
| GATCTGTTTCATTCTCCTTC+AGG | + | chr3.1:42153872-42153891 | MS.gene064623:CDS | 40.0% | |
| GATGTTACCACACAAAGCAA+CGG | + | chr3.1:42153446-42153465 | MS.gene064623:CDS | 40.0% | |
| GCAGATATTGCCATAACATC+AGG | - | chr3.1:42153935-42153954 | None:intergenic | 40.0% | |
| GGTTCACTTTCAATGTCCAT+AGG | - | chr3.1:42154556-42154575 | None:intergenic | 40.0% | |
| TATGGCAATATCTGCTATGC+CGG | + | chr3.1:42153940-42153959 | MS.gene064623:CDS | 40.0% | |
| TCGTTTGCAATCTTAGGATC+TGG | - | chr3.1:42154046-42154065 | None:intergenic | 40.0% | |
| TCTGCTTCCATAATAGACAC+GGG | - | chr3.1:42154638-42154657 | None:intergenic | 40.0% | |
| TGAGTTATGGATGCTTAGCA+GGG | + | chr3.1:42153742-42153761 | MS.gene064623:CDS | 40.0% | |
| TGCAAACGAAGACCACTTAA+TGG | + | chr3.1:42154057-42154076 | MS.gene064623:CDS | 40.0% | |
| TGGTCTTCGTTTGCAATCTT+AGG | - | chr3.1:42154052-42154071 | None:intergenic | 40.0% | |
| TGTTCTCTGGATTACTTGTC+AGG | - | chr3.1:42153625-42153644 | None:intergenic | 40.0% | |
| TTAGTAGAGACACTGTTCTC+TGG | - | chr3.1:42153638-42153657 | None:intergenic | 40.0% | |
| ! | TTGTTCATGATTTGGGGACT+TGG | - | chr3.1:42154329-42154348 | None:intergenic | 40.0% |
| !!! | ATATTTTGGCATTTCGTGCG+AGG | + | chr3.1:42154087-42154106 | MS.gene064623:CDS | 40.0% |
| !!! | TCAGTTGCTTGGTTTTGCTT+TGG | + | chr3.1:42153784-42153803 | MS.gene064623:CDS | 40.0% |
| AGACCATTAATGGAGGTGGA+AGG | + | chr3.1:42153657-42153676 | MS.gene064623:CDS | 45.0% | |
| ATATCCTGCTGAACCATCTG+CGG | - | chr3.1:42154472-42154491 | None:intergenic | 45.0% | |
| ATGGCAATATCTGCTATGCC+GGG | + | chr3.1:42153941-42153960 | MS.gene064623:CDS | 45.0% | |
| CATAACATCAGGTGTAGCAC+CGG | - | chr3.1:42153924-42153943 | None:intergenic | 45.0% | |
| CCAAGCAGTGTGTCAACAAA+TGG | + | chr3.1:42154247-42154266 | MS.gene064623:CDS | 45.0% | |
| CTCGGAAACATGTGAGTCAT+TGG | + | chr3.1:42153994-42154013 | MS.gene064623:CDS | 45.0% | |
| CTGCTTCCATAATAGACACG+GGG | - | chr3.1:42154637-42154656 | None:intergenic | 45.0% | |
| GGACATTGAAGTCAATGGGA+AGG | + | chr3.1:42153481-42153500 | MS.gene064623:CDS | 45.0% | |
| GGGTGATACAACAGATTGTG+GGG | - | chr3.1:42153381-42153400 | None:intergenic | 45.0% | |
| GTGAGTTATGGATGCTTAGC+AGG | + | chr3.1:42153741-42153760 | MS.gene064623:CDS | 45.0% | |
| GTTCCTTCCACCTCCATTAA+TGG | - | chr3.1:42153663-42153682 | None:intergenic | 45.0% | |
| TCACAGTCACAACAGGCTTA+GGG | - | chr3.1:42154435-42154454 | None:intergenic | 45.0% | |
| TCTGAGCTTTCATGAGCAGA+AGG | - | chr3.1:42154283-42154302 | None:intergenic | 45.0% | |
| TGAGTCATTGGCCAGAGATT+TGG | + | chr3.1:42154006-42154025 | MS.gene064623:CDS | 45.0% | |
| TGCTTCCATAATAGACACGG+GGG | - | chr3.1:42154636-42154655 | None:intergenic | 45.0% | |
| TTCACAGTCACAACAGGCTT+AGG | - | chr3.1:42154436-42154455 | None:intergenic | 45.0% | |
| TTTGTTGACACACTGCTTGG+TGG | - | chr3.1:42154247-42154266 | None:intergenic | 45.0% | |
| ! | ACCCAAGACTGAGGTTCTAA+AGG | - | chr3.1:42153402-42153421 | None:intergenic | 45.0% |
| ! | CCATTTGTTGACACACTGCT+TGG | - | chr3.1:42154250-42154269 | None:intergenic | 45.0% |
| ! | GGGTTAGCGTTCTTAGTTTG+CGG | - | chr3.1:42154616-42154635 | None:intergenic | 45.0% |
| !! | ACCCTTTAGAACCTCAGTCT+TGG | + | chr3.1:42153397-42153416 | MS.gene064623:CDS | 45.0% |
| !! | CCCAAGACTGAGGTTCTAAA+GGG | - | chr3.1:42153401-42153420 | None:intergenic | 45.0% |
| !! | CCCTTTAGAACCTCAGTCTT+GGG | + | chr3.1:42153398-42153417 | MS.gene064623:CDS | 45.0% |
| !! | TCAGAAGTGCTAGTCCAGAA+TGG | + | chr3.1:42153815-42153834 | MS.gene064623:CDS | 45.0% |
| !! | TGGACTAGCACTTCTGACAA+TGG | - | chr3.1:42153812-42153831 | None:intergenic | 45.0% |
| AAGCAACGGTCCTTCCTCTA+AGG | + | chr3.1:42153460-42153479 | MS.gene064623:CDS | 50.0% | |
| ACATGTCACTCAGCAGGACT+CGG | + | chr3.1:42153976-42153995 | MS.gene064623:CDS | 50.0% | |
| AGAACCTCAGTCTTGGGTGA+GGG | + | chr3.1:42153404-42153423 | MS.gene064623:CDS | 50.0% | |
| CTTGGTGGAGACTCAACCTT+AGG | - | chr3.1:42154232-42154251 | None:intergenic | 50.0% | |
| GAAAGCTTCTCAGCATGCAG+TGG | + | chr3.1:42154184-42154203 | MS.gene064623:CDS | 50.0% | |
| GACTCAGTGCTCTGATAGCT+TGG | + | chr3.1:42154111-42154130 | MS.gene064623:CDS | 50.0% | |
| GCTAACCCCCGTGTCTATTA+TGG | + | chr3.1:42154628-42154647 | MS.gene064623:CDS | 50.0% | |
| TAGAACCTCAGTCTTGGGTG+AGG | + | chr3.1:42153403-42153422 | MS.gene064623:CDS | 50.0% | |
| TCAAATGCCGAGGAATGCGT+TGG | + | chr3.1:42153515-42153534 | MS.gene064623:CDS | 50.0% | |
| TGGCAATATCTGCTATGCCG+GGG | + | chr3.1:42153942-42153961 | MS.gene064623:CDS | 50.0% | |
| TGTGCAAGTGGAACCTCCTA+AGG | + | chr3.1:42154213-42154232 | MS.gene064623:CDS | 50.0% | |
| ! | ACATGTGTAGCCACTTTCCC+CGG | - | chr3.1:42153962-42153981 | None:intergenic | 50.0% |
| !! | CGGTGCTACACCTGATGTTA+TGG | + | chr3.1:42153922-42153941 | MS.gene064623:CDS | 50.0% |
| !! | TGTAGCACCGGTGTAAGCAA+TGG | - | chr3.1:42153912-42153931 | None:intergenic | 50.0% |
| ATCTGCTATGCCGGGGAAAG+TGG | + | chr3.1:42153949-42153968 | MS.gene064623:CDS | 55.0% | |
| CAGTGGTGAGTCTGTGCAAG+TGG | + | chr3.1:42154201-42154220 | MS.gene064623:CDS | 55.0% | |
| GAGCACTCCAACGCATTCCT+CGG | - | chr3.1:42153525-42153544 | None:intergenic | 55.0% | |
| GGAAGCTGGTGTTCGTCTTG+TGG | + | chr3.1:42154162-42154181 | MS.gene064623:CDS | 55.0% | |
| GGCTACACATGTCACTCAGC+AGG | + | chr3.1:42153970-42153989 | MS.gene064623:CDS | 55.0% | |
| GGTGGAGACTCAACCTTAGG+AGG | - | chr3.1:42154229-42154248 | None:intergenic | 55.0% | |
| TATTGAGCCAGAGCCGCAGA+TGG | + | chr3.1:42154456-42154475 | MS.gene064623:CDS | 55.0% | |
| ! | GGAAGGACCGTTGCTTTGTG+TGG | - | chr3.1:42153456-42153475 | None:intergenic | 55.0% |
| AGAGCCGCAGATGGTTCAGC+AGG | + | chr3.1:42154465-42154484 | MS.gene064623:CDS | 60.0% | |
| CTCACCCTCACCCAAGACTG+AGG | - | chr3.1:42153411-42153430 | None:intergenic | 60.0% | |
| TGCTGAACCATCTGCGGCTC+TGG | - | chr3.1:42154466-42154485 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 42153365 | 42154669 | 42153365 | ID=MS.gene064623 |
| chr3.1 | mRNA | 42153365 | 42154669 | 42153365 | ID=MS.gene064623.t1;Parent=MS.gene064623 |
| chr3.1 | exon | 42153365 | 42154669 | 42153365 | ID=MS.gene064623.t1.exon1;Parent=MS.gene064623.t1 |
| chr3.1 | CDS | 42153365 | 42154669 | 42153365 | ID=cds.MS.gene064623.t1;Parent=MS.gene064623.t1 |
| Gene Sequence |
| Protein sequence |
