Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065089.t1 | XP_013470231.1 | 96.5 | 601 | 12 | 2 | 1 | 599 | 1 | 594 | 0.00E+00 | 1126.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065089.t1 | F4I9E1 | 24.8 | 544 | 377 | 12 | 26 | 561 | 43 | 562 | 9.2e-30 | 133.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065089.t1 | A0A072VQH4 | 96.5 | 601 | 12 | 2 | 1 | 599 | 1 | 594 | 0.0e+00 | 1126.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049181 | MS.gene065089 | 0.803006 | 4.28E-49 | -1.69E-46 |
| MS.gene051959 | MS.gene065089 | 0.827409 | 1.59E-54 | -1.69E-46 |
| MS.gene051960 | MS.gene065089 | 0.827963 | 1.17E-54 | -1.69E-46 |
| MS.gene053932 | MS.gene065089 | 0.807653 | 4.55E-50 | -1.69E-46 |
| MS.gene055549 | MS.gene065089 | 0.812958 | 3.26E-51 | -1.69E-46 |
| MS.gene055550 | MS.gene065089 | 0.815902 | 7.29E-52 | -1.69E-46 |
| MS.gene057001 | MS.gene065089 | 0.832136 | 1.12E-55 | -1.69E-46 |
| MS.gene057226 | MS.gene065089 | 0.800247 | 1.58E-48 | -1.69E-46 |
| MS.gene058628 | MS.gene065089 | 0.815743 | 7.91E-52 | -1.69E-46 |
| MS.gene058629 | MS.gene065089 | 0.816253 | 6.08E-52 | -1.69E-46 |
| MS.gene058630 | MS.gene065089 | 0.80814 | 3.58E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065089.t1 | MTR_1g111510 | 96.506 | 601 | 12 | 2 | 1 | 599 | 1 | 594 | 0.0 | 1172 |
| MS.gene065089.t1 | MTR_1g111540 | 93.322 | 599 | 35 | 1 | 1 | 599 | 1 | 594 | 0.0 | 1123 |
| MS.gene065089.t1 | MTR_1g111530 | 89.286 | 588 | 58 | 1 | 6 | 593 | 2 | 584 | 0.0 | 1063 |
| MS.gene065089.t1 | MTR_1g111550 | 74.701 | 585 | 140 | 3 | 16 | 598 | 15 | 593 | 0.0 | 888 |
| MS.gene065089.t1 | MTR_7g102880 | 62.689 | 595 | 209 | 5 | 9 | 592 | 12 | 604 | 0.0 | 729 |
| MS.gene065089.t1 | MTR_1g050550 | 59.014 | 588 | 232 | 2 | 10 | 588 | 8 | 595 | 0.0 | 717 |
| MS.gene065089.t1 | MTR_1g059080 | 57.850 | 586 | 231 | 4 | 10 | 591 | 8 | 581 | 0.0 | 693 |
| MS.gene065089.t1 | MTR_2g100400 | 34.151 | 571 | 324 | 5 | 20 | 571 | 1 | 538 | 6.81e-108 | 335 |
| MS.gene065089.t1 | MTR_7g029015 | 35.593 | 590 | 323 | 11 | 15 | 561 | 1 | 576 | 4.44e-106 | 332 |
| MS.gene065089.t1 | MTR_5g090570 | 32.973 | 555 | 331 | 8 | 26 | 571 | 11 | 533 | 7.43e-101 | 317 |
| MS.gene065089.t1 | MTR_3g099150 | 34.446 | 569 | 322 | 11 | 21 | 562 | 10 | 554 | 8.31e-99 | 312 |
| MS.gene065089.t1 | MTR_4g073690 | 34.918 | 547 | 319 | 9 | 26 | 562 | 15 | 534 | 1.89e-92 | 295 |
| MS.gene065089.t1 | MTR_4g116210 | 32.852 | 554 | 348 | 8 | 27 | 562 | 12 | 559 | 1.19e-88 | 286 |
| MS.gene065089.t1 | MTR_2g450710 | 31.115 | 556 | 348 | 7 | 27 | 562 | 13 | 553 | 1.30e-82 | 270 |
| MS.gene065089.t1 | MTR_5g022380 | 32.509 | 566 | 332 | 11 | 21 | 577 | 8 | 532 | 1.49e-81 | 266 |
| MS.gene065089.t1 | MTR_4g073690 | 34.509 | 397 | 232 | 8 | 26 | 412 | 15 | 393 | 3.48e-59 | 203 |
| MS.gene065089.t1 | MTR_5g022380 | 31.533 | 463 | 267 | 11 | 124 | 577 | 1 | 422 | 6.75e-59 | 203 |
| MS.gene065089.t1 | MTR_7g083660 | 26.307 | 574 | 381 | 16 | 26 | 575 | 7 | 562 | 3.29e-33 | 134 |
| MS.gene065089.t1 | MTR_2g104250 | 31.441 | 229 | 114 | 5 | 334 | 562 | 104 | 289 | 3.22e-30 | 121 |
| MS.gene065089.t1 | MTR_5g026350 | 24.826 | 576 | 393 | 14 | 26 | 574 | 7 | 569 | 6.45e-28 | 118 |
| MS.gene065089.t1 | MTR_5g095240 | 67.606 | 71 | 23 | 0 | 498 | 568 | 2 | 72 | 9.95e-27 | 103 |
| MS.gene065089.t1 | MTR_3g466040 | 24.417 | 557 | 368 | 12 | 15 | 562 | 1 | 513 | 7.89e-25 | 108 |
| MS.gene065089.t1 | MTR_3g466110 | 23.346 | 514 | 351 | 10 | 24 | 531 | 5 | 481 | 1.43e-22 | 102 |
| MS.gene065089.t1 | MTR_8g071920 | 24.871 | 583 | 388 | 16 | 26 | 576 | 48 | 612 | 3.05e-21 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065089.t1 | AT2G39210 | 72.906 | 561 | 149 | 2 | 13 | 572 | 8 | 566 | 0.0 | 848 |
| MS.gene065089.t1 | AT2G28120 | 62.566 | 569 | 205 | 2 | 20 | 586 | 11 | 573 | 0.0 | 720 |
| MS.gene065089.t1 | AT1G74780 | 35.677 | 569 | 314 | 5 | 20 | 572 | 1 | 533 | 8.85e-111 | 342 |
| MS.gene065089.t1 | AT1G18940 | 36.607 | 560 | 296 | 9 | 18 | 562 | 1 | 516 | 1.92e-108 | 336 |
| MS.gene065089.t1 | AT5G50520 | 35.401 | 548 | 317 | 7 | 22 | 561 | 12 | 530 | 8.23e-101 | 317 |
| MS.gene065089.t1 | AT5G50630 | 35.401 | 548 | 317 | 7 | 22 | 561 | 12 | 530 | 8.23e-101 | 317 |
| MS.gene065089.t1 | AT5G14120 | 34.375 | 576 | 346 | 10 | 20 | 570 | 10 | 578 | 1.62e-99 | 314 |
| MS.gene065089.t1 | AT2G34355 | 32.920 | 565 | 312 | 7 | 23 | 568 | 4 | 520 | 8.93e-97 | 305 |
| MS.gene065089.t1 | AT2G34350 | 32.862 | 566 | 319 | 8 | 20 | 568 | 1 | 522 | 1.52e-96 | 305 |
| MS.gene065089.t1 | AT2G34350 | 32.862 | 566 | 319 | 8 | 20 | 568 | 1 | 522 | 1.52e-96 | 305 |
| MS.gene065089.t1 | AT3G01930 | 32.653 | 588 | 343 | 9 | 22 | 571 | 12 | 584 | 4.45e-96 | 306 |
| MS.gene065089.t1 | AT4G34950 | 32.727 | 550 | 341 | 7 | 26 | 561 | 16 | 550 | 8.85e-92 | 294 |
| MS.gene065089.t1 | AT2G16660 | 34.254 | 543 | 323 | 8 | 26 | 561 | 14 | 529 | 9.55e-89 | 285 |
| MS.gene065089.t1 | AT1G80530 | 30.866 | 554 | 342 | 11 | 27 | 562 | 14 | 544 | 4.02e-74 | 247 |
| MS.gene065089.t1 | AT3G01930 | 31.315 | 479 | 290 | 9 | 124 | 571 | 1 | 471 | 9.21e-67 | 225 |
| MS.gene065089.t1 | AT2G34355 | 32.683 | 410 | 231 | 9 | 163 | 568 | 2 | 370 | 1.85e-60 | 206 |
| MS.gene065089.t1 | AT3G01930 | 31.690 | 426 | 241 | 7 | 22 | 409 | 12 | 425 | 1.02e-58 | 203 |
| MS.gene065089.t1 | AT2G16660 | 33.503 | 394 | 237 | 7 | 26 | 412 | 14 | 389 | 1.11e-54 | 191 |
| MS.gene065089.t1 | AT3G01630 | 25.673 | 557 | 359 | 15 | 26 | 562 | 41 | 562 | 3.29e-32 | 131 |
| MS.gene065089.t1 | AT3G01630 | 25.673 | 557 | 359 | 15 | 26 | 562 | 23 | 544 | 3.63e-32 | 131 |
| MS.gene065089.t1 | AT4G19450 | 25.088 | 570 | 376 | 14 | 26 | 562 | 7 | 558 | 2.03e-31 | 129 |
| MS.gene065089.t1 | AT5G45275 | 26.042 | 576 | 376 | 14 | 26 | 572 | 7 | 561 | 9.45e-31 | 127 |
| MS.gene065089.t1 | AT1G31470 | 23.818 | 571 | 386 | 12 | 26 | 583 | 43 | 577 | 1.04e-29 | 124 |
| MS.gene065089.t1 | AT4G19450 | 25.485 | 412 | 264 | 10 | 26 | 405 | 7 | 407 | 1.05e-23 | 104 |
Find 103 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGCAACTTTGTATAATTT+TGG | 0.150653 | 1.2:+82558733 | MS.gene065089:CDS |
| AACACATCTTCCCACCATTT+TGG | 0.178261 | 1.2:-82558277 | None:intergenic |
| AGCTGTTGTTTCACTTATTT+TGG | 0.189280 | 1.2:+82558945 | MS.gene065089:CDS |
| TGAATCTCGTGGCGCGGTTT+TGG | 0.190727 | 1.2:+82557760 | MS.gene065089:CDS |
| TATATTTCACTTGGTCTTGC+TGG | 0.241800 | 1.2:+82557983 | MS.gene065089:CDS |
| TACGTAGCTTCAGTAATAAT+TGG | 0.273011 | 1.2:+82558643 | MS.gene065089:CDS |
| GGTGCTATTCTCAATTTCTT+TGG | 0.281836 | 1.2:+82557596 | MS.gene065089:CDS |
| AGCAACGTTGGTGTCCTTTC+AGG | 0.296123 | 1.2:+82557530 | MS.gene065089:CDS |
| TCTTTGGTTACTTCATGATT+TGG | 0.300114 | 1.2:+82557612 | MS.gene065089:CDS |
| AAAACCGCGCCACGAGATTC+AGG | 0.310919 | 1.2:-82557758 | None:intergenic |
| GTGACATATACAAGAGATAT+AGG | 0.328395 | 1.2:+82558995 | MS.gene065089:CDS |
| AAAGGCTATGTTGGTCTTAG+TGG | 0.334364 | 1.2:+82557791 | MS.gene065089:CDS |
| TTCCATTGGTGTTCATGGTT+GGG | 0.335726 | 1.2:+82557322 | MS.gene065089:CDS |
| ATGTGTCTTTACATTTGTAT+AGG | 0.337463 | 1.2:+82557677 | MS.gene065089:CDS |
| GTAAGCATTTGGAATTATCT+AGG | 0.357538 | 1.2:+82558484 | MS.gene065089:CDS |
| GGAAATTCCATTGGTGTTCA+TGG | 0.360435 | 1.2:+82557317 | MS.gene065089:CDS |
| TCGACAAGTTAATGAACTTA+AGG | 0.361561 | 1.2:+82557943 | MS.gene065089:CDS |
| ACCACCGTCCGGTGATGAAT+TGG | 0.362421 | 1.2:-82557367 | None:intergenic |
| TTGACAGCAATTGATAATCT+TGG | 0.365572 | 1.2:+82558403 | MS.gene065089:CDS |
| CTTGGAAAGCAAAGAATAGA+AGG | 0.371411 | 1.2:+82558847 | MS.gene065089:CDS |
| AAATATCAAGACCACAAGTT+TGG | 0.381904 | 1.2:+82557651 | MS.gene065089:CDS |
| CTATTTGTGGCATGTATTTG+TGG | 0.387438 | 1.2:+82558367 | MS.gene065089:CDS |
| TGGTCTTGCTGGATTCTTGT+TGG | 0.395905 | 1.2:+82557994 | MS.gene065089:CDS |
| TTGTGTCTTTAGTAAGCATT+TGG | 0.401481 | 1.2:+82558473 | MS.gene065089:CDS |
| TAAGGAGGTTTAGTGTGCTT+TGG | 0.411770 | 1.2:-82557487 | None:intergenic |
| GTGGCATGTATTTGTGGTGT+TGG | 0.412454 | 1.2:+82558373 | MS.gene065089:CDS |
| TCCATTGGTGTTCATGGTTG+GGG | 0.418602 | 1.2:+82557323 | MS.gene065089:CDS |
| AGTTCATTAACTTGTCGAAC+AGG | 0.419859 | 1.2:-82557938 | None:intergenic |
| ATATAGGGAAGAAGCTGAAA+TGG | 0.422458 | 1.2:+82559011 | MS.gene065089:CDS |
| AGAGTTAAAGTAAGCATAAG+AGG | 0.426460 | 1.2:-82558565 | None:intergenic |
| ATTGATAATCTTGGTCAGAT+AGG | 0.426987 | 1.2:+82558412 | MS.gene065089:CDS |
| CTCCGGCAGCTGCCATGATT+AGG | 0.431429 | 1.2:-82557409 | None:intergenic |
| AGACATGTTGATACTATTTG+TGG | 0.431839 | 1.2:+82558354 | MS.gene065089:CDS |
| TCATTGAAGAGAACAAGATT+TGG | 0.435135 | 1.2:+82558119 | MS.gene065089:CDS |
| CAAAGAAGCAAAGAAGCAAT+TGG | 0.437960 | 1.2:+82558819 | MS.gene065089:CDS |
| GCCGGAGCCACCTACATGTT+CGG | 0.441437 | 1.2:+82557425 | MS.gene065089:CDS |
| AACTCTCTTTGTCTCATGTG+TGG | 0.452502 | 1.2:+82558582 | MS.gene065089:CDS |
| TATGATCATAATTCAGAAGA+AGG | 0.453739 | 1.2:+82558018 | MS.gene065089:CDS |
| TGTTGAACTGAGGTTGTTGT+TGG | 0.458257 | 1.2:-82558218 | None:intergenic |
| ACTCTCTTTGTCTCATGTGT+GGG | 0.462025 | 1.2:+82558583 | MS.gene065089:CDS |
| GGAATTCTTAAAGGCTATGT+TGG | 0.464341 | 1.2:+82557782 | MS.gene065089:CDS |
| TGACATATACAAGAGATATA+GGG | 0.477639 | 1.2:+82558996 | MS.gene065089:CDS |
| ACCGAACATGTAGGTGGCTC+CGG | 0.477927 | 1.2:-82557426 | None:intergenic |
| ATTCCATTGGTGTTCATGGT+TGG | 0.479502 | 1.2:+82557321 | MS.gene065089:CDS |
| CAACGAACTTTATCCACCTT+GGG | 0.485090 | 1.2:+82557559 | MS.gene065089:CDS |
| GGAAGTGTAGCAAGTCCACT+TGG | 0.498928 | 1.2:+82558754 | MS.gene065089:CDS |
| CCATCTGTTACTATTTGCAC+TGG | 0.499203 | 1.2:-82558175 | None:intergenic |
| TCAACGAACTTTATCCACCT+TGG | 0.500852 | 1.2:+82557558 | MS.gene065089:CDS |
| GCATGTATTTGTGGTGTTGG+TGG | 0.506795 | 1.2:+82558376 | MS.gene065089:CDS |
| TTCCTAATCATGGCAGCTGC+CGG | 0.507434 | 1.2:+82557407 | MS.gene065089:CDS |
| AAAGCAAAGGAAATAGCAGC+AGG | 0.514488 | 1.2:-82557890 | None:intergenic |
| TTCTTTGTCGTACAAATGAC+CGG | 0.515660 | 1.2:-82558803 | None:intergenic |
| TATTGTATAATCATCACCTC+TGG | 0.521894 | 1.2:-82558311 | None:intergenic |
| GGTAAAGAACGCGGAAAAGA+CGG | 0.529550 | 1.2:+82559038 | MS.gene065089:CDS |
| AAACCGCGCCACGAGATTCA+GGG | 0.536970 | 1.2:-82557757 | None:intergenic |
| AAGAAGCAATTGGAAGCACT+TGG | 0.537705 | 1.2:+82558829 | MS.gene065089:CDS |
| AACAGGTTTCATATATCGAA+TGG | 0.538846 | 1.2:-82557921 | None:intergenic |
| TAGGGAAGAAGCTGAAATGG+TGG | 0.542633 | 1.2:+82559014 | MS.gene065089:CDS |
| GTTCGTTGATTAATCCTGAA+AGG | 0.550279 | 1.2:-82557544 | None:intergenic |
| GTATAATCATCACCTCTGGC+TGG | 0.551037 | 1.2:-82558307 | None:intergenic |
| GTTACTATTTGCACTGGTGA+AGG | 0.553013 | 1.2:-82558169 | None:intergenic |
| GAAGCTACGTAGAGACCCTC+TGG | 0.564193 | 1.2:-82558631 | None:intergenic |
| ACGGAAGAAGATGACAAAGT+TGG | 0.565869 | 1.2:+82559057 | MS.gene065089:CDS |
| TAATCATCACCTCTGGCTGG+TGG | 0.569807 | 1.2:-82558304 | None:intergenic |
| AAAGCAAAGAATAGAAGGGC+AGG | 0.570654 | 1.2:+82558852 | MS.gene065089:CDS |
| GTGCTTAATGTGAAGATCGC+CGG | 0.571424 | 1.2:+82558784 | MS.gene065089:CDS |
| CCGGACATAAAAGCAACACT+TGG | 0.577829 | 1.2:+82557458 | MS.gene065089:CDS |
| GGGCAGGAATTGAATTGTGT+TGG | 0.581328 | 1.2:+82558868 | MS.gene065089:CDS |
| TCAATGAAAACAACGGCAAG+TGG | 0.581784 | 1.2:-82558103 | None:intergenic |
| GGCAGCTGCCATGATTAGGA+AGG | 0.584139 | 1.2:-82557405 | None:intergenic |
| AGACACATTTGCCAAACTTG+TGG | 0.585563 | 1.2:-82557662 | None:intergenic |
| AAAGACTTTGGTAGCAACGT+TGG | 0.591191 | 1.2:+82557518 | MS.gene065089:CDS |
| AAAGTAAGCATAAGAGGACG+AGG | 0.591288 | 1.2:-82558559 | None:intergenic |
| TCCCCAACCATGAACACCAA+TGG | 0.591569 | 1.2:-82557324 | None:intergenic |
| GTATGGTTTAAGTGCTGCTG+TGG | 0.591609 | 1.2:+82558060 | MS.gene065089:CDS |
| GGAAGAAGCTGAAATGGTGG+AGG | 0.594474 | 1.2:+82559017 | MS.gene065089:CDS |
| AAGAATTTCCCTGAATCTCG+TGG | 0.601228 | 1.2:+82557749 | MS.gene065089:CDS |
| AGCTGCCATGATTAGGAAGG+AGG | 0.612953 | 1.2:-82557402 | None:intergenic |
| GTTCTCTTCAATGAAAACAA+CGG | 0.618801 | 1.2:-82558110 | None:intergenic |
| GCACATCAAATGCTATCAGA+AGG | 0.619230 | 1.2:-82558609 | None:intergenic |
| AATGGTTCGAAGAAAAGCAA+AGG | 0.619783 | 1.2:-82557903 | None:intergenic |
| CATGTTCGGTCTATACTCCC+CGG | 0.621456 | 1.2:+82557439 | MS.gene065089:CDS |
| GGAGTATAGACCGAACATGT+AGG | 0.629042 | 1.2:-82557435 | None:intergenic |
| GAAGTGTAGCAAGTCCACTT+GGG | 0.630096 | 1.2:+82558755 | MS.gene065089:CDS |
| GATAGCATTTGATGTGCCAG+AGG | 0.635342 | 1.2:+82558615 | MS.gene065089:CDS |
| ATGGCAGTAGGAAATTCCAT+TGG | 0.637966 | 1.2:+82557308 | MS.gene065089:CDS |
| CCAGTGCAAATAGTAACAGA+TGG | 0.639380 | 1.2:+82558175 | MS.gene065089:CDS |
| CAGCAGAGGTTGTTGAACTG+AGG | 0.642991 | 1.2:-82558228 | None:intergenic |
| TTTCCCTGAATCTCGTGGCG+CGG | 0.644011 | 1.2:+82557754 | MS.gene065089:CDS |
| CCTATTGTCAAAACTACCCA+AGG | 0.644366 | 1.2:-82557575 | None:intergenic |
| ATAGCATTTGATGTGCCAGA+GGG | 0.644810 | 1.2:+82558616 | MS.gene065089:CDS |
| TTGGAAAGCAAAGAATAGAA+GGG | 0.645826 | 1.2:+82558848 | MS.gene065089:CDS |
| CTCACCGTCCAATTCATCAC+CGG | 0.647057 | 1.2:+82557359 | MS.gene065089:CDS |
| TTAAGCACATATAACCCAAG+TGG | 0.655955 | 1.2:-82558769 | None:intergenic |
| TATTTACTATGATGACACAA+AGG | 0.659190 | 1.2:+82557841 | MS.gene065089:CDS |
| ATTGTCAAAACTACCCAAGG+TGG | 0.665582 | 1.2:-82557572 | None:intergenic |
| GTGTTCAATCCACCAGCCAG+AGG | 0.678931 | 1.2:+82558295 | MS.gene065089:CDS |
| GACTGAAACTGAAACAGCAG+AGG | 0.678973 | 1.2:-82558242 | None:intergenic |
| CCGTCCGGTGATGAATTGGA+CGG | 0.681338 | 1.2:-82557363 | None:intergenic |
| CCGTCCAATTCATCACCGGA+CGG | 0.687213 | 1.2:+82557363 | MS.gene065089:CDS |
| GTATAGACCGAACATGTAGG+TGG | 0.689369 | 1.2:-82557432 | None:intergenic |
| TCCAATTCATCACCGGACGG+TGG | 0.690622 | 1.2:+82557366 | MS.gene065089:CDS |
| AATGGTGGAGGTAAAGAACG+CGG | 0.756489 | 1.2:+82559029 | MS.gene065089:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTGTATATTTCACT+TGG | + | chr1.2:82557974-82557993 | MS.gene065089:CDS | 15.0% |
| !!! | GTAATAATTGGATTTTGTTT+TGG | + | chr1.2:82558655-82558674 | MS.gene065089:CDS | 20.0% |
| !!! | TATGCAACTTTGTATAATTT+TGG | + | chr1.2:82558733-82558752 | MS.gene065089:CDS | 20.0% |
| ! | AAAAAAAGATCCAAAATGGT+GGG | + | chr1.2:82558267-82558286 | MS.gene065089:CDS | 25.0% |
| ! | ATGTGTCTTTACATTTGTAT+AGG | + | chr1.2:82557677-82557696 | MS.gene065089:CDS | 25.0% |
| ! | GATATAATGGCAAAAAGTAA+TGG | - | chr1.2:82558691-82558710 | None:intergenic | 25.0% |
| ! | TATGATCATAATTCAGAAGA+AGG | + | chr1.2:82558018-82558037 | MS.gene065089:CDS | 25.0% |
| ! | TATTTACTATGATGACACAA+AGG | + | chr1.2:82557841-82557860 | MS.gene065089:CDS | 25.0% |
| ! | TGACATATACAAGAGATATA+GGG | + | chr1.2:82558996-82559015 | MS.gene065089:CDS | 25.0% |
| !! | ACCATTTTGGATCTTTTTTT+GGG | - | chr1.2:82558267-82558286 | None:intergenic | 25.0% |
| !! | CAAAGTCTTTGAAAAAACTA+AGG | - | chr1.2:82557508-82557527 | None:intergenic | 25.0% |
| !! | CCATTATATCAGAACTTTTT+GGG | + | chr1.2:82558701-82558720 | MS.gene065089:CDS | 25.0% |
| !!! | AAGGCTTTGATTTTGTTTAT+AGG | + | chr1.2:82557860-82557879 | MS.gene065089:CDS | 25.0% |
| !!! | CTTAGTTTTTTCAAAGACTT+TGG | + | chr1.2:82557506-82557525 | MS.gene065089:CDS | 25.0% |
| !!! | CTTTGATTTTGTTTATAGGT+TGG | + | chr1.2:82557864-82557883 | MS.gene065089:CDS | 25.0% |
| !!! | TTGTGGTCTTGATATTTTTT+TGG | - | chr1.2:82557648-82557667 | None:intergenic | 25.0% |
| AAATATCAAGACCACAAGTT+TGG | + | chr1.2:82557651-82557670 | MS.gene065089:CDS | 30.0% | |
| AACAGGTTTCATATATCGAA+TGG | - | chr1.2:82557924-82557943 | None:intergenic | 30.0% | |
| AGACATGTTGATACTATTTG+TGG | + | chr1.2:82558354-82558373 | MS.gene065089:CDS | 30.0% | |
| AGAGTTAAAGTAAGCATAAG+AGG | - | chr1.2:82558568-82558587 | None:intergenic | 30.0% | |
| CAAAAAAAGATCCAAAATGG+TGG | + | chr1.2:82558266-82558285 | MS.gene065089:CDS | 30.0% | |
| GTGACATATACAAGAGATAT+AGG | + | chr1.2:82558995-82559014 | MS.gene065089:CDS | 30.0% | |
| GTTCTCTTCAATGAAAACAA+CGG | - | chr1.2:82558113-82558132 | None:intergenic | 30.0% | |
| TACGTAGCTTCAGTAATAAT+TGG | + | chr1.2:82558643-82558662 | MS.gene065089:CDS | 30.0% | |
| TATTGTATAATCATCACCTC+TGG | - | chr1.2:82558314-82558333 | None:intergenic | 30.0% | |
| TCATTGAAGAGAACAAGATT+TGG | + | chr1.2:82558119-82558138 | MS.gene065089:CDS | 30.0% | |
| TCCCAAAAAAAGATCCAAAA+TGG | + | chr1.2:82558263-82558282 | MS.gene065089:CDS | 30.0% | |
| TCGACAAGTTAATGAACTTA+AGG | + | chr1.2:82557943-82557962 | MS.gene065089:CDS | 30.0% | |
| TCTTTGGTTACTTCATGATT+TGG | + | chr1.2:82557612-82557631 | MS.gene065089:CDS | 30.0% | |
| TTGGAAAGCAAAGAATAGAA+GGG | + | chr1.2:82558848-82558867 | MS.gene065089:CDS | 30.0% | |
| TTGTGTCTTTAGTAAGCATT+TGG | + | chr1.2:82558473-82558492 | MS.gene065089:CDS | 30.0% | |
| ! | AGGACAAGAAAGTTTTACAA+AGG | + | chr1.2:82558973-82558992 | MS.gene065089:CDS | 30.0% |
| ! | AGTCTTTGAAAAAACTAAGG+AGG | - | chr1.2:82557505-82557524 | None:intergenic | 30.0% |
| ! | ATTGATAATCTTGGTCAGAT+AGG | + | chr1.2:82558412-82558431 | MS.gene065089:CDS | 30.0% |
| ! | CACCATTTTGGATCTTTTTT+TGG | - | chr1.2:82558268-82558287 | None:intergenic | 30.0% |
| ! | CCCAAAAAGTTCTGATATAA+TGG | - | chr1.2:82558704-82558723 | None:intergenic | 30.0% |
| ! | GCCATTATATCAGAACTTTT+TGG | + | chr1.2:82558700-82558719 | MS.gene065089:CDS | 30.0% |
| ! | GTAAGCATTTGGAATTATCT+AGG | + | chr1.2:82558484-82558503 | MS.gene065089:CDS | 30.0% |
| ! | TTGACAGCAATTGATAATCT+TGG | + | chr1.2:82558403-82558422 | MS.gene065089:CDS | 30.0% |
| !! | AAAGTGCTTATGCTTTTCTT+TGG | - | chr1.2:82558454-82558473 | None:intergenic | 30.0% |
| !!! | AGCTGTTGTTTCACTTATTT+TGG | + | chr1.2:82558945-82558964 | MS.gene065089:CDS | 30.0% |
| !!! | ATTACAGCTGCAACATTTTT+TGG | + | chr1.2:82558922-82558941 | MS.gene065089:CDS | 30.0% |
| !!! | TGTTGTTTCACTTATTTTGG+TGG | + | chr1.2:82558948-82558967 | MS.gene065089:CDS | 30.0% |
| AATGGTTCGAAGAAAAGCAA+AGG | - | chr1.2:82557906-82557925 | None:intergenic | 35.0% | |
| ATATAGGGAAGAAGCTGAAA+TGG | + | chr1.2:82559011-82559030 | MS.gene065089:CDS | 35.0% | |
| CAAAGAAGCAAAGAAGCAAT+TGG | + | chr1.2:82558819-82558838 | MS.gene065089:CDS | 35.0% | |
| CTATTTGTGGCATGTATTTG+TGG | + | chr1.2:82558367-82558386 | MS.gene065089:CDS | 35.0% | |
| CTTGGAAAGCAAAGAATAGA+AGG | + | chr1.2:82558847-82558866 | MS.gene065089:CDS | 35.0% | |
| GGAATTCTTAAAGGCTATGT+TGG | + | chr1.2:82557782-82557801 | MS.gene065089:CDS | 35.0% | |
| TTAAGCACATATAACCCAAG+TGG | - | chr1.2:82558772-82558791 | None:intergenic | 35.0% | |
| TTCTTTGTCGTACAAATGAC+CGG | - | chr1.2:82558806-82558825 | None:intergenic | 35.0% | |
| ! | AGTTTTTCACAGAGTGAGTA+TGG | + | chr1.2:82558043-82558062 | MS.gene065089:CDS | 35.0% |
| ! | GCAGAGTAAAAAACTTGCTT+TGG | + | chr1.2:82558141-82558160 | MS.gene065089:CDS | 35.0% |
| ! | GTTCGTTGATTAATCCTGAA+AGG | - | chr1.2:82557547-82557566 | None:intergenic | 35.0% |
| !! | AGTTCATTAACTTGTCGAAC+AGG | - | chr1.2:82557941-82557960 | None:intergenic | 35.0% |
| !! | GGTGCTATTCTCAATTTCTT+TGG | + | chr1.2:82557596-82557615 | MS.gene065089:CDS | 35.0% |
| !! | TATATTTCACTTGGTCTTGC+TGG | + | chr1.2:82557983-82558002 | MS.gene065089:CDS | 35.0% |
| !!! | GATTTTGTTTTGGTGCTCAA+TGG | + | chr1.2:82558665-82558684 | MS.gene065089:CDS | 35.0% |
| !!! | TTTCACTTATTTTGGTGGCT+AGG | + | chr1.2:82558953-82558972 | MS.gene065089:CDS | 35.0% |
| AAAGCAAAGAATAGAAGGGC+AGG | + | chr1.2:82558852-82558871 | MS.gene065089:CDS | 40.0% | |
| AAAGCAAAGGAAATAGCAGC+AGG | - | chr1.2:82557893-82557912 | None:intergenic | 40.0% | |
| AAAGTAAGCATAAGAGGACG+AGG | - | chr1.2:82558562-82558581 | None:intergenic | 40.0% | |
| AACTCTCTTTGTCTCATGTG+TGG | + | chr1.2:82558582-82558601 | MS.gene065089:CDS | 40.0% | |
| AAGAATTTCCCTGAATCTCG+TGG | + | chr1.2:82557749-82557768 | MS.gene065089:CDS | 40.0% | |
| ACGGAAGAAGATGACAAAGT+TGG | + | chr1.2:82559057-82559076 | MS.gene065089:CDS | 40.0% | |
| ACTCTCTTTGTCTCATGTGT+GGG | + | chr1.2:82558583-82558602 | MS.gene065089:CDS | 40.0% | |
| AGACACATTTGCCAAACTTG+TGG | - | chr1.2:82557665-82557684 | None:intergenic | 40.0% | |
| ATAGCATTTGATGTGCCAGA+GGG | + | chr1.2:82558616-82558635 | MS.gene065089:CDS | 40.0% | |
| ATGGCAGTAGGAAATTCCAT+TGG | + | chr1.2:82557308-82557327 | MS.gene065089:CDS | 40.0% | |
| ATTGTCAAAACTACCCAAGG+TGG | - | chr1.2:82557575-82557594 | None:intergenic | 40.0% | |
| CAACGAACTTTATCCACCTT+GGG | + | chr1.2:82557559-82557578 | MS.gene065089:CDS | 40.0% | |
| CCAGTGCAAATAGTAACAGA+TGG | + | chr1.2:82558175-82558194 | MS.gene065089:CDS | 40.0% | |
| CCATCTGTTACTATTTGCAC+TGG | - | chr1.2:82558178-82558197 | None:intergenic | 40.0% | |
| CCTATTGTCAAAACTACCCA+AGG | - | chr1.2:82557578-82557597 | None:intergenic | 40.0% | |
| GCACATCAAATGCTATCAGA+AGG | - | chr1.2:82558612-82558631 | None:intergenic | 40.0% | |
| TAAGGAGGTTTAGTGTGCTT+TGG | - | chr1.2:82557490-82557509 | None:intergenic | 40.0% | |
| TCAACGAACTTTATCCACCT+TGG | + | chr1.2:82557558-82557577 | MS.gene065089:CDS | 40.0% | |
| TCAATGAAAACAACGGCAAG+TGG | - | chr1.2:82558106-82558125 | None:intergenic | 40.0% | |
| TGTTGAACTGAGGTTGTTGT+TGG | - | chr1.2:82558221-82558240 | None:intergenic | 40.0% | |
| ! | AAAGACTTTGGTAGCAACGT+TGG | + | chr1.2:82557518-82557537 | MS.gene065089:CDS | 40.0% |
| ! | AACACATCTTCCCACCATTT+TGG | - | chr1.2:82558280-82558299 | None:intergenic | 40.0% |
| ! | ATTCCATTGGTGTTCATGGT+TGG | + | chr1.2:82557321-82557340 | MS.gene065089:CDS | 40.0% |
| ! | GGAAATTCCATTGGTGTTCA+TGG | + | chr1.2:82557317-82557336 | MS.gene065089:CDS | 40.0% |
| ! | GTTACTATTTGCACTGGTGA+AGG | - | chr1.2:82558172-82558191 | None:intergenic | 40.0% |
| ! | TCTCAGTCTTTTGCAAACAC+TGG | + | chr1.2:82557707-82557726 | MS.gene065089:CDS | 40.0% |
| ! | TTCCATTGGTGTTCATGGTT+GGG | + | chr1.2:82557322-82557341 | MS.gene065089:CDS | 40.0% |
| ! | TTTTGCCTCCTTCCTAATCA+TGG | + | chr1.2:82557397-82557416 | MS.gene065089:CDS | 40.0% |
| !! | AAAGGCTATGTTGGTCTTAG+TGG | + | chr1.2:82557791-82557810 | MS.gene065089:CDS | 40.0% |
| !! | AAGAAGCAATTGGAAGCACT+TGG | + | chr1.2:82558829-82558848 | MS.gene065089:CDS | 40.0% |
| !! | TATCTAGGACGTGTTTTCTC+AGG | + | chr1.2:82558499-82558518 | MS.gene065089:CDS | 40.0% |
| !!! | AAGTGTTGCTTTTATGTCCG+GGG | - | chr1.2:82557459-82557478 | None:intergenic | 40.0% |
| !!! | CAAGTGTTGCTTTTATGTCC+GGG | - | chr1.2:82557460-82557479 | None:intergenic | 40.0% |
| !!! | CCAAGTGTTGCTTTTATGTC+CGG | - | chr1.2:82557461-82557480 | None:intergenic | 40.0% |
| !!! | CCTTGGGTAGTTTTGACAAT+AGG | + | chr1.2:82557575-82557594 | MS.gene065089:CDS | 40.0% |
| !!! | GCGGTTTTGGGAATTCTTAA+AGG | + | chr1.2:82557773-82557792 | MS.gene065089:CDS | 40.0% |
| AAAAATGACGAACCACCGTC+CGG | - | chr1.2:82557381-82557400 | None:intergenic | 45.0% | |
| CCGGACATAAAAGCAACACT+TGG | + | chr1.2:82557458-82557477 | MS.gene065089:CDS | 45.0% | |
| GAAGTGTAGCAAGTCCACTT+GGG | + | chr1.2:82558755-82558774 | MS.gene065089:CDS | 45.0% | |
| GACTGAAACTGAAACAGCAG+AGG | - | chr1.2:82558245-82558264 | None:intergenic | 45.0% | |
| GATAGCATTTGATGTGCCAG+AGG | + | chr1.2:82558615-82558634 | MS.gene065089:CDS | 45.0% | |
| GGAGTATAGACCGAACATGT+AGG | - | chr1.2:82557438-82557457 | None:intergenic | 45.0% | |
| GGGCAGGAATTGAATTGTGT+TGG | + | chr1.2:82558868-82558887 | MS.gene065089:CDS | 45.0% | |
| GGTAAAGAACGCGGAAAAGA+CGG | + | chr1.2:82559038-82559057 | MS.gene065089:CDS | 45.0% | |
| GTATAATCATCACCTCTGGC+TGG | - | chr1.2:82558310-82558329 | None:intergenic | 45.0% | |
| GTATAGACCGAACATGTAGG+TGG | - | chr1.2:82557435-82557454 | None:intergenic | 45.0% | |
| GTGCTTAATGTGAAGATCGC+CGG | + | chr1.2:82558784-82558803 | MS.gene065089:CDS | 45.0% | |
| GTGGCATGTATTTGTGGTGT+TGG | + | chr1.2:82558373-82558392 | MS.gene065089:CDS | 45.0% | |
| TAGGGAAGAAGCTGAAATGG+TGG | + | chr1.2:82559014-82559033 | MS.gene065089:CDS | 45.0% | |
| ! | AATGGTGGAGGTAAAGAACG+CGG | + | chr1.2:82559029-82559048 | MS.gene065089:CDS | 45.0% |
| ! | GCATGTATTTGTGGTGTTGG+TGG | + | chr1.2:82558376-82558395 | MS.gene065089:CDS | 45.0% |
| ! | GTATGGTTTAAGTGCTGCTG+TGG | + | chr1.2:82558060-82558079 | MS.gene065089:CDS | 45.0% |
| ! | TCCATTGGTGTTCATGGTTG+GGG | + | chr1.2:82557323-82557342 | MS.gene065089:CDS | 45.0% |
| ! | TGGTCTTGCTGGATTCTTGT+TGG | + | chr1.2:82557994-82558013 | MS.gene065089:CDS | 45.0% |
| AGCTGCCATGATTAGGAAGG+AGG | - | chr1.2:82557405-82557424 | None:intergenic | 50.0% | |
| CAGCAGAGGTTGTTGAACTG+AGG | - | chr1.2:82558231-82558250 | None:intergenic | 50.0% | |
| CATGTTCGGTCTATACTCCC+CGG | + | chr1.2:82557439-82557458 | MS.gene065089:CDS | 50.0% | |
| CTCACCGTCCAATTCATCAC+CGG | + | chr1.2:82557359-82557378 | MS.gene065089:CDS | 50.0% | |
| GGAAGAAGCTGAAATGGTGG+AGG | + | chr1.2:82559017-82559036 | MS.gene065089:CDS | 50.0% | |
| TAATCATCACCTCTGGCTGG+TGG | - | chr1.2:82558307-82558326 | None:intergenic | 50.0% | |
| TCCCCAACCATGAACACCAA+TGG | - | chr1.2:82557327-82557346 | None:intergenic | 50.0% | |
| TTCCTAATCATGGCAGCTGC+CGG | + | chr1.2:82557407-82557426 | MS.gene065089:CDS | 50.0% | |
| ! | AGCAACGTTGGTGTCCTTTC+AGG | + | chr1.2:82557530-82557549 | MS.gene065089:CDS | 50.0% |
| ! | GGAAGTGTAGCAAGTCCACT+TGG | + | chr1.2:82558754-82558773 | MS.gene065089:CDS | 50.0% |
| AAAACCGCGCCACGAGATTC+AGG | - | chr1.2:82557761-82557780 | None:intergenic | 55.0% | |
| AAACCGCGCCACGAGATTCA+GGG | - | chr1.2:82557760-82557779 | None:intergenic | 55.0% | |
| ACCACCGTCCGGTGATGAAT+TGG | - | chr1.2:82557370-82557389 | None:intergenic | 55.0% | |
| ACCGAACATGTAGGTGGCTC+CGG | - | chr1.2:82557429-82557448 | None:intergenic | 55.0% | |
| CCGTCCAATTCATCACCGGA+CGG | + | chr1.2:82557363-82557382 | MS.gene065089:CDS | 55.0% | |
| CCGTCCGGTGATGAATTGGA+CGG | - | chr1.2:82557366-82557385 | None:intergenic | 55.0% | |
| GAAGCTACGTAGAGACCCTC+TGG | - | chr1.2:82558634-82558653 | None:intergenic | 55.0% | |
| GGCAGCTGCCATGATTAGGA+AGG | - | chr1.2:82557408-82557427 | None:intergenic | 55.0% | |
| GTGTTCAATCCACCAGCCAG+AGG | + | chr1.2:82558295-82558314 | MS.gene065089:CDS | 55.0% | |
| TCCAATTCATCACCGGACGG+TGG | + | chr1.2:82557366-82557385 | MS.gene065089:CDS | 55.0% | |
| TTTCCCTGAATCTCGTGGCG+CGG | + | chr1.2:82557754-82557773 | MS.gene065089:CDS | 55.0% | |
| ! | GAATCTCGTGGCGCGGTTTT+GGG | + | chr1.2:82557761-82557780 | MS.gene065089:CDS | 55.0% |
| ! | TGAATCTCGTGGCGCGGTTT+TGG | + | chr1.2:82557760-82557779 | MS.gene065089:CDS | 55.0% |
| CTCCGGCAGCTGCCATGATT+AGG | - | chr1.2:82557412-82557431 | None:intergenic | 60.0% | |
| GCCGGAGCCACCTACATGTT+CGG | + | chr1.2:82557425-82557444 | MS.gene065089:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 82557308 | 82559107 | 82557308 | ID=MS.gene065089 |
| chr1.2 | mRNA | 82557308 | 82559107 | 82557308 | ID=MS.gene065089.t1;Parent=MS.gene065089 |
| chr1.2 | exon | 82557308 | 82559107 | 82557308 | ID=MS.gene065089.t1.exon1;Parent=MS.gene065089.t1 |
| chr1.2 | CDS | 82557308 | 82559107 | 82557308 | ID=cds.MS.gene065089.t1;Parent=MS.gene065089.t1 |
| Gene Sequence |
| Protein sequence |
